Query psy2927
Match_columns 123
No_of_seqs 215 out of 1104
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 21:09:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1163 DRG Predicted GTPase [ 100.0 4.3E-47 9.2E-52 304.2 13.5 121 1-122 245-365 (365)
2 KOG1486|consensus 100.0 1.6E-42 3.5E-47 271.8 12.5 121 1-122 244-364 (364)
3 KOG1487|consensus 100.0 2.7E-40 5.8E-45 259.9 6.8 122 1-122 237-358 (358)
4 cd01666 TGS_DRG_C TGS_DRG_C: 100.0 5.5E-34 1.2E-38 186.6 9.4 75 46-121 1-75 (75)
5 cd04938 TGS_Obg-like TGS_Obg-l 99.9 6.1E-27 1.3E-31 153.5 7.8 69 46-121 1-76 (76)
6 PRK09602 translation-associate 99.9 4.8E-26 1E-30 187.5 10.7 116 1-122 223-395 (396)
7 PTZ00258 GTP-binding protein; 99.9 2.7E-25 5.9E-30 182.9 8.0 115 1-120 226-385 (390)
8 cd01669 TGS_Ygr210_C TGS_Ygr21 99.8 9.2E-20 2E-24 119.5 7.5 60 53-121 16-76 (76)
9 PRK09601 GTP-binding protein Y 99.8 1.9E-19 4.1E-24 147.2 7.3 85 32-121 266-362 (364)
10 PF02824 TGS: TGS domain; Int 99.6 3.7E-16 8.1E-21 97.9 6.3 60 47-121 1-60 (60)
11 PF06071 YchF-GTPase_C: Protei 99.6 8.1E-17 1.8E-21 107.1 2.4 70 46-120 1-82 (84)
12 cd04867 TGS_YchF_C TGS_YchF_C: 99.6 9.4E-16 2E-20 101.6 1.5 70 46-120 1-82 (83)
13 TIGR00092 GTP-binding protein 99.5 3.2E-15 7E-20 122.5 3.3 85 32-121 270-366 (368)
14 COG0012 Predicted GTPase, prob 99.4 5.5E-14 1.2E-18 115.0 0.8 114 1-119 212-368 (372)
15 KOG1491|consensus 99.2 5.9E-12 1.3E-16 102.5 2.7 85 32-121 293-389 (391)
16 PRK10872 relA (p)ppGpp synthet 99.2 8E-11 1.7E-15 103.8 8.3 63 45-122 404-466 (743)
17 TIGR00691 spoT_relA (p)ppGpp s 99.1 2.6E-10 5.6E-15 100.0 8.3 63 45-122 360-422 (683)
18 cd01896 DRG The developmentall 99.0 2.7E-10 5.9E-15 87.6 5.4 52 1-52 182-233 (233)
19 PRK11092 bifunctional (p)ppGpp 98.7 3.5E-08 7.6E-13 86.9 7.2 52 63-122 397-448 (702)
20 COG0317 SpoT Guanosine polypho 98.6 1.5E-07 3.3E-12 82.7 6.8 76 34-122 374-449 (701)
21 cd01616 TGS The TGS domain, na 98.1 1.2E-05 2.5E-10 47.4 5.8 52 62-121 9-60 (60)
22 COG2262 HflX GTPases [General 97.9 2.3E-05 5.1E-10 65.3 5.8 46 1-46 310-357 (411)
23 TIGR03156 GTP_HflX GTP-binding 97.5 0.00012 2.6E-09 59.8 4.5 44 1-44 307-351 (351)
24 TIGR00436 era GTP-binding prot 97.5 0.0004 8.6E-09 54.2 7.2 45 1-45 113-164 (270)
25 PF08438 MMR_HSR1_C: GTPase of 97.5 3.3E-05 7.1E-10 53.9 0.7 33 1-33 1-37 (109)
26 cd01668 TGS_RelA_SpoT TGS_RelA 97.5 0.00075 1.6E-08 40.5 6.7 51 63-121 10-60 (60)
27 PF00009 GTP_EFTU: Elongation 97.5 0.00022 4.7E-09 52.4 4.7 45 1-45 128-187 (188)
28 cd01859 MJ1464 MJ1464. This f 97.4 0.00016 3.6E-09 51.4 3.3 45 1-45 47-96 (156)
29 COG1159 Era GTPase [General fu 97.4 7.1E-05 1.5E-09 60.2 1.3 46 1-46 120-173 (298)
30 cd01897 NOG NOG1 is a nucleola 97.4 0.00032 6.9E-09 49.5 4.5 44 1-44 119-167 (168)
31 cd01856 YlqF YlqF. Proteins o 97.3 0.00029 6.4E-09 51.2 3.9 46 1-46 52-102 (171)
32 cd01888 eIF2_gamma eIF2-gamma 97.3 0.00035 7.7E-09 52.2 4.4 45 1-45 143-199 (203)
33 cd01855 YqeH YqeH. YqeH is an 97.3 0.00015 3.2E-09 53.4 2.1 45 1-45 67-125 (190)
34 PRK04213 GTP-binding protein; 97.2 0.00044 9.6E-09 50.7 4.2 45 1-46 136-193 (201)
35 cd01849 YlqF_related_GTPase Yl 97.2 0.00045 9.8E-09 49.4 4.1 44 1-44 35-84 (155)
36 COG0481 LepA Membrane GTPase L 97.2 0.00043 9.3E-09 59.4 4.2 45 1-45 134-186 (603)
37 cd01894 EngA1 EngA1 subfamily. 97.2 0.00068 1.5E-08 46.8 4.5 44 1-44 111-157 (157)
38 cd01858 NGP_1 NGP-1. Autoanti 97.2 0.00035 7.5E-09 50.0 3.1 46 1-46 45-96 (157)
39 KOG1489|consensus 97.2 0.00041 8.9E-09 56.8 3.7 43 1-43 318-365 (366)
40 PRK01777 hypothetical protein; 97.2 0.0006 1.3E-08 46.4 3.8 64 44-120 4-74 (95)
41 TIGR00101 ureG urease accessor 97.1 0.00065 1.4E-08 51.2 4.3 46 1-46 143-197 (199)
42 cd04164 trmE TrmE (MnmE, ThdF, 97.1 0.00047 1E-08 47.5 3.0 44 1-44 113-156 (157)
43 TIGR02729 Obg_CgtA Obg family 97.1 0.00086 1.9E-08 54.3 4.9 44 1-44 279-328 (329)
44 cd01890 LepA LepA subfamily. 97.1 0.00085 1.8E-08 47.9 4.3 44 1-44 125-176 (179)
45 cd01878 HflX HflX subfamily. 97.1 0.00085 1.8E-08 49.4 4.5 44 1-44 159-204 (204)
46 PTZ00327 eukaryotic translatio 97.1 0.00079 1.7E-08 57.1 4.6 45 1-45 177-233 (460)
47 PRK15467 ethanolamine utilizat 97.1 0.00093 2E-08 48.1 4.3 46 1-46 97-148 (158)
48 cd01881 Obg_like The Obg-like 97.0 0.00076 1.7E-08 47.6 3.7 44 1-44 126-176 (176)
49 PRK00089 era GTPase Era; Revie 97.0 0.0021 4.5E-08 50.3 6.5 45 1-45 119-171 (292)
50 PF10662 PduV-EutP: Ethanolami 97.0 0.00098 2.1E-08 48.5 4.0 41 1-41 95-142 (143)
51 cd01899 Ygr210 Ygr210 subfamil 97.0 0.002 4.3E-08 52.2 6.2 73 1-87 220-300 (318)
52 cd01898 Obg Obg subfamily. Th 97.0 0.0011 2.4E-08 46.7 4.0 44 1-44 120-170 (170)
53 PRK09866 hypothetical protein; 97.0 0.0009 1.9E-08 59.3 4.1 43 1-43 295-351 (741)
54 PRK12297 obgE GTPase CgtA; Rev 96.9 0.0011 2.3E-08 55.8 4.4 49 1-49 280-331 (424)
55 cd04152 Arl4_Arl7 Arl4/Arl7 su 96.9 0.0014 3.1E-08 47.7 4.6 45 1-45 115-170 (183)
56 KOG0462|consensus 96.9 0.0014 3E-08 57.0 4.9 45 1-45 183-235 (650)
57 KOG1487|consensus 96.9 0.00021 4.6E-09 57.4 -0.1 49 73-121 9-59 (358)
58 PRK15494 era GTPase Era; Provi 96.9 0.0022 4.7E-08 52.1 5.6 45 1-45 166-216 (339)
59 PRK12299 obgE GTPase CgtA; Rev 96.9 0.0015 3.3E-08 53.1 4.5 46 1-46 277-329 (335)
60 PRK10463 hydrogenase nickel in 96.9 0.0013 2.9E-08 52.8 4.1 43 1-43 236-287 (290)
61 cd01889 SelB_euk SelB subfamil 96.9 0.0017 3.7E-08 47.6 4.3 45 1-45 126-186 (192)
62 cd01864 Rab19 Rab19 subfamily. 96.8 0.0018 3.9E-08 45.8 4.2 44 1-44 114-165 (165)
63 COG1160 Predicted GTPases [Gen 96.8 0.0019 4.1E-08 54.6 4.9 45 1-45 118-165 (444)
64 cd04139 RalA_RalB RalA/RalB su 96.8 0.002 4.4E-08 44.8 4.4 45 1-45 111-162 (164)
65 PRK12298 obgE GTPase CgtA; Rev 96.8 0.0017 3.7E-08 53.9 4.4 46 1-46 281-334 (390)
66 PRK12296 obgE GTPase CgtA; Rev 96.8 0.0015 3.2E-08 56.1 4.1 49 1-49 290-344 (500)
67 cd04175 Rap1 Rap1 subgroup. T 96.8 0.0017 3.8E-08 45.7 3.9 45 1-45 112-163 (164)
68 COG5257 GCD11 Translation init 96.8 0.0013 2.8E-08 54.2 3.5 46 1-46 146-203 (415)
69 cd04171 SelB SelB subfamily. 96.8 0.0023 4.9E-08 44.5 4.3 42 1-42 110-163 (164)
70 PRK09435 membrane ATPase/prote 96.8 0.0019 4.2E-08 52.7 4.4 77 1-88 200-292 (332)
71 cd01862 Rab7 Rab7 subfamily. 96.7 0.0027 5.7E-08 44.7 4.4 44 1-44 115-166 (172)
72 cd00881 GTP_translation_factor 96.7 0.0025 5.4E-08 45.3 4.3 25 21-45 163-187 (189)
73 cd01892 Miro2 Miro2 subfamily. 96.7 0.0024 5.2E-08 46.0 4.1 44 1-44 114-165 (169)
74 PRK10512 selenocysteinyl-tRNA- 96.7 0.0012 2.6E-08 57.7 3.0 46 1-46 110-167 (614)
75 cd04138 H_N_K_Ras_like H-Ras/N 96.7 0.0028 6.1E-08 43.9 4.3 44 1-44 112-161 (162)
76 TIGR02528 EutP ethanolamine ut 96.7 0.0025 5.3E-08 44.0 4.0 40 1-40 94-140 (142)
77 PRK11058 GTPase HflX; Provisio 96.7 0.0022 4.8E-08 53.8 4.4 45 1-45 315-362 (426)
78 cd04151 Arl1 Arl1 subfamily. 96.7 0.0018 3.9E-08 45.5 3.4 42 1-42 106-157 (158)
79 COG0536 Obg Predicted GTPase [ 96.7 0.0021 4.5E-08 53.0 4.1 48 1-48 281-336 (369)
80 cd01879 FeoB Ferrous iron tran 96.7 0.0022 4.7E-08 44.5 3.6 44 1-44 107-156 (158)
81 cd04163 Era Era subfamily. Er 96.7 0.0032 6.9E-08 43.2 4.4 44 1-44 117-168 (168)
82 TIGR00750 lao LAO/AO transport 96.7 0.0021 4.6E-08 51.1 3.9 47 1-47 178-240 (300)
83 cd01863 Rab18 Rab18 subfamily. 96.7 0.0034 7.3E-08 43.9 4.5 44 1-44 112-161 (161)
84 cd04157 Arl6 Arl6 subfamily. 96.6 0.0019 4.1E-08 45.1 3.0 42 1-42 110-161 (162)
85 cd04119 RJL RJL (RabJ-Like) su 96.6 0.0036 7.9E-08 43.6 4.4 44 1-44 116-166 (168)
86 PRK05291 trmE tRNA modificatio 96.6 0.0021 4.5E-08 54.1 3.6 45 1-46 327-371 (449)
87 smart00177 ARF ARF-like small 96.6 0.0032 6.9E-08 45.6 4.0 44 1-44 120-173 (175)
88 cd04107 Rab32_Rab38 Rab38/Rab3 96.6 0.004 8.6E-08 46.0 4.5 45 1-45 116-168 (201)
89 PRK12289 GTPase RsgA; Reviewed 96.5 0.002 4.3E-08 52.9 3.0 43 1-43 126-173 (352)
90 cd04165 GTPBP1_like GTPBP1-lik 96.5 0.0033 7.1E-08 48.2 4.0 22 21-42 199-220 (224)
91 cd01860 Rab5_related Rab5-rela 96.5 0.0049 1.1E-07 43.1 4.5 44 1-44 112-162 (163)
92 TIGR03596 GTPase_YlqF ribosome 96.5 0.0024 5.2E-08 50.2 3.1 47 1-47 54-105 (276)
93 smart00173 RAS Ras subfamily o 96.5 0.0043 9.4E-08 43.5 4.2 45 1-45 111-162 (164)
94 cd04136 Rap_like Rap-like subf 96.5 0.0041 8.8E-08 43.4 4.0 44 1-44 112-162 (163)
95 cd01865 Rab3 Rab3 subfamily. 96.5 0.004 8.7E-08 44.1 4.0 44 1-44 112-162 (165)
96 cd04127 Rab27A Rab27a subfamil 96.5 0.0046 1E-07 44.2 4.3 44 1-44 126-176 (180)
97 TIGR03594 GTPase_EngA ribosome 96.5 0.0046 1E-07 50.8 4.8 45 1-45 289-344 (429)
98 PRK00454 engB GTP-binding prot 96.5 0.0058 1.3E-07 44.3 4.8 45 1-45 141-194 (196)
99 PF03658 Ub-RnfH: RnfH family 96.4 0.01 2.2E-07 39.6 5.5 59 49-120 6-71 (84)
100 cd04112 Rab26 Rab26 subfamily. 96.4 0.0054 1.2E-07 44.9 4.6 48 1-48 112-166 (191)
101 PLN00223 ADP-ribosylation fact 96.4 0.0045 9.8E-08 45.3 4.0 44 1-44 124-177 (181)
102 PTZ00099 rab6; Provisional 96.4 0.0064 1.4E-07 44.7 4.8 48 1-48 91-145 (176)
103 cd04160 Arfrp1 Arfrp1 subfamil 96.4 0.0032 6.9E-08 44.3 3.1 42 1-42 113-166 (167)
104 cd04154 Arl2 Arl2 subfamily. 96.4 0.0019 4.2E-08 46.2 2.0 42 1-42 121-172 (173)
105 cd00880 Era_like Era (E. coli 96.4 0.0063 1.4E-07 41.0 4.4 44 1-44 110-163 (163)
106 cd04145 M_R_Ras_like M-Ras/R-R 96.4 0.006 1.3E-07 42.6 4.4 44 1-44 113-163 (164)
107 TIGR00073 hypB hydrogenase acc 96.4 0.0042 9.2E-08 46.5 3.8 43 1-43 154-205 (207)
108 cd04123 Rab21 Rab21 subfamily. 96.4 0.0063 1.4E-07 42.1 4.4 44 1-44 111-161 (162)
109 cd04109 Rab28 Rab28 subfamily. 96.4 0.0048 1E-07 46.2 4.0 46 1-46 115-167 (215)
110 cd04144 Ras2 Ras2 subfamily. 96.4 0.0045 9.7E-08 45.3 3.8 46 1-46 112-164 (190)
111 cd01895 EngA2 EngA2 subfamily. 96.4 0.0063 1.4E-07 42.3 4.4 43 1-43 119-173 (174)
112 COG0486 ThdF Predicted GTPase 96.4 0.0031 6.7E-08 53.5 3.2 47 1-47 330-378 (454)
113 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.4 0.0052 1.1E-07 43.3 3.9 44 1-44 113-163 (166)
114 cd04129 Rho2 Rho2 subfamily. 96.4 0.0042 9.1E-08 45.3 3.5 33 21-55 149-181 (187)
115 PRK04000 translation initiatio 96.4 0.0034 7.4E-08 52.2 3.4 45 1-45 145-201 (411)
116 cd04106 Rab23_lke Rab23-like s 96.3 0.0053 1.1E-07 42.9 3.9 43 1-43 112-161 (162)
117 cd04156 ARLTS1 ARLTS1 subfamil 96.3 0.0028 6.2E-08 44.3 2.5 42 1-42 107-159 (160)
118 cd01861 Rab6 Rab6 subfamily. 96.3 0.0062 1.4E-07 42.4 4.2 44 1-44 111-161 (161)
119 TIGR03680 eif2g_arch translati 96.3 0.0047 1E-07 51.1 4.0 45 1-45 140-196 (406)
120 cd01876 YihA_EngB The YihA (En 96.3 0.0079 1.7E-07 41.4 4.4 44 1-44 116-170 (170)
121 PRK03003 GTP-binding protein D 96.3 0.005 1.1E-07 51.9 4.0 46 1-46 152-200 (472)
122 PRK03003 GTP-binding protein D 96.3 0.0063 1.4E-07 51.3 4.6 45 1-45 328-382 (472)
123 smart00174 RHO Rho (Ras homolo 96.3 0.0065 1.4E-07 43.1 4.0 24 21-44 148-171 (174)
124 cd04158 ARD1 ARD1 subfamily. 96.2 0.0072 1.6E-07 43.2 4.2 45 1-45 106-161 (169)
125 cd04159 Arl10_like Arl10-like 96.2 0.005 1.1E-07 42.1 2.9 42 1-42 107-158 (159)
126 PLN03118 Rab family protein; P 96.2 0.0069 1.5E-07 45.1 3.9 45 1-45 126-177 (211)
127 PRK13768 GTPase; Provisional 96.2 0.0064 1.4E-07 47.4 3.8 25 21-45 223-247 (253)
128 PRK00093 GTP-binding protein D 96.2 0.0086 1.9E-07 49.4 4.8 44 1-44 290-343 (435)
129 cd04149 Arf6 Arf6 subfamily. 96.2 0.007 1.5E-07 43.6 3.8 42 1-42 116-167 (168)
130 PRK09518 bifunctional cytidyla 96.1 0.007 1.5E-07 53.6 4.4 46 1-46 567-622 (712)
131 cd04140 ARHI_like ARHI subfami 96.1 0.0083 1.8E-07 42.5 4.0 43 1-43 114-163 (165)
132 cd04155 Arl3 Arl3 subfamily. 96.1 0.0057 1.2E-07 43.3 3.1 42 1-42 121-172 (173)
133 TIGR00475 selB selenocysteine- 96.1 0.007 1.5E-07 52.6 4.2 47 1-47 109-168 (581)
134 KOG1145|consensus 96.1 0.011 2.4E-07 51.7 5.2 51 1-51 259-322 (683)
135 cd01871 Rac1_like Rac1-like su 96.1 0.007 1.5E-07 43.9 3.6 23 21-43 151-173 (174)
136 cd04176 Rap2 Rap2 subgroup. T 96.1 0.0073 1.6E-07 42.4 3.6 44 1-44 112-162 (163)
137 cd01867 Rab8_Rab10_Rab13_like 96.1 0.011 2.4E-07 42.0 4.5 44 1-44 114-164 (167)
138 cd04124 RabL2 RabL2 subfamily. 96.1 0.01 2.2E-07 42.1 4.3 44 1-44 110-157 (161)
139 cd00879 Sar1 Sar1 subfamily. 96.1 0.0086 1.9E-07 43.3 4.0 23 22-44 168-190 (190)
140 cd04128 Spg1 Spg1p. Spg1p (se 96.1 0.0079 1.7E-07 44.1 3.7 45 1-45 110-166 (182)
141 cd04143 Rhes_like Rhes_like su 96.1 0.0098 2.1E-07 46.2 4.4 45 1-45 119-171 (247)
142 cd04150 Arf1_5_like Arf1-Arf5- 96.1 0.0068 1.5E-07 43.1 3.3 42 1-42 107-158 (159)
143 cd04137 RheB Rheb (Ras Homolog 96.1 0.01 2.2E-07 42.4 4.3 47 1-47 112-165 (180)
144 PRK05433 GTP-binding protein L 96.0 0.0088 1.9E-07 52.2 4.5 45 1-45 132-184 (600)
145 PRK09563 rbgA GTPase YlqF; Rev 96.0 0.0086 1.9E-07 47.4 4.1 46 1-46 57-107 (287)
146 PRK12288 GTPase RsgA; Reviewed 96.0 0.015 3.2E-07 47.7 5.5 43 1-43 156-206 (347)
147 cd01893 Miro1 Miro1 subfamily. 96.0 0.0076 1.6E-07 42.8 3.3 44 1-44 109-163 (166)
148 cd04116 Rab9 Rab9 subfamily. 96.0 0.013 2.9E-07 41.4 4.5 43 1-43 120-169 (170)
149 cd04114 Rab30 Rab30 subfamily. 96.0 0.007 1.5E-07 42.6 3.0 44 1-44 118-168 (169)
150 cd01887 IF2_eIF5B IF2/eIF5B (i 96.0 0.011 2.4E-07 41.3 4.0 24 21-44 142-165 (168)
151 cd01868 Rab11_like Rab11-like. 96.0 0.014 3E-07 41.0 4.4 44 1-44 114-164 (165)
152 TIGR01393 lepA GTP-binding pro 95.9 0.01 2.2E-07 51.8 4.5 45 1-45 128-180 (595)
153 cd04118 Rab24 Rab24 subfamily. 95.9 0.013 2.7E-07 42.6 4.3 44 1-44 111-165 (193)
154 cd04126 Rab20 Rab20 subfamily. 95.9 0.012 2.5E-07 45.1 4.2 25 21-45 166-190 (220)
155 cd04101 RabL4 RabL4 (Rab-like4 95.9 0.016 3.4E-07 40.6 4.5 44 1-44 113-163 (164)
156 cd04141 Rit_Rin_Ric Rit/Rin/Ri 95.9 0.011 2.3E-07 42.7 3.7 44 1-44 113-163 (172)
157 cd04153 Arl5_Arl8 Arl5/Arl8 su 95.9 0.0064 1.4E-07 43.8 2.5 42 1-42 122-173 (174)
158 TIGR00231 small_GTP small GTP- 95.8 0.014 3.1E-07 39.2 4.1 41 1-41 114-160 (161)
159 TIGR03594 GTPase_EngA ribosome 95.8 0.011 2.3E-07 48.6 4.0 46 1-46 113-161 (429)
160 PRK13796 GTPase YqeH; Provisio 95.8 0.011 2.3E-07 48.5 3.9 50 1-50 102-164 (365)
161 cd04122 Rab14 Rab14 subfamily. 95.8 0.017 3.7E-07 40.8 4.5 44 1-44 113-163 (166)
162 smart00178 SAR Sar1p-like memb 95.8 0.016 3.5E-07 42.3 4.4 43 1-43 124-183 (184)
163 cd04148 RGK RGK subfamily. Th 95.8 0.012 2.6E-07 44.6 3.9 52 1-52 112-170 (221)
164 cd00876 Ras Ras family. The R 95.8 0.016 3.4E-07 40.0 4.1 43 1-43 110-159 (160)
165 cd04142 RRP22 RRP22 subfamily. 95.8 0.017 3.7E-07 43.1 4.5 44 1-44 122-173 (198)
166 PRK09518 bifunctional cytidyla 95.8 0.012 2.5E-07 52.2 4.2 46 1-46 389-437 (712)
167 PTZ00133 ADP-ribosylation fact 95.8 0.017 3.6E-07 42.3 4.3 45 1-45 124-178 (182)
168 PRK01889 GTPase RsgA; Reviewed 95.7 0.011 2.3E-07 48.5 3.5 41 1-41 148-193 (356)
169 cd04147 Ras_dva Ras-dva subfam 95.7 0.017 3.7E-07 42.6 4.3 46 1-46 110-164 (198)
170 cd00878 Arf_Arl Arf (ADP-ribos 95.7 0.014 3E-07 40.7 3.7 42 1-42 106-157 (158)
171 cd00877 Ran Ran (Ras-related n 95.7 0.013 2.7E-07 42.0 3.4 44 1-44 110-158 (166)
172 cd04132 Rho4_like Rho4-like su 95.7 0.013 2.8E-07 42.2 3.5 45 1-45 111-167 (187)
173 TIGR03597 GTPase_YqeH ribosome 95.6 0.014 3E-07 47.8 3.8 44 1-44 96-152 (360)
174 cd04110 Rab35 Rab35 subfamily. 95.6 0.019 4.2E-07 42.3 4.3 46 1-46 116-168 (199)
175 cd04135 Tc10 TC10 subfamily. 95.6 0.018 3.8E-07 40.8 3.9 23 21-43 150-172 (174)
176 TIGR00157 ribosome small subun 95.6 0.02 4.4E-07 44.4 4.5 42 1-42 73-120 (245)
177 smart00175 RAB Rab subfamily o 95.6 0.023 4.9E-07 39.5 4.3 44 1-44 111-161 (164)
178 cd04133 Rop_like Rop subfamily 95.6 0.016 3.5E-07 42.6 3.6 44 1-44 111-172 (176)
179 cd04125 RabA_like RabA-like su 95.5 0.029 6.3E-07 40.6 4.7 45 1-45 111-162 (188)
180 cd04108 Rab36_Rab34 Rab34/Rab3 95.5 0.023 5E-07 40.9 4.1 44 1-44 112-164 (170)
181 PRK00093 GTP-binding protein D 95.5 0.022 4.7E-07 47.0 4.4 45 1-45 115-162 (435)
182 cd01866 Rab2 Rab2 subfamily. 95.5 0.029 6.2E-07 39.9 4.5 44 1-44 115-165 (168)
183 cd01854 YjeQ_engC YjeQ/EngC. 95.5 0.02 4.4E-07 45.3 4.1 42 1-42 115-161 (287)
184 PRK00098 GTPase RsgA; Reviewed 95.4 0.022 4.7E-07 45.4 4.2 41 1-41 117-163 (298)
185 COG0378 HypB Ni2+-binding GTPa 95.4 0.016 3.6E-07 44.4 3.1 44 1-44 148-200 (202)
186 cd04120 Rab12 Rab12 subfamily. 95.4 0.026 5.7E-07 42.4 4.2 44 1-44 111-162 (202)
187 COG0532 InfB Translation initi 95.3 0.018 3.8E-07 49.6 3.5 45 1-45 113-170 (509)
188 cd04111 Rab39 Rab39 subfamily. 95.3 0.026 5.6E-07 42.4 4.1 45 1-45 115-166 (211)
189 cd04130 Wrch_1 Wrch-1 subfamil 95.3 0.026 5.6E-07 40.3 3.8 21 21-41 150-170 (173)
190 PLN03110 Rab GTPase; Provision 95.3 0.029 6.2E-07 42.2 4.2 46 1-46 123-175 (216)
191 cd00157 Rho Rho (Ras homology) 95.3 0.015 3.2E-07 40.8 2.5 22 21-42 149-170 (171)
192 cd00154 Rab Rab family. Rab G 95.2 0.03 6.4E-07 38.0 3.9 41 1-41 111-158 (159)
193 cd01870 RhoA_like RhoA-like su 95.2 0.023 5.1E-07 40.2 3.5 23 21-43 151-173 (175)
194 cd01875 RhoG RhoG subfamily. 95.2 0.026 5.6E-07 41.5 3.8 24 21-44 153-176 (191)
195 TIGR00437 feoB ferrous iron tr 95.2 0.015 3.3E-07 50.7 2.9 44 1-44 105-154 (591)
196 cd04113 Rab4 Rab4 subfamily. 95.2 0.036 7.9E-07 38.7 4.3 43 1-43 111-160 (161)
197 cd04117 Rab15 Rab15 subfamily. 95.2 0.039 8.5E-07 39.1 4.5 43 1-43 111-160 (161)
198 cd04121 Rab40 Rab40 subfamily. 95.0 0.038 8.3E-07 41.0 4.2 44 1-44 116-166 (189)
199 PTZ00369 Ras-like protein; Pro 94.9 0.043 9.2E-07 40.0 4.2 45 1-45 116-167 (189)
200 COG1160 Predicted GTPases [Gen 94.9 0.038 8.2E-07 46.9 4.3 45 1-45 295-351 (444)
201 cd01883 EF1_alpha Eukaryotic e 94.9 0.017 3.7E-07 43.6 2.0 14 21-34 181-194 (219)
202 cd04134 Rho3 Rho3 subfamily. 94.8 0.031 6.8E-07 40.8 3.2 24 21-44 150-173 (189)
203 cd01874 Cdc42 Cdc42 subfamily. 94.8 0.03 6.4E-07 40.6 3.0 22 21-42 151-172 (175)
204 cd04146 RERG_RasL11_like RERG/ 94.8 0.041 8.9E-07 38.7 3.6 44 1-44 112-163 (165)
205 cd01667 TGS_ThrRS_N TGS _ThrRS 94.8 0.24 5.2E-06 28.6 6.5 51 63-121 10-60 (61)
206 KOG0092|consensus 94.7 0.035 7.7E-07 42.4 3.4 50 1-50 116-172 (200)
207 cd04103 Centaurin_gamma Centau 94.7 0.038 8.1E-07 39.5 3.4 43 1-43 105-157 (158)
208 cd04177 RSR1 RSR1 subgroup. R 94.7 0.043 9.2E-07 38.9 3.6 44 1-44 112-163 (168)
209 PRK06944 sulfur carrier protei 94.6 0.051 1.1E-06 33.5 3.4 53 62-121 8-60 (65)
210 cd01873 RhoBTB RhoBTB subfamil 94.5 0.039 8.5E-07 41.1 3.2 22 21-42 172-193 (195)
211 PRK05124 cysN sulfate adenylyl 94.5 0.022 4.7E-07 48.4 2.0 38 1-38 166-218 (474)
212 PRK05659 sulfur carrier protei 94.5 0.049 1.1E-06 33.7 3.2 54 62-121 8-61 (66)
213 PRK09554 feoB ferrous iron tra 94.5 0.041 8.8E-07 49.5 3.7 44 1-44 118-167 (772)
214 PRK12736 elongation factor Tu; 94.4 0.054 1.2E-06 44.7 4.0 45 1-45 134-201 (394)
215 cd00882 Ras_like_GTPase Ras-li 94.4 0.053 1.1E-06 35.7 3.3 41 1-41 108-156 (157)
216 PLN02799 Molybdopterin synthas 94.4 0.17 3.8E-06 32.5 5.6 55 61-121 20-77 (82)
217 cd01884 EF_Tu EF-Tu subfamily. 94.4 0.062 1.3E-06 40.3 4.0 33 1-33 124-171 (195)
218 CHL00189 infB translation init 94.2 0.064 1.4E-06 48.2 4.2 45 1-45 353-410 (742)
219 TIGR01683 thiS thiamine biosyn 94.1 0.061 1.3E-06 33.3 2.9 54 62-121 6-59 (64)
220 PRK12317 elongation factor 1-a 94.1 0.042 9E-07 45.6 2.8 16 21-36 181-196 (425)
221 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 94.0 0.081 1.7E-06 40.9 4.1 24 21-44 163-187 (232)
222 COG1162 Predicted GTPases [Gen 94.0 0.075 1.6E-06 43.1 4.0 48 1-51 116-170 (301)
223 cd01891 TypA_BipA TypA (tyrosi 94.0 0.066 1.4E-06 39.2 3.4 15 21-35 158-172 (194)
224 cd04166 CysN_ATPS CysN_ATPS su 93.9 0.036 7.8E-07 41.4 1.9 16 21-36 170-185 (208)
225 COG3276 SelB Selenocysteine-sp 93.9 0.042 9.1E-07 46.6 2.5 45 1-45 109-162 (447)
226 PF02597 ThiS: ThiS family; I 93.9 0.088 1.9E-06 33.0 3.5 54 62-121 14-72 (77)
227 TIGR00487 IF-2 translation ini 93.8 0.062 1.4E-06 46.9 3.5 42 1-42 193-247 (587)
228 PLN03108 Rab family protein; P 93.8 0.1 2.3E-06 38.9 4.3 44 1-44 117-167 (210)
229 COG0218 Predicted GTPase [Gene 93.7 0.11 2.4E-06 39.8 4.3 46 1-46 141-198 (200)
230 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 93.7 0.072 1.6E-06 39.2 3.1 22 21-42 155-177 (182)
231 cd01857 HSR1_MMR1 HSR1/MMR1. 93.7 0.064 1.4E-06 37.6 2.7 32 1-32 48-84 (141)
232 PRK14845 translation initiatio 93.7 0.068 1.5E-06 49.7 3.6 22 21-42 649-670 (1049)
233 cd00754 MoaD Ubiquitin domain 93.6 0.3 6.4E-06 30.8 5.5 50 63-121 19-75 (80)
234 PRK06437 hypothetical protein; 93.5 0.15 3.3E-06 32.1 4.0 51 61-121 12-62 (67)
235 TIGR00483 EF-1_alpha translati 93.3 0.071 1.5E-06 44.3 2.8 15 21-35 183-197 (426)
236 smart00176 RAN Ran (Ras-relate 93.2 0.16 3.5E-06 38.1 4.5 43 1-44 105-153 (200)
237 TIGR00491 aIF-2 translation in 93.2 0.089 1.9E-06 46.1 3.4 22 21-42 192-213 (590)
238 cd04131 Rnd Rnd subfamily. Th 93.2 0.09 2E-06 38.4 3.0 22 21-42 151-173 (178)
239 PF03308 ArgK: ArgK protein; 93.2 0.059 1.3E-06 42.9 2.1 46 1-46 173-231 (266)
240 PLN03071 GTP-binding nuclear p 93.1 0.12 2.6E-06 39.0 3.7 43 1-44 123-171 (219)
241 COG0370 FeoB Fe2+ transport sy 93.1 0.15 3.2E-06 45.3 4.6 45 1-45 114-164 (653)
242 PRK05506 bifunctional sulfate 92.9 0.066 1.4E-06 46.8 2.2 36 1-36 163-212 (632)
243 COG0050 TufB GTPases - transla 92.9 0.086 1.9E-06 43.3 2.7 67 1-69 134-216 (394)
244 PRK04004 translation initiatio 92.9 0.11 2.3E-06 45.4 3.5 22 21-42 194-215 (586)
245 PRK05306 infB translation init 92.7 0.12 2.6E-06 46.8 3.5 43 1-43 395-450 (787)
246 TIGR02034 CysN sulfate adenyly 92.6 0.074 1.6E-06 44.1 2.0 36 1-36 139-188 (406)
247 KOG0466|consensus 92.2 0.17 3.8E-06 41.9 3.6 50 2-51 186-248 (466)
248 TIGR00485 EF-Tu translation el 92.0 0.17 3.8E-06 41.6 3.5 44 1-44 134-200 (394)
249 cd04104 p47_IIGP_like p47 (47- 92.0 0.23 4.9E-06 36.8 3.8 28 19-46 156-185 (197)
250 PRK12735 elongation factor Tu; 92.0 0.16 3.6E-06 41.9 3.3 45 1-45 134-203 (396)
251 cd00565 ThiS ThiaminS ubiquiti 92.0 0.3 6.4E-06 30.2 3.8 50 62-121 7-60 (65)
252 PF03029 ATP_bind_1: Conserved 91.9 0.19 4.2E-06 38.9 3.5 25 21-45 213-237 (238)
253 COG1703 ArgK Putative periplas 91.8 0.26 5.6E-06 40.3 4.1 61 20-91 229-289 (323)
254 COG5256 TEF1 Translation elong 91.7 0.3 6.5E-06 41.3 4.6 35 1-35 151-201 (428)
255 COG2895 CysN GTPases - Sulfate 91.6 0.11 2.4E-06 43.4 1.9 34 1-34 145-192 (431)
256 COG4917 EutP Ethanolamine util 91.1 0.36 7.9E-06 35.0 3.9 42 1-42 96-143 (148)
257 KOG0094|consensus 91.0 0.37 7.9E-06 37.3 4.1 49 1-49 134-189 (221)
258 PRK00049 elongation factor Tu; 91.0 0.36 7.9E-06 39.9 4.3 45 1-45 134-203 (396)
259 COG2914 Uncharacterized protei 90.8 0.48 1E-05 32.4 4.0 53 60-120 17-74 (99)
260 CHL00071 tufA elongation facto 90.4 0.3 6.4E-06 40.5 3.4 44 1-44 134-210 (409)
261 cd01764 Urm1 Urm1-like ubuitin 90.3 0.71 1.5E-05 31.0 4.6 16 106-121 74-89 (94)
262 TIGR01682 moaD molybdopterin c 90.3 0.84 1.8E-05 29.2 4.8 55 62-121 18-75 (80)
263 cd04115 Rab33B_Rab33A Rab33B/R 90.2 0.7 1.5E-05 32.7 4.8 44 1-44 115-168 (170)
264 KOG0410|consensus 89.5 0.24 5.2E-06 41.2 2.1 26 21-46 317-342 (410)
265 TIGR01394 TypA_BipA GTP-bindin 89.5 0.39 8.5E-06 42.1 3.5 25 21-45 157-191 (594)
266 PLN00043 elongation factor 1-a 89.5 0.33 7.1E-06 41.0 2.9 15 21-35 189-203 (447)
267 PRK08053 sulfur carrier protei 89.4 0.44 9.5E-06 29.6 2.8 54 62-121 8-61 (66)
268 PLN03127 Elongation factor Tu; 89.3 0.51 1.1E-05 39.9 3.9 45 1-45 183-252 (447)
269 TIGR00450 mnmE_trmE_thdF tRNA 88.9 0.58 1.3E-05 39.5 4.1 43 1-45 316-360 (442)
270 PRK08364 sulfur carrier protei 88.6 1 2.2E-05 28.3 4.2 50 62-121 16-65 (70)
271 KOG0461|consensus 88.6 0.97 2.1E-05 38.1 5.0 44 1-44 128-192 (522)
272 KOG1423|consensus 88.5 0.96 2.1E-05 37.4 4.9 56 21-88 247-303 (379)
273 PRK10218 GTP-binding protein; 88.3 0.5 1.1E-05 41.6 3.4 25 21-45 161-195 (607)
274 PTZ00132 GTP-binding nuclear p 87.9 1 2.3E-05 33.3 4.5 45 1-45 119-168 (215)
275 KOG0088|consensus 87.3 0.76 1.6E-05 34.8 3.4 66 1-66 124-201 (218)
276 COG1084 Predicted GTPase [Gene 87.3 0.69 1.5E-05 38.2 3.3 43 1-43 286-334 (346)
277 PF00025 Arf: ADP-ribosylation 86.9 0.78 1.7E-05 33.2 3.2 43 1-43 121-174 (175)
278 PRK07440 hypothetical protein; 86.9 1.8 3.9E-05 27.4 4.5 50 62-121 12-65 (70)
279 PRK11130 moaD molybdopterin sy 86.7 2.2 4.9E-05 27.4 5.0 55 65-120 20-75 (81)
280 PF09138 Urm1: Urm1 (Ubiquitin 86.6 0.5 1.1E-05 32.2 1.9 59 63-122 21-92 (96)
281 PTZ00141 elongation factor 1- 86.6 0.59 1.3E-05 39.4 2.7 15 21-35 189-203 (446)
282 cd04162 Arl9_Arfrp2_like Arl9/ 85.9 0.58 1.3E-05 33.3 2.1 41 1-41 105-162 (164)
283 PF00071 Ras: Ras family; Int 85.9 1 2.2E-05 31.1 3.3 44 1-44 110-160 (162)
284 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 85.8 1.1 2.4E-05 34.3 3.7 23 21-43 151-174 (222)
285 COG2104 ThiS Sulfur transfer p 85.8 2.1 4.6E-05 27.2 4.4 50 62-121 10-63 (68)
286 PLN03126 Elongation factor Tu; 85.6 1.1 2.3E-05 38.3 3.9 43 1-43 203-278 (478)
287 KOG1191|consensus 85.3 0.53 1.2E-05 40.7 1.8 49 1-49 395-454 (531)
288 PRK06488 sulfur carrier protei 85.1 1.4 3E-05 27.1 3.3 48 63-121 9-60 (65)
289 PRK00413 thrS threonyl-tRNA sy 85.0 2.1 4.5E-05 37.3 5.4 51 63-121 11-61 (638)
290 KOG0083|consensus 84.3 1.4 3.1E-05 32.5 3.5 46 1-46 109-161 (192)
291 PRK07696 sulfur carrier protei 84.2 2.2 4.8E-05 26.7 3.9 50 63-121 9-62 (67)
292 cd04161 Arl2l1_Arl13_like Arl2 83.1 1.3 2.8E-05 31.5 2.8 41 1-41 106-165 (167)
293 COG1977 MoaD Molybdopterin con 83.1 1.9 4.1E-05 28.2 3.4 20 102-121 60-79 (84)
294 COG1161 Predicted GTPases [Gen 83.0 1.2 2.5E-05 36.1 2.9 42 1-42 67-114 (322)
295 KOG0460|consensus 82.9 1.5 3.1E-05 36.9 3.4 65 2-68 177-259 (449)
296 PF14451 Ub-Mut7C: Mut7-C ubiq 82.4 1.3 2.7E-05 29.2 2.3 47 63-121 26-75 (81)
297 KOG0078|consensus 82.1 2 4.3E-05 33.2 3.7 40 1-40 123-169 (207)
298 cd04167 Snu114p Snu114p subfam 80.6 1.4 3.1E-05 32.7 2.4 23 22-44 180-210 (213)
299 PRK06083 sulfur carrier protei 79.6 2.4 5.2E-05 28.0 2.9 54 62-121 26-79 (84)
300 PF06940 DUF1287: Domain of un 79.2 2.3 5E-05 31.7 3.0 22 74-95 49-71 (164)
301 KOG0458|consensus 78.6 1.5 3.3E-05 38.6 2.2 34 1-34 321-371 (603)
302 KOG0081|consensus 78.4 3.4 7.5E-05 31.3 3.8 41 2-42 131-178 (219)
303 KOG0084|consensus 78.2 3.1 6.7E-05 32.1 3.5 46 1-46 120-173 (205)
304 cd04178 Nucleostemin_like Nucl 77.9 2.8 6.2E-05 30.7 3.2 14 1-14 36-49 (172)
305 COG5131 URM1 Ubiquitin-like pr 77.6 1.8 3.8E-05 29.4 1.8 16 107-122 77-92 (96)
306 KOG2776|consensus 77.3 3 6.4E-05 34.9 3.4 50 71-120 46-112 (398)
307 COG2229 Predicted GTPase [Gene 77.1 4.1 8.9E-05 31.0 3.9 43 1-43 127-176 (187)
308 KOG0091|consensus 76.6 4.5 9.7E-05 30.8 3.9 46 1-46 122-178 (213)
309 TIGR01687 moaD_arch MoaD famil 74.6 11 0.00023 24.2 5.0 52 63-121 19-83 (88)
310 KOG4146|consensus 73.4 2.6 5.7E-05 28.8 1.8 51 71-122 36-97 (101)
311 PRK05863 sulfur carrier protei 73.2 7.3 0.00016 24.0 3.8 53 62-122 8-61 (65)
312 KOG0395|consensus 72.6 7.1 0.00015 29.3 4.3 46 1-46 114-166 (196)
313 KOG0098|consensus 72.1 3.1 6.8E-05 32.1 2.2 40 2-41 118-164 (216)
314 cd04170 EF-G_bact Elongation f 72.0 3.8 8.3E-05 31.6 2.8 25 21-45 242-266 (268)
315 KOG0072|consensus 70.5 4.2 9E-05 30.4 2.5 45 1-45 125-179 (182)
316 KOG0076|consensus 69.4 4.9 0.00011 30.6 2.7 45 2-46 133-188 (197)
317 COG1217 TypA Predicted membran 66.6 9.4 0.0002 33.4 4.2 44 1-45 126-195 (603)
318 PF00498 FHA: FHA domain; Int 64.7 5 0.00011 24.2 1.7 19 101-119 47-67 (68)
319 cd01882 BMS1 Bms1. Bms1 is an 64.7 11 0.00024 28.6 3.9 33 1-33 139-184 (225)
320 PF14453 ThiS-like: ThiS-like 64.5 18 0.00039 22.3 4.1 50 62-123 8-57 (57)
321 cd01763 Sumo Small ubiquitin-r 64.1 34 0.00073 22.1 5.7 54 63-122 25-83 (87)
322 cd00196 UBQ Ubiquitin-like pro 63.5 21 0.00046 19.1 5.0 55 63-121 11-68 (69)
323 KOG0095|consensus 62.2 4.6 0.0001 30.3 1.4 44 1-44 118-168 (213)
324 PRK08671 methionine aminopepti 62.1 25 0.00054 27.8 5.6 53 66-119 23-80 (291)
325 KOG0093|consensus 61.5 6.8 0.00015 29.4 2.1 44 1-44 132-182 (193)
326 cd04169 RF3 RF3 subfamily. Pe 58.8 8.5 0.00018 30.1 2.4 25 21-45 241-265 (267)
327 PF11976 Rad60-SLD: Ubiquitin- 58.4 14 0.0003 22.6 2.9 57 61-120 12-71 (72)
328 KOG1532|consensus 57.0 16 0.00035 30.1 3.7 26 21-46 240-265 (366)
329 cd01806 Nedd8 Nebb8-like ubiq 57.0 42 0.0009 20.3 5.1 57 63-122 14-72 (76)
330 COG0024 Map Methionine aminope 55.4 28 0.00062 27.6 4.9 50 66-119 32-95 (255)
331 KOG1490|consensus 55.1 9.6 0.00021 33.6 2.3 35 1-35 287-331 (620)
332 KOG4252|consensus 54.8 5.9 0.00013 30.6 0.9 35 1-35 130-171 (246)
333 KOG0087|consensus 53.4 19 0.00042 28.1 3.5 46 1-46 125-181 (222)
334 KOG0070|consensus 52.8 20 0.00044 27.1 3.5 44 2-45 125-178 (181)
335 PF07128 DUF1380: Protein of u 52.2 13 0.00028 27.1 2.2 25 72-96 4-29 (139)
336 KOG2484|consensus 51.7 11 0.00023 32.1 2.0 29 1-29 183-216 (435)
337 PRK11840 bifunctional sulfur c 51.3 16 0.00035 30.0 3.0 50 62-121 8-61 (326)
338 PRK02261 methylaspartate mutas 51.2 85 0.0018 22.2 8.4 32 9-40 42-75 (137)
339 COG0523 Putative GTPases (G3E 50.7 18 0.00038 29.5 3.1 16 1-16 151-166 (323)
340 cd01779 Myosin_IXb_RA ubitquit 50.7 26 0.00057 24.1 3.4 60 47-116 13-76 (105)
341 cd01768 RA RA (Ras-associating 50.4 34 0.00075 21.6 3.9 31 47-80 2-32 (87)
342 COG5258 GTPBP1 GTPase [General 50.4 25 0.00054 30.3 3.9 26 22-48 316-341 (527)
343 cd01885 EF2 EF2 (for archaea a 50.2 21 0.00046 27.2 3.3 12 22-33 189-200 (222)
344 KOG0080|consensus 50.0 15 0.00032 27.9 2.4 37 1-37 123-166 (209)
345 cd04168 TetM_like Tet(M)-like 49.6 15 0.00033 28.1 2.5 24 22-45 212-235 (237)
346 cd01886 EF-G Elongation factor 49.4 14 0.00031 28.9 2.4 25 21-45 244-268 (270)
347 KOG1654|consensus 49.2 55 0.0012 23.0 4.9 34 53-87 37-71 (116)
348 COG1188 Ribosome-associated he 48.5 12 0.00026 25.7 1.5 22 99-120 37-58 (100)
349 PF02601 Exonuc_VII_L: Exonucl 48.4 66 0.0014 25.5 6.1 61 22-85 17-100 (319)
350 PRK12740 elongation factor G; 47.5 15 0.00032 32.3 2.3 26 22-47 239-264 (668)
351 cd01809 Scythe_N Ubiquitin-lik 47.2 61 0.0013 19.3 4.9 58 61-121 12-71 (72)
352 TIGR03636 L23_arch archaeal ri 47.0 78 0.0017 20.5 6.4 56 22-80 16-74 (77)
353 TIGR02988 YaaA_near_RecF S4 do 46.1 19 0.00042 21.4 2.1 20 100-119 38-58 (59)
354 COG3592 Uncharacterized conser 46.1 18 0.00039 23.4 2.0 20 62-82 44-63 (74)
355 cd01066 APP_MetAP A family inc 45.8 77 0.0017 22.3 5.6 53 66-120 22-79 (207)
356 PF03193 DUF258: Protein of un 45.4 23 0.00051 26.0 2.8 22 21-42 14-35 (161)
357 KOG0075|consensus 43.4 58 0.0013 24.5 4.6 44 2-45 129-182 (186)
358 KOG0086|consensus 42.7 28 0.00061 26.3 2.9 45 1-45 120-172 (214)
359 COG0012 Predicted GTPase, prob 42.6 6.5 0.00014 32.9 -0.6 53 36-95 288-349 (372)
360 PF00788 RA: Ras association ( 42.2 55 0.0012 20.5 3.9 34 45-80 3-36 (93)
361 KOG1372|consensus 42.1 54 0.0012 26.8 4.5 54 25-94 248-303 (376)
362 PRK00741 prfC peptide chain re 41.0 25 0.00055 30.4 2.7 26 21-46 250-275 (526)
363 smart00666 PB1 PB1 domain. Pho 40.7 57 0.0012 20.2 3.8 47 60-121 11-57 (81)
364 COG5417 Uncharacterized small 39.6 18 0.00038 23.8 1.2 15 105-119 66-80 (81)
365 TIGR00501 met_pdase_II methion 38.8 67 0.0014 25.5 4.7 51 67-119 27-83 (295)
366 KOG0097|consensus 38.5 26 0.00057 26.1 2.1 35 1-35 122-163 (215)
367 PF09919 DUF2149: Uncharacteri 38.2 18 0.00039 24.3 1.1 20 100-119 71-90 (92)
368 PRK03988 translation initiatio 38.0 46 0.00099 24.0 3.3 50 31-84 5-58 (138)
369 PRK13351 elongation factor G; 37.7 26 0.00056 31.0 2.3 25 22-46 255-279 (687)
370 PRK12444 threonyl-tRNA synthet 37.7 77 0.0017 27.9 5.2 50 64-121 16-65 (639)
371 cd01792 ISG15_repeat1 ISG15 ub 37.3 1.1E+02 0.0023 19.2 5.8 56 64-122 17-76 (80)
372 PF14478 DUF4430: Domain of un 37.2 19 0.00041 22.2 1.1 13 107-119 55-67 (68)
373 KOG1769|consensus 37.2 29 0.00063 23.8 2.0 55 61-121 32-91 (99)
374 COG2247 LytB Putative cell wal 37.1 82 0.0018 26.1 4.9 62 30-91 59-129 (337)
375 TIGR00503 prfC peptide chain r 37.0 33 0.00073 29.7 2.9 26 21-46 251-276 (527)
376 COG1100 GTPase SAR1 and relate 36.8 61 0.0013 23.4 3.9 25 21-45 159-185 (219)
377 KOG0394|consensus 36.4 67 0.0014 24.8 4.1 47 1-47 124-181 (210)
378 KOG0126|consensus 36.2 27 0.00058 26.9 1.9 17 106-122 42-58 (219)
379 smart00314 RA Ras association 36.0 81 0.0017 20.0 4.0 33 45-80 3-35 (90)
380 PTZ00044 ubiquitin; Provisiona 35.8 1E+02 0.0023 18.7 4.9 58 62-122 13-72 (76)
381 KOG0073|consensus 35.3 49 0.0011 25.1 3.1 35 1-35 123-168 (185)
382 TIGR00495 crvDNA_42K 42K curve 34.8 1E+02 0.0023 25.6 5.4 19 67-86 41-59 (389)
383 cd01088 MetAP2 Methionine Amin 34.8 89 0.0019 24.7 4.8 52 67-119 23-79 (291)
384 PTZ00053 methionine aminopepti 34.7 1.1E+02 0.0024 26.5 5.6 53 66-119 179-242 (470)
385 cd01087 Prolidase Prolidase. E 34.1 1.3E+02 0.0029 22.5 5.5 52 66-119 22-78 (243)
386 PRK12896 methionine aminopepti 33.3 1.1E+02 0.0023 23.1 4.9 53 66-120 37-100 (255)
387 PRK00286 xseA exodeoxyribonucl 33.0 1.4E+02 0.003 24.9 5.9 55 22-77 138-209 (438)
388 TIGR00311 aIF-2beta translatio 32.8 53 0.0012 23.5 2.9 49 33-85 2-54 (133)
389 PRK07281 methionine aminopepti 32.2 1.3E+02 0.0028 23.9 5.3 52 66-119 31-97 (286)
390 cd01092 APP-like Similar to Pr 31.9 1.7E+02 0.0036 21.0 5.6 53 66-120 22-80 (208)
391 cd05992 PB1 The PB1 domain is 31.6 99 0.0022 18.9 3.8 46 61-121 11-57 (81)
392 PLN02908 threonyl-tRNA synthet 30.5 74 0.0016 28.4 4.0 49 66-121 64-112 (686)
393 KOG1424|consensus 29.7 41 0.00089 29.6 2.2 29 1-29 211-244 (562)
394 TIGR02475 CobW cobalamin biosy 29.3 29 0.00063 28.3 1.2 16 1-16 179-194 (341)
395 PRK12897 methionine aminopepti 29.2 1.4E+02 0.003 22.7 4.9 51 67-119 32-93 (248)
396 PF00557 Peptidase_M24: Metall 29.0 1.4E+02 0.003 21.6 4.7 52 67-120 22-80 (207)
397 COG2876 AroA 3-deoxy-D-arabino 28.7 64 0.0014 26.1 3.0 18 60-77 151-169 (286)
398 PRK05198 2-dehydro-3-deoxyphos 28.6 2.2E+02 0.0048 22.8 6.0 55 9-81 90-145 (264)
399 smart00363 S4 S4 RNA-binding d 28.6 64 0.0014 17.7 2.3 20 101-120 31-51 (60)
400 COG1570 XseA Exonuclease VII, 28.1 1.4E+02 0.0031 25.6 5.2 50 25-77 141-210 (440)
401 PRK13397 3-deoxy-7-phosphohept 28.0 2.6E+02 0.0057 22.1 6.3 49 12-78 91-140 (250)
402 PLN03158 methionine aminopepti 27.5 1.7E+02 0.0037 24.5 5.5 53 66-120 164-227 (396)
403 cd01617 DCX Ubiquitin-like dom 27.4 94 0.002 19.8 3.2 25 22-46 17-41 (80)
404 PF10948 DUF2635: Protein of u 26.9 33 0.00072 20.3 0.9 10 111-120 35-44 (47)
405 KOG1673|consensus 26.9 69 0.0015 24.3 2.7 39 21-75 162-200 (205)
406 PF13263 PHP_C: PHP-associated 26.7 32 0.0007 20.4 0.8 34 82-116 8-41 (56)
407 cd01812 BAG1_N Ubiquitin-like 26.6 1.5E+02 0.0032 17.6 4.5 54 62-120 12-69 (71)
408 cd04917 ACT_AKiii-LysC-EC_2 AC 25.9 84 0.0018 18.5 2.6 49 34-85 15-63 (64)
409 PF02991 Atg8: Autophagy prote 25.7 1.1E+02 0.0025 20.8 3.5 20 64-84 37-56 (104)
410 PRK15173 peptidase; Provisiona 25.4 1.8E+02 0.0039 23.3 5.1 51 66-119 122-178 (323)
411 TIGR03598 GTPase_YsxC ribosome 25.1 39 0.00084 24.0 1.1 13 1-13 135-147 (179)
412 TIGR01501 MthylAspMutase methy 25.1 2.6E+02 0.0056 19.9 7.5 31 9-39 40-72 (134)
413 PF00240 ubiquitin: Ubiquitin 25.0 1.6E+02 0.0034 17.4 4.6 58 62-122 8-67 (69)
414 cd04922 ACT_AKi-HSDH-ThrA_2 AC 24.7 1.5E+02 0.0032 17.0 4.0 49 34-85 15-65 (66)
415 KOG1144|consensus 24.6 62 0.0013 30.2 2.5 22 22-43 664-685 (1064)
416 cd04920 ACT_AKiii-DAPDC_2 ACT 24.3 1E+02 0.0022 18.4 2.7 48 35-85 15-62 (63)
417 PF01479 S4: S4 domain; Inter 24.1 65 0.0014 18.0 1.8 19 99-117 29-48 (48)
418 cd01787 GRB7_RA RA (RAS-associ 23.9 1.3E+02 0.0029 19.9 3.4 28 46-79 4-31 (85)
419 TIGR00237 xseA exodeoxyribonuc 23.4 2.6E+02 0.0056 23.6 5.9 57 22-79 132-206 (432)
420 COG1206 Gid NAD(FAD)-utilizing 23.2 2.2E+02 0.0047 24.3 5.2 62 28-90 97-158 (439)
421 PTZ00233 variable surface prot 23.1 41 0.00089 29.4 1.0 36 20-57 433-468 (509)
422 cd04919 ACT_AK-Hom3_2 ACT doma 23.0 1.2E+02 0.0026 17.6 2.9 48 35-85 16-65 (66)
423 COG0634 Hpt Hypoxanthine-guani 22.8 75 0.0016 24.0 2.3 56 63-119 37-99 (178)
424 PF08002 DUF1697: Protein of u 22.5 2.8E+02 0.0061 19.5 5.3 58 25-91 13-71 (137)
425 PRK07560 elongation factor EF- 22.5 71 0.0015 28.7 2.4 14 21-34 198-211 (731)
426 TIGR03027 pepcterm_export puta 22.4 2.6E+02 0.0056 20.0 5.1 17 106-122 147-163 (165)
427 cd01803 Ubiquitin Ubiquitin. U 22.3 1.9E+02 0.004 17.3 5.5 57 63-122 14-72 (76)
428 PRK12336 translation initiatio 22.2 88 0.0019 23.7 2.6 49 33-85 3-55 (201)
429 cd01800 SF3a120_C Ubiquitin-li 22.2 2E+02 0.0044 17.7 4.7 55 63-122 11-69 (76)
430 cd06397 PB1_UP1 Uncharacterize 22.0 47 0.001 22.0 0.9 18 104-121 39-56 (82)
431 cd01804 midnolin_N Ubiquitin-l 21.5 2.2E+02 0.0047 17.8 4.4 56 62-121 14-71 (78)
432 CHL00009 petN cytochrome b6/f 21.5 53 0.0012 17.6 0.9 7 92-98 22-28 (29)
433 PRK14747 cytochrome b6-f compl 21.4 54 0.0012 17.5 0.9 7 92-98 22-28 (29)
434 PF03607 DCX: Doublecortin; I 21.3 1.3E+02 0.0029 18.0 2.9 28 24-51 2-33 (60)
435 cd01805 RAD23_N Ubiquitin-like 21.2 2E+02 0.0044 17.3 5.3 56 63-121 14-73 (77)
436 PRK14132 riboflavin kinase; Pr 21.1 63 0.0014 23.0 1.5 14 107-120 112-125 (126)
437 PF13275 S4_2: S4 domain; PDB: 20.8 56 0.0012 20.5 1.1 13 107-119 45-57 (65)
438 KOG3798|consensus 20.7 2.7E+02 0.0058 22.8 5.1 59 34-96 243-301 (343)
439 PF01568 Molydop_binding: Moly 20.6 75 0.0016 20.6 1.8 12 111-122 44-55 (110)
440 cd01807 GDX_N ubiquitin-like d 20.6 2.2E+02 0.0047 17.3 4.7 57 63-122 14-72 (74)
441 PRK00007 elongation factor G; 20.3 81 0.0018 28.1 2.4 25 22-46 257-281 (693)
442 COG4048 Uncharacterized protei 20.2 2.2E+02 0.0048 20.0 4.0 43 66-113 3-48 (123)
No 1
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=100.00 E-value=4.3e-47 Score=304.17 Aligned_cols=121 Identities=44% Similarity=0.848 Sum_probs=117.6
Q ss_pred CcccCCCCCHhhHHHHhcCCCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHh
Q psy2927 1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKL 80 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l~~~~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~I 80 (123)
|+||+|+++.++++.+.+.+++++|||.+++|+++|++.||+.|+++|||||++|..||+++|++|++| |||+|+|++|
T Consensus 245 v~NKiD~~~~e~~~~l~~~~~~v~isa~~~~nld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~G-sTV~Dvc~~I 323 (365)
T COG1163 245 VVNKIDLPGLEELERLARKPNSVPISAKKGINLDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRRG-STVGDVCRKI 323 (365)
T ss_pred EEecccccCHHHHHHHHhccceEEEecccCCCHHHHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCC-CcHHHHHHHH
Confidence 689999999999999977789999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 81 HRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 81 H~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
|+||.++|+||+|||+|+||+|||||+||+|+|||||+|+.+
T Consensus 324 H~~l~~~FryA~VWGkSvk~~~QrVG~dHvLeD~DIV~I~~k 365 (365)
T COG1163 324 HRDLVENFRYARVWGKSVKHPGQRVGLDHVLEDEDIVEIHAK 365 (365)
T ss_pred HHHHHHhcceEEEeccCCCCCccccCcCcCccCCCeEEEeeC
Confidence 999999999999999999999999999999999999999975
No 2
>KOG1486|consensus
Probab=100.00 E-value=1.6e-42 Score=271.85 Aligned_cols=121 Identities=55% Similarity=0.944 Sum_probs=118.6
Q ss_pred CcccCCCCCHhhHHHHhcCCCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHh
Q psy2927 1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKL 80 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l~~~~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~I 80 (123)
|+||||.++.|+++++++.|+.+.||+...+||+.|+|.||+.|++.|||||++|..||+++|++++.| +|++|+|.+|
T Consensus 244 vYnKID~vs~eevdrlAr~PnsvViSC~m~lnld~lle~iWe~l~L~rvYtKk~g~~Pdfdd~~vlr~g-~tve~~C~~i 322 (364)
T KOG1486|consen 244 VYNKIDQVSIEEVDRLARQPNSVVISCNMKLNLDRLLERIWEELNLVRVYTKKKGQRPDFDDPLVLRKG-STVEDVCHRI 322 (364)
T ss_pred EeeccceecHHHHHHHhcCCCcEEEEeccccCHHHHHHHHHHHhceEEEEecCCCCCCCCCCceEEeCC-CcHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 81 HRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 81 H~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
|++|+.+|+||.|||.|+||+|||||+.|.++|+|||+|+.+
T Consensus 323 Hr~l~~qfkyAlVWGtSakhsPQrvgl~h~~~dEdvvqi~~k 364 (364)
T KOG1486|consen 323 HRTLAAQFKYALVWGTSAKHSPQRVGLGHTLEDEDVVQIVKK 364 (364)
T ss_pred HHHHHHhhceeeEeccccccCcceeccccccccccceeeecC
Confidence 999999999999999999999999999999999999999875
No 3
>KOG1487|consensus
Probab=100.00 E-value=2.7e-40 Score=259.89 Aligned_cols=122 Identities=78% Similarity=1.288 Sum_probs=118.3
Q ss_pred CcccCCCCCHhhHHHHhcCCCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHh
Q psy2927 1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKL 80 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l~~~~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~I 80 (123)
++||||.++.|+++-+.+.|+.+||||.++||+|+|++.+|+.|++.|+||+++|.+||++.|++++.+.+||+|+|.+|
T Consensus 237 vLNkIdsISiEELdii~~iphavpISA~~~wn~d~lL~~mweyL~LvriYtkPKgq~PDy~~pVvLs~~~~sv~dfc~~i 316 (358)
T KOG1487|consen 237 VLNKIDSISIEELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLKLVRIYTKPKGQPPDYTSPVVLSSERRSVEDFCNKI 316 (358)
T ss_pred eecccceeeeeccceeeeccceeecccccccchHHHHHHHhhcchheEEecCCCCCCCCCCCCceecCCcccHHHHHHHH
Confidence 58999999999998777889999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 81 HRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 81 H~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
|+++.+.|+||.|||.|+||+|||||++|+|+|+|||+|+++
T Consensus 317 h~~~~~~fk~alvwg~s~kh~pq~vg~~h~l~dedvv~ivkk 358 (358)
T KOG1487|consen 317 HKSILKQFKYALVWGSSVKHNPQRVGKEHVLEDEDVVQIVKK 358 (358)
T ss_pred HHHHHHhhhhheEeccccCcChhhcchhheeccchhhhhccC
Confidence 999999999999999999999999999999999999999975
No 4
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=100.00 E-value=5.5e-34 Score=186.56 Aligned_cols=75 Identities=67% Similarity=1.183 Sum_probs=73.0
Q ss_pred cceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 46 LTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 46 ~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
++|||||++|+.||+.+|++||+| +||+|+|++||+|+.++|+||+|||+|++|.|||||++|+|+|||||+|++
T Consensus 1 lirvytk~~g~~~d~~~~liL~~G-aTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 1 LIRVYTKPKGQEPDFDEPVILRRG-STVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred CEEEEeCCCCCCCCCCCCEEECCC-CCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEeC
Confidence 589999999999999999999997 999999999999999999999999999999999999999999999999985
No 5
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.94 E-value=6.1e-27 Score=153.51 Aligned_cols=69 Identities=19% Similarity=0.317 Sum_probs=65.7
Q ss_pred cceEEeCCCCCC-------CCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEE
Q psy2927 46 LTRIYTKPKGQL-------PDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQ 118 (123)
Q Consensus 46 ~irvytk~~g~~-------pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~ 118 (123)
+++|||+++++. ||+.+||+|++| +|++|+|.+||+||.++|+||+||| +||+|++|+|+|||||+
T Consensus 1 li~VYpv~~~~~~~~~~~g~d~~~~~~l~~g-~tv~d~a~~IH~d~~~~F~~A~v~~------~~~vg~d~~l~d~DVv~ 73 (76)
T cd04938 1 LIPVYPVKNIHTFTNGSGGNVFRDCVLVKKG-TTVGDVARKIHGDLEKGFIEAVGGR------RRLEGKDVILGKNDILK 73 (76)
T ss_pred CEEEEEcCCCccccCcCCCCccceeEEEcCC-CCHHHHHHHHhHHHHhccEEEEEcc------CEEECCCEEecCCCEEE
Confidence 579999999987 999999999997 9999999999999999999999998 79999999999999999
Q ss_pred EEe
Q psy2927 119 IVK 121 (123)
Q Consensus 119 i~~ 121 (123)
|++
T Consensus 74 i~~ 76 (76)
T cd04938 74 FKT 76 (76)
T ss_pred EEC
Confidence 974
No 6
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.93 E-value=4.8e-26 Score=187.55 Aligned_cols=116 Identities=21% Similarity=0.332 Sum_probs=97.1
Q ss_pred CcccCCCCC-HhhHHHHh--cCCCeEEEeecCCcChHH------------------------------------------
Q psy2927 1 MQKVSDQIS-IEELDIIY--KIPHCVPLSAHHKWNFDD------------------------------------------ 35 (123)
Q Consensus 1 V~NKiD~~~-~e~l~~l~--~~~~~v~ISA~~~~gld~------------------------------------------ 35 (123)
|+||+|+.. .+.+..+. .+...+++||..+.++++
T Consensus 223 VlNK~D~~~~~~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r~~E~IRk~l~~~g~ 302 (396)
T PRK09602 223 AANKADLPPAEENIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKKALEYIREVLKKYGG 302 (396)
T ss_pred EEEchhcccchHHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHHHHHHHHHHHHHhCC
Confidence 689999774 33355443 345789999999998765
Q ss_pred ------HHHHHHHhhccceEEeCCCCCC------CCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCc
Q psy2927 36 ------LLEKMWEYLKLTRIYTKPKGQL------PDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQ 103 (123)
Q Consensus 36 ------L~e~i~~~L~~irvytk~~g~~------pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q 103 (123)
|.+++|+.|+++++||.++... ++..+||++|+| +|+.|+|++||+||+++|+||..|+ .+|
T Consensus 303 ~~~~~~i~~~~~~~L~li~~yt~~~~~~~~~~~g~~~~~~~~l~~g-~t~~d~A~~IH~d~~~~fi~A~~~~-----~~~ 376 (396)
T PRK09602 303 TGVQEAINTAVFDLLDMIVVYPVEDENKLTDKKGNVLPDAFLLPKG-STARDLAYKIHTDIGEGFLYAIDAR-----TKR 376 (396)
T ss_pred chHHHHHHHHHHHHhCCEEEEecCcccccccccCcccceeEEECCC-CCHHHHHHHHHHHHHhhceehhccc-----CCc
Confidence 4489999999999999765332 467889999998 9999999999999999999999654 689
Q ss_pred eeCCCceecCCCeEEEEec
Q psy2927 104 KVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 104 ~vg~~~~l~d~Dvv~i~~~ 122 (123)
++|++|+|+|||||+|++.
T Consensus 377 ~~g~~~~l~dgDiv~i~~~ 395 (396)
T PRK09602 377 RIGEDYELKDGDVIKIVST 395 (396)
T ss_pred ccCCCcEecCCCEEEEEeC
Confidence 9999999999999999985
No 7
>PTZ00258 GTP-binding protein; Provisional
Probab=99.92 E-value=2.7e-25 Score=182.88 Aligned_cols=115 Identities=22% Similarity=0.267 Sum_probs=96.5
Q ss_pred CcccC--CCC--CHhhHHHHh----cC--CCeEEEeecCCc-----------------------ChHHHHHHHHHhhccc
Q psy2927 1 MQKVS--DQI--SIEELDIIY----KI--PHCVPLSAHHKW-----------------------NFDDLLEKMWEYLKLT 47 (123)
Q Consensus 1 V~NKi--D~~--~~e~l~~l~----~~--~~~v~ISA~~~~-----------------------gld~L~e~i~~~L~~i 47 (123)
|+||. |+. ..+.++.+. .. ...+++||..+. |+++|.+.+++.|+++
T Consensus 226 v~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL~li 305 (390)
T PTZ00258 226 LVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLLNLI 305 (390)
T ss_pred EEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHhCCE
Confidence 57999 863 333444442 22 348999987654 8999999999999999
Q ss_pred eEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCC----------CCCCC--ceeCCCceecCCC
Q psy2927 48 RIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSS----------VKHQP--QKVGKEHVLNDED 115 (123)
Q Consensus 48 rvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s----------~k~~~--q~vg~~~~l~d~D 115 (123)
++||.++ |..++|++++| +|+.|+|+.||+||+++|++|.||+.+ +|..| +++|+||+|+|||
T Consensus 306 ~ffT~g~----~e~raw~i~~G-sta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGD 380 (390)
T PTZ00258 306 HFFTAGP----DEVRCWTIQKG-TKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGD 380 (390)
T ss_pred EEEcCCC----CceeEEEeCCC-CcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCC
Confidence 9999886 46789999998 999999999999999999999999865 66656 8999999999999
Q ss_pred eEEEE
Q psy2927 116 VVQIV 120 (123)
Q Consensus 116 vv~i~ 120 (123)
||+|.
T Consensus 381 Ii~f~ 385 (390)
T PTZ00258 381 IIFFK 385 (390)
T ss_pred EEEEE
Confidence 99985
No 8
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.81 E-value=9.2e-20 Score=119.50 Aligned_cols=60 Identities=28% Similarity=0.506 Sum_probs=53.3
Q ss_pred CCCC-CCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 53 PKGQ-LPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 53 ~~g~-~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
+.|+ .|| ||+||+| +|+.|+|++||+||.++|++|+++ | .+|++|++|+|+|||||+|+|
T Consensus 16 ~~~~~~~d---~~~l~~G-aTv~D~A~~IHtdi~~~f~~Ai~~----k-~~~~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 16 KEGNVLPD---AFLLPKG-STARDLAYAIHTDIGDGFLHAIDA----R-TGRRVGEDYELKHRDVIKIVS 76 (76)
T ss_pred CCCCCccc---eEEECCC-CCHHHHHHHHHHHHHhcceeeEEe----e-CCEEeCCCcEecCCCEEEEeC
Confidence 3343 455 9999997 999999999999999999999874 5 689999999999999999986
No 9
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.79 E-value=1.9e-19 Score=147.23 Aligned_cols=85 Identities=20% Similarity=0.269 Sum_probs=74.2
Q ss_pred ChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecC----------CCCCC
Q psy2927 32 NFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGS----------SVKHQ 101 (123)
Q Consensus 32 gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~----------s~k~~ 101 (123)
|++.+....++.|++|.+||.++. ..++|++++| +|+.++|+.||+||+++|.+|.|+.. .+|-.
T Consensus 266 ~~~~ii~~~~~~L~li~fftvg~~----evrawti~~G-stA~~aAg~IHsD~~kgFI~AeVi~~~d~~~~g~~~~ak~~ 340 (364)
T PRK09601 266 GLDRLIRAGYELLGLITYFTAGPK----EVRAWTIKKG-TTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAGAKEA 340 (364)
T ss_pred hHHHHHHHHHHHhCCEEEecCCCC----eEEEEEeCCC-CchHHHhhcchhhHhhccEEEEEecHHHHHHcCCHHHHHHc
Confidence 678899999999999999998866 4589999998 99999999999999999999999952 35533
Q ss_pred C-cee-CCCceecCCCeEEEEe
Q psy2927 102 P-QKV-GKEHVLNDEDVVQIVK 121 (123)
Q Consensus 102 ~-q~v-g~~~~l~d~Dvv~i~~ 121 (123)
| .|. |+||+|+|||||.|.-
T Consensus 341 gk~rleGkdY~v~DGDIi~f~f 362 (364)
T PRK09601 341 GKVRLEGKDYIVQDGDVMHFRF 362 (364)
T ss_pred cceeccCCceEecCCCEEEEEc
Confidence 4 566 9999999999999864
No 10
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.65 E-value=3.7e-16 Score=97.86 Aligned_cols=60 Identities=35% Similarity=0.492 Sum_probs=53.5
Q ss_pred ceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 47 TRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 47 irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
|++|+ ++|. ..-+|.| +|+.|+|+.||++++++|++|.||| |+++++|+|+|||+|+|+|
T Consensus 1 I~v~l-pdG~------~~~~~~g-~T~~d~A~~I~~~l~~~~~~A~Vng-------~~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 1 IRVYL-PDGS------IKELPEG-STVLDVAYSIHSSLAKRAVAAKVNG-------QLVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEEE-TTSC------EEEEETT-BBHHHHHHHHSHHHHHCEEEEEETT-------EEEETTSBB-SSEEEEEEE
T ss_pred CEEEC-CCCC------eeeCCCC-CCHHHHHHHHCHHHHhheeEEEEcC-------EECCCCCCcCCCCEEEEEC
Confidence 57888 7776 4449998 9999999999999999999999977 9999999999999999986
No 11
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=99.64 E-value=8.1e-17 Score=107.12 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=54.8
Q ss_pred cceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecC----------CCCCCC--ceeCCCceecC
Q psy2927 46 LTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGS----------SVKHQP--QKVGKEHVLND 113 (123)
Q Consensus 46 ~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~----------s~k~~~--q~vg~~~~l~d 113 (123)
|+..||.++. ..++|++++| +|++++|+.||+||+++|..|.|... .+|-.| ++.|+||+++|
T Consensus 1 L~tffT~G~~----EvRaWti~~G-~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqD 75 (84)
T PF06071_consen 1 LITFFTAGPK----EVRAWTIRKG-TTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQD 75 (84)
T ss_dssp EEEEEEESSS----EEEEEEEETT--BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--T
T ss_pred CceEEccCCC----eEEEEEccCC-CCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeC
Confidence 4678998855 6889999998 99999999999999999999999842 133334 68999999999
Q ss_pred CCeEEEE
Q psy2927 114 EDVVQIV 120 (123)
Q Consensus 114 ~Dvv~i~ 120 (123)
|||+.+.
T Consensus 76 GDIi~f~ 82 (84)
T PF06071_consen 76 GDIIHFR 82 (84)
T ss_dssp TEEEEEE
T ss_pred CCEEEEE
Confidence 9999985
No 12
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.56 E-value=9.4e-16 Score=101.65 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=58.9
Q ss_pred cceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecC----------CCCCCC--ceeCCCceecC
Q psy2927 46 LTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGS----------SVKHQP--QKVGKEHVLND 113 (123)
Q Consensus 46 ~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~----------s~k~~~--q~vg~~~~l~d 113 (123)
++.+||.++. ..++|++++| +|++++|..||+||+++|..|.|... .+|-.| +..|++|+++|
T Consensus 1 L~tffT~G~~----EvRAWti~~g-~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~Yiv~D 75 (83)
T cd04867 1 LISFFTAGPD----EVRAWTIRKG-TKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQD 75 (83)
T ss_pred CccEECCCCC----eEEEEEccCC-CChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCceEeeC
Confidence 4678897654 6889999998 99999999999999999999999842 144344 77999999999
Q ss_pred CCeEEEE
Q psy2927 114 EDVVQIV 120 (123)
Q Consensus 114 ~Dvv~i~ 120 (123)
|||+.+.
T Consensus 76 GDi~~f~ 82 (83)
T cd04867 76 GDIIFFK 82 (83)
T ss_pred CeEEEEE
Confidence 9999873
No 13
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.54 E-value=3.2e-15 Score=122.54 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=74.0
Q ss_pred ChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecC----------CCCCC
Q psy2927 32 NFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGS----------SVKHQ 101 (123)
Q Consensus 32 gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~----------s~k~~ 101 (123)
+++.|....++.|+++.+||.++. ..++|++++| +|++++|+.||+||+++|+.|.|... .+|-.
T Consensus 270 ~~~~ii~~~y~lL~L~sFfT~g~~----EvRaWti~~G-~~Ap~AAG~IHsDfekgFIrAEV~~yddl~~~gs~~~~k~~ 344 (368)
T TIGR00092 270 GLNIIIRARYKLLLLSFFFTGGKE----EVRAWTRKGG-WAAPQAAGIIHTDFETGFIAAEVISWDDFIYKKSSQGAKKG 344 (368)
T ss_pred hHHHHHHHHHHHhCeeEEEcCCCc----eeEEeecCCC-CchhHhcCCcccccccCceEEEEecHHHHHHcCCHHHHHhc
Confidence 778899999999999999997644 6889999998 99999999999999999999999842 13333
Q ss_pred C--ceeCCCceecCCCeEEEEe
Q psy2927 102 P--QKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 102 ~--q~vg~~~~l~d~Dvv~i~~ 121 (123)
| +..|++|+++||||+.|--
T Consensus 345 Gk~r~eGK~YivqDGDIi~f~f 366 (368)
T TIGR00092 345 GLMRLEGKYYVVDDGDVLFFAF 366 (368)
T ss_pred CchhhcCCeEEeeCCeEEEEec
Confidence 4 7799999999999999853
No 14
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=5.5e-14 Score=115.03 Aligned_cols=114 Identities=19% Similarity=0.255 Sum_probs=90.0
Q ss_pred CcccCCCCCHh---hHHHHhc-----CCCeEEEeecCC-----------------------cChHHHHHHHHHhhccceE
Q psy2927 1 MQKVSDQISIE---ELDIIYK-----IPHCVPLSAHHK-----------------------WNFDDLLEKMWEYLKLTRI 49 (123)
Q Consensus 1 V~NKiD~~~~e---~l~~l~~-----~~~~v~ISA~~~-----------------------~gld~L~e~i~~~L~~irv 49 (123)
|+||+|....+ .++++.. -..+||+||..+ .||++|..+-|..|+++..
T Consensus 212 vaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV~~sA~~E~eL~~l~~~~e~~~F~~~~g~~~~~l~~~i~~~y~~lgl~~~ 291 (372)
T COG0012 212 VANVSEDDLANLNEYVKRLKELAAKENAEVVPVSAAIELELRELADAEEKGEFLIELGQKESGLNELIRAGYGLLGLQTY 291 (372)
T ss_pred EEECCcccccchhHHHHHHHHHhhhcCCcEEEeeHHHHHHHHhCccccchhhHHHhcCcchhHHHHHHHHHhcccchhHH
Confidence 57999977533 2555521 125999998754 3778888899999999999
Q ss_pred EeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecC-------C---CCCCCce--eCCCceecCCCeE
Q psy2927 50 YTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGS-------S---VKHQPQK--VGKEHVLNDEDVV 117 (123)
Q Consensus 50 ytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~-------s---~k~~~q~--vg~~~~l~d~Dvv 117 (123)
||.++. ..+.|+++.| +|.+|.|+.||+||.+.|+-|.+... | ++-.|.+ +|+||+|+||||+
T Consensus 292 ft~g~~----evrawti~~g-~kap~aaG~Ih~Dfe~~fi~aevi~~~d~i~~~~~~~Akeag~~r~~GkdY~vqdGDVi 366 (372)
T COG0012 292 FTAGVK----EVRAWTIKDG-SKAPDAAGVIHPDFEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKDYIVQDGDVI 366 (372)
T ss_pred HhhcCC----eEEEEEeccC-CcccccCCccccchhhccccceEeeHHHHHhcCcHHHHHHhcceeeccccceecCCCEE
Confidence 999974 6779999998 99999999999999999999998731 1 2223333 9999999999999
Q ss_pred EE
Q psy2927 118 QI 119 (123)
Q Consensus 118 ~i 119 (123)
.+
T Consensus 367 ~F 368 (372)
T COG0012 367 HF 368 (372)
T ss_pred EE
Confidence 55
No 15
>KOG1491|consensus
Probab=99.21 E-value=5.9e-12 Score=102.49 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecC----------CCCCC
Q psy2927 32 NFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGS----------SVKHQ 101 (123)
Q Consensus 32 gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~----------s~k~~ 101 (123)
.|.+++.+.++.|+++..||.++. ..+.|+|++| ++++++|..||+||.++|..|.|.-. .++..
T Consensus 293 ~L~~iI~~~~~~L~li~fFt~G~~----eV~~WtIr~g-t~ap~aagvihsdf~k~Fi~aev~~f~D~~~~k~e~a~k~~ 367 (391)
T KOG1491|consen 293 ALPKIIKTGYSALNLIVFFTCGED----EVRAWTIRKG-TKAPQAAGVIHSDFEKGFIMAEVMKFEDFKEYKSESACKAA 367 (391)
T ss_pred chhHHHHHHHHhhCceEEEeeCCc----hheeeehhhc-cccccccceeeehhhhhccccceeeeehHHHhcCHHHHHHh
Confidence 567789999999999999999865 6779999998 99999999999999999999998731 12222
Q ss_pred C--ceeCCCceecCCCeEEEEe
Q psy2927 102 P--QKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 102 ~--q~vg~~~~l~d~Dvv~i~~ 121 (123)
| .|+|++|+++||||+.+.-
T Consensus 368 Gk~~~~Gk~yiVedGDIi~FK~ 389 (391)
T KOG1491|consen 368 GKYRQVGKEYIVEDGDIIFFKF 389 (391)
T ss_pred cchhhcCceeeecCCCEEEEee
Confidence 3 7899999999999998854
No 16
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=99.17 E-value=8e-11 Score=103.83 Aligned_cols=63 Identities=22% Similarity=0.287 Sum_probs=55.2
Q ss_pred ccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 45 KLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 45 ~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
..+.||| |+|. ++.||+| ||+-|+|++||+++..++..|.| .|++|.++|+|++||+|+|+|.
T Consensus 404 d~V~VfT-PkG~------~~~Lp~g-aT~lDfAy~iHt~iG~~~~gAkv-------ng~~v~l~~~L~~GD~VeIits 466 (743)
T PRK10872 404 DRVYVFT-PKGD------VVDLPAG-STPLDFAYHIHSDVGHRCIGAKI-------GGRIVPFTYQLQMGDQIEIITQ 466 (743)
T ss_pred CeEEEEC-CCCC------eEEcCCC-CcHHHHHHHHhHHHHhhceEEEE-------CCEECCCCcCCCCCCEEEEEeC
Confidence 5566777 3442 8999998 99999999999999999999986 5689999999999999999985
No 17
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=99.10 E-value=2.6e-10 Score=99.96 Aligned_cols=63 Identities=29% Similarity=0.410 Sum_probs=54.5
Q ss_pred ccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 45 KLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 45 ~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
..+-||| |+| +.+.||+| ||+.|+|+.||+++...+.+|.|+| ++|+++|+|++||+|+|+|.
T Consensus 360 ~~i~vfT-PkG------~~~~lp~g-st~~DfAy~ih~~~g~~~~~a~vng-------~~v~l~~~l~~gd~vei~t~ 422 (683)
T TIGR00691 360 EEIYVFT-PKG------DVVELPSG-STPVDFAYAVHTDVGNKCTGAKVNG-------KIVPLDKELENGDVVEIITG 422 (683)
T ss_pred CceEEEC-CCC------eEEEcCCC-CCHHHHHHHHhHHhHhceeEEEECC-------EECCCCccCCCCCEEEEEeC
Confidence 4456666 333 38999998 9999999999999999999999866 58999999999999999985
No 18
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.05 E-value=2.7e-10 Score=87.64 Aligned_cols=52 Identities=44% Similarity=0.731 Sum_probs=46.9
Q ss_pred CcccCCCCCHhhHHHHhcCCCeEEEeecCCcChHHHHHHHHHhhccceEEeC
Q psy2927 1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTK 52 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l~~~~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk 52 (123)
|+||+|+++.++++.+...++.+++||.+++|+++|.+.||+.|++||||||
T Consensus 182 V~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~L~~irvy~k 233 (233)
T cd01896 182 VYNKIDLISIEELDLLARQPNSVVISAEKGLNLDELKERIWDKLGLIRVYTK 233 (233)
T ss_pred EEECccCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHHHHHHHHhCcEEEecC
Confidence 6899999988887766555678999999999999999999999999999997
No 19
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=98.71 E-value=3.5e-08 Score=86.93 Aligned_cols=52 Identities=23% Similarity=0.213 Sum_probs=47.9
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
.+.||.| ||+-|||++||+++.....-|.| .|+.|.++|+|++||+|+|+|.
T Consensus 397 v~~LP~G-aT~lDFAY~iHt~iG~~c~gAkV-------Ng~~vpL~~~L~~Gd~VeIiT~ 448 (702)
T PRK11092 397 IVELPAG-ATPVDFAYAVHTDIGHACVGARV-------DRQPYPLSQPLTSGQTVEIITA 448 (702)
T ss_pred EEeCCCC-CchhhhhHhhCchhhceeEEEEE-------CCEECCCCccCCCCCEEEEEeC
Confidence 7899998 99999999999999988888876 6688999999999999999985
No 20
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=98.56 E-value=1.5e-07 Score=82.70 Aligned_cols=76 Identities=22% Similarity=0.229 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecC
Q psy2927 34 DDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLND 113 (123)
Q Consensus 34 d~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d 113 (123)
.++++.+-..|-..+||.=.|.. +-+.||.| ||+-|||+.||+++..+-..|.| .|+.|.++|.|+.
T Consensus 374 ~ef~e~~k~dlf~d~VyvfTPkG-----~vi~LP~G-atplDFAY~vHt~iG~~c~gAkV-------nG~ivpl~~~Lk~ 440 (701)
T COG0317 374 GEFLEQLKSDLFPDRVYVFTPKG-----KVIDLPKG-ATPLDFAYAVHTDIGHRCIGAKV-------NGRIVPLTTKLQT 440 (701)
T ss_pred HHHHHHHhhcccCceEEEECCCC-----CEEeCCCC-CcchhhhhhhhchhcceeeEEEE-------CCEEeccceecCC
Confidence 55666666666666776633322 27889998 99999999999999998888886 6688999999999
Q ss_pred CCeEEEEec
Q psy2927 114 EDVVQIVKK 122 (123)
Q Consensus 114 ~Dvv~i~~~ 122 (123)
||+|+|+|.
T Consensus 441 Gd~VEIit~ 449 (701)
T COG0317 441 GDQVEIITS 449 (701)
T ss_pred CCEEEEEeC
Confidence 999999985
No 21
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.11 E-value=1.2e-05 Score=47.41 Aligned_cols=52 Identities=40% Similarity=0.450 Sum_probs=45.6
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
.++.++.| +|+.|++..+|..+.+.+..|.++| +.+++++.|.++|.|++++
T Consensus 9 ~~~~~~~g-~t~~~~~~~~~~~~~~~~~~~~vn~-------~~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 9 SAVELPKG-ATAMDFALKIHTDLGKGFIGALVNG-------QLVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred CEEEcCCC-CCHHHHHHHHHHHHHhheEEEEECC-------EECCCCcCcCCCCEEEEeC
Confidence 47888887 9999999999999999998888754 6689999999999999874
No 22
>COG2262 HflX GTPases [General function prediction only]
Probab=97.90 E-value=2.3e-05 Score=65.30 Aligned_cols=46 Identities=28% Similarity=0.203 Sum_probs=37.5
Q ss_pred CcccCCCCCHhh-HHHHh-cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEE-LDIIY-KIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~-l~~l~-~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|++..+. +..+. ..|..|+|||.+|+|++.|++.|.+.|..
T Consensus 310 v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 310 VLNKIDLLEDEEILAELERGSPNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred EEecccccCchhhhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 689999986654 44443 33469999999999999999999999874
No 23
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=97.52 E-value=0.00012 Score=59.77 Aligned_cols=44 Identities=25% Similarity=0.234 Sum_probs=34.3
Q ss_pred CcccCCCCCHhhHHHH-hcCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEELDII-YKIPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l-~~~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.+.+.+..+ ...+..+++||++|.|+++|.+.|.+.+
T Consensus 307 V~NK~Dl~~~~~v~~~~~~~~~~i~iSAktg~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 307 VYNKIDLLDEPRIERLEEGYPEAVFVSAKTGEGLDLLLEAIAERL 351 (351)
T ss_pred EEEeecCCChHhHHHHHhCCCCEEEEEccCCCCHHHHHHHHHhhC
Confidence 6899999866555444 2334689999999999999999987753
No 24
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.52 E-value=0.0004 Score=54.19 Aligned_cols=45 Identities=20% Similarity=0.002 Sum_probs=34.6
Q ss_pred CcccCCCCCHhhHH----HHh---cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEELD----IIY---KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~l~----~l~---~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+...+.+. .+. .+..++++||++|.|+++|++.+.+.|+
T Consensus 113 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~ 164 (270)
T TIGR00436 113 TRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLP 164 (270)
T ss_pred EEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence 68999998654322 221 2346899999999999999999999874
No 25
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=97.49 E-value=3.3e-05 Score=53.89 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=22.0
Q ss_pred CcccCCCC-CHhhHHHH-hcCC--CeEEEeecCCcCh
Q psy2927 1 MQKVSDQI-SIEELDII-YKIP--HCVPLSAHHKWNF 33 (123)
Q Consensus 1 V~NKiD~~-~~e~l~~l-~~~~--~~v~ISA~~~~gl 33 (123)
|+||+|+. ..+.+++| .+++ .+||+||..++-|
T Consensus 1 AaNK~D~~~a~~ni~kl~~~~~~~~vVp~SA~aEl~L 37 (109)
T PF08438_consen 1 AANKADLPAADENIEKLKEKYPDEPVVPTSAAAELAL 37 (109)
T ss_dssp EEE-GGG-S-HHHHHHHHHHHTT-EEEEE-HHHHHHH
T ss_pred CCccccccccHhHHHHHHHhCCCCceeeccHHHHHHH
Confidence 58999985 56678888 4455 5899999887554
No 26
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=97.48 E-value=0.00075 Score=40.55 Aligned_cols=51 Identities=27% Similarity=0.364 Sum_probs=42.5
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
.+.++.| .|+.+++..++..+.+.+..+.+ .|+.+.+++.|.+||.|++++
T Consensus 10 ~~~~~~~-~t~~~~~~~~~~~~~~~~va~~v-------ng~~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 10 IIELPAG-ATVLDFAYAIHTEIGNRCVGAKV-------NGKLVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred EEEcCCC-CCHHHHHHHHChHhhhheEEEEE-------CCEECCCCCCCCCCCEEEEEC
Confidence 6778887 99999999999888877776665 446688889999999999874
No 27
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.45 E-value=0.00022 Score=52.42 Aligned_cols=45 Identities=27% Similarity=0.278 Sum_probs=32.5
Q ss_pred CcccCCCCCHhh---HHH----H-h--cC-----CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEE---LDI----I-Y--KI-----PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~---l~~----l-~--~~-----~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|++..+. +++ + . .+ .+++|+||.+|+|+++|+++|.+.++
T Consensus 128 vlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 128 VLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp EEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred eeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 589999983321 122 2 1 11 24899999999999999999999885
No 28
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.39 E-value=0.00016 Score=51.36 Aligned_cols=45 Identities=22% Similarity=0.123 Sum_probs=34.3
Q ss_pred CcccCCCCCHhhHHH---Hh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEELDI---IY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~l~~---l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.+.+.... +. . ...++++||.++.|+++|.+.+.+.++
T Consensus 47 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 47 VLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHHHHHHHHHHHh
Confidence 589999876543332 21 1 225799999999999999999999886
No 29
>COG1159 Era GTPase [General function prediction only]
Probab=97.36 E-value=7.1e-05 Score=60.22 Aligned_cols=46 Identities=30% Similarity=0.312 Sum_probs=37.5
Q ss_pred CcccCCCCCHhh-HHHH-h------cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEE-LDII-Y------KIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~-l~~l-~------~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
++||+|...++. +..+ . .|.+++||||.+|.|++.|++.+.++|+.
T Consensus 120 ~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 120 VVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred EEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 579999997665 3333 1 35589999999999999999999999975
No 30
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.35 E-value=0.00032 Score=49.52 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=33.2
Q ss_pred CcccCCCCCHhhHH---HHhc--CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEELD---IIYK--IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~l~---~l~~--~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.....+. .+.. ....+++||++|.|+++|.+.+.+.|
T Consensus 119 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 119 VLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred EEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 58999998655433 2222 22578999999999999999988865
No 31
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.31 E-value=0.00029 Score=51.19 Aligned_cols=46 Identities=15% Similarity=0.029 Sum_probs=34.9
Q ss_pred CcccCCCCCHhhHHHH----h-cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEELDII----Y-KIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l----~-~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+.+.+.+... . ....++++||.++.|+++|.+.+.+.++.
T Consensus 52 VlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~l~~ 102 (171)
T cd01856 52 VLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGKGVKKLLKAAKKLLKD 102 (171)
T ss_pred EEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 6899999866443221 1 22357899999999999999999998754
No 32
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.30 E-value=0.00035 Score=52.17 Aligned_cols=45 Identities=29% Similarity=0.358 Sum_probs=33.6
Q ss_pred CcccCCCCCHhhH----HHH----hc----CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEEL----DII----YK----IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~l----~~l----~~----~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+...+++ +.+ .. ..+++++||.+|+|+++|.+.+.+.++
T Consensus 143 vvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 143 VQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred EEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 5899999864332 222 11 235899999999999999999998774
No 33
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.28 E-value=0.00015 Score=53.36 Aligned_cols=45 Identities=13% Similarity=0.288 Sum_probs=33.1
Q ss_pred CcccCCCCCHhh----HHHHh--------c--CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEE----LDIIY--------K--IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~----l~~l~--------~--~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+++.+. +..+. . ...++++||.+++|+++|.+.+.+.++
T Consensus 67 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 67 VGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred EEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999874322 21111 1 125899999999999999999999875
No 34
>PRK04213 GTP-binding protein; Provisional
Probab=97.23 E-value=0.00044 Score=50.74 Aligned_cols=45 Identities=27% Similarity=0.331 Sum_probs=32.5
Q ss_pred CcccCCCCCHh--hHHHHh---cC--C------CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIE--ELDIIY---KI--P------HCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e--~l~~l~---~~--~------~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+...+ ..+.+. .. + .++++||.+| |+++|.+.|.+.+..
T Consensus 136 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 136 AVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred EEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 68999987443 333331 11 1 3789999999 999999999987653
No 35
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.22 E-value=0.00045 Score=49.36 Aligned_cols=44 Identities=11% Similarity=0.011 Sum_probs=33.0
Q ss_pred CcccCCCCCHhhHHH----Hh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEELDI----IY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~l~~----l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+++.+++.. +. . ...++++||.++.|+++|.+.+.+.+
T Consensus 35 VlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 35 VLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred EEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHHHHHh
Confidence 689999987664432 22 2 23479999999999999999987654
No 36
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.20 E-value=0.00043 Score=59.36 Aligned_cols=45 Identities=22% Similarity=0.236 Sum_probs=34.5
Q ss_pred CcccCCCCC--HhhH----HHHh--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQIS--IEEL----DIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~--~e~l----~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||||+.. ++.+ +.+. ...+++.+||++|.|+++++++|-+.++
T Consensus 134 ViNKIDLP~Adpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 134 VLNKIDLPAADPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred eeecccCCCCCHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCC
Confidence 689999883 4432 2222 2236899999999999999999999875
No 37
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.19 E-value=0.00068 Score=46.79 Aligned_cols=44 Identities=30% Similarity=0.437 Sum_probs=33.3
Q ss_pred CcccCCCCCHhhH-HHHh--cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEEL-DIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~l-~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+...+.. ..+. ...+.+++||+++.|+++|.+.+.+.+
T Consensus 111 v~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 111 VVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred EEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 6899999865543 2332 234689999999999999999988753
No 38
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.18 E-value=0.00035 Score=49.99 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=34.8
Q ss_pred CcccCCCCCHhhHHH----Hh-cCC-CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEELDI----IY-KIP-HCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~l~~----l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+++++++.. +. .++ ..+++||..+.|+++|++.+.+.+..
T Consensus 45 VlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~~l~~~~~~ 96 (157)
T cd01858 45 VLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGKGSLIQLLRQFSKL 96 (157)
T ss_pred EEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccHHHHHHHHHHHHhh
Confidence 689999987665432 21 222 25789999999999999999988764
No 39
>KOG1489|consensus
Probab=97.17 E-value=0.00041 Score=56.75 Aligned_cols=43 Identities=28% Similarity=0.410 Sum_probs=32.8
Q ss_pred CcccCCCCCHh-h-HHHHh-c--CCCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQISIE-E-LDIIY-K--IPHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~~e-~-l~~l~-~--~~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|+||||+.+.+ . +..|. + -++++|+||++++|+++|+..|.+.
T Consensus 318 VaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 318 VANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred EEeccCchhHHHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhhc
Confidence 68999986433 3 46663 2 2468999999999999999988764
No 40
>PRK01777 hypothetical protein; Validated
Probab=97.15 E-value=0.0006 Score=46.37 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=42.4
Q ss_pred hccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcc-------eeEEecCCCCCCCceeCCCceecCCCe
Q psy2927 44 LKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFK-------YALVWGSSVKHQPQKVGKEHVLNDEDV 116 (123)
Q Consensus 44 L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~-------~A~vwg~s~k~~~q~vg~~~~l~d~Dv 116 (123)
+...-+|-.+....+ ..+-++.| +||.|+.... .+...|- -..|| |+.+..|++|+|||.
T Consensus 4 i~v~V~ya~~~~~~~---~~l~vp~G-tTv~dal~~s--gi~~~~pei~~~~~~vgI~-------Gk~v~~d~~L~dGDR 70 (95)
T PRK01777 4 IRVEVVYALPERQYL---QRLTLQEG-ATVEEAIRAS--GLLELRTDIDLAKNKVGIY-------SRPAKLTDVLRDGDR 70 (95)
T ss_pred eEEEEEEECCCceEE---EEEEcCCC-CcHHHHHHHc--CCCccCcccccccceEEEe-------CeECCCCCcCCCCCE
Confidence 334455764433323 47788997 9999998664 3433332 22234 466789999999999
Q ss_pred EEEE
Q psy2927 117 VQIV 120 (123)
Q Consensus 117 v~i~ 120 (123)
|+|.
T Consensus 71 VeIy 74 (95)
T PRK01777 71 VEIY 74 (95)
T ss_pred EEEe
Confidence 9996
No 41
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.13 E-value=0.00065 Score=51.22 Aligned_cols=46 Identities=13% Similarity=0.084 Sum_probs=33.7
Q ss_pred CcccCCCCCH--hhHH----HH---hcCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI--EELD----II---YKIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~--e~l~----~l---~~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
++||+|+.+. ++++ .+ ......+.+||++|+|+++|.+.+.+.+-+
T Consensus 143 ~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~~ 197 (199)
T TIGR00101 143 VINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYALL 197 (199)
T ss_pred EEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 5799999852 2222 22 123468999999999999999999987643
No 42
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.09 E-value=0.00047 Score=47.50 Aligned_cols=44 Identities=23% Similarity=0.199 Sum_probs=33.6
Q ss_pred CcccCCCCCHhhHHHHhcCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l~~~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.............+.+++||.++.|+++|.+.|.+.+
T Consensus 113 v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 113 VLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EEEchhcCCccccccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 58999988655442112234689999999999999999998765
No 43
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=97.09 E-value=0.00086 Score=54.34 Aligned_cols=44 Identities=27% Similarity=0.302 Sum_probs=33.7
Q ss_pred CcccCCCCCHhhHHH----Hh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEELDI----IY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~l~~----l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+...+.++. +. .. ..++++||++++|+++|.+.|.+.|
T Consensus 279 V~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 279 VLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 689999986544332 21 22 2589999999999999999999876
No 44
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.08 E-value=0.00085 Score=47.90 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=31.7
Q ss_pred CcccCCCCCHh--h-HHHHh---cCC--CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIE--E-LDIIY---KIP--HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e--~-l~~l~---~~~--~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.... + .+.+. ..+ ..+++||.+|.|+++|.+.+.+.+
T Consensus 125 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 125 VINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 58999986321 1 22331 222 488999999999999999998875
No 45
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.08 E-value=0.00085 Score=49.43 Aligned_cols=44 Identities=32% Similarity=0.302 Sum_probs=33.5
Q ss_pred CcccCCCCCHhhHHHH-h-cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEELDII-Y-KIPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l-~-~~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+......... . ...+++++||.++.|++++.+.|.+.|
T Consensus 159 V~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 159 VLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred EEEccccCChHHHHHHhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 6899999865544322 2 334689999999999999999988764
No 46
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.07 E-value=0.00079 Score=57.08 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=34.0
Q ss_pred CcccCCCCCHhhHH----HHh--------cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEELD----IIY--------KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~l~----~l~--------~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.+.+.++ .+. ...+++|+||.+|.|++.|++.|.+.++
T Consensus 177 vlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 177 LQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred EEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 58999998654322 221 1235899999999999999999998665
No 47
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.05 E-value=0.00093 Score=48.09 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=33.7
Q ss_pred CcccCCCCCH--hhHHHH-hc--C-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI--EELDII-YK--I-PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~--e~l~~l-~~--~-~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
++||+|+... +.+..+ .. + .+++++||++|.|+++|.+.+.+.+..
T Consensus 97 v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 97 VISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred EEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 5799998643 222222 22 2 368999999999999999999998753
No 48
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.04 E-value=0.00076 Score=47.61 Aligned_cols=44 Identities=27% Similarity=0.353 Sum_probs=32.8
Q ss_pred CcccCCCCCHhhHHH----H-h--cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEELDI----I-Y--KIPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~l~~----l-~--~~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+........ . . .....+++||.++.|+++|.+.+.+.|
T Consensus 126 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 126 VLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYELL 176 (176)
T ss_pred EEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhhC
Confidence 579999986554332 1 1 233689999999999999999987654
No 49
>PRK00089 era GTPase Era; Reviewed
Probab=97.04 E-value=0.0021 Score=50.32 Aligned_cols=45 Identities=31% Similarity=0.427 Sum_probs=34.8
Q ss_pred CcccCCCC-CHhhH----HHHh---cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQI-SIEEL----DIIY---KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~-~~e~l----~~l~---~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+. +.+.+ +.+. .+.+++++||.++.|+++|.+.+.+.++
T Consensus 119 VlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 119 VLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred EEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 58999998 44433 2232 2456899999999999999999999874
No 50
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.00 E-value=0.00098 Score=48.48 Aligned_cols=41 Identities=10% Similarity=0.014 Sum_probs=31.3
Q ss_pred CcccCCCC-CHhhHHHH----h--cCCCeEEEeecCCcChHHHHHHHH
Q psy2927 1 MQKVSDQI-SIEELDII----Y--KIPHCVPLSAHHKWNFDDLLEKMW 41 (123)
Q Consensus 1 V~NKiD~~-~~e~l~~l----~--~~~~~v~ISA~~~~gld~L~e~i~ 41 (123)
|+||+|+. +++++++. . ...+++++||.+|+|+++|.+.+.
T Consensus 95 VITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 95 VITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred EEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 68999998 45555432 1 344689999999999999998774
No 51
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.00 E-value=0.002 Score=52.15 Aligned_cols=73 Identities=10% Similarity=0.100 Sum_probs=48.9
Q ss_pred CcccCCCCCHhh-HHHHh---cCCCeEEEeecCCcChHHHHH-HHHHhhccceEEeCCCCCCCCCcccEEEeCC---CCC
Q psy2927 1 MQKVSDQISIEE-LDIIY---KIPHCVPLSAHHKWNFDDLLE-KMWEYLKLTRIYTKPKGQLPDYQSPVVLHTD---RRS 72 (123)
Q Consensus 1 V~NKiD~~~~e~-l~~l~---~~~~~v~ISA~~~~gld~L~e-~i~~~L~~irvytk~~g~~pd~~~~~~l~~g---~~t 72 (123)
|+||+|+...++ .+.+. .+...+++||..+.|+++|.+ .+.++|+.- | ++.+... ..+
T Consensus 220 VlNK~Dl~~~~~~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~----------~----~f~~~~~~~~~~~ 285 (318)
T cd01899 220 AANKADIPDAENNISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD----------S----DFEITDELGLSEK 285 (318)
T ss_pred EEEHHHccChHHHHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC----------C----CceecccCCCCHH
Confidence 589999875544 33331 345799999999999999998 699999632 2 2333221 136
Q ss_pred HHHHHHHhHHHHHhh
Q psy2927 73 IEDFCNKLHRTIAKE 87 (123)
Q Consensus 73 v~d~a~~IH~d~~~~ 87 (123)
...+.+.|+..+...
T Consensus 286 ~~~~l~~i~d~~~~~ 300 (318)
T cd01899 286 QKEALESIRDEVLDR 300 (318)
T ss_pred HHHHHHHHHHHHHHh
Confidence 677888888644433
No 52
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=96.95 E-value=0.0011 Score=46.67 Aligned_cols=44 Identities=30% Similarity=0.315 Sum_probs=32.7
Q ss_pred CcccCCCCCHhhH----HHH-hc--CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEEL----DII-YK--IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~l----~~l-~~--~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.+.... ..+ .. ..+++++||+++.|+++|.+.+.+.|
T Consensus 120 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 120 VLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred EEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence 5899998755432 222 22 34689999999999999999988764
No 53
>PRK09866 hypothetical protein; Provisional
Probab=96.95 E-value=0.0009 Score=59.28 Aligned_cols=43 Identities=9% Similarity=0.119 Sum_probs=32.6
Q ss_pred CcccCCCCC-----HhhHHHH-----h----cCCCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQIS-----IEELDII-----Y----KIPHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~-----~e~l~~l-----~----~~~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|+||+|+.+ .+.+... . .++.++||||..|.|+++|++.|.+.
T Consensus 295 VVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 295 LVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred EEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 579999875 2333221 1 24579999999999999999999885
No 54
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=96.95 E-value=0.0011 Score=55.76 Aligned_cols=49 Identities=29% Similarity=0.323 Sum_probs=36.7
Q ss_pred CcccCCCCCH-hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhccceE
Q psy2927 1 MQKVSDQISI-EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKLTRI 49 (123)
Q Consensus 1 V~NKiD~~~~-e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~irv 49 (123)
|+||+|+... +.++.+. .+ ..++++||.+++|+++|.+.|++.|...+-
T Consensus 280 V~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 280 VANKMDLPEAEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEETPE 331 (424)
T ss_pred EEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 6899997533 3344442 22 358899999999999999999998876543
No 55
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=96.94 E-value=0.0014 Score=47.72 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=31.8
Q ss_pred CcccCCCCC---HhhHHHHh---cC-----CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQIS---IEELDIIY---KI-----PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~---~e~l~~l~---~~-----~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.. .++++.+. .. ...+++||.++.|+++|.+.+.+.+-
T Consensus 115 v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 115 LANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred EEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 589999863 23444331 11 13678999999999999999887763
No 56
>KOG0462|consensus
Probab=96.93 E-value=0.0014 Score=57.01 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=34.8
Q ss_pred CcccCCCC--CHhhHH----HHhcCC--CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQI--SIEELD----IIYKIP--HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~--~~e~l~----~l~~~~--~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||||+. +++.++ .+...+ +++.+||++|+|.++|+++|-+..+
T Consensus 183 VlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 183 VLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred eeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCC
Confidence 68999998 445543 222222 6899999999999999999999764
No 57
>KOG1487|consensus
Probab=96.91 E-value=0.00021 Score=57.38 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=44.8
Q ss_pred HHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCC--CeEEEEe
Q psy2927 73 IEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDE--DVVQIVK 121 (123)
Q Consensus 73 v~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~--Dvv~i~~ 121 (123)
++|=..++|+..++.|.||++||+++|+.+|.+|.+|-+.+| ||.++..
T Consensus 9 ie~emaktqKNkat~~hlgllkaklaKlrreli~~g~~g~~~gfDV~ktg~ 59 (358)
T KOG1487|consen 9 IEDEMARTQKNKATSFHLGLLKAKLAKLRRELITGGGGGGGGGFDVAKTGD 59 (358)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhhHhhccCCCCCCCCCccceeecc
Confidence 455566999999999999999999999999999999999999 9999864
No 58
>PRK15494 era GTPase Era; Provisional
Probab=96.89 E-value=0.0022 Score=52.06 Aligned_cols=45 Identities=24% Similarity=0.184 Sum_probs=33.3
Q ss_pred CcccCCCCCH--hhHHHH-h-c--CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI--EELDII-Y-K--IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~--e~l~~l-~-~--~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +++... . . +..++++||.+|.|+++|++.+.+.|+
T Consensus 166 ViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 166 LLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAK 216 (339)
T ss_pred EEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence 5799998643 122222 2 2 235899999999999999999999885
No 59
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=96.86 E-value=0.0015 Score=53.10 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=34.2
Q ss_pred CcccCCCCCHhhHH-----HH-hcC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEELD-----II-YKI-PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~l~-----~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|++..++.. .. ... ..++++||.+++|+++|++.|++.+..
T Consensus 277 V~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 277 VLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred EEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 68999987544321 11 122 358999999999999999999998754
No 60
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.86 E-value=0.0013 Score=52.80 Aligned_cols=43 Identities=12% Similarity=0.033 Sum_probs=32.1
Q ss_pred CcccCCCCCH--hhHHHH----h---cCCCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQISI--EELDII----Y---KIPHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~~--e~l~~l----~---~~~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|+||+|+++. .+++.+ . ....++++||.+|+|+++|.+.+.+.
T Consensus 236 VLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 236 LLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred EEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 5899999862 233322 1 23468999999999999999988764
No 61
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=96.85 E-value=0.0017 Score=47.59 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=32.4
Q ss_pred CcccCCCCCHhh----HHHHh----------cC--CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEE----LDIIY----------KI--PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~----l~~l~----------~~--~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+...++ ++.+. .+ ..++++||++|.|+++|++.+-+.+.
T Consensus 126 v~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 126 VLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred EEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 579999875432 12111 11 25899999999999999999988764
No 62
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.83 E-value=0.0018 Score=45.79 Aligned_cols=44 Identities=20% Similarity=0.111 Sum_probs=31.9
Q ss_pred CcccCCCCCH-----hhHHHH-hc--CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDII-YK--IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l-~~--~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... ++...+ .. ....+++||++|.|++++.+.+.+.|
T Consensus 114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 114 IGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred EEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHhC
Confidence 5899998743 223333 22 23579999999999999999988754
No 63
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.83 E-value=0.0019 Score=54.61 Aligned_cols=45 Identities=31% Similarity=0.418 Sum_probs=36.3
Q ss_pred CcccCCCCCHhh-HHHHh--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEE-LDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~-l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|-...++ ...+. .+.+.++|||.+|.|+++|++++.+.|+
T Consensus 118 vvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 118 VVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred EEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 689999875443 33332 4668999999999999999999999985
No 64
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.83 E-value=0.002 Score=44.78 Aligned_cols=45 Identities=16% Similarity=0.109 Sum_probs=32.2
Q ss_pred CcccCCCCCH-----hhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+ ..+ -+++++||.++.|+++|.+.+.+.+.
T Consensus 111 v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 111 VGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred EEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 5899998752 112222 221 25899999999999999999987763
No 65
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=96.80 E-value=0.0017 Score=53.86 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=35.0
Q ss_pred CcccCCCCCHhhH----HHH-hcC---CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEEL----DII-YKI---PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~l----~~l-~~~---~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|++..+++ ..+ ..+ ..++++||+++.|+++|++.|.+.|+.
T Consensus 281 VlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 281 VFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred EEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 6899998865443 223 122 258999999999999999999998864
No 66
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=96.80 E-value=0.0015 Score=56.07 Aligned_cols=49 Identities=16% Similarity=0.076 Sum_probs=36.5
Q ss_pred CcccCCCCCHhhHH-H----HhcC-CCeEEEeecCCcChHHHHHHHHHhhccceE
Q psy2927 1 MQKVSDQISIEELD-I----IYKI-PHCVPLSAHHKWNFDDLLEKMWEYLKLTRI 49 (123)
Q Consensus 1 V~NKiD~~~~e~l~-~----l~~~-~~~v~ISA~~~~gld~L~e~i~~~L~~irv 49 (123)
|+||+|+....++. . +... -.+++|||.+++|+++|++.|++.+...+.
T Consensus 290 VlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 290 VLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred EEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 68999987554322 1 2121 258999999999999999999999877653
No 67
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=96.79 E-value=0.0017 Score=45.73 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=32.7
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. .+ -+.+++||++|.|++++.+.+.+.|.
T Consensus 112 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 112 VGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred EEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 5799998632 2233342 22 25889999999999999999988663
No 68
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0013 Score=54.21 Aligned_cols=46 Identities=35% Similarity=0.486 Sum_probs=35.7
Q ss_pred CcccCCCCCHhh-HH---HHh--------cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEE-LD---IIY--------KIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~-l~---~l~--------~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|.||+|+++.|. ++ ++. +-.++|||||..+.|+|.|+++|.+.++.
T Consensus 146 vQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 146 VQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred EecccceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 469999998764 22 221 22369999999999999999999998763
No 69
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=96.77 E-value=0.0023 Score=44.54 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=29.8
Q ss_pred CcccCCCCCHhh----HHHH----hc----CCCeEEEeecCCcChHHHHHHHHH
Q psy2927 1 MQKVSDQISIEE----LDII----YK----IPHCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 1 V~NKiD~~~~e~----l~~l----~~----~~~~v~ISA~~~~gld~L~e~i~~ 42 (123)
|+||+|+...+. .+.+ .. ....+++||+++.|+++|.+.+.+
T Consensus 110 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 110 VLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 589999876531 1121 11 236899999999999999988754
No 70
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.76 E-value=0.0019 Score=52.67 Aligned_cols=77 Identities=8% Similarity=0.098 Sum_probs=47.4
Q ss_pred CcccCCCCCHhhH----HHH----h--c-----C-CCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccE
Q psy2927 1 MQKVSDQISIEEL----DII----Y--K-----I-PHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPV 64 (123)
Q Consensus 1 V~NKiD~~~~e~l----~~l----~--~-----~-~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~ 64 (123)
|+||+|++..... ..+ . . + ++++++||.++.|+++|.+.|.+.+. |..+.|..-+
T Consensus 200 VVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~----~l~~sg~l~~----- 270 (332)
T PRK09435 200 VINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA----ALTASGEFAA----- 270 (332)
T ss_pred EeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH----HhccCChHHH-----
Confidence 6899998854321 111 1 1 1 56899999999999999999999987 2223332111
Q ss_pred EEeCCCCCHHHHHHHhHHHHHhhc
Q psy2927 65 VLHTDRRSIEDFCNKLHRTIAKEF 88 (123)
Q Consensus 65 ~l~~g~~tv~d~a~~IH~d~~~~f 88 (123)
.++. .....+.+.|...+...|
T Consensus 271 -~r~~-~~~~~v~elire~l~~~~ 292 (332)
T PRK09435 271 -RRRE-QQVDWMWEMVEEGLLDRL 292 (332)
T ss_pred -HHHH-HHHHHHHHHHHHHHHHHH
Confidence 0111 234445666666666655
No 71
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.73 E-value=0.0027 Score=44.73 Aligned_cols=44 Identities=11% Similarity=-0.008 Sum_probs=32.3
Q ss_pred CcccCCCCC-----HhhHHHH-hc--CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQIS-----IEELDII-YK--IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~-----~e~l~~l-~~--~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.. .+++..+ .. ....+++||.+|.|+++|.+.+.+.+
T Consensus 115 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 115 LGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred EEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999972 2333333 22 23688999999999999999988754
No 72
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.72 E-value=0.0025 Score=45.33 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=22.5
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
+++++||++|.|+++|++.+.+.|+
T Consensus 163 ~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 163 PIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred eEEEEecccCcCHHHHHHHHHhhCC
Confidence 5789999999999999999998874
No 73
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=96.71 E-value=0.0024 Score=45.99 Aligned_cols=44 Identities=14% Similarity=0.090 Sum_probs=31.9
Q ss_pred CcccCCCCCHh-----hHHHH-h--cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIE-----ELDII-Y--KIPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e-----~l~~l-~--~~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.... +.+.+ . ..+..+++||.+|.|+++|.+.+.+.+
T Consensus 114 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 114 VAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred EEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 58999986332 22333 2 223468999999999999999998865
No 74
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=96.70 E-value=0.0012 Score=57.70 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=34.1
Q ss_pred CcccCCCCCHhhHH----HH----hc--C--CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEELD----II----YK--I--PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~l~----~l----~~--~--~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+.+++.++ .+ .. + .+++++||.+|.|+++|++.|.+....
T Consensus 110 VlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 110 ALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred EEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 68999998654322 22 11 1 358999999999999999999886654
No 75
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.70 E-value=0.0028 Score=43.86 Aligned_cols=44 Identities=7% Similarity=0.018 Sum_probs=31.3
Q ss_pred CcccCCCCCHh----hHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIE----ELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e----~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.... +...+ ..+ ...+++||++|.|+++|.+.+.+.+
T Consensus 112 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 112 VGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred EEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 58999986432 23333 222 2578999999999999999887654
No 76
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=96.70 E-value=0.0025 Score=43.99 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=28.1
Q ss_pred CcccCCCCCH----hhHHHH-h--cCCCeEEEeecCCcChHHHHHHH
Q psy2927 1 MQKVSDQISI----EELDII-Y--KIPHCVPLSAHHKWNFDDLLEKM 40 (123)
Q Consensus 1 V~NKiD~~~~----e~l~~l-~--~~~~~v~ISA~~~~gld~L~e~i 40 (123)
|+||+|+... ++..++ . ...+.+++||++|.|+++|.+.+
T Consensus 94 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 94 LVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred EEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence 5799998642 222232 2 22358899999999999998776
No 77
>PRK11058 GTPase HflX; Provisional
Probab=96.70 E-value=0.0022 Score=53.80 Aligned_cols=45 Identities=22% Similarity=0.080 Sum_probs=32.8
Q ss_pred CcccCCCCCHh--hHHHH-hcCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIE--ELDII-YKIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e--~l~~l-~~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.... .++.. ...+..+++||++|.|+++|.+.|.+.+.
T Consensus 315 V~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 315 VMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred EEEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 68999987432 12211 12334688999999999999999999874
No 78
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=96.70 E-value=0.0018 Score=45.54 Aligned_cols=42 Identities=12% Similarity=0.088 Sum_probs=29.2
Q ss_pred CcccCCCCCH---hhHHH-Hh--cCC----CeEEEeecCCcChHHHHHHHHH
Q psy2927 1 MQKVSDQISI---EELDI-IY--KIP----HCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 1 V~NKiD~~~~---e~l~~-l~--~~~----~~v~ISA~~~~gld~L~e~i~~ 42 (123)
|+||+|+... +++.. +. ... +.+++||++|.|+++|.+.+.+
T Consensus 106 v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 106 FANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 5899998642 23322 21 111 3899999999999999988754
No 79
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=96.69 E-value=0.0021 Score=53.03 Aligned_cols=48 Identities=25% Similarity=0.245 Sum_probs=35.6
Q ss_pred CcccCCCC-CHhhHHHHh-----cC--CCeEEEeecCCcChHHHHHHHHHhhccce
Q psy2927 1 MQKVSDQI-SIEELDIIY-----KI--PHCVPLSAHHKWNFDDLLEKMWEYLKLTR 48 (123)
Q Consensus 1 V~NKiD~~-~~e~l~~l~-----~~--~~~v~ISA~~~~gld~L~e~i~~~L~~ir 48 (123)
|+||+|++ +.++++.+. .. ...++|||.+++|+++|+..+++.+...+
T Consensus 281 v~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 281 VLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred EEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 68999965 666655442 11 12233999999999999999999998765
No 80
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=96.67 E-value=0.0022 Score=44.47 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=32.4
Q ss_pred CcccCCCCCHhh----HHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEE----LDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~----l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+...+. ...+. .+ .+++++||.++.|+++|.+.+.+.+
T Consensus 107 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 107 ALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred EEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 589999875432 23332 22 2589999999999999999988764
No 81
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.67 E-value=0.0032 Score=43.21 Aligned_cols=44 Identities=30% Similarity=0.382 Sum_probs=32.5
Q ss_pred CcccCCCC-CHhhHHH----Hh-c--CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQI-SIEELDI----IY-K--IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~-~~e~l~~----l~-~--~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+. ..+.+.. +. . ..+++++||.++.|+++|.+.|-+.|
T Consensus 117 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 117 VLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred EEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhhC
Confidence 57999988 4444332 21 2 24689999999999999999987754
No 82
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.66 E-value=0.0021 Score=51.12 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=34.6
Q ss_pred CcccCCCCCHhhH-----------HHH-hc---C-CCeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927 1 MQKVSDQISIEEL-----------DII-YK---I-PHCVPLSAHHKWNFDDLLEKMWEYLKLT 47 (123)
Q Consensus 1 V~NKiD~~~~e~l-----------~~l-~~---~-~~~v~ISA~~~~gld~L~e~i~~~L~~i 47 (123)
|+||+|+...+.. ..+ .+ . ++++++||.++.|+++|.+.|.+.++.+
T Consensus 178 v~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~~~ 240 (300)
T TIGR00750 178 VVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKTFL 240 (300)
T ss_pred EEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 5899999855421 111 11 1 3589999999999999999999987643
No 83
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.66 E-value=0.0034 Score=43.91 Aligned_cols=44 Identities=16% Similarity=0.034 Sum_probs=31.3
Q ss_pred CcccCCCCCH----hhHHHHh--cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI----EELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~----e~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... ++...+. ..-..+++||.+|.|++++++.+.+.+
T Consensus 112 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~~ 161 (161)
T cd01863 112 VGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEKI 161 (161)
T ss_pred EEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence 5799998722 3333332 112488999999999999999887653
No 84
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=96.63 E-value=0.0019 Score=45.08 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=28.6
Q ss_pred CcccCCCCCH---hhHHHHhcC------C-CeEEEeecCCcChHHHHHHHHH
Q psy2927 1 MQKVSDQISI---EELDIIYKI------P-HCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 1 V~NKiD~~~~---e~l~~l~~~------~-~~v~ISA~~~~gld~L~e~i~~ 42 (123)
|+||+|+... +++...... + .++++||++|.|++++.+.|.+
T Consensus 110 v~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 110 FANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 5899998743 223222111 1 2678999999999999988754
No 85
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.61 E-value=0.0036 Score=43.56 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=31.5
Q ss_pred CcccCCCCC-----HhhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQIS-----IEELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~-----~e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|.||+|+.. .++...+ ... ...+.+||.++.|+++|.+.+.+.|
T Consensus 116 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 116 CANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred EEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999862 2223223 222 2478999999999999999998764
No 86
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=96.60 E-value=0.0021 Score=54.12 Aligned_cols=45 Identities=18% Similarity=0.064 Sum_probs=34.5
Q ss_pred CcccCCCCCHhhHHHHhcCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l~~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+.+..... .......+++||++|.|+++|.+.|.+.+..
T Consensus 327 V~NK~DL~~~~~~~-~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 327 VLNKADLTGEIDLE-EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred EEEhhhccccchhh-hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 68999987554332 1122358999999999999999999998753
No 87
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=96.57 E-value=0.0032 Score=45.59 Aligned_cols=44 Identities=14% Similarity=-0.057 Sum_probs=30.2
Q ss_pred CcccCCCCCH---hhHHHHhc-------CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI---EELDIIYK-------IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~---e~l~~l~~-------~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... +++..... ....+++||++|.|++++.+.|.+.+
T Consensus 120 v~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 120 FANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 5899998632 33332211 11355799999999999999887764
No 88
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.55 E-value=0.004 Score=45.96 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=33.4
Q ss_pred CcccCCCC-----CHhhHHHHh-c--CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQI-----SIEELDIIY-K--IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~-----~~e~l~~l~-~--~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|.||+|+. ..+++..+. . +...+.+||++|.|++++.+.+.+.+-
T Consensus 116 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 116 LANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred EEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 57999985 233444442 2 235889999999999999999988763
No 89
>PRK12289 GTPase RsgA; Reviewed
Probab=96.54 E-value=0.002 Score=52.93 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=31.3
Q ss_pred CcccCCCCCHhhHHHH----hcC-CCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQISIEELDII----YKI-PHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l----~~~-~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|+||+|+++.+++..+ ... -.++++||.++.|+++|.+.+...
T Consensus 126 VlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 126 CLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHhhhhccc
Confidence 6899999876543322 121 148899999999999998887653
No 90
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=96.54 E-value=0.0033 Score=48.21 Aligned_cols=22 Identities=14% Similarity=-0.118 Sum_probs=19.0
Q ss_pred CeEEEeecCCcChHHHHHHHHH
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~ 42 (123)
+++++||.+|+|+++|.+.+..
T Consensus 199 pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 199 PIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred cEEEeeCCCccCHHHHHHHHHh
Confidence 5778999999999999987754
No 91
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.51 E-value=0.0049 Score=43.06 Aligned_cols=44 Identities=20% Similarity=0.074 Sum_probs=32.0
Q ss_pred CcccCCCCCH-----hhHHHH-hc-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDII-YK-IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l-~~-~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.+. ++...+ .. ....+++||.+|.|+++|++.+.+.|
T Consensus 112 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 112 VGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4699998732 233333 21 23489999999999999999998875
No 92
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.49 E-value=0.0024 Score=50.18 Aligned_cols=47 Identities=9% Similarity=0.027 Sum_probs=35.2
Q ss_pred CcccCCCCCHhhHHH----Hhc-CCCeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927 1 MQKVSDQISIEELDI----IYK-IPHCVPLSAHHKWNFDDLLEKMWEYLKLT 47 (123)
Q Consensus 1 V~NKiD~~~~e~l~~----l~~-~~~~v~ISA~~~~gld~L~e~i~~~L~~i 47 (123)
|+||+|+++.+.... +.. ...++++||.++.|+++|++.+.+.++..
T Consensus 54 VlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 54 VLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred EEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 689999976653332 222 12579999999999999999999887653
No 93
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.49 E-value=0.0043 Score=43.48 Aligned_cols=45 Identities=18% Similarity=0.090 Sum_probs=32.2
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|.||+|+... +....+. . ....+++||+++.|+++|.+.+.+.+.
T Consensus 111 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 111 VGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred EEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 5799998642 2223332 2 135799999999999999999987653
No 94
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=96.48 E-value=0.0041 Score=43.39 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=31.3
Q ss_pred CcccCCCCCHh-----hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIE-----ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e-----~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.... +...+. .+ .+.+++||++|.|+++|.+.+.+.+
T Consensus 112 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 112 VGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred EEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 57999986432 222332 22 2478999999999999999987754
No 95
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=96.48 E-value=0.004 Score=44.14 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=31.8
Q ss_pred CcccCCCCCH-----hhHHHHh-cCC-CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY-KIP-HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|.||+|+... ++...+. ... ..+.+||+++.|+++|.+.+.+.+
T Consensus 112 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 112 VGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred EEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799998643 2223332 222 488999999999999999998765
No 96
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=96.48 E-value=0.0046 Score=44.16 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=31.7
Q ss_pred CcccCCCCCH-----hhHHHHh-cCC-CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY-KIP-HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... ++...+. .+. +.+.+||++|.|+++|.+.+.+.+
T Consensus 126 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 126 CGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred EEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5799998642 2333342 222 478999999999999999988754
No 97
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.46 E-value=0.0046 Score=50.77 Aligned_cols=45 Identities=18% Similarity=0.131 Sum_probs=32.2
Q ss_pred CcccCCCC-CHhhHHH----Hh------cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQI-SIEELDI----IY------KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~-~~e~l~~----l~------~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|++ +.+..+. +. .+.+++++||++|.|+++|.+.+.+.+.
T Consensus 289 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 289 VVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred EEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 58999998 4433222 21 1236899999999999999888777654
No 98
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=96.46 E-value=0.0058 Score=44.26 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=33.9
Q ss_pred CcccCCCCCHhhHHH----H----hc-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEELDI----I----YK-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~l~~----l----~~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
++||+|+++..+.+. + .. ....+++||+++.|+++|.+.|.+.|.
T Consensus 141 v~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 141 VLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 579999986543221 2 11 346899999999999999999988774
No 99
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=96.45 E-value=0.01 Score=39.60 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=32.6
Q ss_pred EEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcce-------eEEecCCCCCCCceeCCCceecCCCeEEEE
Q psy2927 49 IYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKY-------ALVWGSSVKHQPQKVGKEHVLNDEDVVQIV 120 (123)
Q Consensus 49 vytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~-------A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~ 120 (123)
+|..+..+ ....+-||.| +|+.++... +.+.+.|-- -=|||+ .+..|++|+|||-|+|.
T Consensus 6 ~yA~p~~q---~~~~l~vp~G-tTv~~Ai~~--Sgi~~~~p~idl~~~~vGIfGk-------~~~~d~~L~~GDRVEIY 71 (84)
T PF03658_consen 6 AYALPERQ---VILTLEVPEG-TTVAQAIEA--SGILEQFPEIDLEKNKVGIFGK-------LVKLDTVLRDGDRVEIY 71 (84)
T ss_dssp EEEETTCE---EEEEEEEETT--BHHHHHHH--HTHHHH-TT--TTTSEEEEEE--------S--TT-B--TT-EEEEE
T ss_pred EEECCCeE---EEEEEECCCc-CcHHHHHHH--cCchhhCcccCcccceeeeeee-------EcCCCCcCCCCCEEEEe
Confidence 45544332 4557889998 999999654 445544421 124663 45689999999999995
No 100
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.44 E-value=0.0054 Score=44.88 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=35.0
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhccce
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKLTR 48 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~ir 48 (123)
|+||+|+... ++...+. .+ ...+++||.+|.|+++|.+.+.+.+...+
T Consensus 112 v~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 112 LGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred EEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 5799998632 3334442 22 25899999999999999999998876543
No 101
>PLN00223 ADP-ribosylation factor; Provisional
Probab=96.42 E-value=0.0045 Score=45.30 Aligned_cols=44 Identities=9% Similarity=-0.026 Sum_probs=30.1
Q ss_pred CcccCCCCCH---hhHHHHhcCC-------CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI---EELDIIYKIP-------HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~---e~l~~l~~~~-------~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... +++......+ ..+++||++|+|++++.+.+.+.+
T Consensus 124 v~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 124 FANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred EEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 5799998643 2332221111 244689999999999999988765
No 102
>PTZ00099 rab6; Provisional
Probab=96.41 E-value=0.0064 Score=44.69 Aligned_cols=48 Identities=19% Similarity=0.015 Sum_probs=34.5
Q ss_pred CcccCCCCCH-----hhHHHH-hcCC-CeEEEeecCCcChHHHHHHHHHhhccce
Q psy2927 1 MQKVSDQISI-----EELDII-YKIP-HCVPLSAHHKWNFDDLLEKMWEYLKLTR 48 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l-~~~~-~~v~ISA~~~~gld~L~e~i~~~L~~ir 48 (123)
|.||+|+... ++...+ ..+. ..+.+||++|.|++++.+.|.+.+...+
T Consensus 91 VgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 91 VGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred EEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 5799998532 232232 2222 3678999999999999999999887654
No 103
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.41 E-value=0.0032 Score=44.29 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=29.0
Q ss_pred CcccCCCCCHh---hHHHH-hc--------CCCeEEEeecCCcChHHHHHHHHH
Q psy2927 1 MQKVSDQISIE---ELDII-YK--------IPHCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 1 V~NKiD~~~~e---~l~~l-~~--------~~~~v~ISA~~~~gld~L~e~i~~ 42 (123)
|+||+|+.... ++..+ .. ....+++||++|.|++++.+.|.+
T Consensus 113 v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 113 LANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 58999986442 22222 11 114789999999999999887754
No 104
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=96.40 E-value=0.0019 Score=46.21 Aligned_cols=42 Identities=14% Similarity=0.026 Sum_probs=29.2
Q ss_pred CcccCCCCCH---hhHHHHhc-------CCCeEEEeecCCcChHHHHHHHHH
Q psy2927 1 MQKVSDQISI---EELDIIYK-------IPHCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 1 V~NKiD~~~~---e~l~~l~~-------~~~~v~ISA~~~~gld~L~e~i~~ 42 (123)
|+||+|+... +++..... ..+.+++||++|.|+++|.+.+.+
T Consensus 121 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 121 LANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 5799998642 33333211 114888999999999999887753
No 105
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.40 E-value=0.0063 Score=40.96 Aligned_cols=44 Identities=23% Similarity=0.157 Sum_probs=32.5
Q ss_pred CcccCCCCCHhhHHHH--------h--cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEELDII--------Y--KIPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l--------~--~~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+...+..... . ...+++++||.++.|+++|+..+.+.+
T Consensus 110 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 110 VLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEAL 163 (163)
T ss_pred EEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhhC
Confidence 5899999866543221 1 233689999999999999999887653
No 106
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=96.40 E-value=0.006 Score=42.58 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=31.5
Q ss_pred CcccCCCCCHh-----hHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIE-----ELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e-----~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.... +...+ ... -..+++||.+|.|+++|.+.+.+.+
T Consensus 113 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 113 VGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred EeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 57999986432 22223 121 2579999999999999999988765
No 107
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.38 E-value=0.0042 Score=46.53 Aligned_cols=43 Identities=12% Similarity=0.029 Sum_probs=31.3
Q ss_pred CcccCCCCCH--hhHH----HHh---cCCCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQISI--EELD----IIY---KIPHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~~--e~l~----~l~---~~~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
++||+|+.+. ..+. .+. ...+++++||.++.|+++|.+.+.+.
T Consensus 154 v~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 154 VINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred EEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5899999753 1221 221 22468999999999999999998874
No 108
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.38 E-value=0.0063 Score=42.06 Aligned_cols=44 Identities=11% Similarity=-0.002 Sum_probs=31.8
Q ss_pred CcccCCCCCH-----hhHHHHh--cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... +++..+. .....+++||.++.|++++.+.+.+.+
T Consensus 111 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 111 VGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred EEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 5899998743 2233332 122478999999999999999998764
No 109
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=96.38 E-value=0.0048 Score=46.21 Aligned_cols=46 Identities=11% Similarity=-0.059 Sum_probs=33.2
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+... ++...+. .+ -..+.+||++|.|+++|.+.+.+.+..
T Consensus 115 VgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 115 VGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred EEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5799998643 2233332 22 147889999999999999999987654
No 110
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=96.37 E-value=0.0045 Score=45.30 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=32.6
Q ss_pred CcccCCCCCH-----hhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI-----EELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+... ++...+ ..+ -..+.+||.+|.|+++|.+.+.+.+..
T Consensus 112 vgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 112 VGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred EEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 5799998532 222222 122 247999999999999999999987654
No 111
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.37 E-value=0.0063 Score=42.26 Aligned_cols=43 Identities=21% Similarity=0.153 Sum_probs=30.8
Q ss_pred CcccCCCCCH--hhHH----HHh-c-----CCCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQISI--EELD----IIY-K-----IPHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~~--e~l~----~l~-~-----~~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|+||+|+... +..+ .+. . ...++++||+++.|++++.+.+.+.
T Consensus 119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 119 VVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 5799998755 3322 221 1 2358999999999999999887654
No 112
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=96.36 E-value=0.0031 Score=53.50 Aligned_cols=47 Identities=19% Similarity=0.124 Sum_probs=36.8
Q ss_pred CcccCCCCCHhhHHHH--hcCCCeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927 1 MQKVSDQISIEELDII--YKIPHCVPLSAHHKWNFDDLLEKMWEYLKLT 47 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l--~~~~~~v~ISA~~~~gld~L~e~i~~~L~~i 47 (123)
|+||+|+.++.....+ ..-...+.+||++++|++.|.++|.+.+.-.
T Consensus 330 v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 330 VLNKADLVSKIELESEKLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EEechhcccccccchhhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 5899999977654433 2212489999999999999999999998753
No 113
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.35 E-value=0.0052 Score=43.34 Aligned_cols=44 Identities=14% Similarity=0.079 Sum_probs=31.7
Q ss_pred CcccCCCCCHh-----hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIE-----ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e-----~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.... +...+. .. -+.+++||.+|.|++++.+.+.+.+
T Consensus 113 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 113 VGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred EEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 57999976432 233332 22 2589999999999999999998765
No 114
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=96.35 E-value=0.0042 Score=45.34 Aligned_cols=33 Identities=18% Similarity=0.094 Sum_probs=26.4
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhccceEEeCCCC
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKG 55 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g 55 (123)
..+.+||++|.|+++|.+.+.+.+- -++++.||
T Consensus 149 ~~~e~Sa~~~~~v~~~f~~l~~~~~--~~~~~~~~ 181 (187)
T cd04129 149 KYMECSALTGEGVDDVFEAATRAAL--LVRKSEPG 181 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHHh--cccCcccc
Confidence 5788999999999999999997653 44555555
No 115
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=96.35 E-value=0.0034 Score=52.20 Aligned_cols=45 Identities=33% Similarity=0.371 Sum_probs=33.0
Q ss_pred CcccCCCCCHhhH----HHHh----c----CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEEL----DIIY----K----IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~l----~~l~----~----~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.+.++. +.+. . ....+++||.+|+|+++|++.|.+.++
T Consensus 145 VlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 145 VQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred EEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 5799999864332 2221 1 124799999999999999999998764
No 116
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.35 E-value=0.0053 Score=42.86 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=30.4
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|+||+|+... ++...+. .. -+.+++||+++.|+++|.+.+.+.
T Consensus 112 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 112 VQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred EEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5799998643 2333332 21 257899999999999999887653
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=96.33 E-value=0.0028 Score=44.25 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=28.8
Q ss_pred CcccCCCCC---HhhHHHH---hcCC-----CeEEEeecCCcChHHHHHHHHH
Q psy2927 1 MQKVSDQIS---IEELDII---YKIP-----HCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 1 V~NKiD~~~---~e~l~~l---~~~~-----~~v~ISA~~~~gld~L~e~i~~ 42 (123)
|+||+|+.. .+++... ..+. +.+++||++|.|++++.+.|.+
T Consensus 107 v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 107 LANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 589999853 3333321 1111 3678999999999999988754
No 118
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=96.32 E-value=0.0062 Score=42.44 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=31.4
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... ++...+. .. -..+++||.++.|+++|.+.+.+.|
T Consensus 111 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 111 VGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASAL 161 (161)
T ss_pred EEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHhC
Confidence 5799998432 2233332 21 2478899999999999999998764
No 119
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=96.31 E-value=0.0047 Score=51.14 Aligned_cols=45 Identities=31% Similarity=0.395 Sum_probs=33.2
Q ss_pred CcccCCCCCHhhH----HHHh----c----CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEEL----DIIY----K----IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~l----~~l~----~----~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+++.+.. +.+. . ....+++||.+|.|+++|++.+.+.++
T Consensus 140 vvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 140 VQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred EEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 5899999865432 2221 1 124789999999999999999998765
No 120
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.28 E-value=0.0079 Score=41.41 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=32.3
Q ss_pred CcccCCCCCHhhHH----HH----h---cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEELD----II----Y---KIPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~l~----~l----~---~~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.+.++.. .+ . ..++.+++||+++.|+++|.+.|.+.+
T Consensus 116 v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 116 VLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred EEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 57999997654321 11 1 124688999999999999999998764
No 121
>PRK03003 GTP-binding protein Der; Reviewed
Probab=96.27 E-value=0.005 Score=51.91 Aligned_cols=46 Identities=22% Similarity=0.204 Sum_probs=33.8
Q ss_pred CcccCCCCCHh-hHHHH--hcCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIE-ELDII--YKIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e-~l~~l--~~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+...+ +...+ ..+...+++||.+|.|+++|++.|.+.+..
T Consensus 152 V~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 152 AANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 68999986432 22222 134456899999999999999999988743
No 122
>PRK03003 GTP-binding protein Der; Reviewed
Probab=96.27 E-value=0.0063 Score=51.31 Aligned_cols=45 Identities=20% Similarity=0.119 Sum_probs=32.5
Q ss_pred CcccCCCCCHhh---H-HHH----h--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEE---L-DII----Y--KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~---l-~~l----~--~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+...+. + ..+ . .+.+.+++||++|.|+++|.+.+.+.+.
T Consensus 328 V~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 328 AFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred EEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999975432 1 111 1 2346899999999999999999887764
No 123
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=96.25 E-value=0.0065 Score=43.06 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=21.0
Q ss_pred CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
..+++||+++.|+++|.+.+.+.+
T Consensus 148 ~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 148 KYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHh
Confidence 478899999999999999888754
No 124
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=96.24 E-value=0.0072 Score=43.22 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=30.9
Q ss_pred CcccCCCCC---HhhHHHHhc---C--C---CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQIS---IEELDIIYK---I--P---HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~---~e~l~~l~~---~--~---~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|.||+|+.. .+++..+.. . . ..+++||++|.|++++.+.+.+.|.
T Consensus 106 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 106 FANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred EEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHh
Confidence 579999853 233433321 1 1 3556899999999999999887653
No 125
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.17 E-value=0.005 Score=42.06 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=29.3
Q ss_pred CcccCCCCCHhhHH----HHh--c----CCCeEEEeecCCcChHHHHHHHHH
Q psy2927 1 MQKVSDQISIEELD----IIY--K----IPHCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 1 V~NKiD~~~~e~l~----~l~--~----~~~~v~ISA~~~~gld~L~e~i~~ 42 (123)
|+||+|+....... .+. . ....+++||.+|.|++++.+.+.+
T Consensus 107 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 107 LGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 57999987543222 111 1 124688999999999999998865
No 126
>PLN03118 Rab family protein; Provisional
Probab=96.17 E-value=0.0069 Score=45.09 Aligned_cols=45 Identities=18% Similarity=0.048 Sum_probs=32.2
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|.||+|+... ++...+. .. ...+++||+++.|+++|.+.+.+.+.
T Consensus 126 v~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 126 VGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIM 177 (211)
T ss_pred EEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5799998633 2222231 21 24688999999999999999998873
No 127
>PRK13768 GTPase; Provisional
Probab=96.16 E-value=0.0064 Score=47.37 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=23.1
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
.++++||.++.|+++|.+.|.+.|.
T Consensus 223 ~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 223 RVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHcC
Confidence 5789999999999999999999885
No 128
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.16 E-value=0.0086 Score=49.38 Aligned_cols=44 Identities=20% Similarity=0.135 Sum_probs=31.9
Q ss_pred CcccCCCCCHhhHHHH----h------cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEELDII----Y------KIPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l----~------~~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.+.+..+.+ . .+.+++++||++|.|+++|.+.+.+..
T Consensus 290 v~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 290 VVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred EEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5899999855432222 1 134689999999999999998877644
No 129
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=96.15 E-value=0.007 Score=43.56 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=28.7
Q ss_pred CcccCCCCC---HhhHHHHh---cCC----CeEEEeecCCcChHHHHHHHHH
Q psy2927 1 MQKVSDQIS---IEELDIIY---KIP----HCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 1 V~NKiD~~~---~e~l~~l~---~~~----~~v~ISA~~~~gld~L~e~i~~ 42 (123)
|+||+|+.. .+++.... ... ..+++||++|.|++++.+.|.+
T Consensus 116 v~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 116 FANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 589999863 34443321 111 3678999999999999887653
No 130
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.14 E-value=0.007 Score=53.58 Aligned_cols=46 Identities=24% Similarity=0.187 Sum_probs=33.4
Q ss_pred CcccCCCCCHhh---HHH-Hh------cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEE---LDI-IY------KIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~---l~~-l~------~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+.+.+. ++. +. .+.+.+++||++|.|+++|++.+.+.+..
T Consensus 567 V~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 567 VFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999986433 221 11 12357999999999999999988887653
No 131
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=96.12 E-value=0.0083 Score=42.50 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=29.8
Q ss_pred CcccCCCCCHhh-----HHHHh-cC-CCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQISIEE-----LDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~~e~-----l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|.||+|+....+ ...+. .+ ...+.+||++|+|+++|.+.|.++
T Consensus 114 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 114 VGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred EEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 579999865322 11221 22 247889999999999999988653
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.11 E-value=0.0057 Score=43.33 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=28.4
Q ss_pred CcccCCCCCHhhHHHH----h--cC----CCeEEEeecCCcChHHHHHHHHH
Q psy2927 1 MQKVSDQISIEELDII----Y--KI----PHCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l----~--~~----~~~v~ISA~~~~gld~L~e~i~~ 42 (123)
++||+|+......+.+ . .. .+.+++||++|.|++++.+.|.+
T Consensus 121 v~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 121 FANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 4699998754322222 1 11 13578999999999999988754
No 133
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=96.10 E-value=0.007 Score=52.59 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=35.0
Q ss_pred CcccCCCCCHhhH-------HHH-hc-----CCCeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927 1 MQKVSDQISIEEL-------DII-YK-----IPHCVPLSAHHKWNFDDLLEKMWEYLKLT 47 (123)
Q Consensus 1 V~NKiD~~~~e~l-------~~l-~~-----~~~~v~ISA~~~~gld~L~e~i~~~L~~i 47 (123)
|+||+|+.+.+.+ ..+ .. ..+++++||.+|.|+++|.+.+.+.+..+
T Consensus 109 VlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 109 VITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence 5899999876532 122 11 13589999999999999999998877654
No 134
>KOG1145|consensus
Probab=96.10 E-value=0.011 Score=51.66 Aligned_cols=51 Identities=18% Similarity=0.187 Sum_probs=35.2
Q ss_pred CcccCCCC--CHhhH-HHHh-------cC---CCeEEEeecCCcChHHHHHHHHHhhccceEEe
Q psy2927 1 MQKVSDQI--SIEEL-DIIY-------KI---PHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYT 51 (123)
Q Consensus 1 V~NKiD~~--~~e~l-~~l~-------~~---~~~v~ISA~~~~gld~L~e~i~~~L~~irvyt 51 (123)
++||||.. +++.+ ..|. .+ -.+|||||++|+||+.|.+++.-.-.++-.-.
T Consensus 259 AinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~mdLkA 322 (683)
T KOG1145|consen 259 AINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEVMDLKA 322 (683)
T ss_pred EEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHHhhccc
Confidence 47999987 34432 3332 11 14899999999999999999887655544433
No 135
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=96.10 E-value=0.007 Score=43.87 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=19.8
Q ss_pred CeEEEeecCCcChHHHHHHHHHh
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
..+.+||++|+|+++|.+.+.+.
T Consensus 151 ~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 151 KYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEEEecccccCCHHHHHHHHHHh
Confidence 46889999999999999888764
No 136
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=96.10 E-value=0.0073 Score=42.35 Aligned_cols=44 Identities=16% Similarity=0.063 Sum_probs=31.1
Q ss_pred CcccCCCCCHh-----hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIE-----ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e-----~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|.||+|+.... +...+. .+ -..+++||++|.|+++|.+.+.+.|
T Consensus 112 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 112 VGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred EEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 57999985321 222232 22 2478999999999999999988765
No 137
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.10 E-value=0.011 Score=41.96 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=31.6
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... ++...+. .. ...+++||.++.|++++.+.+.+.+
T Consensus 114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 114 VGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5799998732 2223331 11 2479999999999999999988765
No 138
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.09 E-value=0.01 Score=42.05 Aligned_cols=44 Identities=14% Similarity=-0.105 Sum_probs=30.7
Q ss_pred CcccCCCCCHh--hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIE--ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e--~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.... +...+. .. -+.+++||++|.|+++|.+.+.+.+
T Consensus 110 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 110 VANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred EEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 58999985321 122221 11 2478999999999999999988754
No 139
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.08 E-value=0.0086 Score=43.31 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=20.4
Q ss_pred eEEEeecCCcChHHHHHHHHHhh
Q psy2927 22 CVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 22 ~v~ISA~~~~gld~L~e~i~~~L 44 (123)
.+++||++|+|++++.+.+.+.|
T Consensus 168 ~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 168 VFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EEEeEecCCCChHHHHHHHHhhC
Confidence 68899999999999999987754
No 140
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=96.06 E-value=0.0079 Score=44.11 Aligned_cols=45 Identities=11% Similarity=0.050 Sum_probs=31.0
Q ss_pred CcccCCCCC----Hh------hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQIS----IE------ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~----~e------~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|.||+|+.. .+ +...+. .. ...+++||++|.|+++|.+.+.+.+-
T Consensus 110 VgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 110 VGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred EEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 579999852 11 112221 22 24788999999999999999887663
No 141
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=96.06 E-value=0.0098 Score=46.16 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=32.8
Q ss_pred CcccCCCCCH-----hhHHHH-hcC--CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDII-YKI--PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l-~~~--~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +++..+ ... ...+++||+++.|+++|.+.|.+.+.
T Consensus 119 vgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 119 CGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred EEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 5799998632 233333 211 24799999999999999999998764
No 142
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=96.06 E-value=0.0068 Score=43.09 Aligned_cols=42 Identities=10% Similarity=-0.023 Sum_probs=27.5
Q ss_pred CcccCCCCCH---hhHH-HHh--cCC----CeEEEeecCCcChHHHHHHHHH
Q psy2927 1 MQKVSDQISI---EELD-IIY--KIP----HCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 1 V~NKiD~~~~---e~l~-~l~--~~~----~~v~ISA~~~~gld~L~e~i~~ 42 (123)
|+||+|+... +++. .+. ... ..+++||++|.|++++.+.|.+
T Consensus 107 v~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 107 FANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 5799998632 2322 221 111 2457999999999999887753
No 143
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.06 E-value=0.01 Score=42.43 Aligned_cols=47 Identities=19% Similarity=0.125 Sum_probs=33.9
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKLT 47 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~i 47 (123)
|+||+|+... ++...+. .+ ..++++||.++.|++++.+.+.+.+...
T Consensus 112 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 112 VGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKV 165 (180)
T ss_pred EEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 5799998632 2233332 22 2578999999999999999999887643
No 144
>PRK05433 GTP-binding protein LepA; Provisional
Probab=96.05 E-value=0.0088 Score=52.22 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=32.9
Q ss_pred CcccCCCCCH--hh-HHHHh---cCC--CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI--EE-LDIIY---KIP--HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~--e~-l~~l~---~~~--~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +. .+.+. ..+ +++++||.+|.|+++|++.|.+.++
T Consensus 132 ViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 132 VLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred EEECCCCCcccHHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 5899998632 21 22331 222 4899999999999999999998875
No 145
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.04 E-value=0.0086 Score=47.37 Aligned_cols=46 Identities=15% Similarity=0.060 Sum_probs=34.5
Q ss_pred CcccCCCCCHhhHHHH----hc-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEELDII----YK-IPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l----~~-~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+.+.+..+.. .. ...++++||.++.|+++|++.+.+.++.
T Consensus 57 VlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 57 ILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred EEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 6899998766433222 12 1247999999999999999999888764
No 146
>PRK12288 GTPase RsgA; Reviewed
Probab=96.03 E-value=0.015 Score=47.69 Aligned_cols=43 Identities=14% Similarity=0.093 Sum_probs=31.0
Q ss_pred CcccCCCCCHhh---HHHH-h---cC-CCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQISIEE---LDII-Y---KI-PHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~~e~---l~~l-~---~~-~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|+||+|+++.++ +... . .. -.++++||.++.|+++|.+.+...
T Consensus 156 VlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 156 VLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred EEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHHHHHHHhhC
Confidence 689999986432 2221 1 21 258899999999999999988764
No 147
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=95.99 E-value=0.0076 Score=42.82 Aligned_cols=44 Identities=18% Similarity=0.128 Sum_probs=31.5
Q ss_pred CcccCCCCCHhh-------HHHH-hcC---CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEE-------LDII-YKI---PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~-------l~~l-~~~---~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.+... +..+ ..+ ...+.+||.++.|+++|.+.+.+.+
T Consensus 109 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 109 VGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred EEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence 579999874322 2222 122 3578899999999999999988765
No 148
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=95.98 E-value=0.013 Score=41.36 Aligned_cols=43 Identities=16% Similarity=0.018 Sum_probs=31.2
Q ss_pred CcccCCCCC----HhhHHHH-hcC--CCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQIS----IEELDII-YKI--PHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~----~e~l~~l-~~~--~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|.||+|+.. .+++.++ ..+ ...+++||.+|.|++++.+.+.+.
T Consensus 120 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 120 LGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 579999853 2334444 222 357899999999999999888764
No 149
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.97 E-value=0.007 Score=42.61 Aligned_cols=44 Identities=16% Similarity=0.005 Sum_probs=31.1
Q ss_pred CcccCCCCCHhh-----HHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEE-----LDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~-----l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+....+ ...+. . ....+.+||.+|.|+++|.+.|.+.+
T Consensus 118 v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 118 VGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred EEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 579999864322 12221 1 13478999999999999999988753
No 150
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=95.95 E-value=0.011 Score=41.35 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=21.3
Q ss_pred CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
..+++||.+|+|+++|.+.+.+..
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 142 QIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred cEEEeecccCCCHHHHHHHHHHhh
Confidence 589999999999999999988754
No 151
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=95.95 E-value=0.014 Score=41.04 Aligned_cols=44 Identities=18% Similarity=0.165 Sum_probs=31.3
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... ++...+. .. -..+++||++|.|+++|.+.+.+.+
T Consensus 114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 114 VGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred EEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799998643 2233332 21 2488999999999999999987654
No 152
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=95.94 E-value=0.01 Score=51.77 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=32.8
Q ss_pred CcccCCCCCH--hh-HHHHh---cCC--CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI--EE-LDIIY---KIP--HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~--e~-l~~l~---~~~--~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +. .+.+. ..+ +++++||++|.|+++|++.|.+.++
T Consensus 128 ViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 128 VINKIDLPSADPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred EEECcCCCccCHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 5899998632 22 22331 222 4799999999999999999998875
No 153
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=95.93 E-value=0.013 Score=42.61 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=31.7
Q ss_pred CcccCCCCCHh---------hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIE---------ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e---------~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.... ++..+. .+ ...+++||+++.|+++|.+.+.+.+
T Consensus 111 v~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 111 CGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred EEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 58999986421 122321 21 3478999999999999999999876
No 154
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=95.91 E-value=0.012 Score=45.11 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=21.2
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
..+.+||++|.|+++|.+.+.+.+-
T Consensus 166 ~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 166 MCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999988887553
No 155
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=95.89 E-value=0.016 Score=40.57 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=31.3
Q ss_pred CcccCCCCCHhh-----HHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEE-----LDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~-----l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.+..+ ...+. .+ -..+.+||.++.|+++|.+.+.+.+
T Consensus 113 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 113 VGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred EEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 579999864422 12222 22 2478999999999999999988754
No 156
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=95.89 E-value=0.011 Score=42.73 Aligned_cols=44 Identities=18% Similarity=0.086 Sum_probs=30.8
Q ss_pred CcccCCCCCH-----hhHHHHh-cCC-CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY-KIP-HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|.||+|+... ++...+. ... ..+.+||++|.|++++.+.+.+.+
T Consensus 113 vgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 113 VGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred EEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 5799997532 2333332 222 477899999999999998887654
No 157
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=95.88 E-value=0.0064 Score=43.77 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=28.5
Q ss_pred CcccCCCCC---HhhH-HHHh-c-CC----CeEEEeecCCcChHHHHHHHHH
Q psy2927 1 MQKVSDQIS---IEEL-DIIY-K-IP----HCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 1 V~NKiD~~~---~e~l-~~l~-~-~~----~~v~ISA~~~~gld~L~e~i~~ 42 (123)
++||+|+.. .+++ +.+. . .. ..+++||.+|.|++++.+.+.+
T Consensus 122 v~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 122 LANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 579999863 2333 2221 1 11 3688999999999999887743
No 158
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=95.85 E-value=0.014 Score=39.17 Aligned_cols=41 Identities=17% Similarity=0.153 Sum_probs=29.1
Q ss_pred CcccCCCCCHh---hHHHH-h--cCCCeEEEeecCCcChHHHHHHHH
Q psy2927 1 MQKVSDQISIE---ELDII-Y--KIPHCVPLSAHHKWNFDDLLEKMW 41 (123)
Q Consensus 1 V~NKiD~~~~e---~l~~l-~--~~~~~v~ISA~~~~gld~L~e~i~ 41 (123)
|+||+|+.... ..... . .....+++||..+.|+++|.+.|.
T Consensus 114 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 114 VGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred EEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 57999987632 22222 1 233589999999999999988764
No 159
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=95.84 E-value=0.011 Score=48.60 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=35.5
Q ss_pred CcccCCCCCHhh-HHHHh--cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEE-LDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~-l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+...+. ...+. .+.+.+++||.+|.|+++|++.+.+.+..
T Consensus 113 VvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 113 VANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred EEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 589999875442 23332 34568999999999999999999998854
No 160
>PRK13796 GTPase YqeH; Provisional
Probab=95.83 E-value=0.011 Score=48.53 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=34.2
Q ss_pred CcccCCCCCH----hhHHHH----h---cC--CCeEEEeecCCcChHHHHHHHHHhhccceEE
Q psy2927 1 MQKVSDQISI----EELDII----Y---KI--PHCVPLSAHHKWNFDDLLEKMWEYLKLTRIY 50 (123)
Q Consensus 1 V~NKiD~~~~----e~l~~l----~---~~--~~~v~ISA~~~~gld~L~e~i~~~L~~irvy 50 (123)
|+||+|+++. +.+... . .. .+++++||+++.|+++|.+.|.+...-.++|
T Consensus 102 ViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~ 164 (365)
T PRK13796 102 VGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYREGRDVY 164 (365)
T ss_pred EEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 6899999753 222211 1 11 2578999999999999999998875433333
No 161
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=95.82 E-value=0.017 Score=40.84 Aligned_cols=44 Identities=16% Similarity=0.045 Sum_probs=30.4
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|.||+|+... ++...+. .. -..+.+||.+|.|++++.+.+.+.+
T Consensus 113 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 113 IGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred EEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799998643 2333332 22 2478899999999999887776543
No 162
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=95.82 E-value=0.016 Score=42.27 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=30.4
Q ss_pred CcccCCCC---CHhhHHH-Hh--c-----------CCCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQI---SIEELDI-IY--K-----------IPHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~---~~e~l~~-l~--~-----------~~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|+||+|+. +.+++.. +. . ...++++||.+|.|++++++-+.+.
T Consensus 124 v~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 124 LGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 58999985 3444432 21 1 1137889999999999999988654
No 163
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=95.81 E-value=0.012 Score=44.56 Aligned_cols=52 Identities=23% Similarity=0.173 Sum_probs=36.6
Q ss_pred CcccCCCCCHh-----hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhccceEEeC
Q psy2927 1 MQKVSDQISIE-----ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTK 52 (123)
Q Consensus 1 V~NKiD~~~~e-----~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk 52 (123)
|+||+|+.... +...+. .+ ...+++||.++.|+++|.+.+.+.+.+.+-.+.
T Consensus 112 V~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~~~~ 170 (221)
T cd04148 112 VGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRDSKE 170 (221)
T ss_pred EEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhcccc
Confidence 57999986432 222332 22 247899999999999999999998876444433
No 164
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.80 E-value=0.016 Score=39.99 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=31.4
Q ss_pred CcccCCCCCH-----hhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQISI-----EELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|+||+|+... ++...+ ... .+.+++||.++.|+++|.+.|.+.
T Consensus 110 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 110 VGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred EEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 5799998752 223333 222 368999999999999999998764
No 165
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=95.78 E-value=0.017 Score=43.07 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=31.1
Q ss_pred CcccCCCCCH-----hhHHHH-h-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDII-Y-K-IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l-~-~-~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|.||+|+... +++..+ . . .-..+++||++|.|+++|.+.+.+.+
T Consensus 122 vgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 122 VGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISA 173 (198)
T ss_pred EEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 5799998532 223333 2 1 12479999999999999998888643
No 166
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.78 E-value=0.012 Score=52.23 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=34.3
Q ss_pred CcccCCCCCHh-hHHHH--hcCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIE-ELDII--YKIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e-~l~~l--~~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+...+ ..... ..+...++|||.+|.|+++|++.|.+.+..
T Consensus 389 V~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 389 AVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred EEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 68999987433 22222 134467899999999999999999998753
No 167
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=95.76 E-value=0.017 Score=42.25 Aligned_cols=45 Identities=11% Similarity=0.015 Sum_probs=30.1
Q ss_pred CcccCCCCCH---hhHH-HHh--cCC----CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI---EELD-IIY--KIP----HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~---e~l~-~l~--~~~----~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||.|+... +++. .+. ..+ ..+.+||++|.|++++.+.|.+.+.
T Consensus 124 v~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 124 FANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred EEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHH
Confidence 5799998642 3332 221 111 1346899999999999999987653
No 168
>PRK01889 GTPase RsgA; Reviewed
Probab=95.74 E-value=0.011 Score=48.48 Aligned_cols=41 Identities=12% Similarity=-0.029 Sum_probs=29.6
Q ss_pred CcccCCCCCHh--hHHHHhc---CCCeEEEeecCCcChHHHHHHHH
Q psy2927 1 MQKVSDQISIE--ELDIIYK---IPHCVPLSAHHKWNFDDLLEKMW 41 (123)
Q Consensus 1 V~NKiD~~~~e--~l~~l~~---~~~~v~ISA~~~~gld~L~e~i~ 41 (123)
|+||+|+++.. ..+.+.. .-.++++||.++.|+++|.+.+.
T Consensus 148 VLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 148 VLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred EEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccHHHHHHHhh
Confidence 68999998542 2333321 22589999999999999888774
No 169
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=95.74 E-value=0.017 Score=42.56 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=32.8
Q ss_pred CcccCCCCCH-h-----hHHHH-h-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI-E-----ELDII-Y-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~-e-----~l~~l-~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+... . ..... . .+ ..++.+||.+|.|+++|.+.+.+.+..
T Consensus 110 v~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 110 VGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQANL 164 (198)
T ss_pred EEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence 5899998652 2 11111 1 22 246889999999999999999998764
No 170
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=95.72 E-value=0.014 Score=40.70 Aligned_cols=42 Identities=21% Similarity=0.014 Sum_probs=28.9
Q ss_pred CcccCCCCCHh---hHHHH-hc------CCCeEEEeecCCcChHHHHHHHHH
Q psy2927 1 MQKVSDQISIE---ELDII-YK------IPHCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 1 V~NKiD~~~~e---~l~~l-~~------~~~~v~ISA~~~~gld~L~e~i~~ 42 (123)
|+||+|+.... ++... .. ..+.+++||++|.|++++.+.|.+
T Consensus 106 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 106 FANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 57999987533 33222 11 114788999999999999887754
No 171
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=95.69 E-value=0.013 Score=41.98 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=31.4
Q ss_pred CcccCCCCCHh---hHHHHh--cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIE---ELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e---~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|.||+|+.... +...+. .....+.+||++|.|+++|.+.+.+.+
T Consensus 110 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 110 CGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred EEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 57999986322 111221 223589999999999999999998765
No 172
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=95.69 E-value=0.013 Score=42.23 Aligned_cols=45 Identities=13% Similarity=0.039 Sum_probs=31.9
Q ss_pred CcccCCCCCH---------hhHHHHh-c--CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI---------EELDIIY-K--IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~---------e~l~~l~-~--~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|.||+|+... ++...+. . ....+.+||.+|.|+++|.+.+.+.+-
T Consensus 111 v~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 111 VGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred EEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 5799998642 2333332 2 225789999999999999988887654
No 173
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=95.63 E-value=0.014 Score=47.80 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=31.4
Q ss_pred CcccCCCCCHh----hHHH-----Hhc--C--CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIE----ELDI-----IYK--I--PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e----~l~~-----l~~--~--~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+++.+ .+.. ... . .+++++||++++|+++|.+.+.+..
T Consensus 96 V~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~ 152 (360)
T TIGR03597 96 VGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKAR 152 (360)
T ss_pred EEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 68999987432 2221 111 2 2578899999999999999998763
No 174
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=95.62 E-value=0.019 Score=42.34 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=32.8
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|.||+|+... ++...+. .. -.++.+||.+|.|+++|.+.|.+.+-.
T Consensus 116 VgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 116 VGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred EEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHH
Confidence 5799998643 2223332 22 247889999999999999999887643
No 175
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=95.59 E-value=0.018 Score=40.80 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=20.0
Q ss_pred CeEEEeecCCcChHHHHHHHHHh
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
..+.+||.+|.|+++|.+.+.+.
T Consensus 150 ~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 150 CYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred EEEEecCCcCCCHHHHHHHHHHH
Confidence 47889999999999999988764
No 176
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=95.59 E-value=0.02 Score=44.38 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=29.1
Q ss_pred CcccCCCCCHhhH-----HHHhcC-CCeEEEeecCCcChHHHHHHHHH
Q psy2927 1 MQKVSDQISIEEL-----DIIYKI-PHCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 1 V~NKiD~~~~e~l-----~~l~~~-~~~v~ISA~~~~gld~L~e~i~~ 42 (123)
|+||+|+.+.... +.+... -.++.+||++|.|+++|.+.+.+
T Consensus 73 V~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 73 VLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHhhhcC
Confidence 6899999754322 122222 24788999999999998887654
No 177
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.58 E-value=0.023 Score=39.50 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=32.1
Q ss_pred CcccCCCCCH-----hhHHHH-hc-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDII-YK-IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l-~~-~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... +....+ .. .-..+++||.++.|+++|.+.|.+.+
T Consensus 111 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 111 VGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred EEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5799998652 223333 21 12489999999999999999998876
No 178
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=95.57 E-value=0.016 Score=42.56 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=31.3
Q ss_pred CcccCCCCC---------------HhhHHHHh-cCC--CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQIS---------------IEELDIIY-KIP--HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~---------------~e~l~~l~-~~~--~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|.||+|+.+ .++...++ ... ..+.+||++|.|++++.+.+.+.+
T Consensus 111 vgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 111 VGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred EEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 579999843 22333342 222 368899999999999999998865
No 179
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.48 E-value=0.029 Score=40.65 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=31.4
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. .. -..+.+||+++.|+++|.+.+.+.+-
T Consensus 111 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 111 VANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLII 162 (188)
T ss_pred EEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5799998733 2222332 11 15889999999999998888877653
No 180
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=95.47 E-value=0.023 Score=40.89 Aligned_cols=44 Identities=11% Similarity=0.011 Sum_probs=31.1
Q ss_pred CcccCCCCCHhh-------HHHH-hcCC-CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEE-------LDII-YKIP-HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~-------l~~l-~~~~-~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|.||+|+.+... ...+ ..+. ..+.+||.+|.|+++|.+.+.+.+
T Consensus 112 VgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 112 VGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred EEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999864321 1122 2222 468899999999999999988875
No 181
>PRK00093 GTP-binding protein Der; Reviewed
Probab=95.46 E-value=0.022 Score=47.00 Aligned_cols=45 Identities=24% Similarity=0.294 Sum_probs=33.2
Q ss_pred CcccCCCCCH-hhHHHHh--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-EELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-e~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|.... +....+. .+.+.+++||.+|.|+++|.+.+.+.+.
T Consensus 115 v~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~ 162 (435)
T PRK00093 115 VVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILEELP 162 (435)
T ss_pred EEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCC
Confidence 5899997643 2333332 3446899999999999999999988543
No 182
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=95.46 E-value=0.029 Score=39.89 Aligned_cols=44 Identities=16% Similarity=0.018 Sum_probs=31.0
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... ++...+. . .-..+++||..++|++++.+.+.+.+
T Consensus 115 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 115 IGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred EEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5799998732 2233331 2 22578899999999999988877664
No 183
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=95.45 E-value=0.02 Score=45.35 Aligned_cols=42 Identities=19% Similarity=0.128 Sum_probs=29.2
Q ss_pred CcccCCCCCHhh-HHHH---hcC-CCeEEEeecCCcChHHHHHHHHH
Q psy2927 1 MQKVSDQISIEE-LDII---YKI-PHCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 1 V~NKiD~~~~e~-l~~l---~~~-~~~v~ISA~~~~gld~L~e~i~~ 42 (123)
|+||+|+.+..+ .... ... -.++++||.++.|+++|.+.+..
T Consensus 115 VlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 115 VLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred EEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHHHhhhcc
Confidence 689999876532 1111 121 25789999999999998887654
No 184
>PRK00098 GTPase RsgA; Reviewed
Probab=95.42 E-value=0.022 Score=45.39 Aligned_cols=41 Identities=22% Similarity=0.207 Sum_probs=28.0
Q ss_pred CcccCCCC-CHhhHHHH----hcC-CCeEEEeecCCcChHHHHHHHH
Q psy2927 1 MQKVSDQI-SIEELDII----YKI-PHCVPLSAHHKWNFDDLLEKMW 41 (123)
Q Consensus 1 V~NKiD~~-~~e~l~~l----~~~-~~~v~ISA~~~~gld~L~e~i~ 41 (123)
|+||+|+. +.+....+ ... -.++++||.++.|+++|.+.+.
T Consensus 117 VlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 117 VLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred EEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHhhcc
Confidence 68999987 33332222 121 2478999999999999877664
No 185
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.37 E-value=0.016 Score=44.36 Aligned_cols=44 Identities=9% Similarity=0.019 Sum_probs=31.6
Q ss_pred CcccCCCCCHhh--HHHH----h---cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEE--LDII----Y---KIPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~--l~~l----~---~~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+++.-. ++.. . ...+++++|+++|+|++++++.+...+
T Consensus 148 VInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 148 VINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred EEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 689999986532 2322 1 223689999999999999988776543
No 186
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=95.35 E-value=0.026 Score=42.45 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=30.7
Q ss_pred CcccCCCCCHh-----hHHHHh-cC--CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIE-----ELDIIY-KI--PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e-----~l~~l~-~~--~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|.||+|+.... +.+.+. +. -..+.+||++|.|++++.+.+.+.+
T Consensus 111 VgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 111 VGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred EEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 57999986432 222332 21 2377899999999999988887765
No 187
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.32 E-value=0.018 Score=49.61 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=30.8
Q ss_pred CcccCCCCCH--hhH-HHHh-------cCC---CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI--EEL-DIIY-------KIP---HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~--e~l-~~l~-------~~~---~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
++||||.++. +.+ .++. .+. ..||+||++|+|+++|++.+.-.-+
T Consensus 113 AiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 113 AINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred EEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence 4799999833 221 2232 122 3799999999999999998865443
No 188
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.32 E-value=0.026 Score=42.37 Aligned_cols=45 Identities=18% Similarity=0.143 Sum_probs=32.2
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|.||+|+... ++...+. .+ -..+.+||++|.|++++.+.|.+.+.
T Consensus 115 vgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 115 VGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred EEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4799998643 2333332 22 24788999999999999999887653
No 189
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=95.28 E-value=0.026 Score=40.33 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=18.7
Q ss_pred CeEEEeecCCcChHHHHHHHH
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMW 41 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~ 41 (123)
..+++||++|.|+++|.+.+.
T Consensus 150 ~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 150 EYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred eEEEEeCCCCCCHHHHHHHHH
Confidence 688999999999999988764
No 190
>PLN03110 Rab GTPase; Provisional
Probab=95.27 E-value=0.029 Score=42.20 Aligned_cols=46 Identities=15% Similarity=0.048 Sum_probs=32.9
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+... ++...+. .+ -..+.+||.++.|+++|.+.+.+.+..
T Consensus 123 v~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 123 AGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred EEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5799997532 2333332 22 248889999999999999999887755
No 191
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=95.27 E-value=0.015 Score=40.85 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=19.6
Q ss_pred CeEEEeecCCcChHHHHHHHHH
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~ 42 (123)
..+.+||+++.|+++|.+.|.+
T Consensus 149 ~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 149 GYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEEEeecCCCCCHHHHHHHHhh
Confidence 5788999999999999988764
No 192
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.25 E-value=0.03 Score=38.04 Aligned_cols=41 Identities=17% Similarity=0.055 Sum_probs=29.4
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHH
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMW 41 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~ 41 (123)
|+||+|+..+ +++..+. . ..+++.+||.++.|++++.+.|.
T Consensus 111 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 111 VGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred EEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 5799998622 2333332 2 23689999999999999998875
No 193
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=95.25 E-value=0.023 Score=40.21 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=20.4
Q ss_pred CeEEEeecCCcChHHHHHHHHHh
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
..+++||++|.|+++|.+.+.+.
T Consensus 151 ~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 151 GYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred EEEEeccccCcCHHHHHHHHHHH
Confidence 57889999999999999988764
No 194
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=95.25 E-value=0.026 Score=41.48 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=21.4
Q ss_pred CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
..+.+||++|.|++++.+.+.+.+
T Consensus 153 ~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 153 KYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHH
Confidence 478899999999999999998866
No 195
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=95.23 E-value=0.015 Score=50.66 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=32.3
Q ss_pred CcccCCCCCHh----hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIE----ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e----~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.... +.+.+. .. -+++++||++|.|+++|.+.+.+..
T Consensus 105 VlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 105 ALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred EEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999986332 233442 22 2589999999999999999998764
No 196
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.17 E-value=0.036 Score=38.68 Aligned_cols=43 Identities=16% Similarity=-0.014 Sum_probs=30.5
Q ss_pred CcccCCCCCHh-----hHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQISIE-----ELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~~e-----~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|+||+|+.... +...+ ... ...+.+||.++.|++++.+.+.+.
T Consensus 111 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 111 VGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred EEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 57999986432 22333 222 358889999999999999988764
No 197
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=95.17 E-value=0.039 Score=39.05 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=30.3
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|.||+|+... ++...+. .. .+.+++||+++.|++++.+.|.+.
T Consensus 111 vgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 111 IGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 5799998633 2223332 11 357899999999999999988764
No 198
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=95.01 E-value=0.038 Score=41.04 Aligned_cols=44 Identities=7% Similarity=0.038 Sum_probs=31.9
Q ss_pred CcccCCCCC-----HhhHHHHh-cCC-CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQIS-----IEELDIIY-KIP-HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~-----~e~l~~l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|.||+|+.. .++...+. ... ..+.+||++|.|++++.+.+.+.+
T Consensus 116 VGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 116 VGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred EEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 579999753 33444442 222 478899999999999999888755
No 199
>PTZ00369 Ras-like protein; Provisional
Probab=94.93 E-value=0.043 Score=40.03 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=31.1
Q ss_pred CcccCCCCCH-----hhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|.||+|+... ++...+ ..+ .+.+.+||.+|.|++++.+.+.+.+.
T Consensus 116 v~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 116 VGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred EEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 5799997532 122222 122 24789999999999999988887663
No 200
>COG1160 Predicted GTPases [General function prediction only]
Probab=94.89 E-value=0.038 Score=46.90 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=32.0
Q ss_pred CcccCCCCCHh--hHH----HH-h-----cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIE--ELD----II-Y-----KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e--~l~----~l-~-----~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||-|++..+ ..+ .+ . .+.+.++|||.+|.|++.|.+.+.+...
T Consensus 295 vvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 295 VVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred EEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 68999998642 222 12 1 3457899999999999988877766543
No 201
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=94.86 E-value=0.017 Score=43.58 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=12.7
Q ss_pred CeEEEeecCCcChH
Q psy2927 21 HCVPLSAHHKWNFD 34 (123)
Q Consensus 21 ~~v~ISA~~~~gld 34 (123)
.++++||.+|+|++
T Consensus 181 ~ii~iSA~tg~gi~ 194 (219)
T cd01883 181 PFIPISGLTGDNLI 194 (219)
T ss_pred eEEEeecCcCCCCC
Confidence 48999999999997
No 202
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=94.78 E-value=0.031 Score=40.81 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=21.0
Q ss_pred CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
..+.+||++|.|++++.+.+.+.+
T Consensus 150 ~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 150 RYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred EEEEccCCcCCCHHHHHHHHHHHH
Confidence 468899999999999998888765
No 203
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=94.78 E-value=0.03 Score=40.60 Aligned_cols=22 Identities=14% Similarity=0.145 Sum_probs=19.6
Q ss_pred CeEEEeecCCcChHHHHHHHHH
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~ 42 (123)
..+.+||++|.|++++.+.+.+
T Consensus 151 ~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 151 KYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred EEEEecCCCCCCHHHHHHHHHH
Confidence 4788999999999999988776
No 204
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=94.76 E-value=0.041 Score=38.72 Aligned_cols=44 Identities=11% Similarity=0.076 Sum_probs=30.5
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCC-cChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHK-WNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~-~gld~L~e~i~~~L 44 (123)
|.||+|+... ++...+. . ....+.+||.++ .|++++.+.+.+.+
T Consensus 112 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 112 VGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred EEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 5799997532 2233332 1 124788999999 59999999988765
No 205
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=94.75 E-value=0.24 Score=28.62 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=41.1
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
...++.| +|..+++..++....+.+..|.+ .|+-+.+++.+.+++.|++++
T Consensus 10 ~~~~~~~-~t~~~~~~~~~~~~~~~~v~~~v-------ng~~~dL~~~l~~~~~ie~i~ 60 (61)
T cd01667 10 VKEFPKG-TTPLDIAKSISPGLAKKAVAAKV-------NGELVDLSRPLEEDCELEIIT 60 (61)
T ss_pred EEEeCCC-CCHHHHHHHHHHHHHhheEEEEE-------CCEEecCCcCcCCCCEEEEEe
Confidence 4667786 99999999998887776666654 567788999999999999875
No 206
>KOG0092|consensus
Probab=94.74 E-value=0.035 Score=42.43 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=35.7
Q ss_pred CcccCCCCCHh-----hHHHHhcCC--CeEEEeecCCcChHHHHHHHHHhhccceEE
Q psy2927 1 MQKVSDQISIE-----ELDIIYKIP--HCVPLSAHHKWNFDDLLEKMWEYLKLTRIY 50 (123)
Q Consensus 1 V~NKiD~~~~e-----~l~~l~~~~--~~v~ISA~~~~gld~L~e~i~~~L~~irvy 50 (123)
|.||+|+...- +...++... -.+..||+++.|+++|...|.+.|+..+.-
T Consensus 116 vGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 116 VGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred ecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCcccc
Confidence 57999988632 223332111 356799999999999999999998764433
No 207
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=94.72 E-value=0.038 Score=39.52 Aligned_cols=43 Identities=5% Similarity=-0.033 Sum_probs=29.5
Q ss_pred CcccCCCCC--H-----hhHHHHh-cC--CCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQIS--I-----EELDIIY-KI--PHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~--~-----e~l~~l~-~~--~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|.||.|+.. + ++.+.+. .. -..+.+||+++.|++++.+.+.+.
T Consensus 105 vgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 105 VGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred EeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 579999742 1 2223342 22 257889999999999999887654
No 208
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=94.71 E-value=0.043 Score=38.92 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=30.9
Q ss_pred CcccCCCCCHh-----hHHHH-hcC--CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIE-----ELDII-YKI--PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e-----~l~~l-~~~--~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.... +...+ ..+ -..+++||+++.|++++.+.+...+
T Consensus 112 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 112 VGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred EEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 57999986432 22222 222 2478999999999999999988654
No 209
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=94.63 E-value=0.051 Score=33.47 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=32.8
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
+++-++.+ +|+.++...+-- ...+..|+ +..+-++.-..++.|+|||.|+|++
T Consensus 8 ~~~~~~~~-~tl~~ll~~l~~--~~~~~v~v----N~~~v~~~~~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 8 QTLSLPDG-ATVADALAAYGA--RPPFAVAV----NGDFVARTQHAARALAAGDRLDLVQ 60 (65)
T ss_pred EEEECCCC-CcHHHHHHhhCC--CCCeEEEE----CCEEcCchhcccccCCCCCEEEEEe
Confidence 46777886 899999865432 23332222 2222222233478999999999985
No 210
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=94.54 E-value=0.039 Score=41.11 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=18.9
Q ss_pred CeEEEeecCCcChHHHHHHHHH
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~ 42 (123)
..+.+||++|.|++++.+.+.+
T Consensus 172 ~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 172 PYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred EEEEcCCCCCCCHHHHHHHHHH
Confidence 4778999999999999887765
No 211
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=94.53 E-value=0.022 Score=48.39 Aligned_cols=38 Identities=24% Similarity=0.062 Sum_probs=25.1
Q ss_pred CcccCCCCC--HhhHH----HH----hc-----CCCeEEEeecCCcChHHHHH
Q psy2927 1 MQKVSDQIS--IEELD----II----YK-----IPHCVPLSAHHKWNFDDLLE 38 (123)
Q Consensus 1 V~NKiD~~~--~e~l~----~l----~~-----~~~~v~ISA~~~~gld~L~e 38 (123)
|+||+|+.. .+.++ .+ .. ..+++||||.+|.|++++.+
T Consensus 166 vvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~ 218 (474)
T PRK05124 166 AVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSE 218 (474)
T ss_pred EEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccccc
Confidence 589999883 22222 11 11 13589999999999987653
No 212
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=94.53 E-value=0.049 Score=33.70 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=34.8
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
++..++.| .|+.|+.... .+.... .|... +..+-++..-.++.|+|||.|+|++
T Consensus 8 ~~~~~~~~-~tl~~lL~~l--~~~~~~-vav~v--Ng~iv~r~~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 8 EPRELPDG-ESVAALLARE--GLAGRR-VAVEV--NGEIVPRSQHASTALREGDVVEIVH 61 (66)
T ss_pred eEEEcCCC-CCHHHHHHhc--CCCCCe-EEEEE--CCeEeCHHHcCcccCCCCCEEEEEE
Confidence 36778887 9999998543 222222 22221 3333345556899999999999986
No 213
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=94.48 E-value=0.041 Score=49.54 Aligned_cols=44 Identities=11% Similarity=0.155 Sum_probs=33.2
Q ss_pred CcccCCCCCHh----hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIE----ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e----~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.... +++.+. .+ .+++++||.+++|+++|.+.+.+.+
T Consensus 118 VlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 118 ALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 58999986432 234442 22 2589999999999999999999875
No 214
>PRK12736 elongation factor Tu; Reviewed
Probab=94.40 E-value=0.054 Score=44.71 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=31.0
Q ss_pred CcccCCCCCHhhH-H----HHh------cC----CCeEEEeecCCc--------ChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEEL-D----IIY------KI----PHCVPLSAHHKW--------NFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~l-~----~l~------~~----~~~v~ISA~~~~--------gld~L~e~i~~~L~ 45 (123)
|+||+|+.+.+++ + .+. .+ .+++++||.+|. ++++|++.+.+.++
T Consensus 134 viNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 134 FLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred EEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 4899999854322 1 121 12 258999999983 67899999888765
No 215
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=94.40 E-value=0.053 Score=35.68 Aligned_cols=41 Identities=15% Similarity=0.016 Sum_probs=29.4
Q ss_pred CcccCCCCCHhhHHH------Hh--cCCCeEEEeecCCcChHHHHHHHH
Q psy2927 1 MQKVSDQISIEELDI------IY--KIPHCVPLSAHHKWNFDDLLEKMW 41 (123)
Q Consensus 1 V~NKiD~~~~e~l~~------l~--~~~~~v~ISA~~~~gld~L~e~i~ 41 (123)
|+||+|+...+.... .. .....+++||..+.|++++.+.|.
T Consensus 108 v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 108 VGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred EEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 579999875543221 11 234689999999999999998764
No 216
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=94.37 E-value=0.17 Score=32.52 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=35.5
Q ss_pred cccEEEeCCCCCHHHHHHHhH---HHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 61 QSPVVLHTDRRSIEDFCNKLH---RTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 61 ~~~~~l~~g~~tv~d~a~~IH---~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
.+.+-++.| +|+.++...+- ..+.+--....+ -..++.++.++.|+|||.|.|+.
T Consensus 20 ~~~~~~~~~-~tv~~L~~~l~~~~p~l~~~~~~~~v-----avN~~~v~~~~~l~dgDeVai~P 77 (82)
T PLN02799 20 DMTLELPAG-STTADCLAELVAKFPSLEEVRSCCVL-----ALNEEYTTESAALKDGDELAIIP 77 (82)
T ss_pred eEEEECCCC-CcHHHHHHHHHHHChhHHHHhhCcEE-----EECCEEcCCCcCcCCCCEEEEeC
Confidence 346667776 99999977663 233331111111 12556688999999999999974
No 217
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=94.36 E-value=0.062 Score=40.26 Aligned_cols=33 Identities=21% Similarity=0.102 Sum_probs=21.3
Q ss_pred CcccCCCCCHhh-HH----HH----h--cC----CCeEEEeecCCcCh
Q psy2927 1 MQKVSDQISIEE-LD----II----Y--KI----PHCVPLSAHHKWNF 33 (123)
Q Consensus 1 V~NKiD~~~~e~-l~----~l----~--~~----~~~v~ISA~~~~gl 33 (123)
|+||+|+...++ .+ ++ . .+ .+.+||||.+|.|.
T Consensus 124 viNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 124 FLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred EEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 479999874332 11 12 1 12 25899999999985
No 218
>CHL00189 infB translation initiation factor 2; Provisional
Probab=94.17 E-value=0.064 Score=48.20 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=31.9
Q ss_pred CcccCCCCCH--hhH-HHHhc----------CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI--EEL-DIIYK----------IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~--e~l-~~l~~----------~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +.+ ..+.. ...++++||.+|.|+++|++.+.....
T Consensus 353 ViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~e 410 (742)
T CHL00189 353 AINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLAE 410 (742)
T ss_pred EEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhhh
Confidence 5899998742 222 22211 124799999999999999999987654
No 219
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=94.10 E-value=0.061 Score=33.30 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=33.1
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
+++-++.+ +|+.|+...+.-+. +.+.-|+ +..+-++.-..++.|+|||.|+|++
T Consensus 6 ~~~~~~~~-~tv~~ll~~l~~~~-~~v~v~v----N~~iv~~~~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 6 EPVEVEDG-LTLAALLESLGLDP-RRVAVAV----NGEIVPRSEWDDTILKEGDRIEIVT 59 (64)
T ss_pred eEEEcCCC-CcHHHHHHHcCCCC-CeEEEEE----CCEEcCHHHcCceecCCCCEEEEEE
Confidence 46677886 89999987654321 2222221 2222223335678999999999986
No 220
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=94.09 E-value=0.042 Score=45.56 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=14.0
Q ss_pred CeEEEeecCCcChHHH
Q psy2927 21 HCVPLSAHHKWNFDDL 36 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L 36 (123)
+++++||.+|.|++++
T Consensus 181 ~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 181 PFIPVSAFEGDNVVKK 196 (425)
T ss_pred eEEEeecccCCCcccc
Confidence 4799999999999873
No 221
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.05 E-value=0.081 Score=40.89 Aligned_cols=24 Identities=8% Similarity=-0.038 Sum_probs=19.7
Q ss_pred CeEEEeecCCc-ChHHHHHHHHHhh
Q psy2927 21 HCVPLSAHHKW-NFDDLLEKMWEYL 44 (123)
Q Consensus 21 ~~v~ISA~~~~-gld~L~e~i~~~L 44 (123)
..+.+||++|. |++++.+.+...+
T Consensus 163 ~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 163 VYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred EEEEccCCcCCcCHHHHHHHHHHHH
Confidence 36789999998 8999988887754
No 222
>COG1162 Predicted GTPases [General function prediction only]
Probab=94.02 E-value=0.075 Score=43.06 Aligned_cols=48 Identities=17% Similarity=0.100 Sum_probs=33.5
Q ss_pred CcccCCCCCHhhHH--HH----hcCC-CeEEEeecCCcChHHHHHHHHHhhccceEEe
Q psy2927 1 MQKVSDQISIEELD--II----YKIP-HCVPLSAHHKWNFDDLLEKMWEYLKLTRIYT 51 (123)
Q Consensus 1 V~NKiD~~~~e~l~--~l----~~~~-~~v~ISA~~~~gld~L~e~i~~~L~~irvyt 51 (123)
++||+|+++.++.. .. .... .++.+||++++|+++|.+.+... +.++.
T Consensus 116 vlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~---~svl~ 170 (301)
T COG1162 116 VLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAELLAGK---ITVLL 170 (301)
T ss_pred EEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcCC---eEEEE
Confidence 58999999766543 11 1223 47889999999999988776554 45555
No 223
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=94.00 E-value=0.066 Score=39.17 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=12.3
Q ss_pred CeEEEeecCCcChHH
Q psy2927 21 HCVPLSAHHKWNFDD 35 (123)
Q Consensus 21 ~~v~ISA~~~~gld~ 35 (123)
..+++||++|+|+++
T Consensus 158 ~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 158 PVLYASAKNGWASLN 172 (194)
T ss_pred CEEEeehhccccccc
Confidence 478999999988744
No 224
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=93.93 E-value=0.036 Score=41.42 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.8
Q ss_pred CeEEEeecCCcChHHH
Q psy2927 21 HCVPLSAHHKWNFDDL 36 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L 36 (123)
.++++||.+|.|+++.
T Consensus 170 ~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 170 TFIPISALDGDNVVSR 185 (208)
T ss_pred eEEEEeCCCCCCCccC
Confidence 4899999999999853
No 225
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=93.92 E-value=0.042 Score=46.57 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=35.0
Q ss_pred CcccCCCCCHhhHHHH-----h--cC--CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEELDII-----Y--KI--PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l-----~--~~--~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.+++.++.. . .+ .+.+++||.+|.|+++|.+.|.++++
T Consensus 109 vltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 109 VLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred EEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 6899999977554322 1 22 24688999999999999999999985
No 226
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=93.92 E-value=0.088 Score=32.99 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=35.3
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhc--ceeEEecCCCCCCCcee---CCCceecCCCeEEEEe
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEF--KYALVWGSSVKHQPQKV---GKEHVLNDEDVVQIVK 121 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f--~~A~vwg~s~k~~~q~v---g~~~~l~d~Dvv~i~~ 121 (123)
..+.++.+ +|+.|+...+-.....-+ .+..|. ..++.+ +.++.|+|||.|.|+.
T Consensus 14 ~~~~~~~~-~tv~~ll~~l~~~~p~~~~~~~~~v~-----vN~~~v~~~~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 14 EEIEVPEG-STVRDLLEALAERYPELALRDRVAVA-----VNGEIVPDDGLDTPLKDGDEVAILP 72 (77)
T ss_dssp EEEEESST-SBHHHHHHHHCHHTGGGHTTTTEEEE-----ETTEEEGGGTTTSBEETTEEEEEEE
T ss_pred eEEecCCC-CcHHHHHHHHHhhccccccCccEEEE-----ECCEEcCCccCCcCcCCCCEEEEEC
Confidence 35667776 999999977655553110 333332 133444 4599999999999975
No 227
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=93.85 E-value=0.062 Score=46.94 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=29.5
Q ss_pred CcccCCCCC--HhhHH-HHhc-------C---CCeEEEeecCCcChHHHHHHHHH
Q psy2927 1 MQKVSDQIS--IEELD-IIYK-------I---PHCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 1 V~NKiD~~~--~e~l~-~l~~-------~---~~~v~ISA~~~~gld~L~e~i~~ 42 (123)
++||+|+.. .+.+. .+.. + ...+++||++|+|+++|++.+..
T Consensus 193 viNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 193 AINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 579999863 33332 2211 1 24799999999999999998864
No 228
>PLN03108 Rab family protein; Provisional
Probab=93.82 E-value=0.1 Score=38.91 Aligned_cols=44 Identities=16% Similarity=0.043 Sum_probs=29.4
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... ++.+++. .+ -..+.+||.++.|++++.+.+.+.+
T Consensus 117 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 117 IGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred EEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5799998642 3333342 21 2478899999999999776655543
No 229
>COG0218 Predicted GTPase [General function prediction only]
Probab=93.71 E-value=0.11 Score=39.79 Aligned_cols=46 Identities=26% Similarity=0.338 Sum_probs=34.2
Q ss_pred CcccCCCCCHhhH----HHHh-----cCC-C--eEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEEL----DIIY-----KIP-H--CVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~l----~~l~-----~~~-~--~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|.+...+. ..+. ..+ . .+..|+.++.|+++|...|.+.+..
T Consensus 141 v~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 141 VLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred EEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 5899999976443 2221 122 2 7889999999999999999998764
No 230
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=93.69 E-value=0.072 Score=39.23 Aligned_cols=22 Identities=18% Similarity=0.075 Sum_probs=18.6
Q ss_pred CeEEEeecCCcC-hHHHHHHHHH
Q psy2927 21 HCVPLSAHHKWN-FDDLLEKMWE 42 (123)
Q Consensus 21 ~~v~ISA~~~~g-ld~L~e~i~~ 42 (123)
..+.+||+++.| ++++.+.+.+
T Consensus 155 ~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 155 TYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred EEEECCcCCCCCCHHHHHHHHHH
Confidence 477899999998 9998877766
No 231
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.68 E-value=0.064 Score=37.61 Aligned_cols=32 Identities=16% Similarity=-0.005 Sum_probs=22.2
Q ss_pred CcccCCCCCHhhHHHH----h-cCCCeEEEeecCCcC
Q psy2927 1 MQKVSDQISIEELDII----Y-KIPHCVPLSAHHKWN 32 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l----~-~~~~~v~ISA~~~~g 32 (123)
|+||+|+++++.+..+ . .....+++||.++.+
T Consensus 48 vlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 48 LLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA 84 (141)
T ss_pred EEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc
Confidence 5899999876554332 1 223589999998876
No 232
>PRK14845 translation initiation factor IF-2; Provisional
Probab=93.67 E-value=0.068 Score=49.70 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=19.6
Q ss_pred CeEEEeecCCcChHHHHHHHHH
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~ 42 (123)
.++||||.+|+|+++|++.+..
T Consensus 649 ~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 649 AIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 233
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=93.56 E-value=0.3 Score=30.82 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=34.1
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHH-------hhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIA-------KEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~-------~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
.+-++.+ +|+.|+...+=.... +.+..|+ .++.+-.++.|+|||.|.|+.
T Consensus 19 ~~~~~~~-~tv~~ll~~l~~~~~~~~~~~~~~~~v~v--------Ng~~v~~~~~l~~gD~v~i~p 75 (80)
T cd00754 19 ELELPEG-ATVGELLDALEARYPGLLEELLARVRIAV--------NGEYVRLDTPLKDGDEVAIIP 75 (80)
T ss_pred EEECCCC-CcHHHHHHHHHHHCchHHHhhhhcEEEEE--------CCeEcCCCcccCCCCEEEEeC
Confidence 5566776 999999877654421 1222222 455666999999999999975
No 234
>PRK06437 hypothetical protein; Provisional
Probab=93.52 E-value=0.15 Score=32.13 Aligned_cols=51 Identities=20% Similarity=0.373 Sum_probs=36.3
Q ss_pred cccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 61 QSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 61 ~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
++.+-++.+ +|+.|+...+.-+ .. ..|.. ..++-+-.++.|+|||.|+|++
T Consensus 12 ~~~~~i~~~-~tv~dLL~~Lgi~--~~-~vaV~------vNg~iv~~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 12 NKTIEIDHE-LTVNDIIKDLGLD--EE-EYVVI------VNGSPVLEDHNVKKEDDVLILE 62 (67)
T ss_pred ceEEEcCCC-CcHHHHHHHcCCC--Cc-cEEEE------ECCEECCCceEcCCCCEEEEEe
Confidence 456777887 9999999776432 11 22331 3566677999999999999975
No 235
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=93.31 E-value=0.071 Score=44.27 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=13.4
Q ss_pred CeEEEeecCCcChHH
Q psy2927 21 HCVPLSAHHKWNFDD 35 (123)
Q Consensus 21 ~~v~ISA~~~~gld~ 35 (123)
..+++||.+|.|+++
T Consensus 183 ~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 183 PFIPISAWNGDNVIK 197 (426)
T ss_pred eEEEeeccccccccc
Confidence 479999999999986
No 236
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=93.23 E-value=0.16 Score=38.08 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=30.3
Q ss_pred CcccCCCCCH----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|.||+|+... +.+ .+. .. -..+.+||++|.|++++.+.+.+.+
T Consensus 105 vgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 105 CGNKVDVKDRKVKAKSI-TFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred EEECcccccccCCHHHH-HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5799997532 222 221 11 2478899999999999999888766
No 237
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=93.23 E-value=0.089 Score=46.05 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.6
Q ss_pred CeEEEeecCCcChHHHHHHHHH
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~ 42 (123)
.++|+||.+|+|+++|++.+..
T Consensus 192 ~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 192 AIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred eEEEeecCCCCChhHHHHHHHH
Confidence 5799999999999999998754
No 238
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=93.19 E-value=0.09 Score=38.38 Aligned_cols=22 Identities=14% Similarity=-0.002 Sum_probs=18.5
Q ss_pred CeEEEeecCCcC-hHHHHHHHHH
Q psy2927 21 HCVPLSAHHKWN-FDDLLEKMWE 42 (123)
Q Consensus 21 ~~v~ISA~~~~g-ld~L~e~i~~ 42 (123)
..+.+||++|+| ++++.+.+.+
T Consensus 151 ~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 151 IYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred EEEECccCcCCcCHHHHHHHHHH
Confidence 467899999995 9998887776
No 239
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.19 E-value=0.059 Score=42.94 Aligned_cols=46 Identities=20% Similarity=0.189 Sum_probs=30.2
Q ss_pred CcccCCCCCHhh----HHH-Hh--c------CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEE----LDI-IY--K------IPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~----l~~-l~--~------~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||.|....+. +.. +. . .|+++.+||.++.|+++|.++|.++...
T Consensus 173 vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 173 VVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp EEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 689999654432 211 11 1 2568889999999999999999987543
No 240
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=93.14 E-value=0.12 Score=38.97 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=30.5
Q ss_pred CcccCCCCCH----hhHHHH-hc-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI----EELDII-YK-IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~----e~l~~l-~~-~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|.||+|+... +++ .+ .. .-..+.+||++|.|++++.+.+.+.+
T Consensus 123 vgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 123 CGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred EEEchhhhhccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 5799997532 222 22 21 12478899999999999998888766
No 241
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=93.11 E-value=0.15 Score=45.28 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=33.1
Q ss_pred CcccCCCCCHh----hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIE----ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e----~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
++|++|..... +.++|. .. -+++++||.+|.|+|+|++++-+...
T Consensus 114 aLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 114 ALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred EeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence 47999976442 234442 22 25999999999999999999988754
No 242
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=92.94 E-value=0.066 Score=46.78 Aligned_cols=36 Identities=19% Similarity=0.102 Sum_probs=23.9
Q ss_pred CcccCCCCC--HhhHH----HH----h--cCC--CeEEEeecCCcChHHH
Q psy2927 1 MQKVSDQIS--IEELD----II----Y--KIP--HCVPLSAHHKWNFDDL 36 (123)
Q Consensus 1 V~NKiD~~~--~e~l~----~l----~--~~~--~~v~ISA~~~~gld~L 36 (123)
|+||+|+.. .+.++ .+ . .+. +.+||||.+|.|++++
T Consensus 163 vvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~ 212 (632)
T PRK05506 163 AVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTR 212 (632)
T ss_pred EEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCcccc
Confidence 589999974 32222 11 1 232 4899999999999853
No 243
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=92.93 E-value=0.086 Score=43.32 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=37.6
Q ss_pred CcccCCCCCHhhHHH--------H-h--cCC----CeEEEeecC-CcChHHHHHHHHHhhccceEEeCCCCCCCCCcccE
Q psy2927 1 MQKVSDQISIEELDI--------I-Y--KIP----HCVPLSAHH-KWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPV 64 (123)
Q Consensus 1 V~NKiD~~~~e~l~~--------l-~--~~~----~~v~ISA~~-~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~ 64 (123)
.+||+|+++.+++.. | . .|| +++.-||.. .+|-..-.+.|.++|.-.--|...|- ++.++||
T Consensus 134 flnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe--r~~dkPf 211 (394)
T COG0050 134 FLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE--RDIDKPF 211 (394)
T ss_pred EEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCC--Ccccccc
Confidence 379999997544322 1 1 344 345556655 34444444555555554444544444 4577899
Q ss_pred EEeCC
Q psy2927 65 VLHTD 69 (123)
Q Consensus 65 ~l~~g 69 (123)
++|-.
T Consensus 212 lmpvE 216 (394)
T COG0050 212 LMPVE 216 (394)
T ss_pred cccce
Confidence 98864
No 244
>PRK04004 translation initiation factor IF-2; Validated
Probab=92.92 E-value=0.11 Score=45.43 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=19.6
Q ss_pred CeEEEeecCCcChHHHHHHHHH
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~ 42 (123)
..+|+||.+|+|+++|++.+..
T Consensus 194 ~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 194 AIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred eEeeccCCCCCChHHHHHHHHH
Confidence 4799999999999999988864
No 245
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=92.69 E-value=0.12 Score=46.78 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=30.2
Q ss_pred CcccCCCCC--HhhH-HHHh-------cC---CCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQIS--IEEL-DIIY-------KI---PHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~--~e~l-~~l~-------~~---~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|+||+|+.. .+.+ ..+. .+ -.++++||.+|.|+++|++.|...
T Consensus 395 viNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 395 AINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred EEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 589999864 2222 2221 11 248999999999999999998754
No 246
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=92.65 E-value=0.074 Score=44.12 Aligned_cols=36 Identities=19% Similarity=0.052 Sum_probs=23.7
Q ss_pred CcccCCCCC--HhhH----HHH----h--cCC--CeEEEeecCCcChHHH
Q psy2927 1 MQKVSDQIS--IEEL----DII----Y--KIP--HCVPLSAHHKWNFDDL 36 (123)
Q Consensus 1 V~NKiD~~~--~e~l----~~l----~--~~~--~~v~ISA~~~~gld~L 36 (123)
|+||+|+.. .+.+ +.+ . .+. +++||||.+|+|++++
T Consensus 139 viNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 139 AVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred EEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 589999874 2211 111 1 122 4899999999999864
No 247
>KOG0466|consensus
Probab=92.18 E-value=0.17 Score=41.87 Aligned_cols=50 Identities=28% Similarity=0.354 Sum_probs=36.5
Q ss_pred cccCCCCCHhh-H---HHHh--------cCCCeEEEeecCCcChHHHHHHHHHhhcc-ceEEe
Q psy2927 2 QKVSDQISIEE-L---DIIY--------KIPHCVPLSAHHKWNFDDLLEKMWEYLKL-TRIYT 51 (123)
Q Consensus 2 ~NKiD~~~~e~-l---~~l~--------~~~~~v~ISA~~~~gld~L~e~i~~~L~~-irvyt 51 (123)
-||+|++.++. + +.+. +-.++|||||.-+.|+|.+.|.|.+.++. .|=|+
T Consensus 186 QNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~ 248 (466)
T KOG0466|consen 186 QNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFT 248 (466)
T ss_pred echhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccC
Confidence 59999996542 2 2221 22369999999999999999999998875 33344
No 248
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=92.03 E-value=0.17 Score=41.61 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=26.2
Q ss_pred CcccCCCCCHhhH-H----HH----h--cC----CCeEEEeecCCc--------ChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEEL-D----II----Y--KI----PHCVPLSAHHKW--------NFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~l-~----~l----~--~~----~~~v~ISA~~~~--------gld~L~e~i~~~L 44 (123)
|+||+|+++.+++ + ++ . .+ .+++++||.++. ++..|++++.+.+
T Consensus 134 vvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~ 200 (394)
T TIGR00485 134 FLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYI 200 (394)
T ss_pred EEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcC
Confidence 4799999864321 1 12 1 12 257999999875 3455666665543
No 249
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=92.01 E-value=0.23 Score=36.76 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=23.6
Q ss_pred CCCeEEEeec--CCcChHHHHHHHHHhhcc
Q psy2927 19 IPHCVPLSAH--HKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 19 ~~~~v~ISA~--~~~gld~L~e~i~~~L~~ 46 (123)
.|.++++|+. .+.|+..|.+.|...|+-
T Consensus 156 ~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 156 EPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 3578889998 679999999999998864
No 250
>PRK12735 elongation factor Tu; Reviewed
Probab=92.01 E-value=0.16 Score=41.88 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=30.7
Q ss_pred CcccCCCCCHhh--------HHHH-h--cC----CCeEEEeecCCc----------ChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEE--------LDII-Y--KI----PHCVPLSAHHKW----------NFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~--------l~~l-~--~~----~~~v~ISA~~~~----------gld~L~e~i~~~L~ 45 (123)
|+||+|+.+.++ +..+ . .+ -+.+++||.+|+ ++..|++++.+.++
T Consensus 134 vvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 134 FLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred EEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 479999985432 1111 1 12 247999999984 67899999988764
No 251
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=91.98 E-value=0.3 Score=30.21 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=33.7
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCC----ceecCCCeEEEEe
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKE----HVLNDEDVVQIVK 121 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~----~~l~d~Dvv~i~~ 121 (123)
+++.++.+ +|+.++...+--+ .-..|. ...++-+.++ +.|.|||.|+|++
T Consensus 7 ~~~~~~~~-~tv~~ll~~l~~~---~~~i~V------~vNg~~v~~~~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 7 EPREVEEG-ATLAELLEELGLD---PRGVAV------ALNGEIVPRSEWASTPLQDGDRIEIVT 60 (65)
T ss_pred eEEEcCCC-CCHHHHHHHcCCC---CCcEEE------EECCEEcCHHHcCceecCCCCEEEEEE
Confidence 46777886 8999998665311 112232 1355666666 9999999999976
No 252
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=91.94 E-value=0.19 Score=38.90 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=19.1
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
..+|+|+.+++|+++|...|-+.++
T Consensus 213 ~f~pls~~~~~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 213 RFIPLSSKDGEGMEELLAAIDKANQ 237 (238)
T ss_dssp --EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred eEEEEECCChHHHHHHHHHHHHHhc
Confidence 5789999999999999998887654
No 253
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.80 E-value=0.26 Score=40.28 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=39.9
Q ss_pred CCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhccee
Q psy2927 20 PHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYA 91 (123)
Q Consensus 20 ~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A 91 (123)
|+++-+||.+|+|+++|.++|.+.+.. .+..|..- --++- -.++++-..++.++.+.+...
T Consensus 229 ppv~~t~A~~g~Gi~~L~~ai~~h~~~----~~~sg~~~------~~rr~-q~~~~~~~~v~~~v~~~~~~~ 289 (323)
T COG1703 229 PPVVTTSALEGEGIDELWDAIEDHRKF----LTESGLFT------EKRRT-QYVEWIRTLVRDEVLDRLEAN 289 (323)
T ss_pred CceeEeeeccCCCHHHHHHHHHHHHHH----HHhccccc------cchHH-HHHHHHHHHHHHHHHHHHHcc
Confidence 568889999999999999999998764 34444210 01121 355666666666666665444
No 254
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=91.74 E-value=0.3 Score=41.33 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=23.6
Q ss_pred CcccCCCCC--HhhHHHH-------h---cCC----CeEEEeecCCcChHH
Q psy2927 1 MQKVSDQIS--IEELDII-------Y---KIP----HCVPLSAHHKWNFDD 35 (123)
Q Consensus 1 V~NKiD~~~--~e~l~~l-------~---~~~----~~v~ISA~~~~gld~ 35 (123)
++||+|.++ ++..+++ . .+. ..|||||..|.|+-+
T Consensus 151 avNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 151 AVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred EEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 479999993 4333332 1 122 489999999999954
No 255
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=91.60 E-value=0.11 Score=43.43 Aligned_cols=34 Identities=24% Similarity=0.143 Sum_probs=23.4
Q ss_pred CcccCCCCC--HhhHHHHh------------cCCCeEEEeecCCcChH
Q psy2927 1 MQKVSDQIS--IEELDIIY------------KIPHCVPLSAHHKWNFD 34 (123)
Q Consensus 1 V~NKiD~~~--~e~l~~l~------------~~~~~v~ISA~~~~gld 34 (123)
++|||||++ ++..+++. .....||+||..|.|+-
T Consensus 145 AVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 145 AVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred EEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 479999994 33334331 11258999999999983
No 256
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=91.10 E-value=0.36 Score=35.04 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=31.2
Q ss_pred CcccCCCCCHhhHHHH----h--cCCCeEEEeecCCcChHHHHHHHHH
Q psy2927 1 MQKVSDQISIEELDII----Y--KIPHCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l----~--~~~~~v~ISA~~~~gld~L~e~i~~ 42 (123)
|+.|+|+.++++++.. . ...+++.+||....|+++|...+-.
T Consensus 96 vVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 96 VVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred EEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 4689999976655432 2 2346888999999999999887654
No 257
>KOG0094|consensus
Probab=91.03 E-value=0.37 Score=37.31 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=37.4
Q ss_pred CcccCCCCCHhhHH-----HHh-cCC-CeEEEeecCCcChHHHHHHHHHhhccceE
Q psy2927 1 MQKVSDQISIEELD-----IIY-KIP-HCVPLSAHHKWNFDDLLEKMWEYLKLTRI 49 (123)
Q Consensus 1 V~NKiD~~~~e~l~-----~l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L~~irv 49 (123)
|.||.||.+..++. +.+ ++. ..+.+||+.|.|+.+|..+|-..|+...+
T Consensus 134 VGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 134 VGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred EcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 67999999875532 221 222 46779999999999999999999987655
No 258
>PRK00049 elongation factor Tu; Reviewed
Probab=90.97 E-value=0.36 Score=39.90 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=29.7
Q ss_pred CcccCCCCCHhh-HH----HH----h--cC----CCeEEEeecCCc----------ChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEE-LD----II----Y--KI----PHCVPLSAHHKW----------NFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~-l~----~l----~--~~----~~~v~ISA~~~~----------gld~L~e~i~~~L~ 45 (123)
++||+|+.+.++ .+ ++ . .+ .+.+++||.++. |+..|+++|.+.++
T Consensus 134 vvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 134 FLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred EEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 379999985322 11 22 1 12 247999999875 56788888888654
No 259
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.78 E-value=0.48 Score=32.43 Aligned_cols=53 Identities=26% Similarity=0.302 Sum_probs=35.0
Q ss_pred CcccEEEeCCCCCHHHHHHHhHHHHHhhc-----ceeEEecCCCCCCCceeCCCceecCCCeEEEE
Q psy2927 60 YQSPVVLHTDRRSIEDFCNKLHRTIAKEF-----KYALVWGSSVKHQPQKVGKEHVLNDEDVVQIV 120 (123)
Q Consensus 60 ~~~~~~l~~g~~tv~d~a~~IH~d~~~~f-----~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~ 120 (123)
+-..+.|..| +||.|+... +-|.+-| ..+.+ | .-+..+-++-.|+|||-|+|.
T Consensus 17 ~l~~v~v~eg-atV~dAi~~--Sgll~~~~~idl~~n~~-G----I~~k~~kl~~~l~dgDRVEIy 74 (99)
T COG2914 17 YLCRVQLQEG-ATVEDAILA--SGLLELFPDIDLHENKV-G----IYSKPVKLDDELHDGDRVEIY 74 (99)
T ss_pred eEEEEEeccC-cCHHHHHHh--cchhhccccCCccccce-e----EEccccCccccccCCCEEEEe
Confidence 4557888997 999999754 4444333 22221 1 123557778889999999995
No 260
>CHL00071 tufA elongation factor Tu
Probab=90.40 E-value=0.3 Score=40.53 Aligned_cols=44 Identities=23% Similarity=0.247 Sum_probs=28.0
Q ss_pred CcccCCCCCHhhH-H----HH----h--cC----CCeEEEeecCCcC------------------hHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEEL-D----II----Y--KI----PHCVPLSAHHKWN------------------FDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~l-~----~l----~--~~----~~~v~ISA~~~~g------------------ld~L~e~i~~~L 44 (123)
|+||+|+++.+++ + ++ . .+ ...+|+||.+|+| +..|++++.+.+
T Consensus 134 vvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~ 210 (409)
T CHL00071 134 FLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI 210 (409)
T ss_pred EEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC
Confidence 4899999864432 1 12 1 12 2479999999873 456777776654
No 261
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=90.35 E-value=0.71 Score=30.99 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=14.9
Q ss_pred CCCceecCCCeEEEEe
Q psy2927 106 GKEHVLNDEDVVQIVK 121 (123)
Q Consensus 106 g~~~~l~d~Dvv~i~~ 121 (123)
|.+++|+|||.|.|+.
T Consensus 74 g~~t~L~dgD~v~i~P 89 (94)
T cd01764 74 EEDYILEDGDHVVFIS 89 (94)
T ss_pred CcccCCCCcCEEEEEC
Confidence 8999999999999975
No 262
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=90.31 E-value=0.84 Score=29.16 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=34.7
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhc---ceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEF---KYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f---~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
..+.++.+++|+.++...+-....+-+ .+..| -..++.+..+..|+|||.|.|+.
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v-----~vn~~~v~~~~~l~dgDevai~P 75 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMV-----AVNEEYVTDDALLNEGDEVAFIP 75 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEE-----EECCEEcCCCcCcCCCCEEEEeC
Confidence 356677544899999877644332111 11111 12556677899999999999864
No 263
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=90.17 E-value=0.7 Score=32.70 Aligned_cols=44 Identities=9% Similarity=-0.037 Sum_probs=29.0
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecC---CcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHH---KWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~---~~gld~L~e~i~~~L 44 (123)
|+||+|+... ++...+. .. -..+.+||++ +.|++++...+.+.+
T Consensus 115 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 115 VGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred EEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 5799997633 2233332 21 2478899999 778888877776654
No 264
>KOG0410|consensus
Probab=89.50 E-value=0.24 Score=41.15 Aligned_cols=26 Identities=19% Similarity=0.041 Sum_probs=22.8
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
..++|||.+|.|+++|+.++-..+-.
T Consensus 317 ~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 317 LDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred CccccccccCccHHHHHHHHHHHhhh
Confidence 38999999999999999999887654
No 265
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=89.50 E-value=0.39 Score=42.05 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.9
Q ss_pred CeEEEeecCCc----------ChHHHHHHHHHhhc
Q psy2927 21 HCVPLSAHHKW----------NFDDLLEKMWEYLK 45 (123)
Q Consensus 21 ~~v~ISA~~~~----------gld~L~e~i~~~L~ 45 (123)
+++++||.+|+ |++.|++.|.+.++
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 47899999996 79999999998875
No 266
>PLN00043 elongation factor 1-alpha; Provisional
Probab=89.49 E-value=0.33 Score=41.01 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=12.8
Q ss_pred CeEEEeecCCcChHH
Q psy2927 21 HCVPLSAHHKWNFDD 35 (123)
Q Consensus 21 ~~v~ISA~~~~gld~ 35 (123)
..+|+||.+|+|+.+
T Consensus 189 ~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 189 PFVPISGFEGDNMIE 203 (447)
T ss_pred eEEEEeccccccccc
Confidence 479999999999854
No 267
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=89.37 E-value=0.44 Score=29.64 Aligned_cols=54 Identities=13% Similarity=0.324 Sum_probs=32.2
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
+++-++.+ .|+.++...+--+ .+.+.-|+ +..+-++.-=.++.|.|||.|+|++
T Consensus 8 ~~~~~~~~-~tl~~ll~~l~~~-~~~vaVav----N~~iv~r~~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 8 QPMQCAAG-QTVHELLEQLNQL-QPGAALAI----NQQIIPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_pred eEEEcCCC-CCHHHHHHHcCCC-CCcEEEEE----CCEEeChHHcCccccCCCCEEEEEE
Confidence 46777786 8999887543111 11222222 2233333334678899999999986
No 268
>PLN03127 Elongation factor Tu; Provisional
Probab=89.27 E-value=0.51 Score=39.90 Aligned_cols=45 Identities=24% Similarity=0.284 Sum_probs=28.0
Q ss_pred CcccCCCCCHhh----HH-HH----h--cCC----CeEEEeec---CCcC-------hHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEE----LD-II----Y--KIP----HCVPLSAH---HKWN-------FDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~----l~-~l----~--~~~----~~v~ISA~---~~~g-------ld~L~e~i~~~L~ 45 (123)
|+||+|+++.++ ++ .+ . .++ +.+|+||. +|.| +..|++++.+.++
T Consensus 183 viNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 183 FLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred EEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 479999985432 11 11 1 222 36677765 5555 6788898888764
No 269
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=88.91 E-value=0.58 Score=39.49 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=27.5
Q ss_pred CcccCCCCCHhhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +.+.+. .+ ...+.+||++ .|++++.+.+.+.+.
T Consensus 316 V~NK~Dl~~~-~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 316 VLNKIDLKIN-SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred EEECccCCCc-chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHH
Confidence 5899998644 233332 11 2468899998 477777766666554
No 270
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=88.64 E-value=1 Score=28.35 Aligned_cols=50 Identities=12% Similarity=0.211 Sum_probs=34.1
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
..+-++.+ +|+.|+...+- +.. ....| ...++-+-.++.|+|||.|+|+.
T Consensus 16 ~~~~~~~~-~tv~~ll~~l~--~~~--~~v~v-----~vNg~iv~~~~~l~~gD~Veii~ 65 (70)
T PRK08364 16 KEIEWRKG-MKVADILRAVG--FNT--ESAIA-----KVNGKVALEDDPVKDGDYVEVIP 65 (70)
T ss_pred eEEEcCCC-CcHHHHHHHcC--CCC--ccEEE-----EECCEECCCCcCcCCCCEEEEEc
Confidence 35667886 89999986652 221 22222 13556677899999999999975
No 271
>KOG0461|consensus
Probab=88.56 E-value=0.97 Score=38.14 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=30.8
Q ss_pred CcccCCCCCHh----hHHHHh----------cC---CCeEEEeecCC----cChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIE----ELDIIY----------KI---PHCVPLSAHHK----WNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e----~l~~l~----------~~---~~~v~ISA~~~----~gld~L~e~i~~~L 44 (123)
|+||+|.+.+. .+++.+ .+ .+++++||..| +++.+|++++.+..
T Consensus 128 vinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 128 VINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred EEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 68999988552 233221 12 25899999999 88888888887754
No 272
>KOG1423|consensus
Probab=88.48 E-value=0.96 Score=37.40 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=36.0
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHH-hHHHHHhhc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNK-LHRTIAKEF 88 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~-IH~d~~~~f 88 (123)
+++++||++|+|+++|.+.+....+- +|.+.| +.++.. .+.+.+|.- |-..+.+..
T Consensus 247 ~vF~vSaL~G~GikdlkqyLmsqa~~------gpW~y~----a~i~T~--~s~e~l~~e~VReklLd~~ 303 (379)
T KOG1423|consen 247 RVFMVSALYGEGIKDLKQYLMSQAPP------GPWKYP----ADIVTE--ESPEFLCSESVREKLLDHL 303 (379)
T ss_pred eEEEEecccccCHHHHHHHHHhcCCC------CCCCCC----cccccc--cCHHHHHHHHHHHHHHhhC
Confidence 47899999999999999998876531 111111 333333 688888644 344454444
No 273
>PRK10218 GTP-binding protein; Provisional
Probab=88.30 E-value=0.5 Score=41.57 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=21.1
Q ss_pred CeEEEeecCCc----------ChHHHHHHHHHhhc
Q psy2927 21 HCVPLSAHHKW----------NFDDLLEKMWEYLK 45 (123)
Q Consensus 21 ~~v~ISA~~~~----------gld~L~e~i~~~L~ 45 (123)
+++++||.+|+ |+..|+++|.+.++
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 37999999998 58888888888775
No 274
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=87.88 E-value=1 Score=33.28 Aligned_cols=45 Identities=16% Similarity=0.098 Sum_probs=30.3
Q ss_pred CcccCCCCCHh---hHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIE---ELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e---~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|.||+|+.... +...+ ... -..+.+||+++.|++++...|.+.+-
T Consensus 119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 119 VGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLT 168 (215)
T ss_pred EEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 46999975322 11122 121 24788999999999998888887663
No 275
>KOG0088|consensus
Probab=87.34 E-value=0.76 Score=34.76 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=39.1
Q ss_pred CcccCCCCCHhhH-----HHHhc--CCCeEEEeecCCcChHHHHHHHHHhhc---cceEEeCCCCC--CCCCcccEEE
Q psy2927 1 MQKVSDQISIEEL-----DIIYK--IPHCVPLSAHHKWNFDDLLEKMWEYLK---LTRIYTKPKGQ--LPDYQSPVVL 66 (123)
Q Consensus 1 V~NKiD~~~~e~l-----~~l~~--~~~~v~ISA~~~~gld~L~e~i~~~L~---~irvytk~~g~--~pd~~~~~~l 66 (123)
|.||+|+-.+..+ +..++ -...+-.||+...|+.+|.+.+-..+- ..|.-+++|+. +|+..+.+-+
T Consensus 124 VGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~ 201 (218)
T KOG0088|consen 124 VGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRL 201 (218)
T ss_pred ecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHhhhcccccCCcCCCCCCcccchhc
Confidence 5799997543222 11211 124678999999999987776655331 13556777765 4554444333
No 276
>COG1084 Predicted GTPase [General function prediction only]
Probab=87.26 E-value=0.69 Score=38.18 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=33.6
Q ss_pred CcccCCCCCHhhHHHHh------cCCCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQISIEELDIIY------KIPHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l~------~~~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|+||+|+.+.+.++++. ...+.+.+|+..+.++|.+.+.+...
T Consensus 286 V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 286 VINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred EEecccccchhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 68999999887766552 22346789999999999999888775
No 277
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=86.94 E-value=0.78 Score=33.23 Aligned_cols=43 Identities=26% Similarity=0.211 Sum_probs=29.3
Q ss_pred CcccCCCCC---HhhHHHH---hcC----C-CeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQIS---IEELDII---YKI----P-HCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~---~e~l~~l---~~~----~-~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
++||.|+.. .+++... ... + .++.+||.+|.|+++-++-+.+.
T Consensus 121 l~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 121 LANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp EEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred EeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 379999764 3444322 121 1 36779999999999988877664
No 278
>PRK07440 hypothetical protein; Provisional
Probab=86.89 E-value=1.8 Score=27.41 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=31.7
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeC----CCceecCCCeEEEEe
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVG----KEHVLNDEDVVQIVK 121 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg----~~~~l~d~Dvv~i~~ 121 (123)
++.-++.+ .|+.|+....- +..+. .|. ...++-+- .++.|+|||.|+|++
T Consensus 12 ~~~~~~~~-~tl~~lL~~l~--~~~~~-vav------~~N~~iv~r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 12 ETRTCSSG-TSLPDLLQQLG--FNPRL-VAV------EYNGEILHRQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred EEEEcCCC-CCHHHHHHHcC--CCCCe-EEE------EECCEEeCHHHcCceecCCCCEEEEEE
Confidence 36677786 89988874321 11111 222 23444455 789999999999986
No 279
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=86.74 E-value=2.2 Score=27.37 Aligned_cols=55 Identities=24% Similarity=0.242 Sum_probs=29.8
Q ss_pred EEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCC-CCCCceeCCCceecCCCeEEEE
Q psy2927 65 VLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSV-KHQPQKVGKEHVLNDEDVVQIV 120 (123)
Q Consensus 65 ~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~-k~~~q~vg~~~~l~d~Dvv~i~ 120 (123)
.++.+++|+.++-..+-.... .+.-+.-.|... -..++-++.+..|+|||.|-|+
T Consensus 20 ~v~~~~~tv~~l~~~L~~~~~-~~~~~~~~~~~~~aVN~~~~~~~~~l~dgDeVai~ 75 (81)
T PRK11130 20 ELAADFPTVEALRQHLAQKGD-RWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFF 75 (81)
T ss_pred EecCCCCCHHHHHHHHHHhCc-cHHhhhcCCCEEEEECCEEcCCCCCCCCCCEEEEe
Confidence 344323899999766643321 111011011100 1133446899999999999885
No 280
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=86.64 E-value=0.5 Score=32.21 Aligned_cols=59 Identities=25% Similarity=0.317 Sum_probs=30.1
Q ss_pred cEEEeCC--CCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCce-----------eCCCceecCCCeEEEEec
Q psy2927 63 PVVLHTD--RRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQK-----------VGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~g--~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~-----------vg~~~~l~d~Dvv~i~~~ 122 (123)
.+.+|.+ ..|+.++...|...+.+.=.--.+-|.+.| +|== =+.+|+|+|||.|.|+|.
T Consensus 21 ~v~l~~~~~~~ti~~Li~~l~~nll~~r~elF~~~~~vr-PGILvLINd~DwEl~g~~~y~l~~~D~I~FiST 92 (96)
T PF09138_consen 21 KVSLPSDGEPATIKDLIDYLRDNLLKERPELFLEGGSVR-PGILVLINDADWELLGEEDYVLKDGDNITFIST 92 (96)
T ss_dssp EEEE-SSCSC-BHHHHHHHHCCCT-SSGHHHHBSSSSB--TTEEEEETTCEHHHHTCCCSB--TTEEEEEEET
T ss_pred EEEcCCCCCCcCHHHHHHHHHHhccCCCHhHEecCCeEc-CcEEEEEcCccceeecCcceEcCCCCEEEEEcc
Confidence 4455511 368888877776655442100011133444 4411 177999999999999984
No 281
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=86.55 E-value=0.59 Score=39.44 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=13.0
Q ss_pred CeEEEeecCCcChHH
Q psy2927 21 HCVPLSAHHKWNFDD 35 (123)
Q Consensus 21 ~~v~ISA~~~~gld~ 35 (123)
.+||+||.+|+|+.+
T Consensus 189 ~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 189 PFIPISGWQGDNMIE 203 (446)
T ss_pred eEEEeecccCCCccc
Confidence 479999999999964
No 282
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=85.90 E-value=0.58 Score=33.25 Aligned_cols=41 Identities=15% Similarity=0.039 Sum_probs=24.7
Q ss_pred CcccCCCCCHhhHH---------HHh-cCC-CeEEEeecC------CcChHHHHHHHH
Q psy2927 1 MQKVSDQISIEELD---------IIY-KIP-HCVPLSAHH------KWNFDDLLEKMW 41 (123)
Q Consensus 1 V~NKiD~~~~e~l~---------~l~-~~~-~~v~ISA~~------~~gld~L~e~i~ 41 (123)
|.||+|+....... .+. +.. ..+.+||.+ ++|+.++.+.+.
T Consensus 105 v~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 105 LANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred EEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 57999986432222 121 111 256688888 888888776553
No 283
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=85.89 E-value=1 Score=31.14 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=30.7
Q ss_pred CcccCCCCCH-----hhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|.||.|+... ++...+ ..+ -..+.+||+++.|+.++...+.+.+
T Consensus 110 vg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 110 VGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp EEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred eeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699997653 233334 222 3578899999999999888877654
No 284
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=85.79 E-value=1.1 Score=34.26 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=18.2
Q ss_pred CeEEEeecCCcC-hHHHHHHHHHh
Q psy2927 21 HCVPLSAHHKWN-FDDLLEKMWEY 43 (123)
Q Consensus 21 ~~v~ISA~~~~g-ld~L~e~i~~~ 43 (123)
..+.+||+++.| ++++.+.....
T Consensus 151 ~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 151 SYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred EEEEcCCCcCCcCHHHHHHHHHHH
Confidence 477899999885 99988776664
No 285
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=85.77 E-value=2.1 Score=27.20 Aligned_cols=50 Identities=16% Similarity=0.289 Sum_probs=33.7
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeC----CCceecCCCeEEEEe
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVG----KEHVLNDEDVVQIVK 121 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg----~~~~l~d~Dvv~i~~ 121 (123)
++.-++.+ .|+.|+-..+- |-. =.+|. ...|+-|. .+|+|++||.|+|++
T Consensus 10 ~~~e~~~~-~tv~dLL~~l~--~~~-~~vav------~vNg~iVpr~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 10 KEVEIAEG-TTVADLLAQLG--LNP-EGVAV------AVNGEIVPRSQWADTILKEGDRIEVVR 63 (68)
T ss_pred EEEEcCCC-CcHHHHHHHhC--CCC-ceEEE------EECCEEccchhhhhccccCCCEEEEEE
Confidence 46777786 89988864421 110 12232 23667777 899999999999986
No 286
>PLN03126 Elongation factor Tu; Provisional
Probab=85.62 E-value=1.1 Score=38.35 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=27.1
Q ss_pred CcccCCCCCHhhH-H----HH----hc--CC----CeEEEeecCCcC------------------hHHHHHHHHHh
Q psy2927 1 MQKVSDQISIEEL-D----II----YK--IP----HCVPLSAHHKWN------------------FDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~~e~l-~----~l----~~--~~----~~v~ISA~~~~g------------------ld~L~e~i~~~ 43 (123)
++||+|+.+.+++ + ++ .. ++ ..+|+||.++.+ +..|++.+.+.
T Consensus 203 vvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~ 278 (478)
T PLN03126 203 FLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSY 278 (478)
T ss_pred EEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHh
Confidence 4899999864331 1 11 11 22 478999998753 45677777764
No 287
>KOG1191|consensus
Probab=85.26 E-value=0.53 Score=40.73 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=35.5
Q ss_pred CcccCCCCCH-hhHHH-----Hh-----cCCCeEEEeecCCcChHHHHHHHHHhhccceE
Q psy2927 1 MQKVSDQISI-EELDI-----IY-----KIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRI 49 (123)
Q Consensus 1 V~NKiD~~~~-e~l~~-----l~-----~~~~~v~ISA~~~~gld~L~e~i~~~L~~irv 49 (123)
|.||+|+.++ .++.. .. .++-.+.+||.+++|+++|.+++.+.+...++
T Consensus 395 ~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 395 VANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred EechhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 5799998865 22221 11 23334559999999999999999999887655
No 288
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=85.14 E-value=1.4 Score=27.12 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=28.9
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCC----CceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGK----EHVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~----~~~l~d~Dvv~i~~ 121 (123)
++-+ .. +|+.++-..+- +..+. .|. -..++-+.+ ++.|+|||.|+|++
T Consensus 9 ~~~~-~~-~tl~~Ll~~l~--~~~~~-vav------avN~~iv~~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 9 TLQT-EA-TTLALLLAELD--YEGNW-LAT------AVNGELVHKEARAQFVLHEGDRIEILS 60 (65)
T ss_pred EEEc-Cc-CcHHHHHHHcC--CCCCe-EEE------EECCEEcCHHHcCccccCCCCEEEEEE
Confidence 4455 33 68888875541 22111 111 224455565 88999999999986
No 289
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=85.01 E-value=2.1 Score=37.34 Aligned_cols=51 Identities=12% Similarity=0.175 Sum_probs=43.7
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
...+|.| +|+.|+|..++.+.......|.| .|+-+.+++.+..++.|++++
T Consensus 11 ~~~~~~g-tt~~dia~~~~~~~~~~~v~a~v-------ng~l~dL~~~l~~d~~Vefi~ 61 (638)
T PRK00413 11 VREFEAG-VTVADVAASISPGLAKAAVAGKV-------NGELVDLSTPIEEDASLEIIT 61 (638)
T ss_pred EEEeCCC-CCHHHHHHHhhhhchhheEEEEE-------CCEEeeCCccccCCCceeeee
Confidence 4567887 99999999999998888888876 456789999999999999976
No 290
>KOG0083|consensus
Probab=84.34 E-value=1.4 Score=32.47 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=31.9
Q ss_pred CcccCCCCCH-----hhHHHHh-cCC-CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KIP-HCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
+.||+|+..+ ++-++|+ .+. +.+..||++|.|.|.-.-.|.+.|..
T Consensus 109 lgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 109 LGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred hccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence 4699998653 2334452 222 46779999999999877777777654
No 291
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=84.22 E-value=2.2 Score=26.69 Aligned_cols=50 Identities=16% Similarity=0.335 Sum_probs=30.4
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCC----ceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKE----HVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~----~~l~d~Dvv~i~~ 121 (123)
+..++.+.+|+.|+...+ .+ ......| ...++-+-++ +.|+|||.|+|++
T Consensus 9 ~~~~~~~~~tv~~lL~~l--~~--~~~~vav-----~vN~~iv~r~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 9 QIEVPESVKTVAELLTHL--EL--DNKIVVV-----ERNKDILQKDDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred EEEcCCCcccHHHHHHHc--CC--CCCeEEE-----EECCEEeCHHHcCceecCCCCEEEEEE
Confidence 556666325888887532 22 2222222 2344555555 9999999999986
No 292
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=83.12 E-value=1.3 Score=31.49 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=25.3
Q ss_pred CcccCCCCCHh---hH-HHH--hcC------C-CeEEEeecCC------cChHHHHHHHH
Q psy2927 1 MQKVSDQISIE---EL-DII--YKI------P-HCVPLSAHHK------WNFDDLLEKMW 41 (123)
Q Consensus 1 V~NKiD~~~~e---~l-~~l--~~~------~-~~v~ISA~~~------~gld~L~e~i~ 41 (123)
|+||+|+.... ++ +.+ ... + ..+++||.+| .|+++-++-+.
T Consensus 106 v~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 106 LANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred EEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 58999986432 22 211 111 1 3566999998 78888776554
No 293
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=83.09 E-value=1.9 Score=28.17 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=17.4
Q ss_pred CceeCCCceecCCCeEEEEe
Q psy2927 102 PQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 102 ~q~vg~~~~l~d~Dvv~i~~ 121 (123)
...+|.++.|.|||.|-|+-
T Consensus 60 ~~~~~~~t~L~dGDeVa~~P 79 (84)
T COG1977 60 EFLVGLDTPLKDGDEVAFFP 79 (84)
T ss_pred eeeccccccCCCCCEEEEeC
Confidence 46799999999999999863
No 294
>COG1161 Predicted GTPases [General function prediction only]
Probab=83.04 E-value=1.2 Score=36.06 Aligned_cols=42 Identities=10% Similarity=-0.057 Sum_probs=29.7
Q ss_pred CcccCCCCCHhhHHHH----h-cC-CCeEEEeecCCcChHHHHHHHHH
Q psy2927 1 MQKVSDQISIEELDII----Y-KI-PHCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l----~-~~-~~~v~ISA~~~~gld~L~e~i~~ 42 (123)
|+||+|+++...++.. . .. ...+++|+.++.+...+..++..
T Consensus 67 vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~ 114 (322)
T COG1161 67 VLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEK 114 (322)
T ss_pred EEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccCccchHHHHHH
Confidence 6899999987765433 1 21 24688999999998888854443
No 295
>KOG0460|consensus
Probab=82.91 E-value=1.5 Score=36.92 Aligned_cols=65 Identities=18% Similarity=0.139 Sum_probs=30.8
Q ss_pred cccCCCC-CHhhHH-------HH-h--cCC----CeEEEee---cCCcChHHHHHHHHHhhccceEEeCCCCCCCCCccc
Q psy2927 2 QKVSDQI-SIEELD-------II-Y--KIP----HCVPLSA---HHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSP 63 (123)
Q Consensus 2 ~NKiD~~-~~e~l~-------~l-~--~~~----~~v~ISA---~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~ 63 (123)
+||+|++ ++|.++ ++ . .|+ ++|.=|| +.|.+-+-=.++|.++|...--|.--|-+ +.+.|
T Consensus 177 iNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R--~~~~p 254 (449)
T KOG0460|consen 177 INKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER--DLDKP 254 (449)
T ss_pred EecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc--ccCCC
Confidence 6999999 444321 11 2 233 3566454 44532222223344444433333322222 35668
Q ss_pred EEEeC
Q psy2927 64 VVLHT 68 (123)
Q Consensus 64 ~~l~~ 68 (123)
|++|-
T Consensus 255 Fl~pi 259 (449)
T KOG0460|consen 255 FLLPI 259 (449)
T ss_pred ceeeh
Confidence 88775
No 296
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=82.37 E-value=1.3 Score=29.17 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=34.0
Q ss_pred cEEEeCCCCCHHHHHHHh---HHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKL---HRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~I---H~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
.+-+..+ +|++|+.+.+ |++.. .+ --+|+.++.+|.++|||.|.+.-
T Consensus 26 ~~~~~~~-~tvkd~IEsLGVP~tEV~-----~i------~vNG~~v~~~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 26 THPFDGG-ATVKDVIESLGVPHTEVG-----LI------LVNGRPVDFDYRLKDGDRVAVYP 75 (81)
T ss_pred EEecCCC-CcHHHHHHHcCCChHHeE-----EE------EECCEECCCcccCCCCCEEEEEe
Confidence 3444554 9999998765 55543 22 12778899999999999999863
No 297
>KOG0078|consensus
Probab=82.11 E-value=2 Score=33.16 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=26.6
Q ss_pred CcccCCCCCH-----hhHHHHh-cCC-CeEEEeecCCcChHHHHHHH
Q psy2927 1 MQKVSDQISI-----EELDIIY-KIP-HCVPLSAHHKWNFDDLLEKM 40 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~~-~~v~ISA~~~~gld~L~e~i 40 (123)
|.||+|+... +.-+.++ ++. ..+.+||+++.|+++..-.+
T Consensus 123 vGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~L 169 (207)
T KOG0078|consen 123 VGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSL 169 (207)
T ss_pred eeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHH
Confidence 5799998753 3334553 332 36779999999998844333
No 298
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=80.63 E-value=1.4 Score=32.72 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=16.5
Q ss_pred eEEEeecCCcChH--------HHHHHHHHhh
Q psy2927 22 CVPLSAHHKWNFD--------DLLEKMWEYL 44 (123)
Q Consensus 22 ~v~ISA~~~~gld--------~L~e~i~~~L 44 (123)
+++.||..+|+++ +|++.|.+..
T Consensus 180 v~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~ 210 (213)
T cd04167 180 VCFASSKFGFCFTLESFAKKYGLVDSIVSNI 210 (213)
T ss_pred EEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence 6678999999886 5666555543
No 299
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=79.58 E-value=2.4 Score=28.01 Aligned_cols=54 Identities=11% Similarity=0.190 Sum_probs=32.6
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
++.-++.+ .|+.++.... .+........+ +..+-++.-=.++.|+|||.|+|++
T Consensus 26 ~~~~~~~~-~tl~~LL~~l--~~~~~~vAVev---Ng~iVpr~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 26 QSIQVDIS-SSLAQIIAQL--SLPELGCVFAI---NNQVVPRSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred eEEEcCCC-CcHHHHHHHc--CCCCceEEEEE---CCEEeCHHHcCcccCCCCCEEEEEE
Confidence 36667776 8988887543 22222111122 2333444445578899999999986
No 300
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=79.16 E-value=2.3 Score=31.67 Aligned_cols=22 Identities=27% Similarity=0.720 Sum_probs=19.3
Q ss_pred HHHHHHhHHHHHhhc-ceeEEec
Q psy2927 74 EDFCNKLHRTIAKEF-KYALVWG 95 (123)
Q Consensus 74 ~d~a~~IH~d~~~~f-~~A~vwg 95 (123)
-||=..+|.||.++| .|..+||
T Consensus 49 ~DLq~lVheDm~~nf~~Yp~~wg 71 (164)
T PF06940_consen 49 YDLQKLVHEDMKANFSAYPRIWG 71 (164)
T ss_pred CCHHHHHHHHHHHCHHhCCcccC
Confidence 367788999999999 5999999
No 301
>KOG0458|consensus
Probab=78.57 E-value=1.5 Score=38.62 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=24.1
Q ss_pred CcccCCCC--CHhhHHHHh-----------cC--C--CeEEEeecCCcChH
Q psy2927 1 MQKVSDQI--SIEELDIIY-----------KI--P--HCVPLSAHHKWNFD 34 (123)
Q Consensus 1 V~NKiD~~--~~e~l~~l~-----------~~--~--~~v~ISA~~~~gld 34 (123)
++||+|++ +++.++.+. .| + ..||||+.+|+||-
T Consensus 321 aiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~ 371 (603)
T KOG0458|consen 321 AINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLI 371 (603)
T ss_pred EeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccc
Confidence 47999999 455444331 12 2 57999999999994
No 302
>KOG0081|consensus
Probab=78.40 E-value=3.4 Score=31.30 Aligned_cols=41 Identities=15% Similarity=0.043 Sum_probs=26.6
Q ss_pred cccCCCCCHhh-----HHHHh-cCC-CeEEEeecCCcChHHHHHHHHH
Q psy2927 2 QKVSDQISIEE-----LDIIY-KIP-HCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 2 ~NKiD~~~~e~-----l~~l~-~~~-~~v~ISA~~~~gld~L~e~i~~ 42 (123)
.||+|+.+... ...|. ++. +.+..||-+|.|+++-.|.+.+
T Consensus 131 GNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~Lld 178 (219)
T KOG0081|consen 131 GNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLD 178 (219)
T ss_pred cCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHH
Confidence 49999876533 33342 322 4788999999999774444433
No 303
>KOG0084|consensus
Probab=78.19 E-value=3.1 Score=32.07 Aligned_cols=46 Identities=24% Similarity=0.206 Sum_probs=32.2
Q ss_pred CcccCCCCCH-----hhHHHHh-c--CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI-----EELDIIY-K--IPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~--~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|.||+|+.+. ++...++ + .|....+||+...|+++....|-..|..
T Consensus 120 VGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 120 VGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQ 173 (205)
T ss_pred EeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHH
Confidence 5799998754 3333332 2 2236789999999999988888776653
No 304
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=77.85 E-value=2.8 Score=30.72 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=11.2
Q ss_pred CcccCCCCCHhhHH
Q psy2927 1 MQKVSDQISIEELD 14 (123)
Q Consensus 1 V~NKiD~~~~e~l~ 14 (123)
|+||+|+++++.+.
T Consensus 36 VlNK~DL~~~~~l~ 49 (172)
T cd04178 36 VLNKIDLVPKENVE 49 (172)
T ss_pred EEehhhcCCHHHHH
Confidence 68999999877654
No 305
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.58 E-value=1.8 Score=29.37 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=14.0
Q ss_pred CCceecCCCeEEEEec
Q psy2927 107 KEHVLNDEDVVQIVKK 122 (123)
Q Consensus 107 ~~~~l~d~Dvv~i~~~ 122 (123)
++|.|+|||+|.|++.
T Consensus 77 e~y~ledgDiIvfist 92 (96)
T COG5131 77 ERYPLEDGDIIVFIST 92 (96)
T ss_pred ccccCCCCCEEEEEec
Confidence 5799999999999874
No 306
>KOG2776|consensus
Probab=77.33 E-value=3 Score=34.94 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=35.7
Q ss_pred CCHHHHHH----HhHHHHHhhcceeEEecC-------------CCCCCCceeCCCceecCCCeEEEE
Q psy2927 71 RSIEDFCN----KLHRTIAKEFKYALVWGS-------------SVKHQPQKVGKEHVLNDEDVVQIV 120 (123)
Q Consensus 71 ~tv~d~a~----~IH~d~~~~f~~A~vwg~-------------s~k~~~q~vg~~~~l~d~Dvv~i~ 120 (123)
.++.|+|. .||....+-||.-...-+ .+-|+|..--.+|.|++||+|+|-
T Consensus 46 asv~eiC~~GD~~i~E~t~kiYK~eK~~~KGIAfPT~Isvnncv~h~sPlksd~~~~Lk~GDvVKId 112 (398)
T KOG2776|consen 46 ASVREICEKGDSLILEETGKIYKKEKDFEKGIAFPTSISVNNCVCHFSPLKSDADYTLKEGDVVKID 112 (398)
T ss_pred chHHHHHHhhhHHHHHHHHHHHhhhhhhhccccccceecccceeeccCcCCCCCcccccCCCEEEEE
Confidence 89999995 588888777766222210 255666666669999999999994
No 307
>COG2229 Predicted GTPase [General function prediction only]
Probab=77.13 E-value=4.1 Score=30.99 Aligned_cols=43 Identities=12% Similarity=0.025 Sum_probs=31.7
Q ss_pred CcccCCCC---CHhhHHHH-h-c--CCCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQI---SIEELDII-Y-K--IPHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~---~~e~l~~l-~-~--~~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
+.||.|+. +++.+..+ . . ..++|.++|..+++..+.++.+...
T Consensus 127 a~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 127 AINKQDLFDALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred EeeccccCCCCCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 37999987 34555444 2 2 3468999999999999888877665
No 308
>KOG0091|consensus
Probab=76.60 E-value=4.5 Score=30.81 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=31.9
Q ss_pred CcccCCCCCH-----hhHHHHhc-CC-CeEEEeecCCcChHH----HHHHHHHhhcc
Q psy2927 1 MQKVSDQISI-----EELDIIYK-IP-HCVPLSAHHKWNFDD----LLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~~-~~-~~v~ISA~~~~gld~----L~e~i~~~L~~ 46 (123)
|..|+|+.+. ++.+.++. .. ..|-.||++|.|.++ |-+.|+..+..
T Consensus 122 VGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 122 VGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred eccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhc
Confidence 4579998765 44555532 22 578899999999987 66677776654
No 309
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=74.56 E-value=11 Score=24.21 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=29.3
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcc-----------eeEEecCCCCCCCceeCCC--ceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFK-----------YALVWGSSVKHQPQKVGKE--HVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~-----------~A~vwg~s~k~~~q~vg~~--~~l~d~Dvv~i~~ 121 (123)
.+-++ + +|+.|+...+-.....-+. +..| -..++.+..+ ..|+|||.|.|+.
T Consensus 19 ~v~~~-~-~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v-----~vN~~~v~~~~~~~l~dgdev~i~P 83 (88)
T TIGR01687 19 EIEIE-G-KTVGDLLNELMARYPKEFSELFKEGLGLVPNVII-----LVNGRNVDWGLGTELKDGDVVAIFP 83 (88)
T ss_pred EEEeC-C-CCHHHHHHHHHHHCcHHHHHhCccCCcccccEEE-----EECCEecCccCCCCCCCCCEEEEeC
Confidence 34445 5 8999998777544321111 1111 1133334333 5899999999864
No 310
>KOG4146|consensus
Probab=73.41 E-value=2.6 Score=28.76 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=29.7
Q ss_pred CCHHHHHHHhHHHHHhhcceeEEecCCCCCCC-----------ceeCCCceecCCCeEEEEec
Q psy2927 71 RSIEDFCNKLHRTIAKEFKYALVWGSSVKHQP-----------QKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 71 ~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~-----------q~vg~~~~l~d~Dvv~i~~~ 122 (123)
+|++|+..-|-+.+.++=-.-.+-+-|.+ +| ----++|.|+|||.|-++|.
T Consensus 36 ~tvgdll~yi~~~~ie~r~~lFi~~gsvr-pGii~lINd~DWEllekedy~ledgD~ivfiST 97 (101)
T KOG4146|consen 36 ATVGDLLDYIFGKYIETRDSLFIHHGSVR-PGIIVLINDMDWELLEKEDYPLEDGDHIVFIST 97 (101)
T ss_pred ccHHHHHHHHHHHHhcCCcceEeeCCcCc-CcEEEEEeccchhhhcccccCcccCCEEEEEEe
Confidence 57777776666655543222122222333 22 11247899999999999874
No 311
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=73.24 E-value=7.3 Score=24.02 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=29.5
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCC-ceeCCCceecCCCeEEEEec
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQP-QKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~-q~vg~~~~l~d~Dvv~i~~~ 122 (123)
++..++.+ .|+.|+.....-+. +...-|. +..+-+ ..-. +.|+|||.|+|++-
T Consensus 8 ~~~~~~~~-~tl~~ll~~l~~~~-~~vav~~----N~~iv~r~~~~--~~L~~gD~ieIv~~ 61 (65)
T PRK05863 8 EQVEVDEQ-TTVAALLDSLGFPE-KGIAVAV----DWSVLPRSDWA--TKLRDGARLEVVTA 61 (65)
T ss_pred EEEEcCCC-CcHHHHHHHcCCCC-CcEEEEE----CCcCcChhHhh--hhcCCCCEEEEEee
Confidence 36667776 89999886542211 1222222 111111 2233 35999999999863
No 312
>KOG0395|consensus
Probab=72.58 E-value=7.1 Score=29.29 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=32.9
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|.||+|+... ++-..++ .+ ...+-+||+...+++++...+......
T Consensus 114 VGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 114 VGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred EEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 5799998742 3333442 21 237889999999999998888887654
No 313
>KOG0098|consensus
Probab=72.10 E-value=3.1 Score=32.08 Aligned_cols=40 Identities=18% Similarity=0.033 Sum_probs=25.3
Q ss_pred cccCCCCCH-----hhHHHHhcCCC--eEEEeecCCcChHHHHHHHH
Q psy2927 2 QKVSDQISI-----EELDIIYKIPH--CVPLSAHHKWNFDDLLEKMW 41 (123)
Q Consensus 2 ~NKiD~~~~-----e~l~~l~~~~~--~v~ISA~~~~gld~L~e~i~ 41 (123)
.||+|+... ||-+..++.-. ..-+||++++|+++....+.
T Consensus 118 GNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta 164 (216)
T KOG0098|consen 118 GNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTA 164 (216)
T ss_pred cchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHH
Confidence 699998744 33344432111 34599999999998554443
No 314
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=72.01 E-value=3.8 Score=31.62 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=23.0
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
++++.||.++.|+++|++.+.++++
T Consensus 242 pv~~gSa~~~~G~~~ll~~~~~~~p 266 (268)
T cd04170 242 PVLCGSALTNIGVRELLDALVHLLP 266 (268)
T ss_pred EEEEeeCCCCcCHHHHHHHHHHhCC
Confidence 5788999999999999999999875
No 315
>KOG0072|consensus
Probab=70.45 E-value=4.2 Score=30.36 Aligned_cols=45 Identities=22% Similarity=0.144 Sum_probs=29.6
Q ss_pred CcccCCCCCH----hhHH-----HHh-cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI----EELD-----IIY-KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~----e~l~-----~l~-~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
++||.|.... |.+. .|. +.-.++-.||.+|+|||+..+-+.+-|.
T Consensus 125 ~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 125 FANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred EeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHh
Confidence 4799997633 2222 221 1113667999999999998887777654
No 316
>KOG0076|consensus
Probab=69.41 E-value=4.9 Score=30.64 Aligned_cols=45 Identities=20% Similarity=0.150 Sum_probs=30.9
Q ss_pred cccCCCCCHh---hHHHHh--------cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 2 QKVSDQISIE---ELDIIY--------KIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 2 ~NKiD~~~~e---~l~~l~--------~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
+||-|+-... +++... +...+.||||.+|+|+++=.+-+...+..
T Consensus 133 ankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 133 ANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEK 188 (197)
T ss_pred cchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhh
Confidence 6899976443 333321 11247899999999999987777777654
No 317
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=66.57 E-value=9.4 Score=33.43 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=29.8
Q ss_pred CcccCCCCCH--hh-HHH-------H-h-----cCCCeEEEeecCC----------cChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI--EE-LDI-------I-Y-----KIPHCVPLSAHHK----------WNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~--e~-l~~-------l-~-----~~~~~v~ISA~~~----------~gld~L~e~i~~~L~ 45 (123)
|+||||..+. ++ +++ | + .| +++..||..| .+|..|.+.|.+..+
T Consensus 126 VvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 126 VINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC-cEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 6899998843 32 222 1 1 12 4888999987 356778899888875
No 318
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=64.69 E-value=5 Score=24.19 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=15.2
Q ss_pred CCceeCC--CceecCCCeEEE
Q psy2927 101 QPQKVGK--EHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~--~~~l~d~Dvv~i 119 (123)
.+++++. .+.|++||+|+|
T Consensus 47 ng~~l~~~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 47 NGQRLGPGEPVPLKDGDIIRF 67 (68)
T ss_dssp TTEEESSTSEEEE-TTEEEEE
T ss_pred CCEEcCCCCEEECCCCCEEEc
Confidence 5577777 899999999986
No 319
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=64.69 E-value=11 Score=28.56 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=19.6
Q ss_pred CcccCCCCC-HhhHH----HH----h----cCCCeEEEeecCCcCh
Q psy2927 1 MQKVSDQIS-IEELD----II----Y----KIPHCVPLSAHHKWNF 33 (123)
Q Consensus 1 V~NKiD~~~-~e~l~----~l----~----~~~~~v~ISA~~~~gl 33 (123)
|+||+|++. .+.++ .+ . .+..++++||++...+
T Consensus 139 VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 139 VLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred EEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 579999873 22221 12 1 2346899999986444
No 320
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=64.47 E-value=18 Score=22.30 Aligned_cols=50 Identities=12% Similarity=0.073 Sum_probs=35.0
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEecC
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKKV 123 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~~ 123 (123)
.++-+..+ +|+.++...+- .-|-|| -+.|=..-.|..|++||-|.++.|+
T Consensus 8 k~~~~~~~-~tl~~lr~~~k-------~~~DI~----I~NGF~~~~d~~L~e~D~v~~IkkG 57 (57)
T PF14453_consen 8 KEIETEEN-TTLFELRKESK-------PDADIV----ILNGFPTKEDIELKEGDEVFLIKKG 57 (57)
T ss_pred EEEEcCCC-cCHHHHHHhhC-------CCCCEE----EEcCcccCCccccCCCCEEEEEeCC
Confidence 35666676 88888874432 355566 2345556789999999999998875
No 321
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=64.09 E-value=34 Score=22.11 Aligned_cols=54 Identities=6% Similarity=0.131 Sum_probs=34.0
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCcee-----CCCceecCCCeEEEEec
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKV-----GKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~v-----g~~~~l~d~Dvv~i~~~ 122 (123)
.+-+... +|+..+..++.....-.-...+. -|.|+++ -.+|-++|||+|..+.+
T Consensus 25 ~~~v~~~-~~l~~l~~~y~~~~gi~~~~~rf-----~f~G~~L~~~~T~~~l~m~d~d~I~v~l~ 83 (87)
T cd01763 25 FFKIKRS-TPLKKLMEAYCQRQGLSMNSVRF-----LFDGQRIRDNQTPDDLGMEDGDEIEVMLE 83 (87)
T ss_pred EEEEcCC-CHHHHHHHHHHHHhCCCccceEE-----EECCeECCCCCCHHHcCCCCCCEEEEEEe
Confidence 5667776 88999988877665432222221 1234443 35788999999988653
No 322
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=63.53 E-value=21 Score=19.08 Aligned_cols=55 Identities=13% Similarity=0.192 Sum_probs=35.5
Q ss_pred cEEEeCCCCCHHHHHHHhHHHH---HhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTI---AKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~---~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
.+.++.+ .|++++-..|...+ .+.|......+ ..+ ...-..++.+.+++.+.+..
T Consensus 11 ~~~~~~~-~tv~~l~~~i~~~~~~~~~~~~l~~~~~-~~~--~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 11 ELLVPSG-TTVADLKEKLAKKLGLPPEQQRLLVNGK-ILP--DSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred EEEcCCC-CcHHHHHHHHHHHHCcChHHeEEEECCe-ECC--CCCcHHHcCCCCCCEEEEEe
Confidence 5556665 89999998888876 55666655322 111 11111478899999998864
No 323
>KOG0095|consensus
Probab=62.15 E-value=4.6 Score=30.32 Aligned_cols=44 Identities=18% Similarity=0.033 Sum_probs=30.1
Q ss_pred CcccCCCCCHhhHH-HH-hc-----CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEELD-II-YK-----IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~l~-~l-~~-----~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|.||+|+.+..++. ++ .. +...+..||+.-.|.+.|...+.-.|
T Consensus 118 vgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 118 VGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred eccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHH
Confidence 57999987664432 22 11 22457799999999999887765544
No 324
>PRK08671 methionine aminopeptidase; Provisional
Probab=62.12 E-value=25 Score=27.84 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=31.8
Q ss_pred EeCCCCCHHHHHHHhHHHHHhh-----cceeEEecCCCCCCCceeCCCceecCCCeEEE
Q psy2927 66 LHTDRRSIEDFCNKLHRTIAKE-----FKYALVWGSSVKHQPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 66 l~~g~~tv~d~a~~IH~d~~~~-----f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i 119 (123)
++.| .|..|+|..++..+.+. |-..+.-|..+.|..-.-+.+-+|++||+|.|
T Consensus 23 i~pG-~se~ei~~~~~~~i~~~g~~~afp~~vs~n~~~~H~~p~~~d~~~l~~GDvV~i 80 (291)
T PRK08671 23 IKPG-AKLLDVAEFVENRIRELGAKPAFPCNISINEVAAHYTPSPGDERVFPEGDVVKL 80 (291)
T ss_pred ccCC-CcHHHHHHHHHHHHHHcCCccCCCCEEeeCCCccCCCCCCCCCcccCCCCEEEE
Confidence 3455 89999999998888763 22112112222222111233568999999988
No 325
>KOG0093|consensus
Probab=61.51 E-value=6.8 Score=29.37 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=28.6
Q ss_pred CcccCCCCCHh-----hHHHHh-cCC-CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIE-----ELDIIY-KIP-HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e-----~l~~l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|.||+|+-++. ....+. ... +.+..||+...|..++.+++...+
T Consensus 132 vgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 132 VGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDII 182 (193)
T ss_pred EecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHH
Confidence 57999976542 222221 111 467799999999988777766543
No 326
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=58.76 E-value=8.5 Score=30.15 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=22.3
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
++++.||.++.|+..|++.|-++|+
T Consensus 241 Pv~~gsa~~~~Gv~~Lld~i~~~~P 265 (267)
T cd04169 241 PVFFGSALNNFGVQELLDALVDLAP 265 (267)
T ss_pred EEEecccccCcCHHHHHHHHHHHCC
Confidence 4666899999999999999999885
No 327
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=58.39 E-value=14 Score=22.59 Aligned_cols=57 Identities=11% Similarity=0.281 Sum_probs=33.4
Q ss_pred cccEEEeCCCCCHHHHHHHhHHHHHhhc--ceeEEe-cCCCCCCCceeCCCceecCCCeEEEE
Q psy2927 61 QSPVVLHTDRRSIEDFCNKLHRTIAKEF--KYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIV 120 (123)
Q Consensus 61 ~~~~~l~~g~~tv~d~a~~IH~d~~~~f--~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~ 120 (123)
...+-+++. .|+..+...++....-.- .+-..| |. +-.+.+-=.++-|+|||+|.++
T Consensus 12 ~~~~~v~~~-~~~~~l~~~~~~~~~i~~~~~~~l~fdG~--~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 12 EIKFKVKPT-TTVSKLIEKYCEKKGIPPEESIRLIFDGK--RLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETT-SCCHHHHHHHHHHHTTTT-TTEEEEETTE--EE-TTSCHHHHT-STTEEEEEE
T ss_pred EEEEEECCC-CcHHHHHHHHHHhhCCCccceEEEEECCE--EcCCCCCHHHCCCCCCCEEEEE
Confidence 346777886 899998887777663322 122221 21 1122334457889999999875
No 328
>KOG1532|consensus
Probab=57.03 E-value=16 Score=30.09 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.3
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
..+.+||.+|.|++++..+|-+.+..
T Consensus 240 rtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 240 RTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred ceEEEecccCCcHHHHHHHHHHHHHH
Confidence 47889999999999999988877654
No 329
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=57.02 E-value=42 Score=20.33 Aligned_cols=57 Identities=12% Similarity=0.236 Sum_probs=33.8
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhh-cceeEEe-cCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKE-FKYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~-f~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
.+-++.. .|+.++=.+|+....=. ...-.++ |+. ....+-=.+|-++||++|.++.+
T Consensus 14 ~~~v~~~-~tv~~lK~~i~~~~g~~~~~qrL~~~g~~--L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 14 EIDIEPT-DKVERIKERVEEKEGIPPQQQRLIYSGKQ--MNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred EEEECCC-CCHHHHHHHHhHhhCCChhhEEEEECCeE--ccCCCCHHHcCCCCCCEEEEEEE
Confidence 4667776 89999988888765211 1112222 211 11122235788999999998753
No 330
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=55.38 E-value=28 Score=27.58 Aligned_cols=50 Identities=16% Similarity=0.271 Sum_probs=29.9
Q ss_pred EeCCCCCHHHHHHHhHHHHHh-----------hcceeEEecC---CCCCCCceeCCCceecCCCeEEE
Q psy2927 66 LHTDRRSIEDFCNKLHRTIAK-----------EFKYALVWGS---SVKHQPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 66 l~~g~~tv~d~a~~IH~d~~~-----------~f~~A~vwg~---s~k~~~q~vg~~~~l~d~Dvv~i 119 (123)
+..| .|..|++...|+-+.+ +|-++..-.- .+-+.|. .+.+|++||||.|
T Consensus 32 v~pG-vtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSvNe~v~HgiP~---d~~vlk~GDiv~I 95 (255)
T COG0024 32 VKPG-VTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVNEVVAHGIPG---DKKVLKEGDIVKI 95 (255)
T ss_pred cCCC-CCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeehhheeeecCCC---CCcccCCCCEEEE
Confidence 3455 8888998888877774 1111111100 0111233 7899999999998
No 331
>KOG1490|consensus
Probab=55.15 E-value=9.6 Score=33.55 Aligned_cols=35 Identities=20% Similarity=0.131 Sum_probs=23.5
Q ss_pred CcccCCCCCHhhHH----HH-h---cCC--CeEEEeecCCcChHH
Q psy2927 1 MQKVSDQISIEELD----II-Y---KIP--HCVPLSAHHKWNFDD 35 (123)
Q Consensus 1 V~NKiD~~~~e~l~----~l-~---~~~--~~v~ISA~~~~gld~ 35 (123)
|+||+|++.++++. .+ . ... .++..|+.+++|.-+
T Consensus 287 vlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~ 331 (620)
T KOG1490|consen 287 VLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMD 331 (620)
T ss_pred EeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceee
Confidence 68999998665432 12 1 222 368899999999844
No 332
>KOG4252|consensus
Probab=54.85 E-value=5.9 Score=30.61 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=24.0
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHH
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDD 35 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~ 35 (123)
|-||||+++. ++++.+. + ....+.+|++...|...
T Consensus 130 vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~ 171 (246)
T KOG4252|consen 130 VQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMH 171 (246)
T ss_pred eeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHH
Confidence 4699999855 3455553 1 22467799999999855
No 333
>KOG0087|consensus
Probab=53.42 E-value=19 Score=28.08 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=28.5
Q ss_pred CcccCCCCCH-----hhHHHHhc--CCCeEEEeecCCcChHH----HHHHHHHhhcc
Q psy2927 1 MQKVSDQISI-----EELDIIYK--IPHCVPLSAHHKWNFDD----LLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~~--~~~~v~ISA~~~~gld~----L~e~i~~~L~~ 46 (123)
|.||+||... ++-..+++ .-..+.+||..+.|.+. ++..|++.+..
T Consensus 125 vGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~ 181 (222)
T KOG0087|consen 125 VGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVSK 181 (222)
T ss_pred eecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHHH
Confidence 5799998752 22223321 12478899999999876 55555555443
No 334
>KOG0070|consensus
Probab=52.79 E-value=20 Score=27.09 Aligned_cols=44 Identities=18% Similarity=0.015 Sum_probs=30.3
Q ss_pred cccCCCC---CHhhHHHH---hc---CC-CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 2 QKVSDQI---SIEELDII---YK---IP-HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 2 ~NKiD~~---~~e~l~~l---~~---~~-~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
.||.|+. +..++... .+ .+ +.-..+|.+|+||.+-++-+.+.+.
T Consensus 125 aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 125 ANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred echhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHh
Confidence 6999977 33444322 12 12 3556899999999999998888765
No 335
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=52.22 E-value=13 Score=27.05 Aligned_cols=25 Identities=24% Similarity=0.650 Sum_probs=20.8
Q ss_pred CHHHHHHHhHHHHH-hhcceeEEecC
Q psy2927 72 SIEDFCNKLHRTIA-KEFKYALVWGS 96 (123)
Q Consensus 72 tv~d~a~~IH~d~~-~~f~~A~vwg~ 96 (123)
|++++|..+++++. +.-...+||-+
T Consensus 4 T~~Elc~~L~~~y~~dE~l~LlIWT~ 29 (139)
T PF07128_consen 4 TVKELCRRLKRDYPNDEPLALLIWTR 29 (139)
T ss_pred cHHHHHHHHHHhCCCCCeeEEEEecH
Confidence 99999999999998 56677789953
No 336
>KOG2484|consensus
Probab=51.71 E-value=11 Score=32.14 Aligned_cols=29 Identities=10% Similarity=0.040 Sum_probs=19.3
Q ss_pred CcccCCCCCHhhHHHH----h-cCCCeEEEeecC
Q psy2927 1 MQKVSDQISIEELDII----Y-KIPHCVPLSAHH 29 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l----~-~~~~~v~ISA~~ 29 (123)
|+||+|+++.|.++.. . .+|.+++.++..
T Consensus 183 VLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~ 216 (435)
T KOG2484|consen 183 VLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQ 216 (435)
T ss_pred EeehhccCCHHHHHHHHHHHHhhCCcceeecccc
Confidence 6899999999887633 2 456555544433
No 337
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=51.30 E-value=16 Score=30.02 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=32.2
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeC----CCceecCCCeEEEEe
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVG----KEHVLNDEDVVQIVK 121 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg----~~~~l~d~Dvv~i~~ 121 (123)
+++-++.+ .|+.|+.....-+ .+ ..|+ ...++-|. .++.|+|||.|+|++
T Consensus 8 k~~el~e~-~TL~dLL~~L~i~--~~-~VAV------eVNgeIVpr~~w~~t~LkeGD~IEII~ 61 (326)
T PRK11840 8 EPRQVPAG-LTIAALLAELGLA--PK-KVAV------ERNLEIVPRSEYGQVALEEGDELEIVH 61 (326)
T ss_pred EEEecCCC-CcHHHHHHHcCCC--CC-eEEE------EECCEECCHHHcCccccCCCCEEEEEE
Confidence 35667776 8999888654221 11 2222 13455555 567999999999986
No 338
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=51.22 E-value=85 Score=22.15 Aligned_cols=32 Identities=16% Similarity=-0.154 Sum_probs=20.3
Q ss_pred CHhhHHHH--hcCCCeEEEeecCCcChHHHHHHH
Q psy2927 9 SIEELDII--YKIPHCVPLSAHHKWNFDDLLEKM 40 (123)
Q Consensus 9 ~~e~l~~l--~~~~~~v~ISA~~~~gld~L~e~i 40 (123)
+.+++.+. ...++.|.+|+..+.....+.+.+
T Consensus 42 p~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~ 75 (137)
T PRK02261 42 SQEEFIDAAIETDADAILVSSLYGHGEIDCRGLR 75 (137)
T ss_pred CHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHH
Confidence 34444333 345789999999987775544443
No 339
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=50.69 E-value=18 Score=29.53 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=12.4
Q ss_pred CcccCCCCCHhhHHHH
Q psy2927 1 MQKVSDQISIEELDII 16 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l 16 (123)
|+||+|+++++.++.+
T Consensus 151 vlNK~Dlv~~~~l~~l 166 (323)
T COG0523 151 VLNKTDLVDAEELEAL 166 (323)
T ss_pred EEecccCCCHHHHHHH
Confidence 5899999988765544
No 340
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=50.66 E-value=26 Score=24.08 Aligned_cols=60 Identities=25% Similarity=0.256 Sum_probs=39.8
Q ss_pred ceEEeCCCCCCCCCcccEEEeCCCCCHHHH----HHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCe
Q psy2927 47 TRIYTKPKGQLPDYQSPVVLHTDRRSIEDF----CNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDV 116 (123)
Q Consensus 47 irvytk~~g~~pd~~~~~~l~~g~~tv~d~----a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dv 116 (123)
.+||+....+.+- .=|+...+. +|+.|+ +.++|-|-.+.+.-|.| |-.| |...+|+.+|-
T Consensus 13 l~IyP~~~a~~~~-~C~v~a~k~-sTAa~VI~~~i~~L~Ld~tk~YvLaEV-----kEsG---gEEwvL~p~D~ 76 (105)
T cd01779 13 LHIYPQLIAESTI-SCRVTATKD-STAADVIDDVIASLQLDGTKCYVLAEV-----KESG---GEEWVLDPTDS 76 (105)
T ss_pred EEEccCCCCCCce-EeEeEeccC-CcHHHHHHHHHHHhCcCccccEEEEEe-----eccC---CeeeecCcccC
Confidence 5788876654443 348888887 887654 56677777788888887 3232 45666766663
No 341
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=50.37 E-value=34 Score=21.61 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=22.0
Q ss_pred ceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHh
Q psy2927 47 TRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKL 80 (123)
Q Consensus 47 irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~I 80 (123)
+|||.... ....-..+.++.+ +|+.|++..+
T Consensus 2 ikV~~~~~--~~~~~kti~V~~~-~t~~~Vi~~~ 32 (87)
T cd01768 2 LRVYPEDP--SGGTYKTLRVSKD-TTAQDVIQQL 32 (87)
T ss_pred EEEeCCcC--CCccEEEEEECCC-CCHHHHHHHH
Confidence 68888664 2224568999997 9999987443
No 342
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=50.35 E-value=25 Score=30.29 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=19.4
Q ss_pred eEEEeecCCcChHHHHHHHHHhhccce
Q psy2927 22 CVPLSAHHKWNFDDLLEKMWEYLKLTR 48 (123)
Q Consensus 22 ~v~ISA~~~~gld~L~e~i~~~L~~ir 48 (123)
++.+||.+|+|+|-| ..+|..|+..|
T Consensus 316 i~~tSsVTg~GldlL-~e~f~~Lp~rr 341 (527)
T COG5258 316 IFYTSSVTGEGLDLL-DEFFLLLPKRR 341 (527)
T ss_pred EEEEecccCccHHHH-HHHHHhCCccc
Confidence 355999999999865 55667777655
No 343
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=50.19 E-value=21 Score=27.24 Aligned_cols=12 Identities=42% Similarity=0.587 Sum_probs=10.2
Q ss_pred eEEEeecCCcCh
Q psy2927 22 CVPLSAHHKWNF 33 (123)
Q Consensus 22 ~v~ISA~~~~gl 33 (123)
+++-||+.||++
T Consensus 189 v~f~S~~~gw~f 200 (222)
T cd01885 189 VAFGSALHGWGF 200 (222)
T ss_pred EEEEecccCEEe
Confidence 778899999877
No 344
>KOG0080|consensus
Probab=49.99 E-value=15 Score=27.94 Aligned_cols=37 Identities=19% Similarity=0.061 Sum_probs=21.6
Q ss_pred CcccCCCCCHhhHH-----HHh-cCC-CeEEEeecCCcChHHHH
Q psy2927 1 MQKVSDQISIEELD-----IIY-KIP-HCVPLSAHHKWNFDDLL 37 (123)
Q Consensus 1 V~NKiD~~~~e~l~-----~l~-~~~-~~v~ISA~~~~gld~L~ 37 (123)
|.||||.-++..+. .++ ++. -.+..||++.+|...-.
T Consensus 123 VgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 123 VGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred hcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 67999965332221 122 221 25668999999985433
No 345
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=49.63 E-value=15 Score=28.12 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.0
Q ss_pred eEEEeecCCcChHHHHHHHHHhhc
Q psy2927 22 CVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 22 ~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
+++-||.++.|++.|++.|-++++
T Consensus 212 v~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 212 VYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EEEccccCCcCHHHHHHHHHHhcC
Confidence 455699999999999999999875
No 346
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=49.41 E-value=14 Score=28.92 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.0
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
++++-||.++.|++.|++.|-++++
T Consensus 244 PV~~gSa~~~~Gi~~lld~i~~~~p 268 (270)
T cd01886 244 PVLCGSAFKNKGVQPLLDAVVDYLP 268 (270)
T ss_pred EEEeCcCCCCcCHHHHHHHHHHhcC
Confidence 4666899999999999999999875
No 347
>KOG1654|consensus
Probab=49.23 E-value=55 Score=23.03 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=26.5
Q ss_pred CCCCCCCCcc-cEEEeCCCCCHHHHHHHhHHHHHhh
Q psy2927 53 PKGQLPDYQS-PVVLHTDRRSIEDFCNKLHRTIAKE 87 (123)
Q Consensus 53 ~~g~~pd~~~-~~~l~~g~~tv~d~a~~IH~d~~~~ 87 (123)
++.+.|+.++ -+++|.. -||+++...|-+.|.=+
T Consensus 37 ~~~~lp~lDK~KyLVP~d-ltvgqfi~iIRkRiqL~ 71 (116)
T KOG1654|consen 37 GKSQLPDLDKKKYLVPDD-LTVGQFIKIIRKRIQLS 71 (116)
T ss_pred ccccCcccccceeecccc-ccHHHHHHHHHHHhccC
Confidence 3344687777 8999997 99999999888887543
No 348
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=48.54 E-value=12 Score=25.71 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.7
Q ss_pred CCCCceeCCCceecCCCeEEEE
Q psy2927 99 KHQPQKVGKEHVLNDEDVVQIV 120 (123)
Q Consensus 99 k~~~q~vg~~~~l~d~Dvv~i~ 120 (123)
+.+|+++-.++.+..||+|+|.
T Consensus 37 ~vNG~~aKpS~~VK~GD~l~i~ 58 (100)
T COG1188 37 KVNGQRAKPSKEVKVGDILTIR 58 (100)
T ss_pred EECCEEcccccccCCCCEEEEE
Confidence 5688999999999999999985
No 349
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=48.45 E-value=66 Score=25.46 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=39.3
Q ss_pred eEEEeecCCcChHHHHHHHHHhhccceE--Ee-------------------CCCC--CCCCCcccEEEeCCCCCHHHHHH
Q psy2927 22 CVPLSAHHKWNFDDLLEKMWEYLKLTRI--YT-------------------KPKG--QLPDYQSPVVLHTDRRSIEDFCN 78 (123)
Q Consensus 22 ~v~ISA~~~~gld~L~e~i~~~L~~irv--yt-------------------k~~g--~~pd~~~~~~l~~g~~tv~d~a~ 78 (123)
+-.||+.+|-++.+.+..+.+.-+.+.+ |+ ...+ ..+| .++|-+||.+.+||..
T Consensus 17 I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~D---viii~RGGGs~eDL~~ 93 (319)
T PF02601_consen 17 IAVITSPTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFD---VIIIIRGGGSIEDLWA 93 (319)
T ss_pred EEEEeCCchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhcccccccc---EEEEecCCCChHHhcc
Confidence 4458889999999888888887665444 44 1111 1234 7788888789988864
Q ss_pred HhHHHHH
Q psy2927 79 KLHRTIA 85 (123)
Q Consensus 79 ~IH~d~~ 85 (123)
-=...++
T Consensus 94 FN~e~va 100 (319)
T PF02601_consen 94 FNDEEVA 100 (319)
T ss_pred cChHHHH
Confidence 3333333
No 350
>PRK12740 elongation factor G; Reviewed
Probab=47.50 E-value=15 Score=32.35 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=23.1
Q ss_pred eEEEeecCCcChHHHHHHHHHhhccc
Q psy2927 22 CVPLSAHHKWNFDDLLEKMWEYLKLT 47 (123)
Q Consensus 22 ~v~ISA~~~~gld~L~e~i~~~L~~i 47 (123)
+++.||.+|.|++.|++.|.+.|+.-
T Consensus 239 v~~gSA~~~~Gv~~LLd~i~~~lPsp 264 (668)
T PRK12740 239 VFCGSALKNKGVQRLLDAVVDYLPSP 264 (668)
T ss_pred EEeccccCCccHHHHHHHHHHHCCCh
Confidence 56689999999999999999998763
No 351
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=47.21 E-value=61 Score=19.34 Aligned_cols=58 Identities=16% Similarity=0.291 Sum_probs=33.5
Q ss_pred cccEEEeCCCCCHHHHHHHhHHHHHhh-cceeEEe-cCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 61 QSPVVLHTDRRSIEDFCNKLHRTIAKE-FKYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 61 ~~~~~l~~g~~tv~d~a~~IH~d~~~~-f~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
..++-+... .|+.++-.+|+....-. -..-+++ |+-.. ..+ -=.+|-++||++|.++.
T Consensus 12 ~~~~~v~~~-~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~-~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 12 THTFTVEEE-ITVLDLKEKIAEEVGIPVEQQRLIYSGRVLK-DDE-TLSEYKVEDGHTIHLVK 71 (72)
T ss_pred EEEEEECCC-CcHHHHHHHHHHHHCcCHHHeEEEECCEECC-CcC-cHHHCCCCCCCEEEEEe
Confidence 346777776 89999998988764210 0111222 22111 112 22567788999998875
No 352
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=46.95 E-value=78 Score=20.49 Aligned_cols=56 Identities=13% Similarity=0.155 Sum_probs=35.6
Q ss_pred eEEEeecCCcChHHHHHHHHHhhcc--ceEEeCCCCCCCCCcccEE-EeCCCCCHHHHHHHh
Q psy2927 22 CVPLSAHHKWNFDDLLEKMWEYLKL--TRIYTKPKGQLPDYQSPVV-LHTDRRSIEDFCNKL 80 (123)
Q Consensus 22 ~v~ISA~~~~gld~L~e~i~~~L~~--irvytk~~g~~pd~~~~~~-l~~g~~tv~d~a~~I 80 (123)
.+..-...+.+=.++.+++.+..+. ..|-|-. .++++.++++ |..| .++.|+|.+|
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~--~~~~~KKA~VtL~~g-~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLI--TPRGEKKAYVKLAEE-YAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEE--cCCCceEEEEEECCC-CcHHHHHHhh
Confidence 3444445566777777777776544 3333311 1245677777 7786 9999999886
No 353
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=46.13 E-value=19 Score=21.45 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=16.5
Q ss_pred CCCcee-CCCceecCCCeEEE
Q psy2927 100 HQPQKV-GKEHVLNDEDVVQI 119 (123)
Q Consensus 100 ~~~q~v-g~~~~l~d~Dvv~i 119 (123)
-.|+.+ ..+|.|..||+|+|
T Consensus 38 VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 38 VNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred ECCEEccCCCCCCCCCCEEEe
Confidence 366777 67999999999986
No 354
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=46.07 E-value=18 Score=23.39 Aligned_cols=20 Identities=10% Similarity=0.345 Sum_probs=17.5
Q ss_pred ccEEEeCCCCCHHHHHHHhHH
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHR 82 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~ 82 (123)
.|||+|.. ..+++....||+
T Consensus 44 kPWI~Pd~-~~ve~i~~vi~s 63 (74)
T COG3592 44 KPWIMPDA-VDVEEIVKVIDT 63 (74)
T ss_pred CCccCCCC-CCHHHHHHHHHh
Confidence 48999997 899999988885
No 355
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=45.80 E-value=77 Score=22.30 Aligned_cols=53 Identities=9% Similarity=0.142 Sum_probs=33.8
Q ss_pred EeCCCCCHHHHHHHhHHHHHhh-----cceeEEecCCCCCCCceeCCCceecCCCeEEEE
Q psy2927 66 LHTDRRSIEDFCNKLHRTIAKE-----FKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIV 120 (123)
Q Consensus 66 l~~g~~tv~d~a~~IH~d~~~~-----f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~ 120 (123)
++.| .|-.|++..++..+.+. |-...-.|..+. .......+.++++||+|.|-
T Consensus 22 ~~~G-~te~ei~~~~~~~~~~~g~~~~~~~~v~~g~~~~-~~h~~~~~~~i~~gd~v~~d 79 (207)
T cd01066 22 IRPG-VTEAEVAAAIEQALRAAGGYPAGPTIVGSGARTA-LPHYRPDDRRLQEGDLVLVD 79 (207)
T ss_pred CcCC-CCHHHHHHHHHHHHHHcCCCCCCCcEEEECcccc-CcCCCCCCCCcCCCCEEEEE
Confidence 3455 89999999999988875 333333343211 12222337799999999884
No 356
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=45.40 E-value=23 Score=26.03 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=17.6
Q ss_pred CeEEEeecCCcChHHHHHHHHH
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWE 42 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~ 42 (123)
+++.+|+.+++|+++|.+.+..
T Consensus 14 ~v~~~S~~~~~g~~~l~~~l~~ 35 (161)
T PF03193_consen 14 PVFFISAKTGEGIEELKELLKG 35 (161)
T ss_dssp EEEE-BTTTTTTHHHHHHHHTT
T ss_pred cEEEEeCCCCcCHHHHHHHhcC
Confidence 4788999999999998887665
No 357
>KOG0075|consensus
Probab=43.43 E-value=58 Score=24.46 Aligned_cols=44 Identities=23% Similarity=0.233 Sum_probs=29.3
Q ss_pred cccCCCCCH---hh-HHHH--hcCC----CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 2 QKVSDQISI---EE-LDII--YKIP----HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 2 ~NKiD~~~~---e~-l~~l--~~~~----~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
.||+|+.+. .. ++++ .... -.+.|||+...|+|.+++-+.+.-.
T Consensus 129 GnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 129 GNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred cccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 589997633 22 3444 1111 2466999999999999988877644
No 358
>KOG0086|consensus
Probab=42.73 E-value=28 Score=26.27 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=26.5
Q ss_pred CcccCCCCCHhhHHHH--hcC---CC--eEEEeecCCcChHH-HHHHHHHhhc
Q psy2927 1 MQKVSDQISIEELDII--YKI---PH--CVPLSAHHKWNFDD-LLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l--~~~---~~--~v~ISA~~~~gld~-L~e~i~~~L~ 45 (123)
+.||.|+-...++..+ .+| .+ ....||.+|+|+++ .+......|.
T Consensus 120 ~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~ 172 (214)
T KOG0086|consen 120 CGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 172 (214)
T ss_pred eCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHH
Confidence 3599997655444322 122 22 45599999999988 3333333343
No 359
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=42.63 E-value=6.5 Score=32.91 Aligned_cols=53 Identities=19% Similarity=0.099 Sum_probs=36.1
Q ss_pred HHHHHHHhhccceEEeCCCCC---------CCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEec
Q psy2927 36 LLEKMWEYLKLTRIYTKPKGQ---------LPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWG 95 (123)
Q Consensus 36 L~e~i~~~L~~irvytk~~g~---------~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg 95 (123)
|.+.+-.....+|+||=+.|. .|| -.....+ +|+.+++..||.+ +|.+|+-=|
T Consensus 288 l~~~ft~g~~evrawti~~g~kap~aaG~Ih~D---fe~~fi~-aevi~~~d~i~~~---~~~~Akeag 349 (372)
T COG0012 288 LQTYFTAGVKEVRAWTIKDGSKAPDAAGVIHPD---FEKGFIR-AEVISYADLIHYG---GEAAAKEAG 349 (372)
T ss_pred hhHHHhhcCCeEEEEEeccCCcccccCCccccc---hhhcccc-ceEeeHHHHHhcC---cHHHHHHhc
Confidence 444444455889999955444 345 2334454 9999999999998 888876544
No 360
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=42.19 E-value=55 Score=20.48 Aligned_cols=34 Identities=6% Similarity=0.108 Sum_probs=24.2
Q ss_pred ccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHh
Q psy2927 45 KLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKL 80 (123)
Q Consensus 45 ~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~I 80 (123)
+.+|||+....... ....+.++.. +|+.|++..+
T Consensus 3 ~~lrVy~~~~~~~~-~~k~i~v~~~-tTa~evi~~~ 36 (93)
T PF00788_consen 3 GVLRVYDGDGSPGS-TYKTIKVSSS-TTAREVIEMA 36 (93)
T ss_dssp EEEEEEETTSSSCC-SEEEEEEETT-SBHHHHHHHH
T ss_pred eEEEEEcCCCCCCc-cEEEEEECCC-CCHHHHHHHH
Confidence 35789995544222 4678999997 9999998543
No 361
>KOG1372|consensus
Probab=42.06 E-value=54 Score=26.75 Aligned_cols=54 Identities=37% Similarity=0.744 Sum_probs=40.8
Q ss_pred EeecCCcCh-HHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCC-CCCHHHHHHHhHHHHHhhcceeEEe
Q psy2927 25 LSAHHKWNF-DDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTD-RRSIEDFCNKLHRTIAKEFKYALVW 94 (123)
Q Consensus 25 ISA~~~~gl-d~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g-~~tv~d~a~~IH~d~~~~f~~A~vw 94 (123)
.||+..||. .+..|++|.+|.. ..|| .+++--| +-||+++|+.--..+.+ -++|
T Consensus 248 L~a~RDWGhA~dYVEAMW~mLQ~---------d~Pd---DfViATge~hsVrEF~~~aF~~ig~----~l~W 303 (376)
T KOG1372|consen 248 LSALRDWGHAGDYVEAMWLMLQQ---------DSPD---DFVIATGEQHSVREFCNLAFAEIGE----VLNW 303 (376)
T ss_pred hhhhcccchhHHHHHHHHHHHhc---------CCCC---ceEEecCCcccHHHHHHHHHHhhCc----EEee
Confidence 788888887 5689999999964 3465 7888776 46999999875555543 3678
No 362
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=40.98 E-value=25 Score=30.43 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=23.6
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
++++.||.++.|+++|++.|.++++.
T Consensus 250 PV~~GSA~~n~Gv~~LLd~i~~~~P~ 275 (526)
T PRK00741 250 PVFFGSALNNFGVQEFLDAFVEWAPA 275 (526)
T ss_pred EEEEeecccCcCHHHHHHHHHHHCCC
Confidence 47779999999999999999999974
No 363
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=40.72 E-value=57 Score=20.23 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=34.1
Q ss_pred CcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 60 YQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 60 ~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
..+.+.++.+ .|-.||..+|..-|.. .++.+.+.|.=+|||.|.|.+
T Consensus 11 ~~~~~~~~~~-~s~~dL~~~i~~~~~~--------------~~~~~~l~Y~Dedgd~v~l~s 57 (81)
T smart00666 11 ETRRLSVPRD-ISFEDLRSKVAKRFGL--------------DNQSFTLKYQDEDGDLVSLTS 57 (81)
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHhCC--------------CCCCeEEEEECCCCCEEEecC
Confidence 3557888886 9999999888876641 124456677778899888754
No 364
>COG5417 Uncharacterized small protein [Function unknown]
Probab=39.61 E-value=18 Score=23.83 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=12.6
Q ss_pred eCCCceecCCCeEEE
Q psy2927 105 VGKEHVLNDEDVVQI 119 (123)
Q Consensus 105 vg~~~~l~d~Dvv~i 119 (123)
.=.||.+.|||+++|
T Consensus 66 kL~d~~IadGD~Lei 80 (81)
T COG5417 66 KLIDYQIADGDILEI 80 (81)
T ss_pred eEEeccccCCCEEEe
Confidence 346899999999998
No 365
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=38.82 E-value=67 Score=25.50 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=29.5
Q ss_pred eCCCCCHHHHHHHhHHHHHhh-----cceeEEecC-CCCCCCceeCCCceecCCCeEEE
Q psy2927 67 HTDRRSIEDFCNKLHRTIAKE-----FKYALVWGS-SVKHQPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 67 ~~g~~tv~d~a~~IH~d~~~~-----f~~A~vwg~-s~k~~~q~vg~~~~l~d~Dvv~i 119 (123)
+.| .|..|+|..+...+.+. |-..+--+. .+-+.|. -+-+-.|++||+|.|
T Consensus 27 ~~G-~se~el~~~~e~~~~~~g~~~aFp~~vs~n~~~~H~~p~-~~d~~~l~~GDvV~i 83 (295)
T TIGR00501 27 VPG-VKLLEVAEFVENRIRELGAEPAFPCNISINECAAHFTPK-AGDKTVFKDGDVVKL 83 (295)
T ss_pred cCC-CCHHHHHHHHHHHHHHcCCCCCCCcceecCCEeeCCCCC-CCcCccCCCCCEEEE
Confidence 455 89999999998888764 211110011 1111221 133457999999988
No 366
>KOG0097|consensus
Probab=38.53 E-value=26 Score=26.08 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=21.9
Q ss_pred CcccCCCCCHhh-----HHHHhcCCC--eEEEeecCCcChHH
Q psy2927 1 MQKVSDQISIEE-----LDIIYKIPH--CVPLSAHHKWNFDD 35 (123)
Q Consensus 1 V~NKiD~~~~e~-----l~~l~~~~~--~v~ISA~~~~gld~ 35 (123)
+.||.|+-+..+ ...+.+... .+..||++|.|+++
T Consensus 122 ignkadle~qrdv~yeeak~faeengl~fle~saktg~nved 163 (215)
T KOG0097|consen 122 IGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVED 163 (215)
T ss_pred ecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHH
Confidence 359999765532 223322222 45699999999976
No 367
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=38.22 E-value=18 Score=24.32 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=17.6
Q ss_pred CCCceeCCCceecCCCeEEE
Q psy2927 100 HQPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 100 ~~~q~vg~~~~l~d~Dvv~i 119 (123)
-.|+|+|.-|.++||-+|.+
T Consensus 71 G~G~~~G~aYrl~~Gk~I~V 90 (92)
T PF09919_consen 71 GSGERLGTAYRLKDGKLIYV 90 (92)
T ss_pred CCCeECeEEEEcCCceEEEe
Confidence 46799999999999998865
No 368
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=37.98 E-value=46 Score=23.95 Aligned_cols=50 Identities=20% Similarity=0.524 Sum_probs=32.5
Q ss_pred cChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCC----HHHHHHHhHHHH
Q psy2927 31 WNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRS----IEDFCNKLHRTI 84 (123)
Q Consensus 31 ~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~t----v~d~a~~IH~d~ 84 (123)
..-++|++++++.|+-.. -++.+=+.|. |-+...|.-| -.|+|..+||+-
T Consensus 5 ~~Y~~lL~R~~~~lp~~~-~~~~R~~~p~---~~v~~eG~kTvi~Nf~~I~~~L~R~~ 58 (138)
T PRK03988 5 YDYEELLDRAYEKLPEKV-FKESRFEVPK---PDVRIEGNRTIIRNFKEIADRLNRDP 58 (138)
T ss_pred cCHHHHHHHHHHHCcccc-CCCcceeCCC---CeEEEEcCcEEEecHHHHHHHHCCCH
Confidence 356899999999997643 2222222344 6667776224 589999999853
No 369
>PRK13351 elongation factor G; Reviewed
Probab=37.75 E-value=26 Score=31.05 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.4
Q ss_pred eEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 22 CVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 22 ~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
+++.||.++.|++.|++.|.+.|+.
T Consensus 255 V~~gSA~~~~Gv~~LLd~I~~~lPs 279 (687)
T PRK13351 255 VLFGSALKNIGIEPLLDAVVDYLPS 279 (687)
T ss_pred EEecccCcCccHHHHHHHHHHHCCC
Confidence 5557999999999999999999876
No 370
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=37.67 E-value=77 Score=27.89 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=38.8
Q ss_pred EEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 64 VVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 64 ~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
..++.| +|..|+|..+-..+.+....|.| .|+-+.+++.+.+..-|++++
T Consensus 16 ~~~~~g-~t~~~ia~~~~~~~~~~iv~a~v-------n~~l~dL~~~i~~d~~i~fv~ 65 (639)
T PRK12444 16 KEFVKG-ITLEEIAGSISSSLKKKAVAGKV-------NDKLYDLRRNLEEDAEVEIIT 65 (639)
T ss_pred EEecCC-CCHHHHHHHhhhhcchheEEEEE-------CCEEEEcCcccCCCCeEEEec
Confidence 446787 99999998887766666666665 567788999999888888875
No 371
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=37.27 E-value=1.1e+02 Score=19.24 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=35.6
Q ss_pred EEEeCCCCCHHHHHHHhHHHH---HhhcceeEEe-cCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 64 VVLHTDRRSIEDFCNKLHRTI---AKEFKYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 64 ~~l~~g~~tv~d~a~~IH~d~---~~~f~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
+-++.. .||.++=.+|+... .++++...+. |+-.+ ....+ .+|-+.+|+.|.++.+
T Consensus 17 ~~v~~~-~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~-D~~tL-~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 17 VSLRDS-MTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQ-DGVPL-VSQGLGPGSTVLLVVQ 76 (80)
T ss_pred EEcCCC-CcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCC-CCCCH-HHcCCCCCCEEEEEEE
Confidence 345565 89999998998776 3455554443 22211 22333 5788899999988654
No 372
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=37.20 E-value=19 Score=22.21 Aligned_cols=13 Identities=23% Similarity=0.212 Sum_probs=8.4
Q ss_pred CCceecCCCeEEE
Q psy2927 107 KEHVLNDEDVVQI 119 (123)
Q Consensus 107 ~~~~l~d~Dvv~i 119 (123)
.+|.|+|||.|.+
T Consensus 55 ~~~~l~~GD~i~~ 67 (68)
T PF14478_consen 55 GSYKLKDGDKITW 67 (68)
T ss_dssp CC-B--TTEEEEE
T ss_pred ceeEeCCCCEEEe
Confidence 4689999999986
No 373
>KOG1769|consensus
Probab=37.17 E-value=29 Score=23.80 Aligned_cols=55 Identities=9% Similarity=0.182 Sum_probs=29.5
Q ss_pred cccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCc-----eecCCCeEEEEe
Q psy2927 61 QSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEH-----VLNDEDVVQIVK 121 (123)
Q Consensus 61 ~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~-----~l~d~Dvv~i~~ 121 (123)
..-|-|++. ++-.-|-......-.....-=+ =.|.|||+..+| .++|||+|+.+.
T Consensus 32 ~~~Fkikr~-t~LkKLM~aYc~r~Gl~~~s~R-----FlFdG~rI~~~~TP~~L~mEd~D~Iev~~ 91 (99)
T KOG1769|consen 32 VVVFKIKRH-TPLKKLMKAYCERQGLSMNSLR-----FLFDGQRIRETHTPADLEMEDGDEIEVVQ 91 (99)
T ss_pred EEEEEeecC-ChHHHHHHHHHHHcCCccceEE-----EEECCcCcCCCCChhhhCCcCCcEEEEEe
Confidence 335666775 5545454333332222211111 134667766655 689999999864
No 374
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=37.08 E-value=82 Score=26.10 Aligned_cols=62 Identities=13% Similarity=0.254 Sum_probs=39.5
Q ss_pred CcCh--HHHHHHHHHhhccceEEeCCCCC-CCCCcccE------EEeCCCCCHHHHHHHhHHHHHhhccee
Q psy2927 30 KWNF--DDLLEKMWEYLKLTRIYTKPKGQ-LPDYQSPV------VLHTDRRSIEDFCNKLHRTIAKEFKYA 91 (123)
Q Consensus 30 ~~gl--d~L~e~i~~~L~~irvytk~~g~-~pd~~~~~------~l~~g~~tv~d~a~~IH~d~~~~f~~A 91 (123)
.||. +.++..|.+.=+-...-.-+|.. .|+++..+ +.|.||+++-+-|.++-.-|.++|.+|
T Consensus 59 pwg~ynes~~~eI~~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~a 129 (337)
T COG2247 59 PWGIYNESVLDEIIELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNA 129 (337)
T ss_pred CcccccHHHHHHHHhhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhh
Confidence 3555 55666666643333333344444 56666543 677778998888888888888777665
No 375
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=36.97 E-value=33 Score=29.69 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=23.4
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
++++-||.++.|+++|++.+.++++.
T Consensus 251 PV~~GSA~~n~Gv~~LLd~i~~~~Ps 276 (527)
T TIGR00503 251 PVFFGTALGNFGVDHFLDGLLQWAPK 276 (527)
T ss_pred EEEEeecccCccHHHHHHHHHHHCCC
Confidence 46778999999999999999999975
No 376
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=36.78 E-value=61 Score=23.40 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.2
Q ss_pred CeEEEeec--CCcChHHHHHHHHHhhc
Q psy2927 21 HCVPLSAH--HKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 21 ~~v~ISA~--~~~gld~L~e~i~~~L~ 45 (123)
..+.+||. .+.+++++.+.+.+.+.
T Consensus 159 ~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 159 ALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred ceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 36789999 99999999988888774
No 377
>KOG0394|consensus
Probab=36.37 E-value=67 Score=24.83 Aligned_cols=47 Identities=15% Similarity=-0.004 Sum_probs=28.1
Q ss_pred CcccCCCCCHh-------hHHHH-hcC--CCeEEEeecCCcChHHHHHH-HHHhhccc
Q psy2927 1 MQKVSDQISIE-------ELDII-YKI--PHCVPLSAHHKWNFDDLLEK-MWEYLKLT 47 (123)
Q Consensus 1 V~NKiD~~~~e-------~l~~l-~~~--~~~v~ISA~~~~gld~L~e~-i~~~L~~i 47 (123)
+.||+|+-... ..... ... -+.+.+||+...|+++..+. .+..|..-
T Consensus 124 lGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 124 LGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred EcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhcc
Confidence 36999985421 11222 111 13677999999999875554 45556543
No 378
>KOG0126|consensus
Probab=36.18 E-value=27 Score=26.92 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=15.3
Q ss_pred CCCceecCCCeEEEEec
Q psy2927 106 GKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 106 g~~~~l~d~Dvv~i~~~ 122 (123)
|++|.|..|||+.++|.
T Consensus 42 gl~~~LtEgDil~VFSq 58 (219)
T KOG0126|consen 42 GLPYELTEGDILCVFSQ 58 (219)
T ss_pred CCcccccCCcEEEEeec
Confidence 78999999999999874
No 379
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=35.98 E-value=81 Score=20.02 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=22.4
Q ss_pred ccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHh
Q psy2927 45 KLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKL 80 (123)
Q Consensus 45 ~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~I 80 (123)
..+|||.... ....-..+.++.+ +|+.|++..+
T Consensus 3 ~~lrV~~~~~--~~~~~kti~v~~~-tTa~~Vi~~~ 35 (90)
T smart00314 3 FVLRVYVDDL--PGGTYKTLRVSSR-TTARDVIQQL 35 (90)
T ss_pred eEEEEecccC--CCCcEEEEEECCC-CCHHHHHHHH
Confidence 3578888542 1224568888897 9999997443
No 380
>PTZ00044 ubiquitin; Provisional
Probab=35.77 E-value=1e+02 Score=18.72 Aligned_cols=58 Identities=10% Similarity=0.248 Sum_probs=35.3
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhc-ceeEEe-cCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEF-KYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f-~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
.++-+... .|+.++-.+|.....=.- ..-.++ |+... ....+ .+|-+++|+.|.++.+
T Consensus 13 ~~l~v~~~-~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~l-~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 13 QSFNFEPD-NTVQQVKMALQEKEGIDVKQIRLIYSGKQMS-DDLKL-SDYKVVPGSTIHMVLQ 72 (76)
T ss_pred EEEEECCC-CcHHHHHHHHHHHHCCCHHHeEEEECCEEcc-CCCcH-HHcCCCCCCEEEEEEE
Confidence 35666665 899999888887663111 122222 33222 33444 5788999999988753
No 381
>KOG0073|consensus
Probab=35.26 E-value=49 Score=25.09 Aligned_cols=35 Identities=23% Similarity=0.116 Sum_probs=21.2
Q ss_pred CcccCCCC---CHhhHH------HHhc--CCCeEEEeecCCcChHH
Q psy2927 1 MQKVSDQI---SIEELD------IIYK--IPHCVPLSAHHKWNFDD 35 (123)
Q Consensus 1 V~NKiD~~---~~e~l~------~l~~--~~~~v~ISA~~~~gld~ 35 (123)
++||.|+. +.+++. .+.+ .-..+-+||.+|+++.+
T Consensus 123 lank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 123 LANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLE 168 (185)
T ss_pred EEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHH
Confidence 47999987 233332 2211 11467799999976644
No 382
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=34.84 E-value=1e+02 Score=25.62 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=14.5
Q ss_pred eCCCCCHHHHHHHhHHHHHh
Q psy2927 67 HTDRRSIEDFCNKLHRTIAK 86 (123)
Q Consensus 67 ~~g~~tv~d~a~~IH~d~~~ 86 (123)
+.| .|..|+|..+++-+.+
T Consensus 41 kpG-~t~~el~~~~~~~i~~ 59 (389)
T TIGR00495 41 SPG-AKVVDICEKGDAFIME 59 (389)
T ss_pred CCC-CCHHHHHHHHHHHHHH
Confidence 355 8999999887776665
No 383
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=34.82 E-value=89 Score=24.65 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=29.3
Q ss_pred eCCCCCHHHHHHHhHHHHHhhcc-ee--EEecC--CCCCCCceeCCCceecCCCeEEE
Q psy2927 67 HTDRRSIEDFCNKLHRTIAKEFK-YA--LVWGS--SVKHQPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 67 ~~g~~tv~d~a~~IH~d~~~~f~-~A--~vwg~--s~k~~~q~vg~~~~l~d~Dvv~i 119 (123)
+.| .|..|+|..+...+.+.=. .| ..-+. .+-|-.-.-|-+-.|++||+|.|
T Consensus 23 ~pG-~te~ei~~~~~~~i~~~G~~~afp~~is~n~~~~H~~p~~~d~~~l~~GDvV~i 79 (291)
T cd01088 23 KPG-MTLLEIAEFVENRIRELGAGPAFPVNLSINECAAHYTPNAGDDTVLKEGDVVKL 79 (291)
T ss_pred cCC-CcHHHHHHHHHHHHHHcCCCCCCCceeccCCEeeCCCCCCCCCcccCCCCEEEE
Confidence 455 8999999999887765321 11 10011 01111111234568999999987
No 384
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=34.70 E-value=1.1e+02 Score=26.46 Aligned_cols=53 Identities=17% Similarity=0.386 Sum_probs=30.4
Q ss_pred EeCCCCCHHHHHHHhHHHHHhhcceeE---Ee------c--CCCCCCCceeCCCceecCCCeEEE
Q psy2927 66 LHTDRRSIEDFCNKLHRTIAKEFKYAL---VW------G--SSVKHQPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 66 l~~g~~tv~d~a~~IH~d~~~~f~~A~---vw------g--~s~k~~~q~vg~~~~l~d~Dvv~i 119 (123)
++.| .|..|+|..|...+.+.+...- =| + ..+-|.--.-|-+.+|++||+|.|
T Consensus 179 IkpG-~se~EIa~~ie~~ir~~~~~~G~~~g~aFPt~vS~N~~aaH~tP~~gd~~vLk~GDvVkI 242 (470)
T PTZ00053 179 IKPG-VKLIDICERIESKSRELIEADGLKCGWAFPTGCSLNHCAAHYTPNTGDKTVLTYDDVCKL 242 (470)
T ss_pred hhCC-CCHHHHHHHHHHHHHHHHHhcCCcccCCCCceeecCccccCCCCCCCCCcEecCCCeEEE
Confidence 5566 9999999988776554321100 01 1 112221111344578999999998
No 385
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=34.15 E-value=1.3e+02 Score=22.53 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=32.1
Q ss_pred EeCCCCCHHHHHHHhHHHHHhh-----cceeEEecCCCCCCCceeCCCceecCCCeEEE
Q psy2927 66 LHTDRRSIEDFCNKLHRTIAKE-----FKYALVWGSSVKHQPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 66 l~~g~~tv~d~a~~IH~d~~~~-----f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i 119 (123)
++.| .|-.|++..+++.+.+. |.....-|.++. -+.-...+-+|++||+|.|
T Consensus 22 i~pG-~tE~ei~~~~~~~~~~~G~~~~~~~~v~~g~~~~-~~H~~~~~~~l~~Gd~v~v 78 (243)
T cd01087 22 SRPG-MSEYELEAEFEYEFRSRGARLAYSYIVAAGSNAA-ILHYVHNDQPLKDGDLVLI 78 (243)
T ss_pred CcCC-CcHHHHHHHHHHHHHHcCCCcCCCCeEEECCCcc-ccCCCcCCCcCCCCCEEEE
Confidence 4455 89999999999887642 222222243222 1222334778999999987
No 386
>PRK12896 methionine aminopeptidase; Reviewed
Probab=33.32 E-value=1.1e+02 Score=23.14 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=29.9
Q ss_pred EeCCCCCHHHHHHHhHHHHHhhc-c----------eeEEecCCCCCCCceeCCCceecCCCeEEEE
Q psy2927 66 LHTDRRSIEDFCNKLHRTIAKEF-K----------YALVWGSSVKHQPQKVGKEHVLNDEDVVQIV 120 (123)
Q Consensus 66 l~~g~~tv~d~a~~IH~d~~~~f-~----------~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~ 120 (123)
++.| .|-.|++..++..+.+.= . .....|.+.. .+...-.+.+|++||+|.+-
T Consensus 37 i~pG-~te~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~-~~h~~p~~~~l~~Gd~v~iD 100 (255)
T PRK12896 37 VEPG-MTTKELDRIAEKRLEEHGAIPSPEGYYGFPGSTCISVNEE-VAHGIPGPRVIKDGDLVNID 100 (255)
T ss_pred ccCC-CCHHHHHHHHHHHHHHCCCEeCcccCCCCCcceEecCCCe-eEecCCCCccCCCCCEEEEE
Confidence 4455 788999999988876521 1 1111111100 01112245789999999873
No 387
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=32.99 E-value=1.4e+02 Score=24.88 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=36.5
Q ss_pred eEEEeecCCcChHHHHHHHHHhhccceE--Ee-CCCCC--------------CCCCcccEEEeCCCCCHHHHH
Q psy2927 22 CVPLSAHHKWNFDDLLEKMWEYLKLTRI--YT-KPKGQ--------------LPDYQSPVVLHTDRRSIEDFC 77 (123)
Q Consensus 22 ~v~ISA~~~~gld~L~e~i~~~L~~irv--yt-k~~g~--------------~pd~~~~~~l~~g~~tv~d~a 77 (123)
+-.|++.+|-++.+.+..+.+.-+.+++ |+ .-+|. ...+ +.++|-+||.+.+||.
T Consensus 138 I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~-Dviii~RGGGS~eDL~ 209 (438)
T PRK00286 138 IGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGE-DVLIVARGGGSLEDLW 209 (438)
T ss_pred EEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCC-CEEEEecCCCCHHHhh
Confidence 4449999999999999999888775444 44 11111 0001 3778888878999885
No 388
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=32.84 E-value=53 Score=23.45 Aligned_cols=49 Identities=18% Similarity=0.379 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCH----HHHHHHhHHHHH
Q psy2927 33 FDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSI----EDFCNKLHRTIA 85 (123)
Q Consensus 33 ld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv----~d~a~~IH~d~~ 85 (123)
-++|++++++.|+-.. -.+.+=+.|. |-+...|.-|+ .|+|..+|++-.
T Consensus 2 Y~~lL~R~~~~l~~~~-~~~~R~~mP~---~~v~~eG~kTvi~Nf~~Ia~~L~R~~~ 54 (133)
T TIGR00311 2 YEKLLERAIDQLPDEV-FETKRFEVPK---AYIVIEGNRTIIQNFREVAKALNRDEQ 54 (133)
T ss_pred HHHHHHHHHHHCcccc-CCCccccCCC---ceEEEEcCcEEEecHHHHHHHHCCCHH
Confidence 4789999999987422 2222222343 66666662343 788999988543
No 389
>PRK07281 methionine aminopeptidase; Reviewed
Probab=32.21 E-value=1.3e+02 Score=23.95 Aligned_cols=52 Identities=13% Similarity=0.302 Sum_probs=30.5
Q ss_pred EeCCCCCHHHHHHHhHHHHHhh---------------cceeEEecCCCCCCCceeCCCceecCCCeEEE
Q psy2927 66 LHTDRRSIEDFCNKLHRTIAKE---------------FKYALVWGSSVKHQPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 66 l~~g~~tv~d~a~~IH~d~~~~---------------f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i 119 (123)
++.| .|-.|++..++..+.+. |-....-|.++- .+--.--+..|++||+|.|
T Consensus 31 i~pG-~te~ei~~~~~~~~~~~g~~~~~~G~~~~~~~f~~~v~~G~n~~-~~H~~p~~~~l~~Gd~v~i 97 (286)
T PRK07281 31 IKPG-VDMWEVEEYVRRRCKEENVLPLQIGVDGAMMDYPYATCCGLNDE-VAHAFPRHYILKEGDLLKV 97 (286)
T ss_pred CcCC-CcHHHHHHHHHHHHHHcCCcccccCCCCcccCCCcceEEecccc-ccCCCCCCcCcCCCCEEEE
Confidence 3455 78888888888777643 222222343221 1112234678999999987
No 390
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=31.87 E-value=1.7e+02 Score=21.01 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=32.1
Q ss_pred EeCCCCCHHHHHHHhHHHHHhh----cceeE-Ee-cCCCCCCCceeCCCceecCCCeEEEE
Q psy2927 66 LHTDRRSIEDFCNKLHRTIAKE----FKYAL-VW-GSSVKHQPQKVGKEHVLNDEDVVQIV 120 (123)
Q Consensus 66 l~~g~~tv~d~a~~IH~d~~~~----f~~A~-vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~ 120 (123)
++.| .|-.|++..++..+.+. +-|.. |. |..+. .+.....+-++++||+|.|-
T Consensus 22 ~~~G-~te~ei~~~~~~~~~~~g~~~~~~~~~v~~g~~~~-~~h~~~~~~~l~~gd~v~id 80 (208)
T cd01092 22 IKPG-MTEREVAAELEYFMRKLGAEGPSFDTIVASGPNSA-LPHGVPSDRKIEEGDLVLID 80 (208)
T ss_pred CcCC-CCHHHHHHHHHHHHHHcCCCCCCCCcEEEECcccc-ccCCCCCCcCcCCCCEEEEE
Confidence 3555 89999999998887752 22222 22 22221 22233446679999999884
No 391
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=31.55 E-value=99 Score=18.93 Aligned_cols=46 Identities=20% Similarity=0.183 Sum_probs=32.5
Q ss_pred cccEEEe-CCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 61 QSPVVLH-TDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 61 ~~~~~l~-~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
...+.++ .+ .|-.+|..+|.+.|... .+.....|.=+|||.|.|.+
T Consensus 11 ~~~~~~~~~~-~s~~~L~~~i~~~~~~~--------------~~~~~l~y~D~e~d~v~l~s 57 (81)
T cd05992 11 IRRFVVVSRS-ISFEDLRSKIAEKFGLD--------------AVSFKLKYPDEDGDLVTISS 57 (81)
T ss_pred CEEEEEecCC-CCHHHHHHHHHHHhCCC--------------CCcEEEEeeCCCCCEEEeCC
Confidence 4467777 76 89999998887766421 14456667778888888754
No 392
>PLN02908 threonyl-tRNA synthetase
Probab=30.48 E-value=74 Score=28.43 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=38.4
Q ss_pred EeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 66 LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 66 l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
.+.+++|+.|+|..|...+.+...-|.| .|+-..+++.|+...-|++++
T Consensus 64 ~~~~~tt~~~ia~~i~~~~~~~~v~a~V-------ng~l~dL~~~l~~d~~le~l~ 112 (686)
T PLN02908 64 GKKWVTTPMDIAKEISKGLANSALIAQV-------DGVLWDMTRPLEGDCKLKLFK 112 (686)
T ss_pred ecCCCCCHHHHHHHhCccchhhcEEEEE-------CCEEeecCccccCCCeeEEec
Confidence 3333489999999999988888877776 456788899998777788764
No 393
>KOG1424|consensus
Probab=29.65 E-value=41 Score=29.64 Aligned_cols=29 Identities=17% Similarity=-0.016 Sum_probs=20.3
Q ss_pred CcccCCCCCHhhHHHHh-----cCCCeEEEeecC
Q psy2927 1 MQKVSDQISIEELDIIY-----KIPHCVPLSAHH 29 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l~-----~~~~~v~ISA~~ 29 (123)
++||+||+.++....-+ ..-.+++-||..
T Consensus 211 LvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 211 LVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALA 244 (562)
T ss_pred EEehhhcCCHHHHHHHHHHHHhcCceEEEEeccc
Confidence 47999999888654332 222478889887
No 394
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=29.30 E-value=29 Score=28.26 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=12.9
Q ss_pred CcccCCCCCHhhHHHH
Q psy2927 1 MQKVSDQISIEELDII 16 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l 16 (123)
++||+|+++.++++.+
T Consensus 179 vlnK~Dl~~~~~l~~~ 194 (341)
T TIGR02475 179 ILNKADLLDAAGLARV 194 (341)
T ss_pred EEeccccCCHHHHHHH
Confidence 5899999988776554
No 395
>PRK12897 methionine aminopeptidase; Reviewed
Probab=29.16 E-value=1.4e+02 Score=22.71 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=29.6
Q ss_pred eCCCCCHHHHHHHhHHHHHhh-----------cceeEEecCCCCCCCceeCCCceecCCCeEEE
Q psy2927 67 HTDRRSIEDFCNKLHRTIAKE-----------FKYALVWGSSVKHQPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 67 ~~g~~tv~d~a~~IH~d~~~~-----------f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i 119 (123)
+.| .|-.|++..++.-+.+. |-..+.-|.++. .+.-...+-+|++||+|.|
T Consensus 32 ~~G-~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~i~~g~n~~-~~H~~p~~~~l~~Gd~V~i 93 (248)
T PRK12897 32 KPG-ITTKEINTFVEAYLEKHGATSEQKGYNGYPYAICASVNDE-MCHAFPADVPLTEGDIVTI 93 (248)
T ss_pred CCC-CcHHHHHHHHHHHHHHcCCcccccccCCCCcceEeccCCE-eecCCCCCcccCCCCEEEE
Confidence 455 78889988888877642 111222232111 1122334668999999987
No 396
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=29.03 E-value=1.4e+02 Score=21.58 Aligned_cols=52 Identities=13% Similarity=0.226 Sum_probs=30.6
Q ss_pred eCCCCCHHHHHHHhHHH-HHh-h---cce-eEEe-cCCCCCCCceeCCCceecCCCeEEEE
Q psy2927 67 HTDRRSIEDFCNKLHRT-IAK-E---FKY-ALVW-GSSVKHQPQKVGKEHVLNDEDVVQIV 120 (123)
Q Consensus 67 ~~g~~tv~d~a~~IH~d-~~~-~---f~~-A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~ 120 (123)
+.| .|-.|++..++.. +.+ + +-| ..+| |....+..- .--+-.|++||+|.|-
T Consensus 22 ~~G-~te~ei~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~-~~~~~~l~~gd~v~id 80 (207)
T PF00557_consen 22 RPG-MTEYEIAAAIERAMLRRHGGEEPAFPPIVGSGPNTDLPHY-TPTDRRLQEGDIVIID 80 (207)
T ss_dssp STT-CBHHHHHHHHHHHHHHHTTTTEESSESEEEECCCCGETTT-BCCSSBESTTEEEEEE
T ss_pred cCC-CcHHHHHHHHHHHHHHHcCCCcccCCceEecCCcceecce-eccceeeecCCcceee
Confidence 345 8999999999988 332 2 111 2333 433221111 1137779999999883
No 397
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=28.71 E-value=64 Score=26.10 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=15.0
Q ss_pred CcccEEEeCC-CCCHHHHH
Q psy2927 60 YQSPVVLHTD-RRSIEDFC 77 (123)
Q Consensus 60 ~~~~~~l~~g-~~tv~d~a 77 (123)
..+|++|++| +.|++|..
T Consensus 151 ~~kPvLLKRg~~aTieEwL 169 (286)
T COG2876 151 QNKPVLLKRGLSATIEEWL 169 (286)
T ss_pred cCCCeEEecCccccHHHHH
Confidence 4669999999 78999874
No 398
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=28.58 E-value=2.2e+02 Score=22.81 Aligned_cols=55 Identities=13% Similarity=-0.009 Sum_probs=33.9
Q ss_pred CHhhHHHHhcCCCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCC-CCCHHHHHHHhH
Q psy2927 9 SIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTD-RRSIEDFCNKLH 81 (123)
Q Consensus 9 ~~e~l~~l~~~~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g-~~tv~d~a~~IH 81 (123)
++++++...++-+++.|-|..=.+.+- ++++-+ ..+|+.|++| ..|+.|+...+-
T Consensus 90 ~~~~~~~v~~~~DilQIgArn~rn~~L-L~a~g~-----------------t~kpV~lKrG~~~t~~e~~~aae 145 (264)
T PRK05198 90 EPEQAAPVAEVVDVLQIPAFLCRQTDL-LVAAAK-----------------TGKVVNIKKGQFLAPWDMKNVVD 145 (264)
T ss_pred CHHHHHHHHhhCcEEEECchhcchHHH-HHHHhc-----------------cCCeEEecCCCcCCHHHHHHHHH
Confidence 444555444556788888877666633 333322 3458999997 578888754443
No 399
>smart00363 S4 S4 RNA-binding domain.
Probab=28.56 E-value=64 Score=17.67 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=15.9
Q ss_pred CCcee-CCCceecCCCeEEEE
Q psy2927 101 QPQKV-GKEHVLNDEDVVQIV 120 (123)
Q Consensus 101 ~~q~v-g~~~~l~d~Dvv~i~ 120 (123)
.|+.+ -.++.+..||+|++.
T Consensus 31 ng~~~~~~~~~l~~gd~i~~~ 51 (60)
T smart00363 31 NGKKVTKPSYIVKPGDVISVR 51 (60)
T ss_pred CCEEecCCCeEeCCCCEEEEc
Confidence 55666 778899999999874
No 400
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=28.09 E-value=1.4e+02 Score=25.60 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=37.3
Q ss_pred EeecCCcChHHHHHHHHHhhccceE--Ee----------------CCCCC--CCCCcccEEEeCCCCCHHHHH
Q psy2927 25 LSAHHKWNFDDLLEKMWEYLKLTRI--YT----------------KPKGQ--LPDYQSPVVLHTDRRSIEDFC 77 (123)
Q Consensus 25 ISA~~~~gld~L~e~i~~~L~~irv--yt----------------k~~g~--~pd~~~~~~l~~g~~tv~d~a 77 (123)
|.+.+|-.+.+++..+.+.-+.+++ |+ ..-++ .+| .+++-+||.+++||-
T Consensus 141 ITS~tgAairDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~D---vlIVaRGGGSiEDLW 210 (440)
T COG1570 141 ITSPTGAALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVD---VLIVARGGGSIEDLW 210 (440)
T ss_pred EcCCchHHHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCC---EEEEecCcchHHHHh
Confidence 8889999999999999988886555 43 11111 244 888889888999996
No 401
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.04 E-value=2.6e+02 Score=22.06 Aligned_cols=49 Identities=18% Similarity=0.445 Sum_probs=25.6
Q ss_pred hHHHHhcCCCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCC-CCCHHHHHH
Q psy2927 12 ELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTD-RRSIEDFCN 78 (123)
Q Consensus 12 ~l~~l~~~~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g-~~tv~d~a~ 78 (123)
.++.+.++.+.+.|.|..=.|.+ |++++-+ ..+|++|++| .+|+.|+..
T Consensus 91 ~v~~~~e~vdilqIgs~~~~n~~-LL~~va~-----------------tgkPVilk~G~~~t~~e~~~ 140 (250)
T PRK13397 91 QLEEAYDYLDVIQVGARNMQNFE-FLKTLSH-----------------IDKPILFKRGLMATIEEYLG 140 (250)
T ss_pred HHHHHHhcCCEEEECcccccCHH-HHHHHHc-----------------cCCeEEEeCCCCCCHHHHHH
Confidence 33333334456666666655544 3333322 2347777776 567766643
No 402
>PLN03158 methionine aminopeptidase; Provisional
Probab=27.54 E-value=1.7e+02 Score=24.54 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=30.6
Q ss_pred EeCCCCCHHHHHHHhHHHHHhhccee-----------EEecCCCCCCCceeCCCceecCCCeEEEE
Q psy2927 66 LHTDRRSIEDFCNKLHRTIAKEFKYA-----------LVWGSSVKHQPQKVGKEHVLNDEDVVQIV 120 (123)
Q Consensus 66 l~~g~~tv~d~a~~IH~d~~~~f~~A-----------~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~ 120 (123)
++.| .|-.|++..+|..+.+.=-|. ..-|.+.- -..-..-+-+|++||+|.|-
T Consensus 164 irpG-vTe~EI~~~v~~~~~~~Ga~ps~l~y~~fp~svcts~N~~-i~Hgip~~r~L~~GDiV~iD 227 (396)
T PLN03158 164 IKPG-VTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEV-ICHGIPDARKLEDGDIVNVD 227 (396)
T ss_pred ccCC-CCHHHHHHHHHHHHHHcCCccccccccCCCceeeeccccc-ccCCCCCCccCCCCCEEEEE
Confidence 4566 899999999999876532221 11111100 00112245689999999873
No 403
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=27.43 E-value=94 Score=19.79 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.0
Q ss_pred eEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 22 CVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 22 ~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
.++||...=..++.|++.|-+.|.+
T Consensus 17 ~~~i~~~~~~sfd~lL~~lt~~l~l 41 (80)
T cd01617 17 RLLVNRRRFKSFDALLDDLTEKVQL 41 (80)
T ss_pred EEEEChhhhCCHHHHHHHHHHHhCC
Confidence 4778888778999999999999986
No 404
>PF10948 DUF2635: Protein of unknown function (DUF2635); InterPro: IPR024400 This family consists of uncharacterised proteins found in bacteria and bacteriophages. It includes protein Gp38 from Enterobacteria phage Mu.
Probab=26.90 E-value=33 Score=20.27 Aligned_cols=10 Identities=50% Similarity=0.797 Sum_probs=7.4
Q ss_pred ecCCCeEEEE
Q psy2927 111 LNDEDVVQIV 120 (123)
Q Consensus 111 l~d~Dvv~i~ 120 (123)
|.||||+..-
T Consensus 35 l~dGDV~~v~ 44 (47)
T PF10948_consen 35 LADGDVVEVT 44 (47)
T ss_pred hhcCCEEEec
Confidence 7788887654
No 405
>KOG1673|consensus
Probab=26.85 E-value=69 Score=24.28 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=30.8
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHH
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIED 75 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d 75 (123)
.-++.|+....|+..+..-+...| ++-||++|+. -|++|
T Consensus 162 sL~F~Sts~sINv~KIFK~vlAkl---------------FnL~~ti~~~-~~iGd 200 (205)
T KOG1673|consen 162 SLFFCSTSHSINVQKIFKIVLAKL---------------FNLPWTIPEI-LTIGD 200 (205)
T ss_pred cEEEeeccccccHHHHHHHHHHHH---------------hCCceecccc-cccCc
Confidence 467899999999999888777665 5668999987 67665
No 406
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=26.70 E-value=32 Score=20.40 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=21.9
Q ss_pred HHHHhhcceeEEecCCCCCCCceeCCCceecCCCe
Q psy2927 82 RTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDV 116 (123)
Q Consensus 82 ~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dv 116 (123)
..+++.+....+.|++ -|....||.-|..-+.++
T Consensus 8 ~~~A~~~~lp~~~gSD-AH~~~~vG~~~t~~~~~~ 41 (56)
T PF13263_consen 8 AELAEKYGLPFTGGSD-AHFLEEVGRGYTEFEGPI 41 (56)
T ss_dssp HHHHHHTT--EEEE---BSSGGGTTTTHHHH----
T ss_pred HHHHHHcCCCeEeEEc-ccChhhcCCEeeeccccc
Confidence 4677888999999965 589999999997665443
No 407
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=26.56 E-value=1.5e+02 Score=17.60 Aligned_cols=54 Identities=13% Similarity=0.246 Sum_probs=31.0
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHH---hhcceeEEe-cCCCCCCCceeCCCceecCCCeEEEE
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIA---KEFKYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIV 120 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~---~~f~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~ 120 (123)
.++-++.. .|+.++=.+|..... +.++ +.+ |+... ..+. =.+|-+.||+.|.++
T Consensus 12 ~~i~v~~~-~tv~~lK~~i~~~~gi~~~~q~--L~~~g~~l~-d~~~-L~~~~i~~g~~l~v~ 69 (71)
T cd01812 12 HDLSISSQ-ATFGDLKKMLAPVTGVEPRDQK--LIFKGKERD-DAET-LDMSGVKDGSKVMLL 69 (71)
T ss_pred EEEEECCC-CcHHHHHHHHHHhhCCChHHeE--EeeCCcccC-ccCc-HHHcCCCCCCEEEEe
Confidence 35667776 899999888875531 1111 122 22211 2222 256778999998875
No 408
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.86 E-value=84 Score=18.51 Aligned_cols=49 Identities=8% Similarity=0.175 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHH
Q psy2927 34 DDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIA 85 (123)
Q Consensus 34 d~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~ 85 (123)
..+...+++.|..+.+..-..|.. +..-.++++. .....+...+|+.|-
T Consensus 15 ~~v~~~i~~~L~~i~i~~i~~~~s-~~~is~~V~~--~~~~~a~~~Lh~~f~ 63 (64)
T cd04917 15 AGVEKRIFDALEDINVRMICYGAS-NHNLCFLVKE--EDKDEVVQRLHSRLF 63 (64)
T ss_pred cCHHHHHHHHHHhCCeEEEEEecC-ccEEEEEEeH--HHHHHHHHHHHHHHh
Confidence 346677777776655544333321 1334567877 478889999999874
No 409
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=25.68 E-value=1.1e+02 Score=20.77 Aligned_cols=20 Identities=10% Similarity=0.370 Sum_probs=13.0
Q ss_pred EEEeCCCCCHHHHHHHhHHHH
Q psy2927 64 VVLHTDRRSIEDFCNKLHRTI 84 (123)
Q Consensus 64 ~~l~~g~~tv~d~a~~IH~d~ 84 (123)
+++|.+ .|+.++...|++.+
T Consensus 37 fLvp~~-~tv~qf~~~ir~rl 56 (104)
T PF02991_consen 37 FLVPKD-LTVGQFVYIIRKRL 56 (104)
T ss_dssp EEEETT-SBHHHHHHHHHHHT
T ss_pred EEEcCC-CchhhHHHHhhhhh
Confidence 566665 66666666666665
No 410
>PRK15173 peptidase; Provisional
Probab=25.37 E-value=1.8e+02 Score=23.31 Aligned_cols=51 Identities=8% Similarity=0.242 Sum_probs=32.7
Q ss_pred EeCCCCCHHHHHHHhHHHHHhh----cce--eEEecCCCCCCCceeCCCceecCCCeEEE
Q psy2927 66 LHTDRRSIEDFCNKLHRTIAKE----FKY--ALVWGSSVKHQPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 66 l~~g~~tv~d~a~~IH~d~~~~----f~~--A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i 119 (123)
++.| .|-.|++..++..+.+. |.+ -+.-|.+ +.+.....+..+++||+|.|
T Consensus 122 i~~G-~tE~el~a~~~~~~~~~g~~~~~~~~~i~~G~~--~~~h~~~~~~~l~~Gd~V~i 178 (323)
T PRK15173 122 IRVG-CTSAELTAAYKAAVMSKSETHFSRFHLISVGAD--FSPKLIPSNTKACSGDLIKF 178 (323)
T ss_pred ccCC-CCHHHHHHHHHHHHHHcCCCCCCCCcEEEECCC--CccCCCCCCCccCCCCEEEE
Confidence 4565 89999998988777652 221 1222432 23334556778999999987
No 411
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=25.12 E-value=39 Score=24.01 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=9.2
Q ss_pred CcccCCCCCHhhH
Q psy2927 1 MQKVSDQISIEEL 13 (123)
Q Consensus 1 V~NKiD~~~~e~l 13 (123)
|+||+|++.+++.
T Consensus 135 v~nK~D~~~~~~~ 147 (179)
T TIGR03598 135 VLTKADKLKKSEL 147 (179)
T ss_pred EEECcccCCHHHH
Confidence 5799998765543
No 412
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=25.09 E-value=2.6e+02 Score=19.87 Aligned_cols=31 Identities=13% Similarity=-0.054 Sum_probs=20.6
Q ss_pred CHhh-HHHH-hcCCCeEEEeecCCcChHHHHHH
Q psy2927 9 SIEE-LDII-YKIPHCVPLSAHHKWNFDDLLEK 39 (123)
Q Consensus 9 ~~e~-l~~l-~~~~~~v~ISA~~~~gld~L~e~ 39 (123)
++++ ++.. ...++.|.+|+..+..+..+.+.
T Consensus 40 ~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~ 72 (134)
T TIGR01501 40 PQEEFIKAAIETKADAILVSSLYGHGEIDCKGL 72 (134)
T ss_pred CHHHHHHHHHHcCCCEEEEecccccCHHHHHHH
Confidence 3344 3433 34568999999999887665553
No 413
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=25.01 E-value=1.6e+02 Score=17.40 Aligned_cols=58 Identities=16% Similarity=0.277 Sum_probs=33.2
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhc-ceeEEe-cCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEF-KYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f-~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
-++-++.. +||.++=.+|+....-.. ..=++| |+-- ...+-=.+|-+.+|++|.++.+
T Consensus 8 ~~~~v~~~-~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L--~d~~tL~~~~i~~~~~I~l~~k 67 (69)
T PF00240_consen 8 FTLEVDPD-DTVADLKQKIAEETGIPPEQQRLIYNGKEL--DDDKTLSDYGIKDGSTIHLVIK 67 (69)
T ss_dssp EEEEEETT-SBHHHHHHHHHHHHTSTGGGEEEEETTEEE--STTSBTGGGTTSTTEEEEEEES
T ss_pred EEEEECCC-CCHHHhhhhcccccccccccceeeeeeecc--cCcCcHHHcCCCCCCEEEEEEe
Confidence 35667776 888888888877664211 111222 2211 1122224677899999988754
No 414
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=24.67 E-value=1.5e+02 Score=16.99 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhcc--ceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHH
Q psy2927 34 DDLLEKMWEYLKL--TRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIA 85 (123)
Q Consensus 34 d~L~e~i~~~L~~--irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~ 85 (123)
..+..++++.|.. +++..-..+. +...-.+++++. ...++...+|+.|-
T Consensus 15 ~~~~~~i~~~l~~~~I~v~~i~~~~-s~~~is~~v~~~--~~~~~~~~lh~~~~ 65 (66)
T cd04922 15 PGVAATFFSALAKANVNIRAIAQGS-SERNISAVIDED--DATKALRAVHERFF 65 (66)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEecC-cccEEEEEEeHH--HHHHHHHHHHHHHh
Confidence 4566777777754 3343222222 224557888884 67888999999874
No 415
>KOG1144|consensus
Probab=24.59 E-value=62 Score=30.18 Aligned_cols=22 Identities=32% Similarity=0.241 Sum_probs=18.7
Q ss_pred eEEEeecCCcChHHHHHHHHHh
Q psy2927 22 CVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 22 ~v~ISA~~~~gld~L~e~i~~~ 43 (123)
.||.||.+|+|+.+|+-.|.+.
T Consensus 664 iVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 664 IVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred eeecccccCCCcHHHHHHHHHH
Confidence 6899999999999988766654
No 416
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.26 E-value=1e+02 Score=18.44 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=28.7
Q ss_pred HHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHH
Q psy2927 35 DLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIA 85 (123)
Q Consensus 35 ~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~ 85 (123)
.+...+++.|....+..-..|.. +..-.++++. ....++.+.+|..|-
T Consensus 15 gv~~~~~~~L~~~~i~~i~~~~s-~~~is~vv~~--~d~~~av~~LH~~f~ 62 (63)
T cd04920 15 HKLGPALEVFGKKPVHLVSQAAN-DLNLTFVVDE--DQADGLCARLHFQLI 62 (63)
T ss_pred cHHHHHHHHHhcCCceEEEEeCC-CCeEEEEEeH--HHHHHHHHHHHHHHh
Confidence 35666666665433333222221 1344677877 478899999999874
No 417
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=24.09 E-value=65 Score=17.97 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=15.6
Q ss_pred CCCCceeC-CCceecCCCeE
Q psy2927 99 KHQPQKVG-KEHVLNDEDVV 117 (123)
Q Consensus 99 k~~~q~vg-~~~~l~d~Dvv 117 (123)
+-.|+.+- .++.+..||+|
T Consensus 29 ~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 29 KVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp EETTEEESSTTSBESTTEEE
T ss_pred EECCEEEcCCCCCCCCcCCC
Confidence 45777887 89999999986
No 418
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=23.91 E-value=1.3e+02 Score=19.92 Aligned_cols=28 Identities=14% Similarity=0.474 Sum_probs=19.9
Q ss_pred cceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHH
Q psy2927 46 LTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNK 79 (123)
Q Consensus 46 ~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~ 79 (123)
.++||.. .| ..+.+.+... .|+.|+|..
T Consensus 4 vvkv~~~-Dg----~sK~l~V~~~-~Ta~dV~~~ 31 (85)
T cd01787 4 VVKVYSE-DG----ASKSLEVDER-MTARDVCQL 31 (85)
T ss_pred EEEEEec-CC----CeeEEEEcCC-CcHHHHHHH
Confidence 3577762 23 4568888886 999999854
No 419
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=23.37 E-value=2.6e+02 Score=23.56 Aligned_cols=57 Identities=11% Similarity=0.138 Sum_probs=37.2
Q ss_pred eEEEeecCCcChHHHHHHHHHhhccceE--Ee----------------CCCCCCCCCcccEEEeCCCCCHHHHHHH
Q psy2927 22 CVPLSAHHKWNFDDLLEKMWEYLKLTRI--YT----------------KPKGQLPDYQSPVVLHTDRRSIEDFCNK 79 (123)
Q Consensus 22 ~v~ISA~~~~gld~L~e~i~~~L~~irv--yt----------------k~~g~~pd~~~~~~l~~g~~tv~d~a~~ 79 (123)
+-.|++.+|-++.+.+..+.+.-+...+ |+ ..-...+++ +.++|-+||.+.+||..-
T Consensus 132 i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~-dviii~RGGGs~eDL~~F 206 (432)
T TIGR00237 132 VGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNEC-DVLIVGRGGGSLEDLWSF 206 (432)
T ss_pred EEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCC-CEEEEecCCCCHHHhhhc
Confidence 3449999999999999999887665444 44 111111222 277777887888888633
No 420
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=23.24 E-value=2.2e+02 Score=24.26 Aligned_cols=62 Identities=13% Similarity=0.264 Sum_probs=45.1
Q ss_pred cCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcce
Q psy2927 28 HHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKY 90 (123)
Q Consensus 28 ~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~ 90 (123)
....|+.+-.....+.-++|.+....-...|. +..++|--|.-|..+||..||.-......|
T Consensus 97 VDR~~Fs~~vT~~l~~hpli~vireEvt~iP~-dg~~vIATGPLTs~~La~~i~~ltG~d~l~ 158 (439)
T COG1206 97 VDRDGFSQAVTEKLENHPLIEVIREEVTEIPP-DGITVIATGPLTSDALAEKIKELTGEDYLY 158 (439)
T ss_pred ecHhHHHHHHHHHHhcCCCEEEEccccccCCC-CCcEEEecCCCCCHHHHHHHHHhhCCceEE
Confidence 33456666555566667888887776666553 578888888779999999999888776544
No 421
>PTZ00233 variable surface protein Vir18; Provisional
Probab=23.08 E-value=41 Score=29.37 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=29.4
Q ss_pred CCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCC
Q psy2927 20 PHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQL 57 (123)
Q Consensus 20 ~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~ 57 (123)
+++|-.||- .|+--|+-.+|++-+|+||.||+..+.
T Consensus 433 ~~iIktSaP--mGIvLLLGLLFKyTPLWRvLTKknRKk 468 (509)
T PTZ00233 433 KNIIKTSMP--IGIALLLGLLFKYTPLWRVLTKKNRKK 468 (509)
T ss_pred cceeecccc--hhHHHHHHHhhccchhHHhhhhccccc
Confidence 456767764 678889999999999999999886653
No 422
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.03 E-value=1.2e+02 Score=17.57 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=29.0
Q ss_pred HHHHHHHHhhcc--ceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHH
Q psy2927 35 DLLEKMWEYLKL--TRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIA 85 (123)
Q Consensus 35 ~L~e~i~~~L~~--irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~ 85 (123)
.+...+++.|.. +++..-..+. ++..-.+++++. ...++...+|+.|-
T Consensus 16 ~~~~~if~~L~~~~I~v~~i~q~~-s~~~isf~v~~~--~~~~a~~~lh~~~~ 65 (66)
T cd04919 16 GIAGRMFTTLADHRINIEMISQGA-SEINISCVIDEK--DAVKALNIIHTNLL 65 (66)
T ss_pred CHHHHHHHHHHHCCCCEEEEEecC-ccceEEEEEeHH--HHHHHHHHHHHHHh
Confidence 455667766644 2332222222 224557788884 67788999999875
No 423
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=22.81 E-value=75 Score=24.03 Aligned_cols=56 Identities=14% Similarity=0.302 Sum_probs=39.8
Q ss_pred cEEE--eCCCCC--HHHHHHHhHHHHHhhcceeEEecCCCCCCC-cee--CCCceecCCCeEEE
Q psy2927 63 PVVL--HTDRRS--IEDFCNKLHRTIAKEFKYALVWGSSVKHQP-QKV--GKEHVLNDEDVVQI 119 (123)
Q Consensus 63 ~~~l--~~g~~t--v~d~a~~IH~d~~~~f~~A~vwg~s~k~~~-q~v--g~~~~l~d~Dvv~i 119 (123)
|+++ =+| |- ..||+.+||.+++=.|..+-=||.+...++ .++ -+++.+++.||+-+
T Consensus 37 ~~vv~iLkG-s~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiV 99 (178)
T COG0634 37 PLVVGVLKG-SFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIV 99 (178)
T ss_pred eEEEEEccc-chhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEEE
Confidence 4444 466 43 489999999999999999988875444344 333 34688888988765
No 424
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=22.53 E-value=2.8e+02 Score=19.46 Aligned_cols=58 Identities=22% Similarity=0.459 Sum_probs=36.7
Q ss_pred EeecCCcChHHHHHHHHHhhccceEEeC-CCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhccee
Q psy2927 25 LSAHHKWNFDDLLEKMWEYLKLTRIYTK-PKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYA 91 (123)
Q Consensus 25 ISA~~~~gld~L~e~i~~~L~~irvytk-~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A 91 (123)
++..+..-+.+|++.+.+ ++.-.|-|= ..| -+++... .+..+++.+|++-|.+.|-+.
T Consensus 13 VGG~nki~MaeLr~~l~~-~Gf~~V~Tyi~SG-------Nvvf~~~-~~~~~l~~~ie~~l~~~fG~~ 71 (137)
T PF08002_consen 13 VGGKNKIKMAELREALED-LGFTNVRTYIQSG-------NVVFESD-RDPAELAAKIEKALEERFGFD 71 (137)
T ss_dssp BTTBS---HHHHHHHHHH-CT-EEEEEETTTT-------EEEEEES-S-HHHHHHHHHHHHHHH-TT-
T ss_pred cCCCCcccHHHHHHHHHH-cCCCCceEEEeeC-------CEEEecC-CChHHHHHHHHHHHHHhcCCC
Confidence 455555678899887755 577666552 234 3555554 799999999999999999865
No 425
>PRK07560 elongation factor EF-2; Reviewed
Probab=22.51 E-value=71 Score=28.70 Aligned_cols=14 Identities=21% Similarity=0.199 Sum_probs=10.4
Q ss_pred CeEEEeecCCcChH
Q psy2927 21 HCVPLSAHHKWNFD 34 (123)
Q Consensus 21 ~~v~ISA~~~~gld 34 (123)
++++.||..++++.
T Consensus 198 ~v~~~sa~~~~~~~ 211 (731)
T PRK07560 198 TVAFGSALYNWAIS 211 (731)
T ss_pred cEeeeeccccccee
Confidence 35677998887775
No 426
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=22.43 E-value=2.6e+02 Score=19.97 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=13.6
Q ss_pred CCCceecCCCeEEEEec
Q psy2927 106 GKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 106 g~~~~l~d~Dvv~i~~~ 122 (123)
..|..|++||+|.+-++
T Consensus 147 ~~n~~L~~gD~I~Vp~~ 163 (165)
T TIGR03027 147 TANVELKPGDVLIIPES 163 (165)
T ss_pred cCCceeCCCCEEEEecc
Confidence 36888999999988543
No 427
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=22.32 E-value=1.9e+02 Score=17.29 Aligned_cols=57 Identities=11% Similarity=0.243 Sum_probs=34.1
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHh-hcceeEEec-CCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAK-EFKYALVWG-SSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~-~f~~A~vwg-~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
.+-+... .||.++=.+|++...- --...+.|+ +... ....+ .+|-+++|++|.++.+
T Consensus 14 ~~~v~~~-~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~-d~~~L-~~~~i~~~~~i~l~~~ 72 (76)
T cd01803 14 TLEVEPS-DTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTL-SDYNIQKESTLHLVLR 72 (76)
T ss_pred EEEECCc-CcHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCcH-HHcCCCCCCEEEEEEE
Confidence 4666665 8999999899876521 112233332 2111 22223 5588999999998754
No 428
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=22.19 E-value=88 Score=23.66 Aligned_cols=49 Identities=18% Similarity=0.411 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCH----HHHHHHhHHHHH
Q psy2927 33 FDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSI----EDFCNKLHRTIA 85 (123)
Q Consensus 33 ld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv----~d~a~~IH~d~~ 85 (123)
-++|++++++.|+-. .-+..+=..|. |-+...|.-|+ .|+|..+||+-.
T Consensus 3 Y~~lL~r~~~~l~~~-~~~~~R~~~p~---~~v~~eG~kT~i~N~~~i~~~l~R~~~ 55 (201)
T PRK12336 3 YESLLDRAMEVLPEP-TKSGERFSIPE---PKIFIEGKTTILTNFGEIADALNRDPD 55 (201)
T ss_pred HHHHHHHHHHHCCcc-cCCccceecCC---ceEEEEcCcEEEecHHHHHHHHCCCHH
Confidence 478999999998652 11111112343 55666663343 788999987643
No 429
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=22.16 E-value=2e+02 Score=17.68 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=32.7
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHH---hhcceeEEe-cCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIA---KEFKYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~---~~f~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
++.++.+ .||.++=.+|+.... ++.+ +++ |+..+ ..+.+ .+|-+++|+.|.++.+
T Consensus 11 ~l~v~~~-~TV~~lK~~i~~~~gip~~~q~--L~~~G~~L~-d~~tL-~~~~i~~g~~l~v~~~ 69 (76)
T cd01800 11 NFTLQLS-DPVSVLKVKIHEETGMPAGKQK--LQYEGIFIK-DSNSL-AYYNLANGTIIHLQLK 69 (76)
T ss_pred EEEECCC-CcHHHHHHHHHHHHCCCHHHEE--EEECCEEcC-CCCcH-HHcCCCCCCEEEEEEe
Confidence 5666665 788888878776542 2221 222 22122 23444 3788999999988753
No 430
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=22.02 E-value=47 Score=22.04 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=16.1
Q ss_pred eeCCCceecCCCeEEEEe
Q psy2927 104 KVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 104 ~vg~~~~l~d~Dvv~i~~ 121 (123)
.+|..|.=+|||+|.+.+
T Consensus 39 ~~~vtYiDeD~D~ITlss 56 (82)
T cd06397 39 KVGVTYIDNDNDEITLSS 56 (82)
T ss_pred HeEEEEEcCCCCEEEecc
Confidence 489999999999999975
No 431
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=21.51 E-value=2.2e+02 Score=17.76 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=34.8
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHH-hhcceeEEe-cCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIA-KEFKYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~-~~f~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
.++-++.. +||.++=.+|++... .-.+.-.++ |+..+ .. . =.+|-++||+.|.++.
T Consensus 14 ~~l~v~~~-~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~-d~-~-L~~~gi~~~~~i~l~~ 71 (78)
T cd01804 14 FDLSVPPD-ETVEGLKKRISQRLKVPKERLALLHRETRLS-SG-K-LQDLGLGDGSKLTLVP 71 (78)
T ss_pred EEEEECCc-CHHHHHHHHHHHHhCCChHHEEEEECCcCCC-CC-c-HHHcCCCCCCEEEEEe
Confidence 36777886 899999989987751 111112222 43322 22 2 4578889999998865
No 432
>CHL00009 petN cytochrome b6/f complex subunit VIII
Probab=21.49 E-value=53 Score=17.57 Aligned_cols=7 Identities=57% Similarity=1.175 Sum_probs=4.9
Q ss_pred EEecCCC
Q psy2927 92 LVWGSSV 98 (123)
Q Consensus 92 ~vwg~s~ 98 (123)
.|||+|.
T Consensus 22 VVWGR~G 28 (29)
T CHL00009 22 VVWGRSG 28 (29)
T ss_pred EEEeccC
Confidence 5788763
No 433
>PRK14747 cytochrome b6-f complex subunit PetN; Provisional
Probab=21.37 E-value=54 Score=17.53 Aligned_cols=7 Identities=43% Similarity=1.113 Sum_probs=4.9
Q ss_pred EEecCCC
Q psy2927 92 LVWGSSV 98 (123)
Q Consensus 92 ~vwg~s~ 98 (123)
.|||+|.
T Consensus 22 VVWGRnG 28 (29)
T PRK14747 22 VVWGRNG 28 (29)
T ss_pred EEEecCC
Confidence 5798763
No 434
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=21.34 E-value=1.3e+02 Score=18.01 Aligned_cols=28 Identities=25% Similarity=0.544 Sum_probs=21.2
Q ss_pred EEeecCCcChHHHHHHHHHhhccc----eEEe
Q psy2927 24 PLSAHHKWNFDDLLEKMWEYLKLT----RIYT 51 (123)
Q Consensus 24 ~ISA~~~~gld~L~e~i~~~L~~i----rvyt 51 (123)
.||-..=..++.|++.|-+.+.+. ++||
T Consensus 2 ~i~~r~~~s~e~lL~~it~~v~l~~gVr~lyt 33 (60)
T PF03607_consen 2 VINPRRFRSFEQLLDEITEKVQLPSGVRKLYT 33 (60)
T ss_dssp EESTTTHSSHHHHHHHHHHSSSSTTS-SEEEE
T ss_pred eEChhhhcCHHHHHHHHHhhcCCCcccceEEC
Confidence 456666678999999999988763 5666
No 435
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=21.21 E-value=2e+02 Score=17.34 Aligned_cols=56 Identities=16% Similarity=0.376 Sum_probs=32.4
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHh---hcceeEEe-cCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAK---EFKYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~---~f~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
.+-+... .||.++=.+|+....- --+.-+++ |+-.. ..+.+ .+|-+.+|+.|.++-
T Consensus 14 ~l~v~~~-~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~-d~~~L-~~~~i~~~~~i~~~~ 73 (77)
T cd01805 14 PIEVDPD-DTVAELKEKIEEEKGCDYPPEQQKLIYSGKILK-DDTTL-EEYKIDEKDFVVVMV 73 (77)
T ss_pred EEEECCC-CcHHHHHHHHHHhhCCCCChhHeEEEECCEEcc-CCCCH-HHcCCCCCCEEEEEE
Confidence 5666675 8999998888876531 11222222 22111 22222 457889999887753
No 436
>PRK14132 riboflavin kinase; Provisional
Probab=21.13 E-value=63 Score=23.02 Aligned_cols=14 Identities=57% Similarity=0.579 Sum_probs=11.0
Q ss_pred CCceecCCCeEEEE
Q psy2927 107 KEHVLNDEDVVQIV 120 (123)
Q Consensus 107 ~~~~l~d~Dvv~i~ 120 (123)
+.--|+|||.|+|.
T Consensus 112 ~~L~LkDGD~V~I~ 125 (126)
T PRK14132 112 KFLNLKDGDVVKIV 125 (126)
T ss_pred hhcCCCCCCEEEEE
Confidence 44569999999985
No 437
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=20.81 E-value=56 Score=20.53 Aligned_cols=13 Identities=38% Similarity=0.534 Sum_probs=7.4
Q ss_pred CCceecCCCeEEE
Q psy2927 107 KEHVLNDEDVVQI 119 (123)
Q Consensus 107 ~~~~l~d~Dvv~i 119 (123)
+...|.+||+|+|
T Consensus 45 rg~Kl~~GD~V~~ 57 (65)
T PF13275_consen 45 RGKKLRPGDVVEI 57 (65)
T ss_dssp SS----SSEEEEE
T ss_pred cCCcCCCCCEEEE
Confidence 4556999999987
No 438
>KOG3798|consensus
Probab=20.75 E-value=2.7e+02 Score=22.78 Aligned_cols=59 Identities=17% Similarity=0.366 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecC
Q psy2927 34 DDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGS 96 (123)
Q Consensus 34 d~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~ 96 (123)
+.+.+.|-+.++-...-.-+-|. ++--|-++..-..++++. +||+|+.-+-..|+=||.
T Consensus 243 ~~~F~~IgerfGpfdLAaiPiGa---YePrWfmK~~HInPeEav-~Ihkdv~arns~gIHWGT 301 (343)
T KOG3798|consen 243 DGEFKKIGERFGPFDLAAIPIGA---YEPRWFMKSQHINPEEAV-EIHKDVRAKNSIGIHWGT 301 (343)
T ss_pred cHHHHHHHHhcCCcceeeccccc---cCchhhcccccCCHHHHH-HHHHHHhhhcceeEeeee
Confidence 44667777766654333344454 333566766424555655 999999999999999995
No 439
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=20.63 E-value=75 Score=20.61 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=8.7
Q ss_pred ecCCCeEEEEec
Q psy2927 111 LNDEDVVQIVKK 122 (123)
Q Consensus 111 l~d~Dvv~i~~~ 122 (123)
|+|||.|.|.+.
T Consensus 44 i~~Gd~V~v~s~ 55 (110)
T PF01568_consen 44 IKDGDWVRVSSP 55 (110)
T ss_dssp --TTCEEEEEET
T ss_pred CcCCCEEEEEec
Confidence 899999999774
No 440
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=20.57 E-value=2.2e+02 Score=17.34 Aligned_cols=57 Identities=9% Similarity=0.255 Sum_probs=33.0
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHh-hcceeEEe-cCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAK-EFKYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~-~f~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
++-++.. .||.++=.+|.....= --...+++ |+-.. ..+.+ .+|-+++++.|.++.+
T Consensus 14 ~l~v~~~-~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~-d~~~L-~~~~i~~~~~l~l~~~ 72 (74)
T cd01807 14 SLQVSEK-ESVSTLKKLVSEHLNVPEEQQRLLFKGKALA-DDKRL-SDYSIGPNAKLNLVVR 72 (74)
T ss_pred EEEECCC-CcHHHHHHHHHHHHCCCHHHeEEEECCEECC-CCCCH-HHCCCCCCCEEEEEEc
Confidence 5667776 8999998888765421 01122333 22211 22223 4677888888887653
No 441
>PRK00007 elongation factor G; Reviewed
Probab=20.28 E-value=81 Score=28.12 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.1
Q ss_pred eEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 22 CVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 22 ~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
+++.||.++.|++.|++.|.+.|+.
T Consensus 257 v~~gSa~~~~Gv~~LLd~I~~~lPs 281 (693)
T PRK00007 257 VLCGSAFKNKGVQPLLDAVVDYLPS 281 (693)
T ss_pred EEecccccCcCHHHHHHHHHHHCCC
Confidence 4456999999999999999999975
No 442
>COG4048 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.22 E-value=2.2e+02 Score=20.04 Aligned_cols=43 Identities=16% Similarity=0.353 Sum_probs=26.1
Q ss_pred EeCCCCCHHHH---HHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecC
Q psy2927 66 LHTDRRSIEDF---CNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLND 113 (123)
Q Consensus 66 l~~g~~tv~d~---a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d 113 (123)
+..+ ||++|+ |-.+| +|..++--++ +|-..+|.|.-+.-++.|
T Consensus 3 Ised-s~~eel~piaiaVH-~Lv~rLP~ti---RS~~~pGlRlEkGeVvD~ 48 (123)
T COG4048 3 ISED-STAEELEPIAIAVH-ELVNRLPVTI---RSRNKPGLRLEKGEVVDD 48 (123)
T ss_pred ecCC-CCHHHHHHHHHHHH-HHHcccccee---eccCCCceeeccCcEecc
Confidence 4555 888886 77888 4665565555 354546666555444443
Done!