BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2927
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P32234|128UP_DROME GTP-binding protein 128up OS=Drosophila melanogaster GN=128up PE=2
SV=2
Length = 368
Score = 228 bits (582), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 106/118 (89%), Positives = 111/118 (94%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
DQISIEELD+IYKIPHCVP+SAHH WNFDDLLE MWEYL+L RIYTKPKGQLPDY SPVV
Sbjct: 251 DQISIEELDVIYKIPHCVPISAHHHWNFDDLLELMWEYLRLQRIYTKPKGQLPDYNSPVV 310
Query: 66 LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKKV 123
LH +R SIEDFCNKLHR+IAKEFKYALVWGSSVKHQPQKVG EHVLNDEDVVQIVKKV
Sbjct: 311 LHNERTSIEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKVGIEHVLNDEDVVQIVKKV 368
>sp|P43690|DRG1_XENLA Developmentally-regulated GTP-binding protein 1 OS=Xenopus laevis
GN=drg1 PE=2 SV=1
Length = 367
Score = 206 bits (524), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 92/117 (78%), Positives = 104/117 (88%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
DQISIEELDIIYK+PHCVP+SAHH+WNFDDLLEK+W+YL+L RIYTKPKGQLPDY SPVV
Sbjct: 251 DQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLQLVRIYTKPKGQLPDYTSPVV 310
Query: 66 LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
L + EDFC K+H+ + KEFKYALVWGSSVKH PQKVGK+HVL DEDV+QIVKK
Sbjct: 311 LPCSHTAAEDFCTKIHKNLIKEFKYALVWGSSVKHNPQKVGKDHVLEDEDVIQIVKK 367
>sp|P32233|DRG1_MOUSE Developmentally-regulated GTP-binding protein 1 OS=Mus musculus
GN=Drg1 PE=1 SV=1
Length = 367
Score = 206 bits (523), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 92/117 (78%), Positives = 104/117 (88%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
DQISIEELDIIYK+PHCVP+SAHH+WNFDDLLEK+W+YLKL RIYTKPKGQLPDY SPVV
Sbjct: 251 DQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVV 310
Query: 66 LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
L R ++EDFC K+H+ + KEFKYALVWG SVKH PQKVGK+H L DEDV+QIVKK
Sbjct: 311 LPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 367
>sp|Q9Y295|DRG1_HUMAN Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens
GN=DRG1 PE=1 SV=1
Length = 367
Score = 206 bits (523), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 92/117 (78%), Positives = 104/117 (88%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
DQISIEELDIIYK+PHCVP+SAHH+WNFDDLLEK+W+YLKL RIYTKPKGQLPDY SPVV
Sbjct: 251 DQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVV 310
Query: 66 LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
L R ++EDFC K+H+ + KEFKYALVWG SVKH PQKVGK+H L DEDV+QIVKK
Sbjct: 311 LPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 367
>sp|Q3MHP5|DRG1_BOVIN Developmentally-regulated GTP-binding protein 1 OS=Bos taurus
GN=DRG1 PE=2 SV=1
Length = 367
Score = 206 bits (523), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 92/117 (78%), Positives = 104/117 (88%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
DQISIEELDIIYK+PHCVP+SAHH+WNFDDLLEK+W+YLKL RIYTKPKGQLPDY SPVV
Sbjct: 251 DQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVV 310
Query: 66 LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
L R ++EDFC K+H+ + KEFKYALVWG SVKH PQKVGK+H L DEDV+QIVKK
Sbjct: 311 LPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 367
>sp|Q54HP3|DRG1_DICDI Developmentally-regulated GTP-binding protein 1 homolog
OS=Dictyostelium discoideum GN=drg1 PE=3 SV=1
Length = 370
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 76/118 (64%), Positives = 95/118 (80%), Gaps = 1/118 (0%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
D ISIEELD++ KIPH VP+S+H +WN D LL+K+WEYLKL R+YTKPKG +PDY PVV
Sbjct: 253 DAISIEELDLLDKIPHYVPISSHLEWNLDALLDKIWEYLKLIRVYTKPKGLIPDYNEPVV 312
Query: 66 LH-TDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
+ + SIE FCN +H +I ++F+YALVWGSS KH PQ+ GK+HVL DED+VQIVKK
Sbjct: 313 IRGGEEASIETFCNHIHNSIIRQFRYALVWGSSAKHNPQRCGKDHVLADEDIVQIVKK 370
>sp|P39729|RBG1_YEAST Ribosome-interacting GTPase 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RBG1 PE=1 SV=1
Length = 369
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 69/117 (58%), Positives = 95/117 (81%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
D +SIEEL+++Y+IP+ VP+S+ WN D+LL+ MW+ L L RIYTKPKGQ+PD+ PVV
Sbjct: 253 DSLSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVV 312
Query: 66 LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
L +DR S++DFCN++H+++ +F+ ALV+GSSVKHQPQ VG H+L DEDVV I+KK
Sbjct: 313 LRSDRCSVKDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTILKK 369
>sp|Q9UT21|YFY7_SCHPO Uncharacterized GTP-binding protein C9.07c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC9.07c PE=2 SV=1
Length = 366
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 83/117 (70%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
D ISIEELD+I +IP+ VP+ + WN D+L E MW+YL L R+YT+P+G PDY PV+
Sbjct: 250 DSISIEELDLIDRIPNAVPICGNRGWNIDELKETMWDYLNLVRVYTRPRGLEPDYSEPVI 309
Query: 66 LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
L T ++EDFCN +H +I +FK+A VWG SV + +VG HVL DEDVV IVKK
Sbjct: 310 LRTGHSTVEDFCNNIHSSIKSQFKHAYVWGKSVPYPGMRVGLSHVLLDEDVVTIVKK 366
>sp|Q9LQK0|DRG1_ARATH Developmentally regulated G-protein 1 OS=Arabidopsis thaliana
GN=DRG1 PE=1 SV=1
Length = 399
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 83/119 (69%), Gaps = 2/119 (1%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
D + I+++D + + P+ + +S + K N D LL +MW+ + L R+Y+KP+GQ PD+ P V
Sbjct: 249 DVVGIDDVDRLSRQPNSIVISCNLKLNLDRLLARMWDEMGLVRVYSKPQGQQPDFDEPFV 308
Query: 66 LHTDRR--SIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
L +DR ++EDFCN +HRT+ K+ KYALVWG+S +H PQ G L DEDVVQIVKK
Sbjct: 309 LSSDRGGCTVEDFCNHVHRTLVKDMKYALVWGTSTRHNPQNCGLSQHLEDEDVVQIVKK 367
>sp|P55039|DRG2_HUMAN Developmentally-regulated GTP-binding protein 2 OS=Homo sapiens
GN=DRG2 PE=1 SV=1
Length = 364
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
DQIS+EE+D + + P+ V +S K N D LLE +WEYL LT IYTK +GQ PD+ ++
Sbjct: 249 DQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYTKKRGQRPDFTDAII 308
Query: 66 LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
L S+E C+++HR++A +FKYALVWG+S K+ PQ+VG H + EDV+QIVKK
Sbjct: 309 LRKGA-SVEHVCHRIHRSLASQFKYALVWGTSTKYSPQRVGLTHTMEHEDVIQIVKK 364
>sp|Q9QXB9|DRG2_MOUSE Developmentally-regulated GTP-binding protein 2 OS=Mus musculus
GN=Drg2 PE=1 SV=1
Length = 364
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
DQIS+EE+D + + P+ V +S K N D LLE +WEYL LT IYTK +GQ PD+ ++
Sbjct: 249 DQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYTKKRGQRPDFTDAII 308
Query: 66 LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
L S+E C+++HR++A +FKYALVWG+S K+ PQ+VG H + EDV+QIVKK
Sbjct: 309 LRKGA-SVEHVCHRIHRSLASQFKYALVWGTSTKYSPQRVGLTHTMEHEDVIQIVKK 364
>sp|Q58D56|DRG2_BOVIN Developmentally-regulated GTP-binding protein 2 OS=Bos taurus
GN=DRG2 PE=2 SV=1
Length = 364
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 82/117 (70%), Gaps = 1/117 (0%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
DQIS+EE+D + + P V +S K N D LLE +WEYL LT IYTK +GQ PD+ ++
Sbjct: 249 DQISMEEVDRLARKPDSVVISCGMKLNLDYLLEMLWEYLALTCIYTKKRGQRPDFTDAII 308
Query: 66 LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
L S+E C+++HR++A +FKYALVWG+S K+ PQ+VG H + EDV+QIVKK
Sbjct: 309 LRKGA-SVEHVCHRIHRSLASQFKYALVWGTSTKYSPQRVGLTHTMEHEDVIQIVKK 364
>sp|Q9CAI1|DRG2_ARATH Developmentally regulated G-protein 2 OS=Arabidopsis thaliana
GN=DRG2 PE=2 SV=1
Length = 399
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 83/119 (69%), Gaps = 2/119 (1%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
D + I+++D + + P+ + +S + K N D LL +MW+ + L R+Y+KP+ Q PD+ P V
Sbjct: 249 DVVGIDDVDRLARQPNSIVISCNLKLNLDRLLARMWDEMGLVRVYSKPQSQQPDFDEPFV 308
Query: 66 LHTDRR--SIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
L DR ++EDFCN++HRT+ K+ KYALVWG+S +H PQ G H L DEDVVQIVKK
Sbjct: 309 LSADRGGCTVEDFCNQVHRTLVKDMKYALVWGTSARHYPQHCGLFHHLEDEDVVQIVKK 367
>sp|P34280|YKK3_CAEEL Uncharacterized GTP-binding protein C02F5.3 OS=Caenorhabditis
elegans GN=C02F5.3 PE=3 SV=2
Length = 366
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 80/119 (67%), Gaps = 3/119 (2%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDY--QSP 63
DQISIEE+D + ++PH V +S N D LLEKMWEYL L R+YTK G PD +
Sbjct: 249 DQISIEEIDRLARMPHHVVISCEMNLNMDYLLEKMWEYLALVRVYTKKPGNAPDLGPEDG 308
Query: 64 VVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
++L +IE C+ LHR+IA + +YA+VWG+S K PQ+VG H L+ EDV+QIVKK
Sbjct: 309 IILRGGA-TIEHCCHALHRSIAAQLRYAIVWGTSTKFSPQRVGLHHKLDHEDVIQIVKK 366
>sp|Q54WT4|DRG2_DICDI Developmentally-regulated GTP-binding protein 2 homolog
OS=Dictyostelium discoideum GN=drg2 PE=3 SV=1
Length = 364
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 79/117 (67%), Gaps = 1/117 (0%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
D +S+E++D + + P+ V +S + N D LL+K+W+YL L R+YTK +G PD+ ++
Sbjct: 249 DHMSMEDVDRLSRQPNSVVISCNMNLNLDFLLDKIWDYLNLVRVYTKLRGASPDFNDAII 308
Query: 66 LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
L + ++ED C LH+ + +FKY +VWG S KH PQ+VG H L DEDV+QIVKK
Sbjct: 309 LR-EGATMEDICRFLHKELVSQFKYGIVWGVSAKHCPQRVGISHALEDEDVIQIVKK 364
>sp|P32235|GTP1_SCHPO GTP-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=gtp1 PE=3 SV=2
Length = 364
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 80/118 (67%), Gaps = 2/118 (1%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
D +S+EE+D + ++P V +S + K N D L E++WE L L RIYTK KG++PD+ ++
Sbjct: 248 DAVSLEEVDRLARLPKSVVISCNMKLNLDFLKERIWEELNLYRIYTKRKGEMPDFSEALI 307
Query: 66 LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQ-KVGKEHVLNDEDVVQIVKK 122
+ +IE CN++HRT+A++ KYALVWG+S KH PQ VG H + + DVV IV K
Sbjct: 308 VRKG-STIEQVCNRIHRTLAEQLKYALVWGTSAKHSPQVVVGLNHRVEEGDVVTIVTK 364
>sp|P53295|RBG2_YEAST Ribosome-interacting GTPase 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RBG2 PE=1 SV=1
Length = 368
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
D +S+EE+D + + P+ V +S D++E++W L L+R+YTK +G P + P+V
Sbjct: 253 DAVSLEEVDKLAREPNTVVMSCEMDLGLQDVVEEIWYQLNLSRVYTKKRGVRPVFDDPLV 312
Query: 66 LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
+ + +I D C+ +HR +FKYALVWGSS KH PQK G H ++DEDVV + K
Sbjct: 313 VRNNS-TIGDLCHGIHRDFKDKFKYALVWGSSAKHSPQKCGLNHRIDDEDVVSLFAK 368
>sp|Q58722|Y1326_METJA Uncharacterized GTP-binding protein MJ1326 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1326 PE=3 SV=1
Length = 391
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 25 LSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTI 84
+S + N D L EK++E L +IY KP+G+ PD+ P+++ +++D C KLH+
Sbjct: 294 VSGNKGINLDLLKEKIYEKLGFIKIYLKPQGKKPDFDEPLIMRRGA-TVKDVCEKLHKDF 352
Query: 85 AKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
+ F+YA VWG S KH Q+VG +H L D D++ IV K
Sbjct: 353 VRNFRYAQVWGKSAKHPGQRVGLDHKLEDGDILTIVIK 390
>sp|P17103|Y1111_HALSA Uncharacterized GTP-binding protein VNG_1111G OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=VNG_1111G PE=3 SV=1
Length = 370
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 25 LSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTI 84
+SA + D L E+MW L L RIY G+ D + P+++ +++D KL T+
Sbjct: 273 ISAAEEKGLDVLKERMWRALGLIRIYMDKPGRGVDREEPLIIRRGE-TVDDAVQKLGGTL 331
Query: 85 AKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
+ F++A V G S +H Q+VG++HVL DEDV+++V +
Sbjct: 332 DERFRFARVTGPSAQHDDQQVGRDHVLEDEDVLRVVAR 369
>sp|P48449|ERG7_HUMAN Lanosterol synthase OS=Homo sapiens GN=LSS PE=1 SV=1
Length = 732
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 14 DIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQ 61
D + I + HH+ F L+K E+L+L+++ P PDYQ
Sbjct: 388 DTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNP----PDYQ 431
>sp|O13899|YF38_SCHPO Uncharacterized CDP-alcohol phosphatidyltransferase class-I family
protein C22A12.08c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC22A12.08c PE=3 SV=1
Length = 570
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 74 EDFC--NKLHRTIAKEFKYALVWG---SSVKHQPQKVGKEHVLNDEDVV 117
+DFC + R +A ++K+ LV G +SV+ +K G + V+N+ DV+
Sbjct: 102 DDFCQSHTPFRALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVI 150
>sp|Q980A5|IF2G_SULSO Translation initiation factor 2 subunit gamma OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=eif2g PE=1 SV=1
Length = 415
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 23 VPLSAHHKWNFDDLLEKMWEYLK 45
+P+SA HK N D L+E + EY+K
Sbjct: 181 IPVSALHKINIDSLIEGIEEYIK 203
>sp|Q5HW09|MIAB_CAMJR (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Campylobacter jejuni (strain RM1221) GN=miaB PE=3
SV=1
Length = 433
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 28 HHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKE 87
H K +F DLLE++ L RI + SP LH D + +E F N + + K
Sbjct: 208 HKKMDFSDLLEELSTIEDLERI---------RFTSPHPLHMDDKFLEVFAN--NPKVCKS 256
Query: 88 FKYALVWGSSVKHQPQKVG--KEHVLN 112
L GSS + K G KE LN
Sbjct: 257 MHMPLQSGSSEILKAMKRGYTKEWYLN 283
>sp|A8FKP3|MIAB_CAMJ8 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Campylobacter jejuni subsp. jejuni serotype O:6
(strain 81116 / NCTC 11828) GN=miaB PE=3 SV=1
Length = 433
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 28 HHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKE 87
H K +F DLLE++ L RI + SP LH D + +E F N + + K
Sbjct: 208 HKKMDFSDLLEELSTIEGLERI---------RFTSPHPLHMDDKFLEVFAN--NPKVCKS 256
Query: 88 FKYALVWGSSVKHQPQKVG--KEHVLN 112
L GSS + K G KE LN
Sbjct: 257 MHMPLQSGSSEILKAMKRGYTKEWYLN 283
>sp|A1VYH4|MIAB_CAMJJ (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Campylobacter jejuni subsp. jejuni serotype O:23/36
(strain 81-176) GN=miaB PE=3 SV=1
Length = 433
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 28 HHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKE 87
H K +F DLLE++ L RI + SP LH D + +E F N + + K
Sbjct: 208 HKKMDFSDLLEELSTIEGLERI---------RFTSPHPLHMDDKFLEVFAN--NPKVCKS 256
Query: 88 FKYALVWGSSVKHQPQKVG--KEHVLN 112
L GSS + K G KE LN
Sbjct: 257 MHMPLQSGSSEILKAMKRGYTKEWYLN 283
>sp|Q0PB55|MIAB_CAMJE (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Campylobacter jejuni subsp. jejuni serotype O:2
(strain NCTC 11168) GN=miaB PE=3 SV=1
Length = 433
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 28 HHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKE 87
H K +F DLLE++ L RI + SP LH D + +E F N + + K
Sbjct: 208 HKKMDFSDLLEELSTIEGLERI---------RFTSPHPLHMDDKFLEVFAN--NPKVCKS 256
Query: 88 FKYALVWGSSVKHQPQKVG--KEHVLN 112
L GSS + K G KE LN
Sbjct: 257 MHMPLQSGSSEILKAMKRGYTKEWYLN 283
>sp|Q17YC7|MIAB_HELAH (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Helicobacter acinonychis (strain Sheeba) GN=miaB PE=3
SV=2
Length = 439
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 26 SAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIA 85
S H K NF DLL+K+ E + RI + SP LH + +E F + +
Sbjct: 204 SEHAKVNFSDLLDKLSEIPGIERIR---------FTSPHPLHMNDEFLERFAK--NPKVC 252
Query: 86 KEFKYALVWGSS--VKHQPQKVGKEHVLN 112
K L GSS +K + KE LN
Sbjct: 253 KSIHMPLQSGSSAVLKMMRRGYNKEWFLN 281
>sp|A7H4S5|MIAB_CAMJD (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Campylobacter jejuni subsp. doylei (strain ATCC
BAA-1458 / RM4099 / 269.97) GN=miaB PE=3 SV=1
Length = 433
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 28 HHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKE 87
H K +F DLLE++ L RI + SP LH D + +E F N + + K
Sbjct: 208 HKKMDFSDLLEELSTIEDLERI---------RFTSPHPLHMDDKFLEVFAN--NPKVCKS 256
Query: 88 FKYALVWGSS 97
L GSS
Sbjct: 257 MHMPLQSGSS 266
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,345,696
Number of Sequences: 539616
Number of extensions: 1962740
Number of successful extensions: 4389
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4355
Number of HSP's gapped (non-prelim): 38
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)