Query psy2927
Match_columns 123
No_of_seqs 215 out of 1104
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 21:10:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2927.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2927hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eki_A DRG 1, developmentally- 100.0 4.7E-39 1.6E-43 216.7 5.5 81 41-122 6-87 (93)
2 4a9a_A Ribosome-interacting GT 100.0 7.5E-35 2.6E-39 237.1 12.4 122 1-122 255-376 (376)
3 2dby_A GTP-binding protein; GD 99.9 6.2E-26 2.1E-30 183.8 6.5 116 1-121 207-366 (368)
4 1wxq_A GTP-binding protein; st 99.9 1.3E-25 4.5E-30 183.1 4.5 115 1-123 220-396 (397)
5 1jal_A YCHF protein; nucleotid 99.9 1.8E-24 6.1E-29 175.4 7.0 116 1-121 205-361 (363)
6 2ohf_A Protein OLA1, GTP-bindi 99.9 3.3E-24 1.1E-28 175.5 6.0 95 21-120 259-386 (396)
7 1ni3_A YCHF GTPase, YCHF GTP-b 99.9 4E-23 1.4E-27 168.7 6.2 95 21-120 261-388 (392)
8 3hvz_A Uncharacterized protein 99.3 6.7E-12 2.3E-16 81.6 8.0 52 63-122 17-68 (78)
9 2kmm_A Guanosine-3',5'-BIS(dip 98.1 6.7E-06 2.3E-10 51.1 5.9 52 63-122 12-63 (73)
10 1wb1_A Translation elongation 98.1 2.1E-07 7.1E-12 77.1 -2.2 116 1-117 131-280 (482)
11 1udx_A The GTP-binding protein 98.0 5.5E-07 1.9E-11 73.7 -1.4 115 1-119 275-405 (416)
12 3pqc_A Probable GTP-binding pr 97.3 0.00019 6.6E-09 49.9 4.0 45 1-45 139-193 (195)
13 2dyk_A GTP-binding protein; GT 97.3 0.00012 4.3E-09 49.4 2.4 45 1-45 114-161 (161)
14 4dhe_A Probable GTP-binding pr 97.2 0.00021 7.1E-09 51.3 3.6 46 1-46 150-211 (223)
15 3q72_A GTP-binding protein RAD 97.1 0.00036 1.2E-08 47.4 3.5 46 1-46 112-164 (166)
16 1lnz_A SPO0B-associated GTP-bi 97.1 0.00021 7.2E-09 56.8 2.3 46 1-46 280-330 (342)
17 1moz_A ARL1, ADP-ribosylation 97.1 0.00036 1.2E-08 48.2 3.2 45 1-45 125-179 (183)
18 3p32_A Probable GTPase RV1496/ 97.0 0.0003 1E-08 55.5 3.0 46 1-46 223-284 (355)
19 1r8s_A ADP-ribosylation factor 97.0 0.00034 1.2E-08 47.4 2.9 45 1-45 107-161 (164)
20 1svi_A GTP-binding protein YSX 97.0 0.00046 1.6E-08 48.3 3.4 45 1-45 140-194 (195)
21 3t1o_A Gliding protein MGLA; G 97.0 0.00076 2.6E-08 46.8 4.5 45 1-45 141-191 (198)
22 1c1y_A RAS-related protein RAP 97.0 0.00061 2.1E-08 46.0 3.9 44 1-44 114-165 (167)
23 3reg_A RHO-like small GTPase; 97.0 0.00062 2.1E-08 47.9 4.1 45 1-45 133-187 (194)
24 3q85_A GTP-binding protein REM 97.0 0.00048 1.6E-08 46.9 3.3 46 1-46 115-167 (169)
25 3iev_A GTP-binding protein ERA 97.0 0.00052 1.8E-08 53.1 3.9 46 1-46 128-182 (308)
26 1zd9_A ADP-ribosylation factor 97.0 0.00033 1.1E-08 49.3 2.5 46 1-46 130-185 (188)
27 1ksh_A ARF-like protein 2; sma 97.0 0.00036 1.2E-08 48.6 2.6 46 1-46 125-180 (186)
28 4bas_A ADP-ribosylation factor 97.0 0.0003 1E-08 49.3 2.1 46 1-46 133-189 (199)
29 1z0j_A RAB-22, RAS-related pro 96.9 0.00058 2E-08 46.3 3.3 45 1-45 117-168 (170)
30 1upt_A ARL1, ADP-ribosylation 96.9 0.00031 1.1E-08 47.8 1.9 45 1-45 114-168 (171)
31 2h57_A ADP-ribosylation factor 96.9 0.00032 1.1E-08 49.3 2.0 46 1-46 132-187 (190)
32 2x77_A ADP-ribosylation factor 96.9 0.00042 1.4E-08 48.5 2.6 45 1-45 129-183 (189)
33 3tkl_A RAS-related protein RAB 96.9 0.001 3.4E-08 46.4 4.6 46 1-46 127-179 (196)
34 1r2q_A RAS-related protein RAB 96.9 0.00046 1.6E-08 46.7 2.6 45 1-45 117-168 (170)
35 1ky3_A GTP-binding protein YPT 96.9 0.0011 3.7E-08 45.4 4.6 44 1-44 124-176 (182)
36 2ce2_X GTPase HRAS; signaling 96.9 0.0011 3.8E-08 44.3 4.5 44 1-44 114-163 (166)
37 1m2o_B GTP-binding protein SAR 96.9 0.00077 2.6E-08 47.7 3.8 44 1-44 130-190 (190)
38 2h17_A ADP-ribosylation factor 96.9 0.00027 9.4E-09 49.3 1.4 43 1-43 128-180 (181)
39 3sjy_A Translation initiation 96.9 0.00068 2.3E-08 54.3 3.8 45 1-45 135-191 (403)
40 2b6h_A ADP-ribosylation factor 96.9 0.00054 1.8E-08 48.6 2.8 45 1-45 136-190 (192)
41 1zj6_A ADP-ribosylation factor 96.9 0.00072 2.4E-08 47.3 3.4 45 1-45 123-177 (187)
42 2e87_A Hypothetical protein PH 96.8 0.00093 3.2E-08 52.6 4.3 46 1-46 286-336 (357)
43 1fzq_A ADP-ribosylation factor 96.8 0.00051 1.7E-08 48.2 2.4 45 1-45 123-177 (181)
44 2g6b_A RAS-related protein RAB 96.8 0.0011 3.7E-08 45.5 4.1 45 1-45 122-173 (180)
45 4dsu_A GTPase KRAS, isoform 2B 96.8 0.0011 3.7E-08 45.8 4.1 47 1-47 115-167 (189)
46 2nzj_A GTP-binding protein REM 96.8 0.0009 3.1E-08 45.6 3.6 45 1-45 117-168 (175)
47 1z08_A RAS-related protein RAB 96.8 0.00083 2.8E-08 45.6 3.3 44 1-44 117-167 (170)
48 2cxx_A Probable GTP-binding pr 96.8 0.0005 1.7E-08 47.7 2.2 45 1-45 128-183 (190)
49 1f6b_A SAR1; gtpases, N-termin 96.8 0.0011 3.7E-08 47.3 4.0 24 21-44 174-197 (198)
50 3ihw_A Centg3; RAS, centaurin, 96.8 0.0011 3.9E-08 46.7 4.1 45 1-45 125-179 (184)
51 1wwt_A Threonyl-tRNA synthetas 96.8 0.0014 4.7E-08 42.0 4.1 52 63-122 21-73 (88)
52 3gee_A MNME, tRNA modification 96.8 0.00064 2.2E-08 56.3 3.1 45 1-45 349-397 (476)
53 2efe_B Small GTP-binding prote 96.8 0.0011 3.7E-08 45.5 3.9 45 1-45 123-174 (181)
54 2lkc_A Translation initiation 96.8 0.00057 1.9E-08 46.9 2.3 46 1-46 113-171 (178)
55 1xzp_A Probable tRNA modificat 96.8 0.0012 4.2E-08 54.7 4.7 45 1-45 356-404 (482)
56 2iwr_A Centaurin gamma 1; ANK 96.8 0.0012 4.1E-08 45.5 3.9 44 1-44 114-167 (178)
57 2p67_A LAO/AO transport system 96.8 0.00095 3.2E-08 52.4 3.7 45 1-45 200-260 (341)
58 2fn4_A P23, RAS-related protei 96.7 0.00083 2.8E-08 46.0 2.9 45 1-45 120-171 (181)
59 2fg5_A RAB-22B, RAS-related pr 96.7 0.00087 3E-08 47.2 3.1 45 1-45 134-185 (192)
60 3tw8_B RAS-related protein RAB 96.7 0.0015 5E-08 44.7 4.1 45 1-45 119-170 (181)
61 1z2a_A RAS-related protein RAB 96.7 0.00068 2.3E-08 45.9 2.4 44 1-44 115-165 (168)
62 2hxs_A RAB-26, RAS-related pro 96.7 0.0012 4E-08 45.3 3.6 45 1-45 121-172 (178)
63 2hj1_A Hypothetical protein; s 96.7 0.0022 7.6E-08 42.7 4.8 61 48-121 17-84 (97)
64 2atx_A Small GTP binding prote 96.7 0.0017 5.8E-08 45.5 4.4 24 21-44 168-191 (194)
65 1g16_A RAS-related protein SEC 96.7 0.0016 5.4E-08 44.1 4.1 45 1-45 114-164 (170)
66 4gzl_A RAS-related C3 botulinu 96.7 0.00068 2.3E-08 48.5 2.3 24 21-44 180-203 (204)
67 2f7s_A C25KG, RAS-related prot 96.7 0.0017 5.7E-08 46.4 4.3 45 1-45 147-198 (217)
68 1z0f_A RAB14, member RAS oncog 96.7 0.0015 5E-08 44.6 3.9 44 1-44 126-176 (179)
69 1u8z_A RAS-related protein RAL 96.7 0.00082 2.8E-08 45.2 2.5 44 1-44 115-165 (168)
70 2gf9_A RAS-related protein RAB 96.7 0.00098 3.4E-08 46.6 3.0 44 1-44 133-183 (189)
71 3bc1_A RAS-related protein RAB 96.7 0.0012 4.3E-08 45.5 3.4 45 1-45 133-184 (195)
72 3ec1_A YQEH GTPase; atnos1, at 96.7 0.0019 6.5E-08 51.5 4.9 47 1-47 104-163 (369)
73 1wms_A RAB-9, RAB9, RAS-relate 96.7 0.002 6.7E-08 44.1 4.4 44 1-44 122-172 (177)
74 4djt_A GTP-binding nuclear pro 96.7 0.0013 4.3E-08 47.1 3.5 46 1-46 123-175 (218)
75 2erx_A GTP-binding protein DI- 96.7 0.0013 4.4E-08 44.5 3.4 46 1-46 115-167 (172)
76 1x3s_A RAS-related protein RAB 96.6 0.0016 5.6E-08 45.2 3.9 46 1-46 127-178 (195)
77 3geh_A MNME, tRNA modification 96.6 0.00096 3.3E-08 55.0 3.1 46 1-46 336-384 (462)
78 2bcg_Y Protein YP2, GTP-bindin 96.6 0.0021 7.2E-08 45.5 4.4 46 1-46 119-171 (206)
79 2wsm_A Hydrogenase expression/ 96.6 0.00074 2.5E-08 48.5 1.9 45 1-45 160-213 (221)
80 3h2y_A GTPase family protein; 96.6 0.0011 3.7E-08 53.0 2.9 45 1-45 102-159 (368)
81 2y8e_A RAB-protein 6, GH09086P 96.6 0.0016 5.5E-08 44.4 3.5 45 1-45 125-176 (179)
82 1kao_A RAP2A; GTP-binding prot 96.6 0.00079 2.7E-08 45.2 1.9 45 1-45 114-165 (167)
83 2hup_A RAS-related protein RAB 96.6 0.0014 4.8E-08 46.7 3.3 45 1-45 140-192 (201)
84 2gj8_A MNME, tRNA modification 96.6 0.00011 3.7E-09 51.5 -2.6 45 1-46 121-166 (172)
85 3o47_A ADP-ribosylation factor 96.6 0.0015 5E-08 51.1 3.6 45 1-45 272-326 (329)
86 1ek0_A Protein (GTP-binding pr 96.6 0.00075 2.6E-08 45.6 1.7 45 1-45 114-168 (170)
87 1vg8_A RAS-related protein RAB 96.6 0.0024 8.4E-08 44.9 4.5 45 1-45 123-174 (207)
88 2fu5_C RAS-related protein RAB 96.6 0.0015 5.2E-08 45.1 3.3 45 1-45 119-170 (183)
89 3dz8_A RAS-related protein RAB 96.6 0.0018 6E-08 45.5 3.6 45 1-45 134-185 (191)
90 3con_A GTPase NRAS; structural 96.5 0.0023 7.7E-08 44.6 4.1 46 1-46 132-183 (190)
91 2il1_A RAB12; G-protein, GDP, 96.5 0.0013 4.5E-08 46.4 2.9 44 1-44 137-188 (192)
92 3bwd_D RAC-like GTP-binding pr 96.5 0.0011 3.8E-08 45.6 2.4 24 21-44 156-179 (182)
93 3lvq_E ARF-GAP with SH3 domain 96.5 0.001 3.5E-08 54.2 2.5 46 1-46 429-484 (497)
94 3t5g_A GTP-binding protein RHE 96.5 0.0011 3.9E-08 45.7 2.4 46 1-46 117-169 (181)
95 2bov_A RAla, RAS-related prote 96.5 0.0017 5.9E-08 45.6 3.4 46 1-46 125-177 (206)
96 1yrb_A ATP(GTP)binding protein 96.5 0.0018 6E-08 47.8 3.5 26 21-46 232-257 (262)
97 2gf0_A GTP-binding protein DI- 96.5 0.0028 9.5E-08 44.2 4.3 47 1-47 120-172 (199)
98 3clv_A RAB5 protein, putative; 96.5 0.0028 9.7E-08 43.7 4.3 44 1-44 153-202 (208)
99 2oil_A CATX-8, RAS-related pro 96.5 0.0018 6.2E-08 45.3 3.3 44 1-44 136-186 (193)
100 2a9k_A RAS-related protein RAL 96.5 0.0021 7E-08 44.2 3.5 45 1-45 129-180 (187)
101 1wf3_A GTP-binding protein; GT 96.5 0.00056 1.9E-08 53.1 0.5 46 1-46 123-173 (301)
102 2ew1_A RAS-related protein RAB 96.5 0.0019 6.6E-08 46.4 3.4 45 1-45 137-188 (201)
103 2a5j_A RAS-related protein RAB 96.5 0.002 6.9E-08 45.2 3.4 44 1-44 132-182 (191)
104 1mh1_A RAC1; GTP-binding, GTPa 96.4 0.0008 2.7E-08 46.3 1.2 25 21-45 155-179 (186)
105 1s0u_A EIF-2-gamma, translatio 96.4 0.0024 8.1E-08 51.2 4.1 45 1-45 141-197 (408)
106 2gco_A H9, RHO-related GTP-bin 96.4 0.0022 7.6E-08 45.5 3.5 24 21-44 175-198 (201)
107 3cbq_A GTP-binding protein REM 96.4 0.0033 1.1E-07 44.7 4.4 45 1-45 136-187 (195)
108 2wji_A Ferrous iron transport 96.4 0.00078 2.7E-08 46.5 1.0 44 1-44 114-163 (165)
109 2j1l_A RHO-related GTP-binding 96.4 0.0016 5.5E-08 46.9 2.7 24 21-44 184-207 (214)
110 3kkq_A RAS-related protein M-R 96.4 0.0042 1.4E-07 42.8 4.8 45 1-45 129-181 (183)
111 1zbd_A Rabphilin-3A; G protein 96.4 0.0023 7.9E-08 45.1 3.4 45 1-45 119-170 (203)
112 1tke_A Threonyl-tRNA synthetas 96.4 0.0059 2E-07 45.4 5.6 52 63-122 11-62 (224)
113 2yc2_C IFT27, small RAB-relate 96.4 0.0013 4.3E-08 46.2 1.9 44 1-44 138-190 (208)
114 1kk1_A EIF2gamma; initiation o 96.4 0.0028 9.7E-08 50.7 4.1 45 1-45 143-199 (410)
115 2www_A Methylmalonic aciduria 96.4 0.0013 4.3E-08 52.1 2.0 46 1-46 218-279 (349)
116 1puj_A YLQF, conserved hypothe 96.4 0.0019 6.6E-08 49.7 3.0 45 1-45 56-105 (282)
117 2qu8_A Putative nucleolar GTP- 96.3 0.0016 5.5E-08 47.3 2.3 48 1-48 148-207 (228)
118 3l0i_B RAS-related protein RAB 96.3 0.00062 2.1E-08 48.3 -0.0 45 1-45 144-195 (199)
119 2hf9_A Probable hydrogenase ni 96.3 0.0012 4E-08 47.6 1.5 45 1-45 170-223 (226)
120 1ega_A Protein (GTP-binding pr 96.3 0.0026 8.8E-08 49.1 3.4 46 1-46 122-175 (301)
121 2fv8_A H6, RHO-related GTP-bin 96.3 0.0029 9.9E-08 45.1 3.5 24 21-44 175-198 (207)
122 2o52_A RAS-related protein RAB 96.3 0.0037 1.3E-07 44.4 3.9 45 1-45 136-187 (200)
123 3cph_A RAS-related protein SEC 96.3 0.0039 1.3E-07 44.0 3.9 46 1-46 131-182 (213)
124 2q3h_A RAS homolog gene family 96.2 0.0024 8.3E-08 44.9 2.8 24 21-44 170-193 (201)
125 3c5h_A Glucocorticoid receptor 96.2 0.0038 1.3E-07 46.7 3.8 44 1-44 204-253 (255)
126 2p5s_A RAS and EF-hand domain 96.2 0.0024 8E-08 45.2 2.5 45 1-45 139-196 (199)
127 2g3y_A GTP-binding protein GEM 96.2 0.0037 1.3E-07 45.8 3.6 45 1-45 151-202 (211)
128 2bme_A RAB4A, RAS-related prot 96.1 0.0041 1.4E-07 42.9 3.5 45 1-45 121-172 (186)
129 2qm8_A GTPase/ATPase; G protei 96.1 0.0046 1.6E-07 48.7 4.1 27 19-45 234-260 (337)
130 1mky_A Probable GTP-binding pr 96.1 0.0022 7.6E-08 51.8 2.3 46 1-46 116-166 (439)
131 3cpj_B GTP-binding protein YPT 96.1 0.0041 1.4E-07 44.9 3.6 46 1-46 124-176 (223)
132 3oes_A GTPase rhebl1; small GT 96.1 0.0021 7.3E-08 45.5 1.7 46 1-46 135-187 (201)
133 2j0v_A RAC-like GTP-binding pr 96.1 0.0021 7.1E-08 45.7 1.7 45 1-45 119-179 (212)
134 2yv5_A YJEQ protein; hydrolase 96.0 0.003 1E-07 48.9 2.5 41 1-41 116-164 (302)
135 2hjg_A GTP-binding protein ENG 96.0 0.0019 6.6E-08 52.2 1.5 45 1-45 117-164 (436)
136 2atv_A RERG, RAS-like estrogen 96.0 0.0033 1.1E-07 44.2 2.5 45 1-45 138-190 (196)
137 4dkx_A RAS-related protein RAB 96.0 0.0062 2.1E-07 44.9 4.0 45 1-45 124-175 (216)
138 3gj0_A GTP-binding nuclear pro 95.9 0.0018 6.2E-08 46.5 0.8 45 1-45 125-174 (221)
139 3i8s_A Ferrous iron transport 95.9 0.00068 2.3E-08 51.6 -1.6 46 1-46 118-169 (274)
140 2cjw_A GTP-binding protein GEM 95.9 0.0064 2.2E-07 43.1 3.6 45 1-45 120-171 (192)
141 3th5_A RAS-related C3 botulinu 94.9 0.0013 4.6E-08 46.6 0.0 23 21-43 180-202 (204)
142 3q3j_B RHO-related GTP-binding 95.9 0.0038 1.3E-07 45.0 2.4 25 21-45 177-202 (214)
143 4dcu_A GTP-binding protein ENG 95.9 0.0031 1.1E-07 51.2 2.1 44 1-44 312-367 (456)
144 2qtf_A Protein HFLX, GTP-bindi 95.8 0.0022 7.7E-08 51.1 1.2 47 1-47 298-355 (364)
145 1u0l_A Probable GTPase ENGC; p 95.8 0.004 1.4E-07 48.0 2.5 41 1-41 121-168 (301)
146 3j2k_7 ERF3, eukaryotic polype 95.8 0.0062 2.1E-07 49.5 3.6 18 21-38 200-217 (439)
147 3cb4_D GTP-binding protein LEP 95.8 0.0079 2.7E-07 51.2 4.3 46 1-46 129-182 (599)
148 1mky_A Probable GTP-binding pr 95.8 0.0059 2E-07 49.3 3.3 45 1-45 298-354 (439)
149 3c5c_A RAS-like protein 12; GD 95.7 0.0043 1.5E-07 43.5 2.2 44 1-44 133-184 (187)
150 2wjg_A FEOB, ferrous iron tran 95.7 0.0026 8.9E-08 44.1 0.9 46 1-46 118-169 (188)
151 3iby_A Ferrous iron transport 95.6 0.0019 6.5E-08 48.8 -0.1 43 1-43 116-164 (256)
152 3b1v_A Ferrous iron uptake tra 95.6 0.0031 1E-07 48.2 1.1 45 1-45 113-163 (272)
153 2ywe_A GTP-binding protein LEP 95.6 0.0074 2.5E-07 51.4 3.5 46 1-46 131-184 (600)
154 1z06_A RAS-related protein RAB 95.5 0.0095 3.3E-07 41.4 3.4 44 1-44 133-186 (189)
155 3qq5_A Small GTP-binding prote 95.5 0.0027 9.2E-08 51.9 0.5 46 1-46 146-196 (423)
156 2wkq_A NPH1-1, RAS-related C3 95.5 0.0061 2.1E-07 46.0 2.4 24 21-44 305-328 (332)
157 3cnl_A YLQF, putative uncharac 95.5 0.0029 1E-07 48.2 0.4 43 1-44 52-99 (262)
158 2zej_A Dardarin, leucine-rich 95.5 0.0087 3E-07 41.7 2.9 46 1-46 118-178 (184)
159 1m7b_A RND3/RHOE small GTP-bin 95.4 0.0065 2.2E-07 42.2 2.0 25 20-44 156-181 (184)
160 3a1s_A Iron(II) transport prot 95.3 0.0081 2.8E-07 45.3 2.5 45 1-45 116-166 (258)
161 2hjg_A GTP-binding protein ENG 95.2 0.0065 2.2E-07 49.0 1.8 45 1-45 292-348 (436)
162 3izq_1 HBS1P, elongation facto 95.2 0.0044 1.5E-07 52.7 0.7 37 1-37 311-363 (611)
163 3izy_P Translation initiation 95.2 0.0081 2.8E-07 50.6 2.3 47 1-47 110-169 (537)
164 2elf_A Protein translation elo 95.1 0.013 4.6E-07 46.6 3.3 45 1-46 118-180 (370)
165 3t5d_A Septin-7; GTP-binding p 95.1 0.0055 1.9E-07 46.2 0.9 46 1-46 150-204 (274)
166 2fh5_B SR-beta, signal recogni 95.0 0.0085 2.9E-07 42.5 1.7 22 22-43 186-213 (214)
167 3k53_A Ferrous iron transport 95.0 0.0044 1.5E-07 46.6 0.2 74 1-86 115-194 (271)
168 1gwn_A RHO-related GTP-binding 95.0 0.0062 2.1E-07 43.8 0.9 24 21-44 178-202 (205)
169 4dcu_A GTP-binding protein ENG 94.8 0.0082 2.8E-07 48.7 1.4 46 1-46 137-185 (456)
170 3dpu_A RAB family protein; roc 94.7 0.015 5E-07 48.1 2.6 46 1-46 156-208 (535)
171 2rcn_A Probable GTPase ENGC; Y 94.7 0.023 8E-07 45.5 3.6 39 1-39 166-212 (358)
172 2c78_A Elongation factor TU-A; 94.5 0.013 4.4E-07 46.8 1.8 45 1-45 134-211 (405)
173 2aka_B Dynamin-1; fusion prote 94.5 0.004 1.4E-07 46.7 -1.2 45 1-45 198-252 (299)
174 3p26_A Elongation factor 1 alp 94.4 0.0064 2.2E-07 49.8 -0.2 15 21-35 213-227 (483)
175 1g7s_A Translation initiation 94.4 0.019 6.6E-07 48.7 2.7 25 21-45 193-217 (594)
176 1d2e_A Elongation factor TU (E 94.2 0.019 6.4E-07 45.8 2.2 45 1-45 125-194 (397)
177 3llu_A RAS-related GTP-binding 94.2 0.025 8.5E-07 39.7 2.6 23 21-44 173-195 (196)
178 2q5w_D Molybdopterin convertin 94.2 0.04 1.4E-06 33.9 3.2 52 63-121 19-72 (77)
179 3mca_A HBS1, elongation factor 94.0 0.016 5.4E-07 49.1 1.4 25 21-45 358-396 (592)
180 1vjk_A Molybdopterin convertin 93.8 0.11 3.8E-06 33.7 4.9 54 62-121 29-93 (98)
181 3po0_A Small archaeal modifier 93.6 0.14 4.8E-06 32.4 5.0 54 62-121 20-84 (89)
182 3tr5_A RF-3, peptide chain rel 93.4 0.038 1.3E-06 46.2 2.6 25 22-46 253-277 (528)
183 1zun_B Sulfate adenylate trans 92.8 0.031 1.1E-06 45.0 1.1 35 1-35 163-213 (434)
184 1pui_A ENGB, probable GTP-bind 92.7 0.088 3E-06 36.9 3.3 45 1-45 143-198 (210)
185 2g1e_A Hypothetical protein TA 92.7 0.28 9.4E-06 30.8 5.4 55 63-121 18-85 (90)
186 1t9h_A YLOQ, probable GTPase E 92.4 0.0078 2.7E-07 47.2 -2.8 35 1-35 123-166 (307)
187 2cu3_A Unknown function protei 92.2 0.087 3E-06 31.7 2.4 49 63-122 8-60 (64)
188 1ryj_A Unknown; beta/alpha pro 92.2 0.22 7.7E-06 30.4 4.3 50 63-122 17-66 (70)
189 1rws_A Hypothetical protein PF 91.9 0.029 9.8E-07 35.2 -0.1 50 62-121 23-72 (77)
190 1f0z_A THis protein; ubiquitin 91.8 0.034 1.2E-06 33.7 0.2 50 63-122 9-62 (66)
191 1zo1_I IF2, translation initia 91.8 0.02 6.9E-07 47.7 -1.1 43 1-43 109-164 (501)
192 2f9l_A RAB11B, member RAS onco 91.7 0.12 4.1E-06 36.2 3.0 45 1-45 116-167 (199)
193 3rpf_C Molybdopterin convertin 91.5 0.32 1.1E-05 29.8 4.5 49 63-121 15-69 (74)
194 1jny_A EF-1-alpha, elongation 91.1 0.061 2.1E-06 43.4 1.1 15 21-35 188-202 (435)
195 1fm0_D Molybdopterin convertin 91.0 0.29 9.8E-06 30.1 3.9 49 67-121 23-76 (81)
196 3zvr_A Dynamin-1; hydrolase, D 90.7 0.023 7.8E-07 49.9 -1.9 43 1-43 223-275 (772)
197 2xtp_A GTPase IMAP family memb 90.5 0.034 1.2E-06 41.0 -0.9 24 23-46 185-208 (260)
198 1jwy_B Dynamin A GTPase domain 90.3 0.051 1.8E-06 41.0 -0.1 46 1-46 204-262 (315)
199 3avx_A Elongation factor TS, e 89.6 0.19 6.5E-06 46.4 3.0 45 1-45 418-485 (1289)
200 2x2e_A Dynamin-1; nitration, h 89.5 0.022 7.6E-07 44.6 -2.8 43 1-43 203-255 (353)
201 1oix_A RAS-related protein RAB 89.3 0.25 8.4E-06 34.6 2.9 44 1-44 140-190 (191)
202 2j69_A Bacterial dynamin-like 89.3 0.13 4.6E-06 44.1 1.7 25 21-45 286-324 (695)
203 2k5p_A THis protein, thiamine- 88.9 0.19 6.4E-06 31.7 1.8 51 63-122 9-65 (78)
204 1f60_A Elongation factor EEF1A 88.6 0.095 3.2E-06 42.7 0.3 36 1-36 151-202 (458)
205 1tyg_B YJBS; alpha beta barrel 87.4 0.3 1E-05 31.5 2.1 51 63-122 29-83 (87)
206 1r5b_A Eukaryotic peptide chai 87.1 0.16 5.5E-06 41.4 0.8 16 21-36 227-242 (467)
207 2qag_A Septin-2, protein NEDD5 85.7 0.25 8.7E-06 38.9 1.3 45 1-45 180-236 (361)
208 2k9x_A Tburm1, uncharacterized 85.3 0.46 1.6E-05 31.9 2.2 17 106-122 82-98 (110)
209 2l52_A Methanosarcina acetivor 84.6 1.7 5.8E-05 28.0 4.7 16 106-121 79-94 (99)
210 2qjl_A URM1, ubiquitin-related 83.4 1.7 5.7E-05 28.0 4.3 58 63-121 23-94 (99)
211 2kl0_A Putative thiamin biosyn 83.3 0.38 1.3E-05 29.9 1.0 49 63-122 9-61 (73)
212 3r7w_A Gtpase1, GTP-binding pr 83.1 0.66 2.3E-05 35.4 2.6 40 1-41 121-176 (307)
213 2qnr_A Septin-2, protein NEDD5 81.5 0.44 1.5E-05 36.5 1.0 43 1-44 161-212 (301)
214 3dwg_C 9.5 kDa culture filtrat 80.3 1.4 4.7E-05 27.9 2.9 16 106-121 73-88 (93)
215 3lxw_A GTPase IMAP family memb 79.2 0.85 2.9E-05 33.6 1.9 46 1-46 145-208 (247)
216 3j25_A Tetracycline resistance 77.8 1.6 5.5E-05 37.0 3.4 25 21-45 214-238 (638)
217 2io1_B Small ubiquitin-related 77.8 9.4 0.00032 24.3 6.5 58 62-122 20-79 (94)
218 1wgk_A Riken cDNA 2900073H19 p 77.3 1.1 3.8E-05 30.1 1.8 18 105-122 87-104 (114)
219 1cip_A Protein (guanine nucleo 76.0 0.63 2.1E-05 36.8 0.4 23 22-44 320-342 (353)
220 3kt9_A Aprataxin; FHA domain, 74.8 1.8 6.2E-05 28.7 2.3 45 77-121 40-91 (102)
221 1zcb_A G alpha I/13; GTP-bindi 73.9 0.88 3E-05 36.1 0.7 23 22-44 329-351 (362)
222 2io0_B Small ubiquitin-related 72.3 10 0.00034 24.1 5.5 55 62-122 18-77 (91)
223 2l32_A Small archaeal modifier 70.9 2 6.9E-05 26.5 1.8 48 63-121 14-61 (74)
224 1v8c_A MOAD related protein; r 69.7 2.4 8.3E-05 30.2 2.2 52 63-121 17-82 (168)
225 3lxx_A GTPase IMAP family memb 67.2 2.3 8E-05 30.5 1.7 45 1-45 151-213 (239)
226 2d07_B Ubiquitin-like protein 66.1 22 0.00075 22.4 6.8 55 62-122 30-89 (93)
227 1qf6_A THRRS, threonyl-tRNA sy 64.7 8.4 0.00029 32.7 4.9 51 63-121 11-61 (642)
228 2qag_C Septin-7; cell cycle, c 61.1 2.3 7.9E-05 34.4 0.7 46 1-46 173-227 (418)
229 3a4r_A Nfatc2-interacting prot 60.6 19 0.00066 21.9 4.9 53 63-121 22-79 (79)
230 1nyr_A Threonyl-tRNA synthetas 60.1 8.2 0.00028 32.6 4.0 50 64-121 14-63 (645)
231 3t34_A Dynamin-related protein 60.1 2 6.8E-05 33.3 0.2 82 1-90 209-297 (360)
232 1wz0_A Ubiquitin-like protein 59.0 18 0.00062 23.5 4.8 53 63-121 38-95 (104)
233 3fm8_A Kinesin-like protein KI 58.4 5.9 0.0002 26.8 2.3 19 101-119 95-113 (124)
234 4ejq_A Kinesin-like protein KI 57.5 5.6 0.00019 27.6 2.2 19 101-119 115-133 (154)
235 3fm3_A Methionine aminopeptida 56.6 13 0.00046 29.1 4.5 53 66-119 66-129 (358)
236 3gqs_A Adenylate cyclase-like 54.7 5.8 0.0002 25.5 1.7 19 101-119 74-92 (106)
237 1wln_A Afadin; beta sandwich, 54.1 7.4 0.00025 25.6 2.2 19 101-119 85-103 (120)
238 1nrj_B SR-beta, signal recogni 53.5 1.2 4.2E-05 31.1 -1.9 32 1-32 126-170 (218)
239 1wjn_A Tubulin-folding protein 53.0 31 0.0011 21.5 5.1 57 63-121 26-91 (97)
240 4h87_A Kanadaptin; FHA domain 52.6 7.6 0.00026 26.2 2.1 19 101-119 99-119 (130)
241 3l82_B F-box only protein 4; T 51.7 13 0.00043 28.1 3.4 25 21-45 198-222 (227)
242 3hx1_A SLR1951 protein; P74513 50.3 5.9 0.0002 26.7 1.3 18 101-119 87-104 (131)
243 2dy1_A Elongation factor G; tr 50.3 7.9 0.00027 32.9 2.3 26 21-46 249-274 (665)
244 2h5e_A Peptide chain release f 49.5 8.4 0.00029 31.9 2.3 26 21-46 253-278 (529)
245 1lgp_A Cell cycle checkpoint p 49.0 9.8 0.00033 24.7 2.2 21 101-121 73-95 (116)
246 1dar_A EF-G, elongation factor 46.7 9.8 0.00033 32.5 2.3 26 21-46 257-282 (691)
247 2k8h_A Small ubiquitin protein 46.6 36 0.0012 22.3 4.7 53 63-121 40-97 (110)
248 1r21_A Antigen KI-67; beta san 45.5 7.7 0.00026 25.7 1.2 19 101-119 80-98 (128)
249 2uyz_B Small ubiquitin-related 44.3 46 0.0016 19.4 5.6 70 47-122 4-75 (79)
250 3vqt_A RF-3, peptide chain rel 43.6 15 0.00051 30.5 2.9 25 22-46 271-295 (548)
251 1dmz_A Protein (protein kinase 43.2 7.3 0.00025 27.1 0.9 19 101-119 88-108 (158)
252 1gxc_A CHK2, CDS1, serine/thre 42.8 9.9 0.00034 26.0 1.5 19 101-119 108-128 (149)
253 2jqj_A DNA damage response pro 42.6 12 0.00041 25.6 1.9 19 101-119 92-111 (151)
254 2rdo_7 EF-G, elongation factor 42.0 16 0.00054 31.3 2.9 26 21-46 263-288 (704)
255 1qu5_A Protein kinase SPK1; FH 41.5 9.3 0.00032 27.4 1.2 19 101-119 112-132 (182)
256 2xex_A Elongation factor G; GT 41.2 13 0.00045 31.7 2.3 26 21-46 255-280 (693)
257 3po8_A RV0020C protein, putati 41.2 13 0.00044 23.4 1.8 18 101-119 70-87 (100)
258 1wgr_A Growth factor receptor- 40.1 32 0.0011 22.5 3.6 35 46-90 11-45 (100)
259 3n3k_B Ubiquitin; hydrolase, p 39.6 57 0.0019 19.1 5.2 57 63-122 17-75 (85)
260 1g6g_A Protein kinase RAD53; b 39.5 16 0.00056 24.1 2.1 19 101-119 84-104 (127)
261 2pie_A E3 ubiquitin-protein li 39.4 16 0.00055 24.6 2.1 19 101-119 80-100 (138)
262 3plu_A Ubiquitin-like modifier 38.8 73 0.0025 20.4 5.1 68 44-120 19-91 (93)
263 2j37_W Signal recognition part 37.7 1.9 6.4E-05 35.9 -3.4 22 22-43 288-310 (504)
264 2brf_A Bifunctional polynucleo 37.7 14 0.00048 24.6 1.6 36 85-120 58-96 (110)
265 3goe_A DNA repair protein RAD6 37.0 79 0.0027 20.0 5.1 55 63-120 23-80 (82)
266 1uht_A Expressed protein; FHA 36.8 13 0.00046 24.1 1.3 19 101-119 81-101 (118)
267 2csw_A Ubiquitin ligase protei 36.2 16 0.00056 24.8 1.8 19 101-119 88-108 (145)
268 3a9j_A Ubiquitin; protein comp 35.5 61 0.0021 18.3 5.4 57 63-122 14-72 (76)
269 1wm3_A Ubiquitin-like protein 35.4 68 0.0023 18.8 5.6 56 62-120 14-71 (72)
270 1tq4_A IIGP1, interferon-induc 35.3 25 0.00087 28.2 3.0 27 20-46 225-253 (413)
271 3mtn_B UBA80, ubcep1, ubiquiti 35.3 67 0.0023 18.7 5.7 70 47-122 4-75 (85)
272 3va4_A Mediator of DNA damage 35.1 18 0.00063 24.3 1.9 19 101-119 94-116 (132)
273 3mx6_A Methionine aminopeptida 35.1 33 0.0011 25.2 3.4 50 68-119 37-97 (262)
274 1wyw_B Ubiquitin-like protein 34.4 82 0.0028 19.4 6.0 70 47-122 22-93 (97)
275 2jpe_A Nuclear inhibitor of pr 34.2 14 0.00046 25.0 1.1 19 101-119 105-125 (140)
276 2xt9_B Putative signal transdu 34.0 21 0.00071 23.1 1.9 18 101-119 78-95 (115)
277 2q8k_A Proliferation-associate 33.6 41 0.0014 26.7 4.0 51 67-119 47-115 (401)
278 2v31_A Ubiquitin-activating en 33.4 20 0.00069 23.9 1.8 13 107-119 38-50 (112)
279 3tav_A Methionine aminopeptida 32.8 77 0.0026 23.6 5.2 50 68-119 63-124 (286)
280 1g3g_A Protien kinase SPK1; FH 32.7 22 0.00074 24.7 2.0 19 101-119 112-132 (164)
281 1v2y_A 3300001G02RIK protein; 32.1 1E+02 0.0035 19.9 7.1 66 47-122 8-95 (105)
282 1v1c_A Obscurin; muscle, sarco 31.9 39 0.0013 20.9 2.8 24 99-122 13-37 (71)
283 1mzk_A Kinase associated prote 31.4 17 0.00058 24.5 1.2 19 101-119 81-109 (139)
284 2kb3_A Oxoglutarate dehydrogen 31.2 19 0.00064 24.6 1.4 18 101-119 113-130 (143)
285 1xgs_A Methionine aminopeptida 30.8 74 0.0025 24.0 4.9 51 68-119 26-81 (295)
286 3r7w_B Gtpase2, GTP-binding pr 30.8 19 0.00065 28.3 1.5 16 22-38 151-166 (331)
287 3elv_A PRE-mRNA leakage protei 30.7 18 0.00061 26.7 1.3 19 101-119 169-189 (205)
288 2ff4_A Probable regulatory pro 30.6 24 0.00081 27.6 2.1 19 101-119 353-371 (388)
289 4fuk_A Methionine aminopeptida 29.9 43 0.0015 25.8 3.4 52 66-119 90-152 (337)
290 4b6a_t Probable metalloproteas 29.9 38 0.0013 29.0 3.3 19 67-86 77-95 (614)
291 2bps_A YUKD protein; ubiquitin 29.7 36 0.0012 21.3 2.4 13 107-119 68-80 (81)
292 1ndd_A NEDD8, protein (ubiquit 29.3 80 0.0028 17.8 5.9 57 63-122 14-72 (76)
293 3els_A PRE-mRNA leakage protei 28.9 18 0.00061 25.3 1.0 19 101-119 122-142 (158)
294 2l76_A Nfatc2-interacting prot 28.7 27 0.00093 22.7 1.8 21 100-120 65-90 (95)
295 3g8r_A Probable spore coat pol 28.5 2E+02 0.0067 22.7 7.1 21 60-80 134-154 (350)
296 2nw5_A Methionine aminopeptida 27.3 89 0.003 24.5 4.9 53 66-119 68-131 (360)
297 3ohm_A Guanine nucleotide-bind 27.0 15 0.00051 28.6 0.3 23 22-44 294-316 (327)
298 1vli_A Spore coat polysacchari 26.9 2E+02 0.0069 23.0 6.9 21 61-81 158-178 (385)
299 2k6p_A Uncharacterized protein 26.6 41 0.0014 20.7 2.3 22 99-120 29-50 (92)
300 3v6c_B Ubiquitin; structural g 25.5 1.1E+02 0.0039 18.3 5.8 70 47-122 18-89 (91)
301 4a6q_A Histone deacetylase com 25.5 1.1E+02 0.0037 21.3 4.5 40 55-95 49-94 (143)
302 2eke_C Ubiquitin-like protein 24.7 1.5E+02 0.005 19.2 5.3 59 61-122 42-102 (106)
303 2kfu_A RV1827 PThr 22; FHA dom 24.3 33 0.0011 24.0 1.6 18 101-119 122-139 (162)
304 3tb5_A Methionine aminopeptida 24.3 85 0.0029 22.8 4.1 51 67-119 32-93 (264)
305 3dbh_I NEDD8; cell cycle, acti 24.3 1.1E+02 0.0039 17.8 4.6 70 47-122 13-84 (88)
306 2l7r_A Ubiquitin-like protein 23.5 83 0.0028 19.3 3.3 68 47-122 20-89 (93)
307 2wqp_A Polysialic acid capsule 23.0 1.8E+02 0.0062 22.8 5.9 22 60-81 147-168 (349)
308 2jvf_A De novo protein M7; tet 22.7 40 0.0014 21.2 1.6 24 22-45 51-74 (96)
309 3u7z_A Putative metal binding 22.0 39 0.0013 22.1 1.5 15 106-120 82-96 (101)
310 1oey_A P67-PHOX, neutrophil cy 21.6 1.3E+02 0.0044 18.8 4.0 28 19-46 12-39 (83)
311 3l2o_B F-box only protein 4; s 21.6 73 0.0025 25.0 3.3 26 21-46 283-308 (312)
312 3k9o_B Ubiquitin, UBB+1; E2-25 21.4 1.4E+02 0.0048 17.8 5.3 57 63-122 15-73 (96)
313 1dm9_A Hypothetical 15.5 KD pr 21.1 57 0.002 21.9 2.3 22 99-120 37-58 (133)
314 1qxy_A Methionyl aminopeptidas 21.0 80 0.0027 22.7 3.3 50 68-119 32-92 (252)
315 3s6b_A Methionine aminopeptida 20.8 99 0.0034 24.4 4.0 51 67-119 131-192 (368)
316 2qpt_A EH domain-containing pr 20.4 29 0.001 28.7 0.8 16 1-16 224-239 (550)
317 4a94_C Carboxypeptidase inhibi 20.1 47 0.0016 18.8 1.4 16 88-107 36-51 (53)
No 1
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=100.00 E-value=4.7e-39 Score=216.67 Aligned_cols=81 Identities=73% Similarity=1.201 Sum_probs=79.0
Q ss_pred HHhhccceEEeCCCCCCCCCcccEEE-eCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEE
Q psy2927 41 WEYLKLTRIYTKPKGQLPDYQSPVVL-HTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 41 ~~~L~~irvytk~~g~~pd~~~~~~l-~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i 119 (123)
|+.|++||||||++|+.||+.+|++| |+| +||+|+|++||++|.++|+||+|||+|+||+|||||++|+|+|||||+|
T Consensus 6 ~~~L~lIrVYtk~~G~~pd~~dpviL~~~G-sTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~I 84 (93)
T 2eki_A 6 SGYLKLVRIYTKPKGQLPDYTSPVVLPYSR-TTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQI 84 (93)
T ss_dssp SSSCCEEEEEECCTTSCCCSSSCEEEETTS-CCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECE
T ss_pred hhhcCeEEEEeCCCCCCCCCCCCEEEecCC-CCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEE
Confidence 78999999999999999999999999 887 9999999999999999999999999999999999999999999999999
Q ss_pred Eec
Q psy2927 120 VKK 122 (123)
Q Consensus 120 ~~~ 122 (123)
+++
T Consensus 85 v~~ 87 (93)
T 2eki_A 85 VKK 87 (93)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 2
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-35 Score=237.06 Aligned_cols=122 Identities=57% Similarity=1.067 Sum_probs=116.9
Q ss_pred CcccCCCCCHhhHHHHhcCCCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHh
Q psy2927 1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKL 80 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l~~~~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~I 80 (123)
++||+|.++.++++.+.+.++.+++|+..+.|+++|.+++|+.|+++++||+++++.|+++.|..++++++|+.|+|+.|
T Consensus 255 v~nKid~~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~~~~~~a~~at~~D~a~~i 334 (376)
T 4a9a_A 255 VLNKIDSLSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCNQI 334 (376)
T ss_dssp EEECGGGSCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHCCEEEEECCSSSCCCSSSCEEEBTTBCBHHHHHHHH
T ss_pred EEecccccCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcCCcEEEeCCCCCcCCCCccccccCCCCcHHHHHHHH
Confidence 47999999999988887778899999999999999999999999999999999999999999999998778999999999
Q ss_pred HHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 81 HRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 81 H~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
|+||.++|+||+|||+++|+.||++|+||+|+|||||+|++|
T Consensus 335 h~d~~~~F~~a~v~Gs~~K~~~r~eGkdyvv~DGDVi~iv~k 376 (376)
T 4a9a_A 335 HKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTILKK 376 (376)
T ss_dssp CGGGGGGEEEEEEESTTSSSSSEEECTTCBCCTTCEEEEEEC
T ss_pred HHHHHHhhhHhhhcCcccCCCCCccCCCcEEcCCCEEEEEeC
Confidence 999999999999999999999999999999999999999986
No 3
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.92 E-value=6.2e-26 Score=183.80 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=94.6
Q ss_pred CcccCC--CCC---HhhHHHHh-----cCCCeEEEeecC----------------------CcChHHHHHHHHHhhccce
Q psy2927 1 MQKVSD--QIS---IEELDIIY-----KIPHCVPLSAHH----------------------KWNFDDLLEKMWEYLKLTR 48 (123)
Q Consensus 1 V~NKiD--~~~---~e~l~~l~-----~~~~~v~ISA~~----------------------~~gld~L~e~i~~~L~~ir 48 (123)
|+||.| +.+ ...++.+. ...+++++||+. +.|++.|++++|+.|++++
T Consensus 207 v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~~~~L~li~ 286 (368)
T 2dby_A 207 VANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLT 286 (368)
T ss_dssp EEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTEEE
T ss_pred eccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHHHHHhCCEE
Confidence 478887 333 22333331 124689999876 4789999999999999999
Q ss_pred EEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecC----------CCCCCC--ceeCCCceecCCCe
Q psy2927 49 IYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGS----------SVKHQP--QKVGKEHVLNDEDV 116 (123)
Q Consensus 49 vytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~----------s~k~~~--q~vg~~~~l~d~Dv 116 (123)
+||.+ |+..+||++++| +|++++|++||+||+++|++|.||+. .+|..| |++|+||+|+||||
T Consensus 287 ~ft~g----~~e~~aw~i~~g-~ta~~~a~~IH~d~~~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi 361 (368)
T 2dby_A 287 FFTAG----EKEVRAWTVRRG-TKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDV 361 (368)
T ss_dssp EEEES----SSCEEEEEEETT-CBHHHHHHHHCHHHHHSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEE
T ss_pred EECCC----CCCcceEEecCC-CcHHHHHHhhHHHHHhhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCE
Confidence 99976 557889999998 99999999999999999999999972 266556 77899999999999
Q ss_pred EEEEe
Q psy2927 117 VQIVK 121 (123)
Q Consensus 117 v~i~~ 121 (123)
|+|.-
T Consensus 362 ~~~~f 366 (368)
T 2dby_A 362 IYVLF 366 (368)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99863
No 4
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.91 E-value=1.3e-25 Score=183.06 Aligned_cols=115 Identities=22% Similarity=0.355 Sum_probs=93.0
Q ss_pred CcccCCCCCHhhHHHHh-c----CCCeEEEeecCCcChHHH---------------------------------------
Q psy2927 1 MQKVSDQISIEELDIIY-K----IPHCVPLSAHHKWNFDDL--------------------------------------- 36 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l~-~----~~~~v~ISA~~~~gld~L--------------------------------------- 36 (123)
|+||+|+...+.++.+. . ...+++|||..+.|+++|
T Consensus 220 v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~~~e~ire~~l~~ 299 (397)
T 1wxq_A 220 AANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDR 299 (397)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHHHHTSS
T ss_pred EEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHHHHHHHHHHHHHH
Confidence 58999988555555542 1 235899999998887542
Q ss_pred ---------H-HHHHHhhccceEEeC--------CCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCC
Q psy2927 37 ---------L-EKMWEYLKLTRIYTK--------PKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSV 98 (123)
Q Consensus 37 ---------~-e~i~~~L~~irvytk--------~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~ 98 (123)
+ +++|+.|+++++||. ++|. +..++|+||+| +|++|+|++||+||.++|++|. ++
T Consensus 300 ~g~~g~~~~i~~~~~~~L~li~vft~~~~~~~~~~~g~--~~~~~~~l~~G-~t~~d~a~~iH~d~~~~f~~a~----~~ 372 (397)
T 1wxq_A 300 FGSTGVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGN--VLPHVFLMKKG-STPRDLAFKVHTDLGKGFLYAI----NA 372 (397)
T ss_dssp SSSCSHHHHHHHHHHTTSCEEEEEEESCC-----CCSC--SSCCCEEEETT-CCHHHHHHHHCHHHHHTEEEEE----ET
T ss_pred hCcchHHHHHHHHHHHHhCCeEEEeecccccccCCcCc--ccceeEEeCCC-CCHHHHHHHHhHHHHhhhhhhH----Hh
Confidence 2 477999999999993 4443 35569999998 9999999999999999999998 34
Q ss_pred CCCCceeCCCceecCCCeEEEEecC
Q psy2927 99 KHQPQKVGKEHVLNDEDVVQIVKKV 123 (123)
Q Consensus 99 k~~~q~vg~~~~l~d~Dvv~i~~~~ 123 (123)
+ .+||+|++|+|+|||||+|+++.
T Consensus 373 ~-~~~~~g~~~~l~dgDvv~i~~~~ 396 (397)
T 1wxq_A 373 R-TKRRVGEDYELQFNDIVKIVSVT 396 (397)
T ss_dssp T-TCSBCCTTCCCCTTEEEEEEEC-
T ss_pred c-CCEEcCCCccccCCCEEEEEeCC
Confidence 4 88999999999999999999863
No 5
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.90 E-value=1.8e-24 Score=175.36 Aligned_cols=116 Identities=18% Similarity=0.189 Sum_probs=93.8
Q ss_pred CcccCCCCC--HhhHHHHh----c-CCCeEEEeecC----------------------CcChHHHHHHHHHhhccceEEe
Q psy2927 1 MQKVSDQIS--IEELDIIY----K-IPHCVPLSAHH----------------------KWNFDDLLEKMWEYLKLTRIYT 51 (123)
Q Consensus 1 V~NKiD~~~--~e~l~~l~----~-~~~~v~ISA~~----------------------~~gld~L~e~i~~~L~~irvyt 51 (123)
|+||.|.-. .+.++.+. . ...+|++||.. +.|+++|++++|+.|+++++||
T Consensus 205 v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft 284 (363)
T 1jal_A 205 IANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFT 284 (363)
T ss_dssp EEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTTEEEEEE
T ss_pred EEecccccccccHHHHHHHHHHHHcCCCEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhCCEEEEC
Confidence 478888531 22333331 1 23589999764 3799999999999999999999
Q ss_pred CCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecC----------CCCCCC--ceeCCCceecCCCeEEE
Q psy2927 52 KPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGS----------SVKHQP--QKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 52 k~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~----------s~k~~~--q~vg~~~~l~d~Dvv~i 119 (123)
.++ +..+||++++| +|++++|++||+||+++|++|.||+. .+|..| |++|+||+|+|||||+|
T Consensus 285 ~g~----~e~raw~i~~G-~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii~f 359 (363)
T 1jal_A 285 AGV----KEVRAWTVSVG-ATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHF 359 (363)
T ss_dssp ECS----SEEEEEEEETT-CBHHHHHHTTCTTHHHHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEEEE
T ss_pred CCC----CCcceeEecCC-CcHHHHHHhhHHHHHhccEEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEEEE
Confidence 764 47889999998 99999999999999999999999972 266556 77899999999999998
Q ss_pred Ee
Q psy2927 120 VK 121 (123)
Q Consensus 120 ~~ 121 (123)
.-
T Consensus 360 ~f 361 (363)
T 1jal_A 360 RF 361 (363)
T ss_dssp ES
T ss_pred Ee
Confidence 64
No 6
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.89 E-value=3.3e-24 Score=175.50 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=86.2
Q ss_pred CeEEEeecCC---------------------cChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHH
Q psy2927 21 HCVPLSAHHK---------------------WNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNK 79 (123)
Q Consensus 21 ~~v~ISA~~~---------------------~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~ 79 (123)
.+|++||..+ .||+.|.+++|+.|+++++||+++ |..+||++++| +|++++|++
T Consensus 259 ~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~~~l~~li~~~~~~L~li~~fT~g~----~evrawti~~g-~ta~~aAg~ 333 (396)
T 2ohf_A 259 LVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQLEYFFTAGP----DEVRAWTIRKG-TKAPQAAGK 333 (396)
T ss_dssp EEEEECHHHHHHHHHSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEEESS----SEEEEEEEETT-CBHHHHHHT
T ss_pred eEEEEEcHHHHHHhhCCHHHHHHHHHHhCCCchHHHHHHHHHHHhCCEEEECCCC----CcceeEEecCC-CcHHHHHhh
Confidence 4899999864 569999999999999999999984 57899999998 999999999
Q ss_pred hHHHHHhhcceeEEe--------cC--CCCCCC--ceeCCCceecCCCeEEEE
Q psy2927 80 LHRTIAKEFKYALVW--------GS--SVKHQP--QKVGKEHVLNDEDVVQIV 120 (123)
Q Consensus 80 IH~d~~~~f~~A~vw--------g~--s~k~~~--q~vg~~~~l~d~Dvv~i~ 120 (123)
||+||+++|++|.|| |. .+|..| |++|+||+|+|||||+|-
T Consensus 334 IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii~f~ 386 (396)
T 2ohf_A 334 IHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFFK 386 (396)
T ss_dssp TCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEEEEE
T ss_pred hHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEEEEE
Confidence 999999999999999 64 466666 999999999999999994
No 7
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.87 E-value=4e-23 Score=168.73 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=84.0
Q ss_pred CeEEEeecC---------------------CcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHH
Q psy2927 21 HCVPLSAHH---------------------KWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNK 79 (123)
Q Consensus 21 ~~v~ISA~~---------------------~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~ 79 (123)
.+|++||.. +.|++.|+++.|+.|+++++||.++. ..++|++++| +|++++|+.
T Consensus 261 ~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~~L~l~~~ft~g~~----e~rawti~~G-~~a~~aag~ 335 (392)
T 1ni3_A 261 TLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNALNLINYFTCGED----EVRSWTIRKG-TKAPQAAGV 335 (392)
T ss_dssp CEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEECCSS----EEEEEEEETT-CBHHHHHHH
T ss_pred eEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHHHhCCEEEECCCCC----cceeEEeCCC-CcHHHHccc
Confidence 589999997 68999999999999999999998865 6789999998 999999999
Q ss_pred hHHHHHhhcceeEEe--------cCC--CCC-CCce-eCCCceecCCCeEEEE
Q psy2927 80 LHRTIAKEFKYALVW--------GSS--VKH-QPQK-VGKEHVLNDEDVVQIV 120 (123)
Q Consensus 80 IH~d~~~~f~~A~vw--------g~s--~k~-~~q~-vg~~~~l~d~Dvv~i~ 120 (123)
||+||+++|++|.|| |.. +|. ..+| .|++|+|+||||++|.
T Consensus 336 IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~~f~ 388 (392)
T 1ni3_A 336 IHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAHWK 388 (392)
T ss_dssp HCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEEECC
T ss_pred cchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEEEEE
Confidence 999999999999999 532 343 2355 9999999999999874
No 8
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=99.32 E-value=6.7e-12 Score=81.62 Aligned_cols=52 Identities=13% Similarity=0.270 Sum_probs=48.8
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
.+.+|+| +|+.|+|+.||+++.+++.+|.| .||.|+++|+|++||+|+|++.
T Consensus 17 ~~~lp~G-aT~~D~A~~Ih~~lg~~~v~AkV-------NG~~v~L~~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 17 VISLPIG-STVIDFAYAIHSAVGNRMIGAKV-------DGRIVPIDYKVKTGEIIDVLTT 68 (78)
T ss_dssp EEEEETT-CBHHHHHHHHCHHHHHTEEEEEE-------TTEEECTTCBCCTTCBEEEEEC
T ss_pred EEEecCC-CCHHHHHHHhhhhhhcceEEEEE-------CCEEcCCCcccCCCCEEEEEcc
Confidence 7899998 99999999999999999999987 5689999999999999999975
No 9
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=98.11 E-value=6.7e-06 Score=51.06 Aligned_cols=52 Identities=25% Similarity=0.237 Sum_probs=45.4
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
+..++.| +|+.|++..+|.++.+....|.| .|+.+.++++|++||.|+|++.
T Consensus 12 ~~~~~~g-~T~~dla~~i~~~l~~~~vaa~v-------Ng~lvdl~~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 12 IKRLPQG-ATALDFAYSLHSDLGDHCIGAKV-------NHKLVPLSYVLNSGDQVEVLSS 63 (73)
T ss_dssp EEEECTT-CBHHHHHHHHCSHHHHTEEEEEE-------TTEECCTTCBCCSSSBEEEEEC
T ss_pred EEEcCCC-CcHHHHHHHHhhccccceEEEEE-------CCEEeCCCcCcCCCCEEEEEEC
Confidence 6788897 99999999999999988766654 6788999999999999999874
No 10
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.07 E-value=2.1e-07 Score=77.08 Aligned_cols=116 Identities=15% Similarity=0.172 Sum_probs=72.3
Q ss_pred CcccCCCCCHhhHH-------HH-hc-----CCCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCC--CcccEE
Q psy2927 1 MQKVSDQISIEELD-------II-YK-----IPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPD--YQSPVV 65 (123)
Q Consensus 1 V~NKiD~~~~e~l~-------~l-~~-----~~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd--~~~~~~ 65 (123)
|+||+|+.+++.++ .+ .. ..+++++||.+|.|+++|++.|.+.++. ..++..+..++. .++.+.
T Consensus 131 viNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~-~~~~~~~~~~~~~~v~~v~~ 209 (482)
T 1wb1_A 131 VITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN-AEIIRNTESYFKMPLDHAFP 209 (482)
T ss_dssp EEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH-SCCCCCSSSCCBCBCSCEEC
T ss_pred EEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhcC-ccccccccccccccceeEEE
Confidence 58999998754322 11 11 1368999999999999999999998763 222322221110 122222
Q ss_pred Ee-----------CCCCCHHHHHHHhHHHHHhhcceeEEecCCC--CCCCceeCCCc------eecCCCeE
Q psy2927 66 LH-----------TDRRSIEDFCNKLHRTIAKEFKYALVWGSSV--KHQPQKVGKEH------VLNDEDVV 117 (123)
Q Consensus 66 l~-----------~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~--k~~~q~vg~~~------~l~d~Dvv 117 (123)
++ .|.-+++|.+...+.+..-+.+...+|+.+. ...||+||..+ .++.||++
T Consensus 210 ~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl 280 (482)
T 1wb1_A 210 IKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXIL 280 (482)
T ss_dssp CSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBC
T ss_pred ecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceE
Confidence 22 2223566666556666556777777887643 34789998764 47889987
No 11
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.98 E-value=5.5e-07 Score=73.75 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=76.5
Q ss_pred CcccCCCCCHhhHHHH----hcC-CCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCC-CCCCCcccEEEe-------
Q psy2927 1 MQKVSDQISIEELDII----YKI-PHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKG-QLPDYQSPVVLH------- 67 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l----~~~-~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g-~~pd~~~~~~l~------- 67 (123)
|+||+|+...+.++.+ ... ..++++||.+++|+++|.+.|++.+...+.++..+. -.|+...++.+.
T Consensus 275 VlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 354 (416)
T 1udx_A 275 ALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPPPEMPKPVPRKEVQAGVEVVPVAEGVY 354 (416)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSCCCCCCCCCC----CCCCEEEEEETTEE
T ss_pred EEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhcccccccccccccccCCCcEEEEcCCCeE
Confidence 5799998876444333 121 258999999999999999999999987665432111 001112244442
Q ss_pred --CCCCCHHHHHHHhHHHHHhhc-ceeEEecCCCCCCCceeCCCceecCCCeEEE
Q psy2927 68 --TDRRSIEDFCNKLHRTIAKEF-KYALVWGSSVKHQPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 68 --~g~~tv~d~a~~IH~d~~~~f-~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i 119 (123)
.| ..++.++.+.+-+-.+.+ .++..|.+..-...+ +++-+++||.|.|
T Consensus 355 ~v~g-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~l---~~~g~~~gd~v~i 405 (416)
T 1udx_A 355 EVRA-PEVERYLARIKGDLMEAAGYLQEVFRRQGVEAAL---RAKGVRAGDLVRI 405 (416)
T ss_dssp EEEC-HHHHHHHTTEEECTGGGHHHHHHHHHHTTHHHHH---HTTTCCTTCEEEE
T ss_pred EEeC-hHHHHHHHhcCCCCHHHHHHHHHHHHHCCHHHHH---HHcCCCCCCEEEE
Confidence 23 789999999988888887 678888643221112 5666899999988
No 12
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.32 E-value=0.00019 Score=49.93 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=33.9
Q ss_pred CcccCCCCCHhhHH----HH----hcC--CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEELD----II----YKI--PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~l~----~l----~~~--~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.+.+++. .+ ... ...+++||++|.|+++|.+.+.+.+.
T Consensus 139 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 139 VLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp EEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred EEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 57999998654322 12 121 36899999999999999999998874
No 13
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.26 E-value=0.00012 Score=49.39 Aligned_cols=45 Identities=29% Similarity=0.492 Sum_probs=33.9
Q ss_pred CcccCCCCCHh-hHHHHh--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIE-ELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e-~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+...+ +...+. .....+++||+++.|+++|.+.+.+.|+
T Consensus 114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 114 VATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp EEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHHHHHHHHHHCC
T ss_pred EEECcccccchHhHHHHHhCCCCCeEEEecccCCChHHHHHHHHHhCc
Confidence 57999987543 333332 2336899999999999999999988763
No 14
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.24 E-value=0.00021 Score=51.34 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=34.2
Q ss_pred CcccCCCCCHhhH----H----HHhc--------CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEEL----D----IIYK--------IPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~l----~----~l~~--------~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+....++ + .+.. ...++++||++|.|+++|.+.|.+.+..
T Consensus 150 v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 150 LLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred EEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 5899999876542 1 1212 1257899999999999999999998853
No 15
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.11 E-value=0.00036 Score=47.41 Aligned_cols=46 Identities=20% Similarity=0.116 Sum_probs=33.3
Q ss_pred CcccCCCCCHh-----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIE-----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e-----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+.+.. +...+. . ....+++||++|.|+++|.+.+.+.+..
T Consensus 112 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 112 VGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp EEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred EEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 57999987432 223332 2 2257889999999999999999987643
No 16
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.07 E-value=0.00021 Score=56.78 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=36.4
Q ss_pred CcccCCCCCHh-hHHHH-hcC---CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIE-ELDII-YKI---PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e-~l~~l-~~~---~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+...+ .++.+ ..+ ..++++||.+++|+++|++.|++.+..
T Consensus 280 V~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 280 VANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp EEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred EEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 58999998654 34555 222 358899999999999999999999864
No 17
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.06 E-value=0.00036 Score=48.22 Aligned_cols=45 Identities=18% Similarity=0.134 Sum_probs=32.4
Q ss_pred CcccCCCCCH---hhHHHH-h--cCC----CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI---EELDII-Y--KIP----HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~---e~l~~l-~--~~~----~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +++... . ... ..+++||++|.|+++|.+.+.+.+.
T Consensus 125 v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 125 FANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp EEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 5899998753 333322 1 111 4788999999999999999988764
No 18
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.04 E-value=0.0003 Score=55.53 Aligned_cols=46 Identities=13% Similarity=0.110 Sum_probs=34.4
Q ss_pred CcccCCCCCHhhH----HHHh------c------CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEEL----DIIY------K------IPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~l----~~l~------~------~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+...... ..+. . .++++++||.+|.|+++|.+.|.+.+..
T Consensus 223 VlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 223 VVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred EEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5899998754322 1221 1 2468999999999999999999998864
No 19
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.04 E-value=0.00034 Score=47.41 Aligned_cols=45 Identities=11% Similarity=0.014 Sum_probs=31.6
Q ss_pred CcccCCCCCH---hhHHH-Hh-c-C--C--CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI---EELDI-IY-K-I--P--HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~---e~l~~-l~-~-~--~--~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +++.. +. . . . ..+++||++|.|+++|.+.+.+.+.
T Consensus 107 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 107 FANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp EEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred EEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 5799998754 22321 11 1 1 1 3788999999999999999998764
No 20
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.02 E-value=0.00046 Score=48.30 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=33.8
Q ss_pred CcccCCCCCHhhH----HHH----hc--CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEEL----DII----YK--IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~l----~~l----~~--~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.+..++ +.+ .. ....+++||++|.|+++|.+.|.+.+.
T Consensus 140 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 140 IATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 5899999876443 222 11 235789999999999999999988764
No 21
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.01 E-value=0.00076 Score=46.81 Aligned_cols=45 Identities=9% Similarity=-0.053 Sum_probs=33.4
Q ss_pred CcccCCCCCH---hhHHHHh-c--CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI---EELDIIY-K--IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~---e~l~~l~-~--~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +++..+. . ....+++||++|.|+++|.+.+.+.+.
T Consensus 141 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 141 QVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp EEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred EEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 5799998643 4444442 2 226889999999999999999888663
No 22
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.00 E-value=0.00061 Score=46.03 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=32.8
Q ss_pred CcccCCCCCH-----hhHHHH-hcC--CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDII-YKI--PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l-~~~--~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... ++...+ ..+ ...+++||++|.|+++|.+.+.+.+
T Consensus 114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 114 VGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 5799998643 233334 222 3588999999999999999998876
No 23
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.00 E-value=0.00062 Score=47.87 Aligned_cols=45 Identities=16% Similarity=0.080 Sum_probs=33.7
Q ss_pred CcccCCCCCH-------hhHHHHh---cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-------EELDIIY---KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-------e~l~~l~---~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. ..+..+++||++|.|+++|.+.+.+.+.
T Consensus 133 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 133 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp EEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 5799998642 2333332 3345899999999999999999998764
No 24
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.00 E-value=0.00048 Score=46.90 Aligned_cols=46 Identities=22% Similarity=0.166 Sum_probs=33.6
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+... ++...+. .. ...+++||+++.|+++|.+.+.+.+..
T Consensus 115 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 115 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence 5799998633 2333332 22 257899999999999999999987754
No 25
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.99 E-value=0.00052 Score=53.14 Aligned_cols=46 Identities=28% Similarity=0.450 Sum_probs=35.5
Q ss_pred CcccCCCC-CHhhH----HHHh----cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQI-SIEEL----DIIY----KIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~-~~e~l----~~l~----~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+. +.+.+ +.+. .+..++++||.+|.|+++|.+.+.+.+..
T Consensus 128 V~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 128 VINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp EEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 58999998 54432 2331 23579999999999999999999998853
No 26
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.99 E-value=0.00033 Score=49.30 Aligned_cols=46 Identities=24% Similarity=0.193 Sum_probs=32.2
Q ss_pred CcccCCCCCH---hhHH-HHh-c-C----CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI---EELD-IIY-K-I----PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~---e~l~-~l~-~-~----~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+... +++. .+. . . ...+++||++|.|+++|.+.+.+.+..
T Consensus 130 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 130 LGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp EEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred EEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5799998743 2222 211 1 1 136889999999999999999987753
No 27
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.98 E-value=0.00036 Score=48.59 Aligned_cols=46 Identities=9% Similarity=-0.096 Sum_probs=33.0
Q ss_pred CcccCCCCCHh---hHHHH-h--cC----CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIE---ELDII-Y--KI----PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e---~l~~l-~--~~----~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+.... ++... . .. ...+++||+++.|+++|.+.+.+.+..
T Consensus 125 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 125 FANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp EEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 58999987542 22221 1 01 147889999999999999999988754
No 28
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.95 E-value=0.0003 Score=49.27 Aligned_cols=46 Identities=11% Similarity=-0.062 Sum_probs=33.1
Q ss_pred CcccCCCCCH---hhHH-HHh-----c-C-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI---EELD-IIY-----K-I-PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~---e~l~-~l~-----~-~-~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+... +++. .+. . . ..++++||+++.|+++|.+.|.+.+..
T Consensus 133 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 133 FANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp EEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 5799999855 3332 221 1 1 146889999999999999999987753
No 29
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.94 E-value=0.00058 Score=46.29 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=32.7
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.+. ++...+. . ....+++||+++.|+++|.+.|.+.+.
T Consensus 117 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 117 AGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred EEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 4699998753 2233332 2 235789999999999999999988763
No 30
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.94 E-value=0.00031 Score=47.84 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=32.4
Q ss_pred CcccCCCCCH---hhHHH-Hh-c-CC----CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI---EELDI-IY-K-IP----HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~---e~l~~-l~-~-~~----~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +++.. +. . .. ..+++||++|.|+++|.+.+.+.+.
T Consensus 114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 114 FANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp EEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHh
Confidence 5899999854 23322 21 1 11 4788999999999999999988764
No 31
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.93 E-value=0.00032 Score=49.26 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=32.5
Q ss_pred CcccCCCCCH---hhHHHHh---cC----CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI---EELDIIY---KI----PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~---e~l~~l~---~~----~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+... +++.... .+ -..+++||++|.|+++|.+.|.+.+..
T Consensus 132 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 132 FANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp EEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 5899999753 3333221 11 147889999999999999999988754
No 32
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.93 E-value=0.00042 Score=48.46 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=32.5
Q ss_pred CcccCCCCCH---hhHHH-Hh--cCC----CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI---EELDI-IY--KIP----HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~---e~l~~-l~--~~~----~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +++.. +. ... ..+++||+++.|+++|.+.+.+.+.
T Consensus 129 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 129 FANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp EEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHH
Confidence 5899999754 33322 11 111 3788999999999999999988774
No 33
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.93 E-value=0.001 Score=46.45 Aligned_cols=46 Identities=13% Similarity=-0.003 Sum_probs=33.9
Q ss_pred CcccCCCCCHh-----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIE-----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e-----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+.... +...+. . .-..+++||+++.|+++|.+.+.+.+..
T Consensus 127 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 127 VGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp EEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 57999987542 233332 2 2258999999999999999999887753
No 34
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.91 E-value=0.00046 Score=46.69 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=32.4
Q ss_pred CcccCCCCCH-----hhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+ ... -..+++||++|.|+++|.+.|.+.+.
T Consensus 117 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 117 SGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred EEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 4599998643 233333 222 24788999999999999999988764
No 35
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.91 E-value=0.0011 Score=45.40 Aligned_cols=44 Identities=14% Similarity=-0.003 Sum_probs=32.4
Q ss_pred CcccCCCCCH------hhHHHHh---cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI------EELDIIY---KIPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~------e~l~~l~---~~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... ++...+. .....+++||++|.|+++|.+.+.+.+
T Consensus 124 v~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 124 LGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp EEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 5799998532 2333442 223589999999999999999998765
No 36
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.90 E-value=0.0011 Score=44.33 Aligned_cols=44 Identities=11% Similarity=0.047 Sum_probs=32.7
Q ss_pred CcccCCCCCH----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... ++...+. . .-..+++||.++.|+++|.+.+.+.+
T Consensus 114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 114 VGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp EEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 5799998752 2333442 1 12589999999999999999998875
No 37
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.90 E-value=0.00077 Score=47.71 Aligned_cols=44 Identities=11% Similarity=0.111 Sum_probs=31.1
Q ss_pred CcccCCCCC---HhhHHHHhcC------------C--CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQIS---IEELDIIYKI------------P--HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~---~e~l~~l~~~------------~--~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.. .+++...... . ..+++||++|.|+++|.+.+.+.|
T Consensus 130 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 130 LGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp EEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred EEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 589999874 3344333111 1 378899999999999999887643
No 38
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.89 E-value=0.00027 Score=49.32 Aligned_cols=43 Identities=19% Similarity=0.072 Sum_probs=30.5
Q ss_pred CcccCCCCCH---hhHHHHh---cCC----CeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQISI---EELDIIY---KIP----HCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~~---e~l~~l~---~~~----~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|+||+|+... +++.... ... ..+++||++|.|+++|.+.|.+.
T Consensus 128 v~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 128 FANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp EEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred EEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 5899998753 3333221 111 47889999999999999988764
No 39
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.88 E-value=0.00068 Score=54.29 Aligned_cols=45 Identities=40% Similarity=0.476 Sum_probs=34.2
Q ss_pred CcccCCCCCHhhH----HHHh----c----CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEEL----DIIY----K----IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~l----~~l~----~----~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.+.++. +.+. . ...++++||.+|.|+++|++.|.+.+.
T Consensus 135 viNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 135 VQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 5799999876542 2221 1 225899999999999999999998764
No 40
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.87 E-value=0.00054 Score=48.62 Aligned_cols=45 Identities=16% Similarity=0.015 Sum_probs=32.0
Q ss_pred CcccCCCCCH---hhHHHH-h-c-C--C--CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI---EELDII-Y-K-I--P--HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~---e~l~~l-~-~-~--~--~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +++... . . . . ..+++||++|.|+++|.+.+.+.+.
T Consensus 136 v~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 136 FANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp EEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred EEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 5799998754 233221 1 1 1 1 3688999999999999999988763
No 41
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.87 E-value=0.00072 Score=47.27 Aligned_cols=45 Identities=22% Similarity=0.120 Sum_probs=32.8
Q ss_pred CcccCCCCCH---hhHHH-Hh--cCC----CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI---EELDI-IY--KIP----HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~---e~l~~-l~--~~~----~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +++.. +. .+. ..+++||++|.|+++|.+.+.+.+.
T Consensus 123 v~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 123 FANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp EEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred EEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 5899998753 33322 21 111 4788999999999999999998874
No 42
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.85 E-value=0.00093 Score=52.59 Aligned_cols=46 Identities=17% Similarity=0.095 Sum_probs=35.5
Q ss_pred CcccCCCCCHhhHHHH----h-cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEELDII----Y-KIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l----~-~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+.....++.. . ...+++++||.+|+|+++|.+.+.+.+..
T Consensus 286 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 286 VINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp EECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 5799999876554322 1 23358999999999999999999998753
No 43
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.84 E-value=0.00051 Score=48.21 Aligned_cols=45 Identities=13% Similarity=0.027 Sum_probs=31.4
Q ss_pred CcccCCCCCHh---hHHHH-h--cC----CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIE---ELDII-Y--KI----PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e---~l~~l-~--~~----~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.... ++... . .. -..+++||++|.|+++|.+.+.+.+.
T Consensus 123 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 123 FANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp EEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred EEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 57999987542 23221 1 11 13788999999999999999988764
No 44
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.84 E-value=0.0011 Score=45.52 Aligned_cols=45 Identities=18% Similarity=0.070 Sum_probs=33.4
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. . .-..+++||+++.|+++|.+.+.+.+.
T Consensus 122 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 122 LGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp EEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5799998743 2333332 1 125899999999999999999998775
No 45
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.83 E-value=0.0011 Score=45.79 Aligned_cols=47 Identities=13% Similarity=0.044 Sum_probs=34.4
Q ss_pred CcccCCCCCH----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927 1 MQKVSDQISI----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKLT 47 (123)
Q Consensus 1 V~NKiD~~~~----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~i 47 (123)
|+||+|+... +....+. . ....+++||.+|.|+++|.+.+.+.+...
T Consensus 115 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 115 VGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp EEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 5799998743 2333332 1 22589999999999999999999887643
No 46
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.83 E-value=0.0009 Score=45.65 Aligned_cols=45 Identities=20% Similarity=0.149 Sum_probs=32.7
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. .+ ...+++||++|.|+++|.+.|.+.+.
T Consensus 117 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 117 VGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp EEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 5899998753 2222221 11 25889999999999999999988764
No 47
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.82 E-value=0.00083 Score=45.60 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=32.5
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... ++...+. .. ...+++||++|.|+++|.+.+.+.+
T Consensus 117 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 117 VGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 5799998643 2333332 22 2578999999999999999998876
No 48
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.81 E-value=0.0005 Score=47.68 Aligned_cols=45 Identities=22% Similarity=0.437 Sum_probs=33.6
Q ss_pred CcccCCCCCH--hhHHHHh---cCC------CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI--EELDIIY---KIP------HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~--e~l~~l~---~~~------~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++.+.+. ..+ .++++||++|.|+++|.+.+.+.+.
T Consensus 128 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 128 AVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp EEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EeehHhccCcHHHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence 5899999854 2344442 222 3689999999999999999988774
No 49
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.81 E-value=0.0011 Score=47.31 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.0
Q ss_pred CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
..+++||++|.|+++|.+.+.+.+
T Consensus 174 ~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 174 EVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EEEECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc
Confidence 378899999999999999988765
No 50
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.81 E-value=0.0011 Score=46.70 Aligned_cols=45 Identities=4% Similarity=-0.034 Sum_probs=32.8
Q ss_pred CcccCCCC-------CHhhHHHH-hcC--CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQI-------SIEELDII-YKI--PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~-------~~e~l~~l-~~~--~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|.||+|+. ..++...+ ..+ ...+.+||++|.|+++|.+.+.+.+-
T Consensus 125 v~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 125 VGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp EEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred EEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 57999983 23344444 233 35788999999999999999888653
No 51
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=96.80 E-value=0.0014 Score=42.02 Aligned_cols=52 Identities=12% Similarity=0.094 Sum_probs=43.7
Q ss_pred cEEEeC-CCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 63 PVVLHT-DRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~-g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
..-++. | +|+.|+|..||..+.+...-|.| .|+-+.++++|++++.|+|++.
T Consensus 21 ~~~~~~~~-~T~~dia~~i~~~l~~~~vaakv-------Ng~l~dL~~~l~~d~~ve~vt~ 73 (88)
T 1wwt_A 21 QVDAESWK-TTPYQIACGISQGLADNTVIAKV-------NNVVWDLDRPLEEDCTLELLKF 73 (88)
T ss_dssp EEEEETTT-CCHHHHHHHSSTTTGGGCCCEEE-------SSSEECSSSCCCSSEEEEECSS
T ss_pred EEEcccCC-CCHHHHHHHhhhccccceEEEEE-------CCEEECCCcCcCCCCEEEEEeC
Confidence 455676 6 99999999999999988777765 5677889999999999999863
No 52
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.80 E-value=0.00064 Score=56.28 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=35.5
Q ss_pred CcccCCCCCHhhHH--HHhc--CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEELD--IIYK--IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~l~--~l~~--~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+......+ .+.. +.+++++||++|.|+++|.+.|.+.+.
T Consensus 349 V~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 349 VANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred EEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 58999998654432 2422 457899999999999999999999875
No 53
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.80 E-value=0.0011 Score=45.55 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=33.4
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +++..+. .. -..+++||++|.|+++|.+.|.+.+.
T Consensus 123 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 123 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp EEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred EEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799998643 2333332 22 24789999999999999999998774
No 54
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.79 E-value=0.00057 Score=46.90 Aligned_cols=46 Identities=20% Similarity=0.155 Sum_probs=33.4
Q ss_pred CcccCCCCCH--hhHH-HHhc-------C---CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI--EELD-IIYK-------I---PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~--e~l~-~l~~-------~---~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+... +++. .+.. + ...+++||++|.|+++|.+.+.+.+..
T Consensus 113 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 113 AINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp EEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred EEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence 5799998853 3332 2211 1 147889999999999999999988765
No 55
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.79 E-value=0.0012 Score=54.68 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=33.7
Q ss_pred CcccCCCCCH---hhHHHHhcC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI---EELDIIYKI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~---e~l~~l~~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +++..+... .+++++||++|.|+++|.+.|.+.+.
T Consensus 356 V~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 356 VINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp EEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred EEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5899998743 233333222 36899999999999999999999754
No 56
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.77 E-value=0.0012 Score=45.46 Aligned_cols=44 Identities=7% Similarity=-0.031 Sum_probs=31.8
Q ss_pred CcccCCCC-------CHhhHHHH-hc--CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQI-------SIEELDII-YK--IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~-------~~e~l~~l-~~--~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+. ..++...+ .. ....+.+||++|.|+++|.+.+.+.+
T Consensus 114 v~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 114 VGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp EEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHH
Confidence 57999983 23344444 22 22578899999999999999888765
No 57
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.76 E-value=0.00095 Score=52.44 Aligned_cols=45 Identities=13% Similarity=0.230 Sum_probs=33.8
Q ss_pred CcccCCCCCHhhHH----HHh------c------CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEELD----IIY------K------IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~l~----~l~------~------~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.....+. .+. . .+.++++||.+|.|+++|.+.|.+.+.
T Consensus 200 v~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 200 VINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp EECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 58999998653321 221 1 345789999999999999999999775
No 58
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.75 E-value=0.00083 Score=45.95 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=33.0
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. . ....+++||++|.|+++|.+.+.+.+.
T Consensus 120 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 5899998653 2233332 2 225788999999999999999988774
No 59
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.75 E-value=0.00087 Score=47.23 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=33.3
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +++..+. .. ..++++||+++.|+++|.+.|.+.+.
T Consensus 134 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 134 AGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred EEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 5799998642 2334442 22 24788999999999999999998764
No 60
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.74 E-value=0.0015 Score=44.70 Aligned_cols=45 Identities=13% Similarity=0.063 Sum_probs=32.6
Q ss_pred CcccCCCCCH-----hhHHHHh--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. .....+++||.+|.|+++|.+.+.+.+.
T Consensus 119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 119 VGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVL 170 (181)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799997643 2222331 1236899999999999999999988764
No 61
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.74 E-value=0.00068 Score=45.85 Aligned_cols=44 Identities=16% Similarity=0.121 Sum_probs=32.2
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... +++..+. . .-..+++||.++.|+++|.+.+.+.+
T Consensus 115 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 115 VQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp EEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred EEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 5799998643 2333332 1 12588999999999999999998765
No 62
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.73 E-value=0.0012 Score=45.30 Aligned_cols=45 Identities=11% Similarity=-0.153 Sum_probs=33.0
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. . .-..+++||++|.|+++|.+.+.+.+.
T Consensus 121 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 121 VGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp EEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred EEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5799998642 3333332 1 124789999999999999999988764
No 63
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=96.73 E-value=0.0022 Score=42.71 Aligned_cols=61 Identities=15% Similarity=0.283 Sum_probs=40.9
Q ss_pred eEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhc-------ceeEEecCCCCCCCceeCCCceecCCCeEEEE
Q psy2927 48 RIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEF-------KYALVWGSSVKHQPQKVGKEHVLNDEDVVQIV 120 (123)
Q Consensus 48 rvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f-------~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~ 120 (123)
.+|.-+..+ ...++-++.| +|+.|+... ..+...| .--.|+|+ .+..+++|+|||.|+|+
T Consensus 17 v~ya~p~rq---~~~~~~v~~g-~TV~daI~~--~gi~~~~peIdl~~~~V~Vng~-------~v~~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 17 IAYAFPERY---YLKSFQVDEG-ITVQTAITQ--SGILSQFPEIDLSTNKIGIFSR-------PIKLTDVLKEGDRIEIY 83 (97)
T ss_dssp EEEEETTEE---EEEEEEEETT-CBHHHHHHH--HTHHHHCTTCCTTTSEEEEEEC-------SCCTTCBCCTTCEEEEC
T ss_pred EEEeCCCCC---EEEEEEcCCC-CcHHHHHHH--cCCCccCCcccccccEEEEcCE-------ECCCCccCCCCCEEEEE
Confidence 446654433 3447788897 999999866 3454555 22344553 34489999999999996
Q ss_pred e
Q psy2927 121 K 121 (123)
Q Consensus 121 ~ 121 (123)
.
T Consensus 84 r 84 (97)
T 2hj1_A 84 R 84 (97)
T ss_dssp C
T ss_pred e
Confidence 4
No 64
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.72 E-value=0.0017 Score=45.49 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=21.6
Q ss_pred CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
..+++||++|.|+++|.+.+.+.+
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999988764
No 65
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.72 E-value=0.0016 Score=44.07 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=32.6
Q ss_pred CcccCCCCCH----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. . .-..+++||++|.|+++|.+.+.+.+.
T Consensus 114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 114 VGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp EEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799998432 2333332 1 125899999999999999999988764
No 66
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.70 E-value=0.00068 Score=48.51 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=21.3
Q ss_pred CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
.++++||++|.|+++|.+.+.+.+
T Consensus 180 ~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 180 KYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHh
Confidence 488999999999999999998754
No 67
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.69 E-value=0.0017 Score=46.42 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=33.0
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +++..+. . .-..+++||+++.|+++|.+.|.+.+.
T Consensus 147 V~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 147 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred EEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899998643 2333332 2 225899999999999999999988764
No 68
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.69 E-value=0.0015 Score=44.59 Aligned_cols=44 Identities=16% Similarity=0.043 Sum_probs=32.1
Q ss_pred CcccCCCCCH-----hhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... +++..+ ... -..+++||+++.|+++|.+.+.+.+
T Consensus 126 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 126 IGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5799998643 233333 222 2478999999999999999988765
No 69
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.69 E-value=0.00082 Score=45.21 Aligned_cols=44 Identities=20% Similarity=0.110 Sum_probs=32.0
Q ss_pred CcccCCCCCH-----hhHHHH-hc-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDII-YK-IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l-~~-~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.+. ++...+ .. ....+++||.+|.|+++|.+.+.+.+
T Consensus 115 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 115 VGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 5899998643 223333 11 12588999999999999999998765
No 70
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.69 E-value=0.00098 Score=46.63 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=32.3
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... ++...+. .+ -..+++||++|.|+++|.+.|.+.+
T Consensus 133 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 133 VGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5899998643 2333332 11 2588999999999999999998875
No 71
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.68 E-value=0.0012 Score=45.48 Aligned_cols=45 Identities=20% Similarity=0.083 Sum_probs=32.9
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +++..+. . .-..+++||+++.|+++|.+.|.+.+.
T Consensus 133 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799998642 2333332 1 125899999999999999999988763
No 72
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.68 E-value=0.0019 Score=51.48 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=33.8
Q ss_pred CcccCCCCCHh----hHH-H----Hhc--C--CCeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927 1 MQKVSDQISIE----ELD-I----IYK--I--PHCVPLSAHHKWNFDDLLEKMWEYLKLT 47 (123)
Q Consensus 1 V~NKiD~~~~e----~l~-~----l~~--~--~~~v~ISA~~~~gld~L~e~i~~~L~~i 47 (123)
|+||+|+++.+ .+. . +.. + .+++++||.+|+|+++|.+.+.+.+...
T Consensus 104 V~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~~ 163 (369)
T 3ec1_A 104 VGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGG 163 (369)
T ss_dssp EEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTTS
T ss_pred EEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcccC
Confidence 58999998542 221 1 111 2 2578999999999999999999877543
No 73
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.67 E-value=0.002 Score=44.09 Aligned_cols=44 Identities=16% Similarity=0.002 Sum_probs=32.7
Q ss_pred CcccCCCCC----HhhHHHHh---cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQIS----IEELDIIY---KIPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~----~e~l~~l~---~~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.. .+++..+. .....+++||++|.|+++|.+.+.+.+
T Consensus 122 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 122 LGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp EEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 579999863 23344442 223689999999999999999998875
No 74
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.67 E-value=0.0013 Score=47.09 Aligned_cols=46 Identities=11% Similarity=-0.016 Sum_probs=32.2
Q ss_pred CcccCCCCCHhh-----HHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEE-----LDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~-----l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+..... ...+. . ....+++||++|.|+++|.+.+.+.+..
T Consensus 123 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 123 CANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp EEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHC
T ss_pred EEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 589999875422 22332 1 1248899999999999999999988754
No 75
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.66 E-value=0.0013 Score=44.50 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=33.2
Q ss_pred CcccCCCCCHh-----hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIE-----ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e-----~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+.... +...+. .. ...+++||.+|.|+++|.+.|.+.+..
T Consensus 115 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 115 VGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred EEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 57999986432 222231 11 247899999999999999999987753
No 76
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.64 E-value=0.0016 Score=45.18 Aligned_cols=46 Identities=15% Similarity=-0.056 Sum_probs=33.0
Q ss_pred CcccCCCCCH----hhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI----EELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~----e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+... ++...+ ... ...+++||+++.|+++|.+.+.+.+..
T Consensus 127 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 127 VGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp EEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 5799998532 233333 222 247889999999999999999987753
No 77
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.64 E-value=0.00096 Score=55.01 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=36.1
Q ss_pred CcccCCCCCHhhHHHHh---cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEELDIIY---KIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l~---~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+........+. ...+.+++||++|.|+++|.+.|.+.+..
T Consensus 336 V~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 336 VMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp EEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred EEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 58999998765543322 23468999999999999999999998864
No 78
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.62 E-value=0.0021 Score=45.51 Aligned_cols=46 Identities=15% Similarity=0.005 Sum_probs=33.6
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+... ++...+. . .-..+++||.+|.|+++|.+.+.+.+..
T Consensus 119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 119 VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp EEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5899998753 2333332 2 2258999999999999999999887653
No 79
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.60 E-value=0.00074 Score=48.53 Aligned_cols=45 Identities=7% Similarity=0.079 Sum_probs=32.5
Q ss_pred CcccCCCCCH-----hhHH-HHhc---CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELD-IIYK---IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~-~l~~---~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.+. +++. .+.. ...++++||.+|.|+++|.+.+.+.+.
T Consensus 160 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 160 VINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp EEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred EEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 5899998643 2222 2221 235889999999999999999998774
No 80
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.59 E-value=0.0011 Score=52.97 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=32.8
Q ss_pred CcccCCCCCHh----hHHH----H-h--cCC--CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIE----ELDI----I-Y--KIP--HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e----~l~~----l-~--~~~--~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+++.+ .+.. . . .++ +++.+||.+|+|+++|.+.+.+.+.
T Consensus 102 V~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 102 VGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp EEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 68999998543 2221 1 1 222 5788999999999999999988764
No 81
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.59 E-value=0.0016 Score=44.39 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=32.7
Q ss_pred CcccCCCCCHh-----hHHHH-hc-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIE-----ELDII-YK-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e-----~l~~l-~~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.... +...+ .. ....+++||+++.|+++|.+.|.+.+.
T Consensus 125 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 125 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred EEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 58999986432 22222 11 235789999999999999999988764
No 82
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.59 E-value=0.00079 Score=45.25 Aligned_cols=45 Identities=18% Similarity=0.066 Sum_probs=32.5
Q ss_pred CcccCCCCCHh-----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIE-----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e-----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.... +...+. . .-..+++||++|.|+++|.+.+.+.+.
T Consensus 114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 114 VGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred EEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 58999986432 223331 1 125899999999999999999988763
No 83
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.59 E-value=0.0014 Score=46.74 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=33.1
Q ss_pred CcccCCCCCH-----hhHHHH-h--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDII-Y--KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l-~--~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +++..+ . .....+++||+++.|+++|.+.|.+.+.
T Consensus 140 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 140 IGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192 (201)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5799998642 334444 2 2225789999999999999999988764
No 84
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.59 E-value=0.00011 Score=51.53 Aligned_cols=45 Identities=13% Similarity=0.068 Sum_probs=30.8
Q ss_pred CcccCCCCCHh-hHHHHhcCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIE-ELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e-~l~~l~~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+.... +... ......+++||++|.|+++|.+.|.+.+..
T Consensus 121 v~NK~Dl~~~~~~~~~-~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 121 VRNKADITGETLGMSE-VNGHALIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp EEECHHHHCCCCEEEE-ETTEEEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred EEECccCCcchhhhhh-ccCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 57999975321 1100 011247889999999999999999998754
No 85
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.58 E-value=0.0015 Score=51.11 Aligned_cols=45 Identities=11% Similarity=-0.099 Sum_probs=32.5
Q ss_pred CcccCCCCCHhhHHHH----h-cC-----CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEELDII----Y-KI-----PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l----~-~~-----~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+......+.+ . .. ..++++||++|.|+++|.+.|.+.+.
T Consensus 272 V~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 272 FANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp EEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred EEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 5799998754322222 1 11 13788999999999999999998774
No 86
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.58 E-value=0.00075 Score=45.60 Aligned_cols=45 Identities=18% Similarity=0.071 Sum_probs=32.1
Q ss_pred CcccCCCCCH--------hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI--------EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~--------e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. . .-..+++||+++.|+++|.+.+.+.+.
T Consensus 114 v~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 114 VGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp EEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred EEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 5799998643 1222331 1 125789999999999999999988763
No 87
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.58 E-value=0.0024 Score=44.89 Aligned_cols=45 Identities=9% Similarity=-0.024 Sum_probs=33.0
Q ss_pred CcccCCCCCH----hhHHHHh---cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI----EELDIIY---KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~----e~l~~l~---~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. .....+++||++|.|+++|.+.|.+.+.
T Consensus 123 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 123 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp EEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5899998732 2333332 1235899999999999999999988764
No 88
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.57 E-value=0.0015 Score=45.11 Aligned_cols=45 Identities=13% Similarity=0.044 Sum_probs=27.7
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. . .-..+++||+++.|+++|.+.+.+.+.
T Consensus 119 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 119 LGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp EEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHH
T ss_pred EEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5799998642 3333332 1 124789999999999999999888764
No 89
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.56 E-value=0.0018 Score=45.48 Aligned_cols=45 Identities=11% Similarity=0.063 Sum_probs=32.2
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. . .-..+++||++|.|+++|.+.+.+.+.
T Consensus 134 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 134 VGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAIC 185 (191)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799998533 2233332 1 125789999999999999999888763
No 90
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.54 E-value=0.0023 Score=44.58 Aligned_cols=46 Identities=9% Similarity=0.076 Sum_probs=33.8
Q ss_pred CcccCCCCC----HhhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQIS----IEELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~----~e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+.. .+++..+. .+ -..+++||.++.|+++|.+.|.+.+..
T Consensus 132 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 132 VGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp EEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 579999874 23344442 21 258999999999999999999887643
No 91
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.54 E-value=0.0013 Score=46.37 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=32.3
Q ss_pred CcccCCCCCH-----hhHHHHh-cC--CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI--PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~--~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... ++...+. .+ ...+++||++|.|+++|.+.|.+.+
T Consensus 137 V~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 137 VGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5899998643 2333442 22 2578899999999999999988765
No 92
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.54 E-value=0.0011 Score=45.58 Aligned_cols=24 Identities=8% Similarity=0.140 Sum_probs=21.7
Q ss_pred CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
..+++||++|.|+++|.+.+.+.+
T Consensus 156 ~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 156 AYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999998765
No 93
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.54 E-value=0.001 Score=54.21 Aligned_cols=46 Identities=13% Similarity=-0.030 Sum_probs=32.8
Q ss_pred CcccCCCCCH---hhHHHHhcC-------CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI---EELDIIYKI-------PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~---e~l~~l~~~-------~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+... +++...... ..++++||++|.|+++|++.|.+.+..
T Consensus 429 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 429 FANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp EEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC-
T ss_pred EEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899998743 333222111 137889999999999999999998753
No 94
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.52 E-value=0.0011 Score=45.69 Aligned_cols=46 Identities=13% Similarity=-0.000 Sum_probs=33.8
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+... ++...+. .. -..+++||+++.|+++|.+.+.+.+..
T Consensus 117 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 117 VGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp EEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred EEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 5799998633 3333342 22 247889999999999999999998754
No 95
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.52 E-value=0.0017 Score=45.55 Aligned_cols=46 Identities=20% Similarity=0.120 Sum_probs=33.4
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+... +++..+. . ...++++||.+|.|+++|.+.|.+.+..
T Consensus 125 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 125 VGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5899998643 2233331 1 1258899999999999999999887754
No 96
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.51 E-value=0.0018 Score=47.81 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=23.6
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
..+++||++++|+++|.+.|.+.+..
T Consensus 232 ~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 232 RVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp CCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cceEEEecCcccHHHHHHHHHHHhcc
Confidence 58999999999999999999988754
No 97
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.49 E-value=0.0028 Score=44.23 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=34.2
Q ss_pred CcccCCCCCH----hhHHHH-hc-CCCeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927 1 MQKVSDQISI----EELDII-YK-IPHCVPLSAHHKWNFDDLLEKMWEYLKLT 47 (123)
Q Consensus 1 V~NKiD~~~~----e~l~~l-~~-~~~~v~ISA~~~~gld~L~e~i~~~L~~i 47 (123)
|+||+|+... ++...+ .. ....+++||.+|.|+++|.+.+.+.+...
T Consensus 120 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 120 VGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp EEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred EEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 5899998742 223333 12 12478999999999999999999987654
No 98
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.49 E-value=0.0028 Score=43.73 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=30.7
Q ss_pred CcccCCCCC----HhhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQIS----IEELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~----~e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.. .+++..+ ... -..+++||+++.|+++|.+.|.+.+
T Consensus 153 v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 153 VANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp EEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 589999321 1333333 222 2578999999999999999988765
No 99
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.48 E-value=0.0018 Score=45.29 Aligned_cols=44 Identities=18% Similarity=0.077 Sum_probs=31.9
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... ++...+. . .-..+++||+++.|+++|.+.|.+.+
T Consensus 136 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 136 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5799998643 2233332 2 12478899999999999999988765
No 100
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.48 E-value=0.0021 Score=44.15 Aligned_cols=45 Identities=20% Similarity=0.135 Sum_probs=32.6
Q ss_pred CcccCCCCCH-----hhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... +++..+ ... ..++++||+++.|+++|.+.|.+.+.
T Consensus 129 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 129 VGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 180 (187)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 5799998643 223333 222 25789999999999999999988764
No 101
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.47 E-value=0.00056 Score=53.10 Aligned_cols=46 Identities=13% Similarity=-0.010 Sum_probs=34.9
Q ss_pred CcccCCCCCHhh-HHH-Hh---cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEE-LDI-IY---KIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~-l~~-l~---~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+...+. +.. +. .+.+.+++||.+|.|+++|.+.+.+.++.
T Consensus 123 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 123 VGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp EEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred EEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 589999986544 322 22 23358999999999999999999998753
No 102
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.46 E-value=0.0019 Score=46.42 Aligned_cols=45 Identities=13% Similarity=-0.011 Sum_probs=32.6
Q ss_pred CcccCCCCCH-----hhHHHHh--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. ..-..+++||++|.|+++|.+.+.+.+.
T Consensus 137 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 137 VGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp EEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5799998643 2333332 1235899999999999999999888764
No 103
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.45 E-value=0.002 Score=45.16 Aligned_cols=44 Identities=18% Similarity=0.052 Sum_probs=31.5
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... ++...+. . .-..+++||+++.|+++|.+.|.+.+
T Consensus 132 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 132 IGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5799998642 2333332 1 12478899999999999998887765
No 104
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.44 E-value=0.0008 Score=46.34 Aligned_cols=25 Identities=8% Similarity=0.112 Sum_probs=22.6
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
..+++||++|.|+++|.+.+.+.+.
T Consensus 155 ~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 155 KYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEEecCCCccCHHHHHHHHHHHHh
Confidence 5789999999999999999998774
No 105
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.44 E-value=0.0024 Score=51.18 Aligned_cols=45 Identities=24% Similarity=0.411 Sum_probs=27.4
Q ss_pred CcccCCCCCHhh----HHH---H-hc----CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEE----LDI---I-YK----IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~----l~~---l-~~----~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.+.++ .++ + .. ...++++||.+|.|+++|++.|.+.+.
T Consensus 141 v~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 141 VQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp EEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred EEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 579999985432 222 2 11 225899999999999999999998765
No 106
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.43 E-value=0.0022 Score=45.49 Aligned_cols=24 Identities=17% Similarity=0.005 Sum_probs=21.3
Q ss_pred CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
..+++||++|.|+++|.+.|.+.+
T Consensus 175 ~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 175 GYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHH
Confidence 478899999999999999988764
No 107
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.43 E-value=0.0033 Score=44.74 Aligned_cols=45 Identities=20% Similarity=0.140 Sum_probs=33.3
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|.||+|+... ++...+. .. -..+.+||+++.|+++|.+.+.+.+.
T Consensus 136 v~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 136 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIR 187 (195)
T ss_dssp EEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 5799998643 2333342 22 25788999999999999999998774
No 108
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.42 E-value=0.00078 Score=46.46 Aligned_cols=44 Identities=20% Similarity=0.152 Sum_probs=31.8
Q ss_pred CcccCCCCCHh----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIE----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|.||+|+.... +.+.+. . ....+++||++|.|+++|.+.+.+.+
T Consensus 114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 114 ALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp EEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred EEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 57999975321 233332 1 12589999999999999999998865
No 109
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.42 E-value=0.0016 Score=46.88 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=21.7
Q ss_pred CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
..+++||++|.|+++|.+.+.+.+
T Consensus 184 ~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 184 AYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCHHHHHHHHHHHH
Confidence 578999999999999999998875
No 110
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.41 E-value=0.0042 Score=42.80 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=32.8
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeec-CCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAH-HKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~-~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. . .-..+++||+ ++.|+++|.+.+.+.+.
T Consensus 129 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 129 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp EEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred EEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 5799998642 3333332 1 2358999999 99999999999988763
No 111
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.40 E-value=0.0023 Score=45.10 Aligned_cols=45 Identities=13% Similarity=0.044 Sum_probs=32.1
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. . .-..+++||++|.|+++|.+.|.+.+.
T Consensus 119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 119 VGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp EEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred EEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799998753 2233332 1 125889999999999999988887653
No 112
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=96.37 E-value=0.0059 Score=45.44 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=45.4
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
..-++.| +|+.|+|..||..+.+...-|.| .|+-+.+++.|++++.|+|++.
T Consensus 11 ~~~~~~g-~T~~dia~~i~~~l~~~~vaakv-------Ng~l~dL~~~l~~~~~ve~it~ 62 (224)
T 1tke_A 11 QRHYDHA-VSPMDVALDIGPGLAKACIAGRV-------NGELVDACDLIENDAQLSIITA 62 (224)
T ss_dssp EEECSSC-BCHHHHHHHHCHHHHHHCCEEEE-------TTEEEETTCCBCSCEEEEEECT
T ss_pred EEEecCC-CCHHHHHHHHhhhcccceEEEEE-------CCEEeccceEcCCCCeEEEEec
Confidence 5678887 99999999999999999888876 5677889999999999999864
No 113
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.36 E-value=0.0013 Score=46.22 Aligned_cols=44 Identities=9% Similarity=-0.077 Sum_probs=23.0
Q ss_pred CcccCCCCC-H-----hhHHHH-hcC-CCeEEEeecC-CcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQIS-I-----EELDII-YKI-PHCVPLSAHH-KWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~-~-----e~l~~l-~~~-~~~v~ISA~~-~~gld~L~e~i~~~L 44 (123)
|+||+|+.. . ++...+ ..+ ...+++||++ +.|+++|.+.|.+.+
T Consensus 138 v~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 138 VANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp EEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHH
T ss_pred EEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 589999876 2 333333 222 2578899999 999999999888865
No 114
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=96.36 E-value=0.0028 Score=50.68 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=33.9
Q ss_pred CcccCCCCCHhh----HHHH----hc----CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEE----LDII----YK----IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~----l~~l----~~----~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.+.++ .+++ .. ..+++++||.+|.|+++|++.|.+.++
T Consensus 143 viNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 143 AQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 589999987543 2222 11 225899999999999999999998765
No 115
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.36 E-value=0.0013 Score=52.08 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=33.8
Q ss_pred CcccCCCCCHhh----HHHHh------------cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEE----LDIIY------------KIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~----l~~l~------------~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+.+... +..+. ..++++++||.+|.|+++|.+.|.+.+..
T Consensus 218 VlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 218 AVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp EECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 579999875432 22221 02457899999999999999999998753
No 116
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.35 E-value=0.0019 Score=49.68 Aligned_cols=45 Identities=7% Similarity=0.057 Sum_probs=34.8
Q ss_pred CcccCCCCCHhhHHHH----hc-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEELDII----YK-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l----~~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+++.+..+.. .. ..+++++||.++.|+++|.+.+.+.+.
T Consensus 56 VlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 56 LLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp EEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 5899999987554332 12 125889999999999999999888775
No 117
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.33 E-value=0.0016 Score=47.32 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=34.2
Q ss_pred CcccCCCCCHhh--------HHHHh-cC---CCeEEEeecCCcChHHHHHHHHHhhccce
Q psy2927 1 MQKVSDQISIEE--------LDIIY-KI---PHCVPLSAHHKWNFDDLLEKMWEYLKLTR 48 (123)
Q Consensus 1 V~NKiD~~~~e~--------l~~l~-~~---~~~v~ISA~~~~gld~L~e~i~~~L~~ir 48 (123)
|+||+|+..... +..+. .. ...+++||++|.|+++|.+.|.+.+...+
T Consensus 148 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 148 GFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp EEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 589999975422 22221 22 35789999999999999999999876543
No 118
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.32 E-value=0.00062 Score=48.27 Aligned_cols=45 Identities=13% Similarity=0.066 Sum_probs=27.7
Q ss_pred CcccCCCCCHh-----hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIE-----ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e-----~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.... +...+. .+ -..+++||+++.|+++|.+.|.+.+.
T Consensus 144 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 144 VGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp C-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred EEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999987542 222332 21 25788999999999999999988764
No 119
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.32 E-value=0.0012 Score=47.63 Aligned_cols=45 Identities=20% Similarity=0.148 Sum_probs=32.3
Q ss_pred CcccCCCCCH-----hhHHHH-hc---CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDII-YK---IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l-~~---~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.+. +++... .. ...++++||.+|.|+++|.+.+.+.+.
T Consensus 170 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 170 VINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp EEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 5799998643 222222 21 235788999999999999999988764
No 120
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.30 E-value=0.0026 Score=49.12 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=35.0
Q ss_pred CcccCCCCC-HhhH----HHHh-cC--CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQIS-IEEL----DIIY-KI--PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~-~e~l----~~l~-~~--~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+.. .+.+ +.+. .+ +..+++||+++.|+++|.+.+.+.++.
T Consensus 122 vlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 122 AVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp EEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred EEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 579999986 4433 3332 22 358999999999999999999998764
No 121
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.30 E-value=0.0029 Score=45.07 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=21.7
Q ss_pred CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
..+++||++|.|+++|.+.|.+.+
T Consensus 175 ~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 175 DYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHH
Confidence 478899999999999999998875
No 122
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.27 E-value=0.0037 Score=44.37 Aligned_cols=45 Identities=13% Similarity=-0.093 Sum_probs=32.0
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. .. -..+++||++|.|+++|.+.+.+.+.
T Consensus 136 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 136 CGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred EEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5799998643 2233332 22 24788999999999999999888663
No 123
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.25 E-value=0.0039 Score=44.04 Aligned_cols=46 Identities=11% Similarity=0.079 Sum_probs=32.7
Q ss_pred CcccCCCCCH----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+... ++...+. . .-.++++||.++.|+++|.+.|.+.+..
T Consensus 131 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 131 VGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp EEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred EEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5899998422 2333332 1 1258999999999999999998887643
No 124
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.25 E-value=0.0024 Score=44.90 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=21.5
Q ss_pred CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
..+++||++|.|+++|.+.+.+.+
T Consensus 170 ~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 170 SYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHH
Confidence 578999999999999999988765
No 125
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=96.20 E-value=0.0038 Score=46.69 Aligned_cols=44 Identities=14% Similarity=0.057 Sum_probs=32.8
Q ss_pred CcccCCCCCHhhH---HHHh-c--CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEEL---DIIY-K--IPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~l---~~l~-~--~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+.....+ ..+. . .-..+.+||+++.|+++|.+.|.+.+
T Consensus 204 V~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 204 VLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp EEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799998765433 2332 2 22578899999999999999998865
No 126
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.18 E-value=0.0024 Score=45.20 Aligned_cols=45 Identities=11% Similarity=-0.057 Sum_probs=31.5
Q ss_pred CcccCCCCCH-----------hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----------EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----------e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. . ....+++||++|.|+++|.+.+.+.+.
T Consensus 139 v~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 139 VGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp EEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 5799998521 2222331 1 124788999999999999999988763
No 127
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.18 E-value=0.0037 Score=45.80 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=31.8
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|.||+|+... ++...+. .+ -..+.+||++|.|+++|.+.+.+.+.
T Consensus 151 VgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5799998632 2222221 11 24788999999999999999988764
No 128
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.13 E-value=0.0041 Score=42.88 Aligned_cols=45 Identities=11% Similarity=-0.104 Sum_probs=31.8
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. .. -..+++||++|.|+++|.+.+.+.+.
T Consensus 121 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 121 CGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 5799998643 2233332 22 24788999999999999998887653
No 129
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.12 E-value=0.0046 Score=48.66 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=24.3
Q ss_pred CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 19 IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 19 ~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
.++++++||.++.|+++|.+.|.+.+.
T Consensus 234 ~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 234 TPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999875
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.12 E-value=0.0022 Score=51.83 Aligned_cols=46 Identities=24% Similarity=0.430 Sum_probs=34.1
Q ss_pred CcccCCCCCH--hhH-HHHh--cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI--EEL-DIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~--e~l-~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+... .+. ..+. .+.+.+++||.+|.|+++|++.+.+.+..
T Consensus 116 v~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 116 VANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp EEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 5899997643 122 2332 34468999999999999999999998853
No 131
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.0041 Score=44.85 Aligned_cols=46 Identities=20% Similarity=0.123 Sum_probs=32.3
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+... ++...+. .. -..+++||+++.|+++|.+.+.+.+..
T Consensus 124 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 124 IGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp EECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred EEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5799998643 2333332 22 247889999999999999999887653
No 132
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.06 E-value=0.0021 Score=45.48 Aligned_cols=46 Identities=11% Similarity=-0.008 Sum_probs=33.4
Q ss_pred CcccCCCCCHh-----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIE-----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e-----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+.... +...+. . ....+++||++|.|+++|.+.|.+.+..
T Consensus 135 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 135 VGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 57999986432 223331 1 1257889999999999999999988754
No 133
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.06 E-value=0.0021 Score=45.74 Aligned_cols=45 Identities=7% Similarity=0.011 Sum_probs=32.9
Q ss_pred CcccCCCCCH-------------hhHHHHh---cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-------------EELDIIY---KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-------------e~l~~l~---~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. .....+++||.+|.|+++|.+.+.+.+.
T Consensus 119 v~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 119 VGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp EEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHh
Confidence 5799998643 2223332 2235889999999999999999988764
No 134
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.02 E-value=0.003 Score=48.89 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=28.4
Q ss_pred CcccCCCCCHhh---HHHH----hcC-CCeEEEeecCCcChHHHHHHHH
Q psy2927 1 MQKVSDQISIEE---LDII----YKI-PHCVPLSAHHKWNFDDLLEKMW 41 (123)
Q Consensus 1 V~NKiD~~~~e~---l~~l----~~~-~~~v~ISA~~~~gld~L~e~i~ 41 (123)
|+||+|+.++++ .+.. ... ..++++||++|.|+++|.+.+.
T Consensus 116 V~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 116 VFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp EECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred EEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 689999987642 2222 122 2588999999999999766543
No 135
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.02 E-value=0.0019 Score=52.16 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=32.0
Q ss_pred CcccCCCCCHh-hHHHHh--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIE-ELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e-~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+...+ +...+. .+.+.+++||.+|.|+++|++.+.+.++
T Consensus 117 v~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 117 AVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp EEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred EEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 58999987542 222221 2346899999999999999999999886
No 136
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0033 Score=44.24 Aligned_cols=45 Identities=13% Similarity=0.055 Sum_probs=32.4
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCc-ChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKW-NFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~-gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+. . .-..+++||+++. |+++|.+.+.+.+.
T Consensus 138 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 138 VGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR 190 (196)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHH
T ss_pred EEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHH
Confidence 5799998643 2333332 2 1257889999999 99999999988763
No 137
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.99 E-value=0.0062 Score=44.90 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=32.2
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|.||+|+... ++...++ .+ -..+.+||++|.|+++|.+.|.+.|.
T Consensus 124 VgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 124 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred EeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 5799997643 3344442 21 23788999999999999999988774
No 138
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.92 E-value=0.0018 Score=46.55 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=32.2
Q ss_pred CcccCCCCCHhh---HHHH-h-cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEE---LDII-Y-KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~---l~~l-~-~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+..... ...+ . ..-..+.+||++|.|+++|.+.+.+.+.
T Consensus 125 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 125 CGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 174 (221)
T ss_dssp EEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHH
T ss_pred EEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 579999874322 1111 1 1225789999999999999999988764
No 139
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.89 E-value=0.00068 Score=51.58 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=34.0
Q ss_pred CcccCCCCCHh----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIE----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+.... .++.+. . ..+++++||.+|.|+++|.+.|.+.+..
T Consensus 118 v~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 118 ALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp EEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCCC
T ss_pred EEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 58999986442 233442 1 1358999999999999999999987753
No 140
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.89 E-value=0.0064 Score=43.09 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=31.5
Q ss_pred CcccCCCCCHh-----hHHHHh-cCC-CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIE-----ELDIIY-KIP-HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e-----~l~~l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|.||+|+.... +...+. .+. ..+.+||++|.|+++|.+.+.+.+.
T Consensus 120 V~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHH
Confidence 57999986421 112221 222 4788999999999999999988763
No 141
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.88 E-value=0.0013 Score=46.57 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=20.0
Q ss_pred CeEEEeecCCcChHHHHHHHHHh
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
..+++||++|.|+++|.+.+.+.
T Consensus 180 ~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 180 KYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 46889999999999999988764
No 142
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.87 E-value=0.0038 Score=45.01 Aligned_cols=25 Identities=8% Similarity=-0.096 Sum_probs=22.2
Q ss_pred CeEEEeecCCcC-hHHHHHHHHHhhc
Q psy2927 21 HCVPLSAHHKWN-FDDLLEKMWEYLK 45 (123)
Q Consensus 21 ~~v~ISA~~~~g-ld~L~e~i~~~L~ 45 (123)
..+.+||++|.| +++|.+.+.+.+.
T Consensus 177 ~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 177 IYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHh
Confidence 578899999998 9999999988764
No 143
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.86 E-value=0.0031 Score=51.21 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=32.1
Q ss_pred CcccCCCCCHh-----hH-HHHh------cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIE-----EL-DIIY------KIPHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e-----~l-~~l~------~~~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+...+ ++ +.+. ....++++||++|.|+++|.+.+.+.+
T Consensus 312 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 312 VVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp EEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred EEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 58999998532 21 1221 134689999999999999999888766
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.85 E-value=0.0022 Score=51.12 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=33.9
Q ss_pred CcccCCCCCHh--h-HHH---H-hcC----CCeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927 1 MQKVSDQISIE--E-LDI---I-YKI----PHCVPLSAHHKWNFDDLLEKMWEYLKLT 47 (123)
Q Consensus 1 V~NKiD~~~~e--~-l~~---l-~~~----~~~v~ISA~~~~gld~L~e~i~~~L~~i 47 (123)
|+||+|+++.. . ++. + ..+ +..+++||+++.|+++|.+.|.+.+..-
T Consensus 298 V~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 298 TLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp EEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 58999998632 1 111 1 111 2578999999999999999999987653
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.83 E-value=0.004 Score=47.99 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=29.2
Q ss_pred CcccCCCCCHhh---HHHH-hcC---CCeEEEeecCCcChHHHHHHHH
Q psy2927 1 MQKVSDQISIEE---LDII-YKI---PHCVPLSAHHKWNFDDLLEKMW 41 (123)
Q Consensus 1 V~NKiD~~~~e~---l~~l-~~~---~~~v~ISA~~~~gld~L~e~i~ 41 (123)
|+||+|+.+... ...+ ..+ ..++++||++|.|+++|.+.+.
T Consensus 121 v~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 121 VINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp EECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred EEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 589999986543 2222 111 3588999999999999877654
No 146
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=95.80 E-value=0.0062 Score=49.48 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=15.9
Q ss_pred CeEEEeecCCcChHHHHH
Q psy2927 21 HCVPLSAHHKWNFDDLLE 38 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e 38 (123)
.++++||.+|.|+++|.+
T Consensus 200 ~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 200 HFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eEEEeeccCCcccccccc
Confidence 489999999999999765
No 147
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=95.78 E-value=0.0079 Score=51.18 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=34.3
Q ss_pred CcccCCCCCH--hh-HHHHh---cC--CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI--EE-LDIIY---KI--PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~--e~-l~~l~---~~--~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+... ++ .+.+. .. .+++++||++|.|+++|++.|.+.++.
T Consensus 129 ViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 129 VLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp EEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred eeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 5899999752 22 23332 22 258999999999999999999998753
No 148
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.76 E-value=0.0059 Score=49.32 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=32.5
Q ss_pred CcccCCCCCHhh--HH----HH----h--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEE--LD----II----Y--KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~--l~----~l----~--~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+...+. .+ .+ . .+.+.+++||++|.|+++|.+.+.+.+.
T Consensus 298 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 298 VFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp EEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 579999885432 11 11 1 2346899999999999999999887664
No 149
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.75 E-value=0.0043 Score=43.55 Aligned_cols=44 Identities=9% Similarity=-0.090 Sum_probs=31.8
Q ss_pred CcccCCCCCH-----hhHHHHh-c-CCCeEEEee-cCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSA-HHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA-~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... ++...+. . .-..+.+|| .++.|+++|.+.+.+.+
T Consensus 133 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 133 LGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp EEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred EEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHH
Confidence 5799998532 3333332 1 124788999 89999999999998765
No 150
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.72 E-value=0.0026 Score=44.07 Aligned_cols=46 Identities=22% Similarity=0.140 Sum_probs=33.7
Q ss_pred CcccCCCCCHh----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIE----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+.... +.+.+. . ....+++||+++.|+++|.+.+.+.+..
T Consensus 118 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 118 ALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp EEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred EEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 57999976432 233342 1 1358999999999999999999998753
No 151
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.62 E-value=0.0019 Score=48.83 Aligned_cols=43 Identities=12% Similarity=0.154 Sum_probs=32.0
Q ss_pred CcccCCCCCHh----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQISIE----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~~e----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|+||+|+.... ..+.+. . ..+++++||.+|.|+++|.+.+.+.
T Consensus 116 v~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 116 ALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred EEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 58999986442 233442 1 1358999999999999999999875
No 152
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.62 E-value=0.0031 Score=48.25 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=32.4
Q ss_pred CcccCCCCCHh----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIE----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.... +.+.+. . .-+++++||.+|.|+++|.+.+.+.+.
T Consensus 113 v~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 113 ALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp EEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred EEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 57999976331 233342 1 125899999999999999999988653
No 153
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=95.60 E-value=0.0074 Score=51.44 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=34.2
Q ss_pred CcccCCCCCH--hh-HHHHh-c--CC--CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI--EE-LDIIY-K--IP--HCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~--e~-l~~l~-~--~~--~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+... ++ .+.+. . .+ +++++||++|.|+++|++.|.+.++.
T Consensus 131 viNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 131 VINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp EEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred EEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 5899998743 22 33342 2 22 48999999999999999999998863
No 154
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.55 E-value=0.0095 Score=41.45 Aligned_cols=44 Identities=11% Similarity=-0.012 Sum_probs=29.6
Q ss_pred CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCC---cChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHK---WNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~---~gld~L~e~i~~~L 44 (123)
|+||+|+... ++...+. .. -..+++||+++ .|++++.+.+.+.+
T Consensus 133 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 133 VGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred EEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 5799998643 2333442 22 25899999999 99999998887655
No 155
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=95.53 E-value=0.0027 Score=51.86 Aligned_cols=46 Identities=20% Similarity=0.184 Sum_probs=34.9
Q ss_pred CcccCCCCCHhh---HHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEE---LDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~---l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+...+. .+.+. .+ ..++++||++|.|+++|.+.|.+.+..
T Consensus 146 V~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 146 VVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp ECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred EEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 689999885543 23332 22 257899999999999999999999854
No 156
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=95.50 E-value=0.0061 Score=45.99 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=21.7
Q ss_pred CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
.++++||++|.|+++|.+.+.+.+
T Consensus 305 ~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 305 KYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHHHH
Confidence 578999999999999999998865
No 157
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.46 E-value=0.0029 Score=48.18 Aligned_cols=43 Identities=9% Similarity=-0.091 Sum_probs=31.8
Q ss_pred CcccCCCCCHhhHHH----HhcC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEELDI----IYKI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~l~~----l~~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+++.+..+. +... -.+ ++||.++.|+++|.+.+.+.+
T Consensus 52 vlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~~~ 99 (262)
T 3cnl_A 52 LLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFDRL 99 (262)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCCCTT
T ss_pred EEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHHHhh
Confidence 689999998755433 2221 135 999999999999998887664
No 158
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.46 E-value=0.0087 Score=41.75 Aligned_cols=46 Identities=11% Similarity=0.023 Sum_probs=32.7
Q ss_pred CcccCCCCCHhhH--------HHHh-c--CC---CeEEEeecCCc-ChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEEL--------DIIY-K--IP---HCVPLSAHHKW-NFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~l--------~~l~-~--~~---~~v~ISA~~~~-gld~L~e~i~~~L~~ 46 (123)
|.||+|+.....+ +.+. . .+ ..+.+||+++. |+++|.+.|.+.+..
T Consensus 118 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 118 VGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp EEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred EEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 4699998865432 1221 1 22 27889999996 999999999987753
No 159
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.39 E-value=0.0065 Score=42.22 Aligned_cols=25 Identities=12% Similarity=-0.012 Sum_probs=21.0
Q ss_pred CCeEEEeec-CCcChHHHHHHHHHhh
Q psy2927 20 PHCVPLSAH-HKWNFDDLLEKMWEYL 44 (123)
Q Consensus 20 ~~~v~ISA~-~~~gld~L~e~i~~~L 44 (123)
...+.+||+ ++.|+++|.+.+.+.+
T Consensus 156 ~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 156 ATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp SEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred cEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 358899998 6899999999888754
No 160
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.32 E-value=0.0081 Score=45.29 Aligned_cols=45 Identities=18% Similarity=0.082 Sum_probs=32.9
Q ss_pred CcccCCCCCHh----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIE----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.... +...+. . --+++++||.+|.|+++|.+.+.+.+.
T Consensus 116 v~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 116 AMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp EEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 57999976432 233342 1 125899999999999999999988764
No 161
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.24 E-value=0.0065 Score=49.01 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=32.2
Q ss_pred CcccCCCCCHhh-----H-HHH-h-----cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEE-----L-DII-Y-----KIPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~-----l-~~l-~-----~~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+.+.+. + +.+ . ...+.+++||++|.|+++|.+.+.+.+.
T Consensus 292 v~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 292 VVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp EEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHH
Confidence 589999985322 1 122 1 1336899999999999999888877664
No 162
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.0044 Score=52.69 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=24.7
Q ss_pred CcccCCCCC--Hhh-------HHHH-h--cC----CCeEEEeecCCcChHHHH
Q psy2927 1 MQKVSDQIS--IEE-------LDII-Y--KI----PHCVPLSAHHKWNFDDLL 37 (123)
Q Consensus 1 V~NKiD~~~--~e~-------l~~l-~--~~----~~~v~ISA~~~~gld~L~ 37 (123)
|+||+|+.. .+. +..+ . .+ ..++++||.+|.|+++|.
T Consensus 311 VvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 311 AMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp EEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred EEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 589999986 211 2111 1 11 257999999999998763
No 163
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=95.17 E-value=0.0081 Score=50.56 Aligned_cols=47 Identities=17% Similarity=0.068 Sum_probs=33.2
Q ss_pred CcccCCCCCHh--h----HHHHh----cCC---CeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927 1 MQKVSDQISIE--E----LDIIY----KIP---HCVPLSAHHKWNFDDLLEKMWEYLKLT 47 (123)
Q Consensus 1 V~NKiD~~~~e--~----l~~l~----~~~---~~v~ISA~~~~gld~L~e~i~~~L~~i 47 (123)
|+||+|+.... . +.... .+. .++++||++|.|+++|++.+...+...
T Consensus 110 ViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~ 169 (537)
T 3izy_P 110 AINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEML 169 (537)
T ss_dssp CCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTC
T ss_pred EEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhcc
Confidence 68999987431 1 22111 111 478899999999999999999987643
No 164
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=95.10 E-value=0.013 Score=46.63 Aligned_cols=45 Identities=11% Similarity=0.133 Sum_probs=32.5
Q ss_pred Ccc-cCCCCCHhhHH----HHh----cC----CCeEE--EeecC---CcChHHHHHHHHHhhcc
Q psy2927 1 MQK-VSDQISIEELD----IIY----KI----PHCVP--LSAHH---KWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~N-KiD~~~~e~l~----~l~----~~----~~~v~--ISA~~---~~gld~L~e~i~~~L~~ 46 (123)
|+| |+|+ +.+.++ ++. .. .++++ +||.+ +.|+++|++.|.+.++.
T Consensus 118 vvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 118 ALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp EECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred EEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 467 9999 654322 221 11 25899 99999 99999999999887764
No 165
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.06 E-value=0.0055 Score=46.18 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=24.2
Q ss_pred CcccCCCCCHhhHHH----H----hcC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEELDI----I----YKI-PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~l~~----l----~~~-~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|++..+++.. + ... -.++++||.+++|+++|.+.|.+.++.
T Consensus 150 V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 150 LIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp EESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred EEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence 689999987765432 2 111 247779999999999999999998765
No 166
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.01 E-value=0.0085 Score=42.55 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=17.6
Q ss_pred eEEEeecCC------cChHHHHHHHHHh
Q psy2927 22 CVPLSAHHK------WNFDDLLEKMWEY 43 (123)
Q Consensus 22 ~v~ISA~~~------~gld~L~e~i~~~ 43 (123)
.+.+||++| .|+++|.+.|.+.
T Consensus 186 ~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 186 FLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp EEECBCC-------CCBCHHHHHHHHHH
T ss_pred EEEeeccCCCccccccChHHHHHHHHHh
Confidence 677999999 9999999988765
No 167
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.01 E-value=0.0044 Score=46.57 Aligned_cols=74 Identities=11% Similarity=0.122 Sum_probs=45.9
Q ss_pred CcccCCCCCHh----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHH
Q psy2927 1 MQKVSDQISIE----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIE 74 (123)
Q Consensus 1 V~NKiD~~~~e----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~ 74 (123)
|+||+|+.... +...+. . ..+++++||.+|.|+++|.+.+.+.+... .. ..++..+.+ ..++
T Consensus 115 v~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~~-------~~----~~~~~~~~~-~~~e 182 (271)
T 3k53_A 115 VLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGK-------VT----TNPIIPRYD-EDIE 182 (271)
T ss_dssp EEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHTC-------CC----CCCCCCCCC-HHHH
T ss_pred EEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhcc-------cc----CCCCCcCCC-HHHH
Confidence 57999976432 233332 1 12589999999999999999999887421 10 112233343 4566
Q ss_pred HHHHHhHHHHHh
Q psy2927 75 DFCNKLHRTIAK 86 (123)
Q Consensus 75 d~a~~IH~d~~~ 86 (123)
+++..|-..+.+
T Consensus 183 ~~~~~l~~~~~~ 194 (271)
T 3k53_A 183 REIKHISELLRG 194 (271)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhh
Confidence 777666555543
No 168
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.99 E-value=0.0062 Score=43.76 Aligned_cols=24 Identities=13% Similarity=-0.017 Sum_probs=20.5
Q ss_pred CeEEEeec-CCcChHHHHHHHHHhh
Q psy2927 21 HCVPLSAH-HKWNFDDLLEKMWEYL 44 (123)
Q Consensus 21 ~~v~ISA~-~~~gld~L~e~i~~~L 44 (123)
..+++||+ ++.|+++|.+.+.+.+
T Consensus 178 ~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 178 TYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred EEEEeeeccCCcCHHHHHHHHHHHH
Confidence 57899999 6899999999887753
No 169
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.85 E-value=0.0082 Score=48.69 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=29.9
Q ss_pred CcccCCCCCHhh-HHHH--hcCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEE-LDII--YKIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~-l~~l--~~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+..... .... ..+...+++||.+|.|+++|.+.+.+.+..
T Consensus 137 V~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 137 AVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp EEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred EEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHhhccc
Confidence 579999874432 2222 134467899999999999999999988764
No 170
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=94.72 E-value=0.015 Score=48.09 Aligned_cols=46 Identities=7% Similarity=-0.016 Sum_probs=29.0
Q ss_pred CcccCCCCCHhh-----HHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEE-----LDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~-----l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+..... +... ... ..++++||++|.|+++|.+.+.+.+..
T Consensus 156 V~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 156 VMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp EECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred EEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 689999875322 2322 121 248999999999999999999998754
No 171
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.68 E-value=0.023 Score=45.50 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=28.1
Q ss_pred CcccCCCCCHhh---HHHH----hcC-CCeEEEeecCCcChHHHHHH
Q psy2927 1 MQKVSDQISIEE---LDII----YKI-PHCVPLSAHHKWNFDDLLEK 39 (123)
Q Consensus 1 V~NKiD~~~~e~---l~~l----~~~-~~~v~ISA~~~~gld~L~e~ 39 (123)
|+||+|+++++. ++.+ ... -.++++||.++.|+++|...
T Consensus 166 vlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 166 VLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp EEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHH
T ss_pred EEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHh
Confidence 689999997754 2222 121 14899999999999987764
No 172
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=94.53 E-value=0.013 Score=46.78 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=31.9
Q ss_pred CcccCCCCC-HhhH-------HHH-h--cC----CCeEEEeecCCcC------------------hHHHHHHHHHhhc
Q psy2927 1 MQKVSDQIS-IEEL-------DII-Y--KI----PHCVPLSAHHKWN------------------FDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~-~e~l-------~~l-~--~~----~~~v~ISA~~~~g------------------ld~L~e~i~~~L~ 45 (123)
|+||+|+.. .+.+ ..+ . .+ .+++++||++|.| +++|++.+.+.++
T Consensus 134 viNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp EEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred EEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 589999984 3322 122 1 12 3589999999987 8889999988775
No 173
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.47 E-value=0.004 Score=46.71 Aligned_cols=45 Identities=13% Similarity=-0.018 Sum_probs=31.7
Q ss_pred CcccCCCCCHhh--HHHHhc--------CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEE--LDIIYK--------IPHCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~--l~~l~~--------~~~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+..... .+.+.. +..++++||++|.|+++|.+.+.+..+
T Consensus 198 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 198 VITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp EEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred EEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence 689999985432 222221 113577999999999999999888543
No 174
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=94.44 E-value=0.0064 Score=49.82 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=13.2
Q ss_pred CeEEEeecCCcChHH
Q psy2927 21 HCVPLSAHHKWNFDD 35 (123)
Q Consensus 21 ~~v~ISA~~~~gld~ 35 (123)
.++++||.+|.|+++
T Consensus 213 ~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 213 NWVPISGFSGEGVYK 227 (483)
T ss_dssp EEEECCSSSCTTSSS
T ss_pred eEEEEeeecCCCccc
Confidence 479999999999975
No 175
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=94.40 E-value=0.019 Score=48.67 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.4
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
+++++||.+|.|+++|++.|.+.++
T Consensus 193 pvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 193 SIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEeccCCCCchhHHHHHHhhcc
Confidence 4789999999999999999988765
No 176
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=94.25 E-value=0.019 Score=45.80 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=31.6
Q ss_pred CcccCCCCC-Hhh-------HHHH-h--cC----CCeEEEeecCCcC----------hHHHHHHHHHhhc
Q psy2927 1 MQKVSDQIS-IEE-------LDII-Y--KI----PHCVPLSAHHKWN----------FDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~-~e~-------l~~l-~--~~----~~~v~ISA~~~~g----------ld~L~e~i~~~L~ 45 (123)
|+||+|+.+ .+. +..+ . .+ .+++++||++|.| +++|++.+.+.++
T Consensus 125 viNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 125 YVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp EEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred EEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 589999984 322 2222 1 22 2589999999875 8899999988775
No 177
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.23 E-value=0.025 Score=39.74 Aligned_cols=23 Identities=13% Similarity=0.002 Sum_probs=19.9
Q ss_pred CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
..+.+||++ .|++++.+.+.+.|
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHT
T ss_pred ceEEEEech-hhHHHHHHHHHHHh
Confidence 468899999 99999999988754
No 178
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=94.19 E-value=0.04 Score=33.92 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=34.5
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHH--hhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIA--KEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~--~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
.+-++.+ +|+.|+...+..... +...++ | -..++.+..++.|+|||.|.|+.
T Consensus 19 ~~~~~~~-~tv~~ll~~l~~~~p~~~~v~~~-v-----~vNg~~v~~~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 19 DIVLEQA-LTVQQFEDLLFERYPQINNKKFQ-V-----AVNEEFVQKSDFIQPNDTVALIP 72 (77)
T ss_dssp ECCCSSC-EEHHHHHHHHHHHCGGGTTCCCE-E-----EETTEEECTTSEECTTCEEEEEC
T ss_pred EEECCCC-CCHHHHHHHHHHHCcchhcceEE-E-----EECCEECCCCCCcCCCCEEEEEC
Confidence 4445676 899999877654421 222112 1 12567788899999999999975
No 179
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=94.02 E-value=0.016 Score=49.06 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=20.9
Q ss_pred CeEEEeecCCcChH--------------HHHHHHHHhhc
Q psy2927 21 HCVPLSAHHKWNFD--------------DLLEKMWEYLK 45 (123)
Q Consensus 21 ~~v~ISA~~~~gld--------------~L~e~i~~~L~ 45 (123)
.++++||.+|.|++ .|++.|.+.++
T Consensus 358 ~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 358 HFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp EEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred EEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 47999999999998 78888877654
No 180
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=93.80 E-value=0.11 Score=33.69 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=35.1
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHH---Hhhc--------ceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTI---AKEF--------KYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~---~~~f--------~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
+.+-++.+ +|+.|+...+-... .+.+ ....| -..++.+..++.|+|||.|.|+.
T Consensus 29 ~~~e~~~~-~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v-----~VNg~~v~~~~~L~dGDeV~i~p 93 (98)
T 1vjk_A 29 EEIELPEG-ARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNI-----AVNGRYVSWDEELKDGDVVGVFP 93 (98)
T ss_dssp EEEEECTT-CBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEE-----EETTBCCCTTCBCCTTCEEEEES
T ss_pred EEEECCCC-CCHHHHHHHHHhHChhHHHHhhccccccCCcEEE-----EECCEECCCCCCCCCCCEEEEEC
Confidence 35667786 89999987765432 2211 11111 12456677899999999999975
No 181
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=93.56 E-value=0.14 Score=32.36 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=34.4
Q ss_pred ccEEEeCCCCCHHHHHHHhHHH---HHhh-cc-------eeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRT---IAKE-FK-------YALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d---~~~~-f~-------~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
..+-++.+ +|+.|+...+-.. +.+. |. +..| -..++.+..++.|+|||.|.|+.
T Consensus 20 ~~~~~~~~-~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v-----~VN~~~v~~~~~l~~gDeV~i~P 84 (89)
T 3po0_A 20 VRVDVDGD-ATVGDALDALVGAHPALESRVFGDDGELYDHINV-----LRNGEAAALGEATAAGDELALFP 84 (89)
T ss_dssp EEEECCTT-CBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEE-----EETTEECCTTSBCCTTCEEEEEC
T ss_pred EEEECCCC-CcHHHHHHHHHHHCcHHHHHHhccCCcccccEEE-----EECCEECCCCcccCCCCEEEEEC
Confidence 35666776 8999998776443 2221 10 0111 12556677899999999999974
No 182
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=93.41 E-value=0.038 Score=46.18 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=22.5
Q ss_pred eEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 22 CVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 22 ~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
++++||.++.|+++|++.+.+.++.
T Consensus 253 V~~gSA~~~~GV~~Lld~i~~~~p~ 277 (528)
T 3tr5_A 253 IFFGSAINNFGVGELLDAFVKEAPP 277 (528)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred EEeccccCCccHHHHHHHHHHhCCC
Confidence 5678999999999999999999864
No 183
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=92.78 E-value=0.031 Score=45.05 Aligned_cols=35 Identities=20% Similarity=-0.010 Sum_probs=23.5
Q ss_pred CcccCCCCC--HhhH-------HHH-hcC------CCeEEEeecCCcChHH
Q psy2927 1 MQKVSDQIS--IEEL-------DII-YKI------PHCVPLSAHHKWNFDD 35 (123)
Q Consensus 1 V~NKiD~~~--~e~l-------~~l-~~~------~~~v~ISA~~~~gld~ 35 (123)
|+||+|+.+ ++.+ ..+ ..+ ..++++||++|.|+++
T Consensus 163 viNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 163 AINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp EEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred EEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 589999985 2222 122 122 1478899999999987
No 184
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.67 E-value=0.088 Score=36.93 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=32.6
Q ss_pred CcccCCCCCHhh----HHHH----hcCC---CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEE----LDII----YKIP---HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~----l~~l----~~~~---~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|.||+|+++..+ ++.+ .... ..+|+||+++.|+++|.+.|.+.+.
T Consensus 143 v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 143 LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred EEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 479999987542 1221 1221 3578999999999999999998764
No 185
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=92.66 E-value=0.28 Score=30.78 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=33.8
Q ss_pred cEEEeCCCCCHHHHHHHhHHHH---Hh----------hcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTI---AK----------EFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~---~~----------~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
...++.+ +|+.++...+.... .+ ......|=| ++-...-+.++.|+|||.|.|+.
T Consensus 18 ~~~~~~~-~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~---~~v~~~~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETFNGI-SKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNG---NNITSMKGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSC-CBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESS---SBGGGTCSSSCBCCTTCEEEEEC
T ss_pred EEEcCCC-CcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECC---EEccccCCCCcCCCCCCEEEEeC
Confidence 3456665 89999987776542 21 122223322 22222236899999999999975
No 186
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.42 E-value=0.0078 Score=47.23 Aligned_cols=35 Identities=11% Similarity=-0.013 Sum_probs=24.1
Q ss_pred CcccCCCCCHhh----HHHH-h---c-CCCeEEEeecCCcChHH
Q psy2927 1 MQKVSDQISIEE----LDII-Y---K-IPHCVPLSAHHKWNFDD 35 (123)
Q Consensus 1 V~NKiD~~~~e~----l~~l-~---~-~~~~v~ISA~~~~gld~ 35 (123)
|+||+|++++++ ++.+ . . --+++++||.++.|+++
T Consensus 123 vlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~ 166 (307)
T 1t9h_A 123 CITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLAD 166 (307)
T ss_dssp EEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTT
T ss_pred EEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHH
Confidence 689999986533 3333 1 1 12589999999988764
No 187
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=92.22 E-value=0.087 Score=31.66 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=30.5
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeC----CCceecCCCeEEEEec
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVG----KEHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg----~~~~l~d~Dvv~i~~~ 122 (123)
++-+ .+ +|+.|+...+.-. .+.+..| ..++-+- .++.|+|||.|+|+.-
T Consensus 8 ~~~~-~~-~tv~~ll~~l~~~-~~~v~va--------vN~~~v~~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 8 PRPL-EG-KTLKEVLEEMGVE-LKGVAVL--------LNEEAFLGLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp EECC-TT-CCHHHHHHHHTBC-GGGEEEE--------ETTEEEEGGGCCCCCCCTTCEEEEEEC
T ss_pred EEEc-CC-CcHHHHHHHcCCC-CCcEEEE--------ECCEECCccccCCcCCCCCCEEEEEee
Confidence 4455 65 8999998766422 1122222 1444444 4599999999999863
No 188
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=92.18 E-value=0.22 Score=30.39 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=34.5
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
.+-++.+ +|+.|+...+.-. .+. .|. -..++-+-++..|+|||.|.|+.-
T Consensus 17 ~~~~~~~-~tv~~Ll~~l~~~-~~~--v~v------avN~~~v~~~~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 17 ILESGAP-RRIKDVLGELEIP-IET--VVV------KKNGQIVIDEEEIFDGDIIEVIRV 66 (70)
T ss_dssp EEEESSC-CBHHHHHHHTTCC-TTT--EEE------EETTEECCTTSBCCTTCEEEEEEC
T ss_pred eEECCCC-CcHHHHHHHhCCC-CCC--EEE------EECCEECCCcccCCCCCEEEEEec
Confidence 4778887 9999998776321 111 222 125666778889999999999863
No 189
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=91.93 E-value=0.029 Score=35.15 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=33.9
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
+++-++.+ +|+.|+...+.-+. +.... -..++-+..++.|+|||.|.|+.
T Consensus 23 ~~~~~~~~-~Tv~dLl~~L~~~~-~~v~V--------avNg~~v~~~~~L~dGD~V~i~p 72 (77)
T 1rws_A 23 KEIEWREG-MKVRDILRAVGFNT-ESAIA--------KVNGKVVLEDDEVKDGDFVEVIP 72 (77)
T ss_dssp CCCCCCSS-CCHHHHHHTTTCSS-CSSCE--------EETTEEECSSSCCCSSCCCBCSC
T ss_pred EEEECCCC-CcHHHHHHHhCCCC-cCEEE--------EECCEECCCCCCcCCCCEEEEEc
Confidence 35566776 99999987664221 11111 22567788899999999999864
No 190
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=91.84 E-value=0.034 Score=33.68 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=32.2
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCC----CceecCCCeEEEEec
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGK----EHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~----~~~l~d~Dvv~i~~~ 122 (123)
++.++.+ +|+.|+...+. +..... | | -..++-+-+ ++.|+|||.|+|+.-
T Consensus 9 ~~~~~~~-~tv~~ll~~l~--~~~~~v-~-v-----avN~~~v~~~~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 9 AMQCAAG-QTVHELLEQLD--QRQAGA-A-L-----AINQQIVPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp EECCCTT-CCHHHHHHHHT--CCCSSE-E-E-----EETTEEECHHHHTTCCCCTTEEECEEES
T ss_pred EEEcCCC-CcHHHHHHHcC--CCCCCE-E-E-----EECCEECCchhcCCcCCCCCCEEEEEee
Confidence 5566776 99999987663 111111 2 1 124455554 899999999999863
No 191
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=91.79 E-value=0.02 Score=47.74 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=30.0
Q ss_pred CcccCCCCCH--hhHH-HHh-------cC---CCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQISI--EELD-IIY-------KI---PHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~~--e~l~-~l~-------~~---~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|+||+|+... +.+. .+. .+ .+++++||++|.|+++|++.|...
T Consensus 109 viNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 109 AVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp EEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred EEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 5799998743 2221 111 11 247899999999999999998754
No 192
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.71 E-value=0.12 Score=36.24 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=31.5
Q ss_pred CcccCCCCCH-----hhHHHHhcCC--CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISI-----EELDIIYKIP--HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~~~~--~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
|+||+|+... ++...+...+ ..+.+||+++.|+++|.+.+.+.+.
T Consensus 116 v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 116 VGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5799998632 2233342212 3567999999999999999888764
No 193
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=91.48 E-value=0.32 Score=29.81 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=31.8
Q ss_pred cEEEeCCCCCHHHHHHHhHHH--HH---hhcceeEEecCCCCCCCce-eCCCceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRT--IA---KEFKYALVWGSSVKHQPQK-VGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d--~~---~~f~~A~vwg~s~k~~~q~-vg~~~~l~d~Dvv~i~~ 121 (123)
.+-+ .+ +|+.|+-..+-.. +. +.+..|+ +++. .+.++.|+|||.|.|+.
T Consensus 15 ~~e~-~~-~tv~~ll~~L~~~~~l~~~l~~~~vav--------N~~~v~~~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 15 NFFI-KA-NDLKELRAILQEKEGLKEWLGVCAIAL--------NDHLIDNLNTPLKDGDVISLLP 69 (74)
T ss_dssp CEEE-EC-SSHHHHHHHHHTCTTTTTTTTTCEEEE--------SSSEECCTTCCCCTTCEEEEEC
T ss_pred EEee-CC-CcHHHHHHHHHHCcCHHHHhhccEEEE--------CCEEcCCCCcCCCCCCEEEEEC
Confidence 4666 55 8999998776532 11 1222222 3334 47899999999999974
No 194
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=91.14 E-value=0.061 Score=43.38 Aligned_cols=15 Identities=27% Similarity=0.260 Sum_probs=13.1
Q ss_pred CeEEEeecCCcChHH
Q psy2927 21 HCVPLSAHHKWNFDD 35 (123)
Q Consensus 21 ~~v~ISA~~~~gld~ 35 (123)
..+++||.+|.|+++
T Consensus 188 ~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 188 RFVPVVAPSGDNITH 202 (435)
T ss_dssp EEEECBTTTTBTTTB
T ss_pred eEEEeecccCccccc
Confidence 489999999999974
No 195
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=90.95 E-value=0.29 Score=30.13 Aligned_cols=49 Identities=18% Similarity=0.168 Sum_probs=31.5
Q ss_pred eCCCCCHHHHHHHhH---HHHHhhcce--eEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 67 HTDRRSIEDFCNKLH---RTIAKEFKY--ALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 67 ~~g~~tv~d~a~~IH---~d~~~~f~~--A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
+.+ +|+.|+...+- ..+.+.+.. ..| -..++.++.++.|+|||.|.|+.
T Consensus 23 ~~~-~tv~~ll~~L~~~~p~~~~~l~~~~~~v-----~vN~~~v~~~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 23 ADF-PTVEALRQHMAAQSDRWALALEDGKLLA-----AVNQTLVSFDHPLTDGDEVAFFP 76 (81)
T ss_dssp SCC-SBHHHHHHHHHTTCHHHHHHHCCTTCEE-----EETTEECCTTCBCCTTCEEEEEC
T ss_pred CCC-CCHHHHHHHHHHHChhHHHHhcCCCEEE-----EECCEECCCCCCCCCCCEEEEeC
Confidence 354 89999977664 333322210 111 12567788999999999999974
No 196
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=90.71 E-value=0.023 Score=49.92 Aligned_cols=43 Identities=9% Similarity=-0.123 Sum_probs=31.3
Q ss_pred CcccCCCCCHhh-HHHH-h--------cCCCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQISIEE-LDII-Y--------KIPHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~~e~-l~~l-~--------~~~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|+||+|+++.+. ...+ . .+..++++||.+|.|+++|.+++.+.
T Consensus 223 VlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 223 VITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp EEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred EEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 689999986543 1222 1 11247889999999999999999874
No 197
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.54 E-value=0.034 Score=41.02 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=22.2
Q ss_pred EEEeecCCcChHHHHHHHHHhhcc
Q psy2927 23 VPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 23 v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
+++||.++.|+++|.+.|.+.+..
T Consensus 185 ~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 185 RAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHh
Confidence 789999999999999999998865
No 198
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=90.30 E-value=0.051 Score=41.00 Aligned_cols=46 Identities=13% Similarity=0.136 Sum_probs=30.9
Q ss_pred CcccCCCCCHhh--HHHHhc----C-CCeEE---EeecC---CcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEE--LDIIYK----I-PHCVP---LSAHH---KWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~--l~~l~~----~-~~~v~---ISA~~---~~gld~L~e~i~~~L~~ 46 (123)
|+||+|+...+. .+.+.. + ...++ +||.. +.|+++|++.+.+.++.
T Consensus 204 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 204 VITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp EEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred EEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 689999985443 333321 1 23344 56666 78999999999999864
No 199
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=89.55 E-value=0.19 Score=46.43 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=31.3
Q ss_pred CcccCCCCC-Hhh-------HHHH-h--cC----CCeEEEeecCC--------cChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQIS-IEE-------LDII-Y--KI----PHCVPLSAHHK--------WNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~-~e~-------l~~l-~--~~----~~~v~ISA~~~--------~gld~L~e~i~~~L~ 45 (123)
|+||+|+.. .+. +..+ . .+ .+++++||++| .|+++|++.|.+.++
T Consensus 418 VINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 418 FLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp EEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred EEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 589999985 321 2222 1 12 25899999999 568999999988664
No 200
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=89.52 E-value=0.022 Score=44.56 Aligned_cols=43 Identities=12% Similarity=-0.022 Sum_probs=30.3
Q ss_pred CcccCCCCCHhh--HHHHh--cC------CCeEEEeecCCcChHHHHHHHHHh
Q psy2927 1 MQKVSDQISIEE--LDIIY--KI------PHCVPLSAHHKWNFDDLLEKMWEY 43 (123)
Q Consensus 1 V~NKiD~~~~e~--l~~l~--~~------~~~v~ISA~~~~gld~L~e~i~~~ 43 (123)
|+||+|+++... .+.+. .+ ..++++||.++.|+++|.+.+.+.
T Consensus 203 V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 203 VITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp EEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred EeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 689999985532 22221 11 135679999999999999988773
No 201
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.30 E-value=0.25 Score=34.55 Aligned_cols=44 Identities=14% Similarity=0.130 Sum_probs=30.4
Q ss_pred CcccCCCCCH-----hhHHHHhcCC--CeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISI-----EELDIIYKIP--HCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~-----e~l~~l~~~~--~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+... ++...+...+ ..+.+||+++.|++++.+.+.+.+
T Consensus 140 v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 140 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 5799998632 2233332212 356699999999999999988754
No 202
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=89.29 E-value=0.13 Score=44.10 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=22.6
Q ss_pred CeEEEeec--------------CCcChHHHHHHHHHhhc
Q psy2927 21 HCVPLSAH--------------HKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 21 ~~v~ISA~--------------~~~gld~L~e~i~~~L~ 45 (123)
.++++||+ ++.|+++|.+.+.+.+.
T Consensus 286 ~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 286 RVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp TEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 58999999 99999999999988774
No 203
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=88.89 E-value=0.19 Score=31.72 Aligned_cols=51 Identities=14% Similarity=0.246 Sum_probs=32.4
Q ss_pred cEEEe--CCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCC----ceecCCCeEEEEec
Q psy2927 63 PVVLH--TDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKE----HVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~--~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~----~~l~d~Dvv~i~~~ 122 (123)
+.-++ .+ +|+.++...+--+-.+. .|. ...++-|-++ +.|+|||.|+|++-
T Consensus 9 ~~e~~~~~~-~Tl~~LL~~l~~~~~~~--vAV------avNg~iVpr~~~~~~~L~dGD~IEIv~~ 65 (78)
T 2k5p_A 9 PSTVDGAES-LNVTELLSALKVAQAEY--VTV------ELNGEVLEREAFDATTVKDGDAVEFLYF 65 (78)
T ss_dssp EEECSSCSC-EEHHHHHHHHTCSCTTT--CCE------EETTEECCTTHHHHCEECSSBCEEECCC
T ss_pred EEEcCCCCC-CcHHHHHHHcCCCCCCc--EEE------EECCEECChHHcCcccCCCCCEEEEEee
Confidence 56666 76 89999986542110112 232 2355666665 89999999999863
No 204
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=88.61 E-value=0.095 Score=42.67 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=24.0
Q ss_pred CcccCCCCC--HhhH-------HHH-h--cC----CCeEEEeecCCcChHHH
Q psy2927 1 MQKVSDQIS--IEEL-------DII-Y--KI----PHCVPLSAHHKWNFDDL 36 (123)
Q Consensus 1 V~NKiD~~~--~e~l-------~~l-~--~~----~~~v~ISA~~~~gld~L 36 (123)
|+||+|+.. ++.+ ..+ . .+ ..++++||++|.|++++
T Consensus 151 viNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 151 AVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred EEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 589999983 3322 111 1 22 36899999999999754
No 205
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=87.42 E-value=0.3 Score=31.51 Aligned_cols=51 Identities=25% Similarity=0.390 Sum_probs=31.0
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCC----CceecCCCeEEEEec
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGK----EHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~----~~~l~d~Dvv~i~~~ 122 (123)
++-++.+++|+.|+...+- +... ..|. ...++-|-+ ++.|+|||.|+|++-
T Consensus 29 ~~el~~~~~Tv~dLL~~L~--~~~~-~vaV------avNg~iV~~~~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 29 DVKWKKDTGTIQDLLASYQ--LENK-IVIV------ERNKEIIGKERYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp EECCSSSCCBHHHHHHHTT--CTTS-CCEE------EETTEEECGGGTTTSBCCSSSEEEEEEE
T ss_pred EEECCCCCCcHHHHHHHhC--CCCC-CEEE------EECCEECChhhcCCcCCCCCCEEEEEcc
Confidence 4445552279999987763 2211 1121 124455554 789999999999863
No 206
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=87.08 E-value=0.16 Score=41.39 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.7
Q ss_pred CeEEEeecCCcChHHH
Q psy2927 21 HCVPLSAHHKWNFDDL 36 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L 36 (123)
.++++||++|.|+++|
T Consensus 227 ~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 227 KYMPVSAYTGQNVKDR 242 (467)
T ss_dssp EEEECBTTTTBTTSSC
T ss_pred eEEecccccccccccc
Confidence 3789999999999864
No 207
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=85.69 E-value=0.25 Score=38.87 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=23.6
Q ss_pred CcccCCCCCHhhHHH----Hh----cC-CCeEEEeecCCcC---hHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEELDI----IY----KI-PHCVPLSAHHKWN---FDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~l~~----l~----~~-~~~v~ISA~~~~g---ld~L~e~i~~~L~ 45 (123)
|+||+|++...++.. +. .. -.++++||.++.| +..|.+.|.+.++
T Consensus 180 V~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 180 VIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIP 236 (361)
T ss_dssp EEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHHHHHHHHHTCS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHHHHHHHHhcCC
Confidence 689999987765432 21 11 1468899999877 3445566655554
No 208
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=85.28 E-value=0.46 Score=31.88 Aligned_cols=17 Identities=41% Similarity=0.685 Sum_probs=15.6
Q ss_pred CCCceecCCCeEEEEec
Q psy2927 106 GKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 106 g~~~~l~d~Dvv~i~~~ 122 (123)
|.+|+|+|||.|.|++.
T Consensus 82 gldt~L~dgD~V~fist 98 (110)
T 2k9x_A 82 GMDYVLNDGDTVEFIST 98 (110)
T ss_dssp SSCCCCCSSCEEEEEEC
T ss_pred CcccCCCCcCEEEEeCC
Confidence 89999999999999874
No 209
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=84.61 E-value=1.7 Score=28.05 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=14.8
Q ss_pred CCCceecCCCeEEEEe
Q psy2927 106 GKEHVLNDEDVVQIVK 121 (123)
Q Consensus 106 g~~~~l~d~Dvv~i~~ 121 (123)
+.++.|+|||.|.|+.
T Consensus 79 ~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 79 GLETLLKDSDEIGILP 94 (99)
T ss_dssp STTSCCCTTEEEEEEC
T ss_pred CCCCCCCCCCEEEEEC
Confidence 8999999999999975
No 210
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=83.38 E-value=1.7 Score=28.01 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=32.2
Q ss_pred cEEEe--CCCCCHHHHHHHhHHHHHh----h--cc-eeEEecC-CCCCCCce----eCCCceecCCCeEEEEe
Q psy2927 63 PVVLH--TDRRSIEDFCNKLHRTIAK----E--FK-YALVWGS-SVKHQPQK----VGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~--~g~~tv~d~a~~IH~d~~~----~--f~-~A~vwg~-s~k~~~q~----vg~~~~l~d~Dvv~i~~ 121 (123)
.+-++ .+ +|+.|+...+-..... - |. -+.+-.. ..-..+.. -|.++.|+|||.|-|+.
T Consensus 23 ~~~l~~~~~-~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 23 KIKMDKEDP-VTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp EEEECSCSC-CBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred EEecCCCCC-CcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEEC
Confidence 45556 66 8999998777554311 1 10 0000000 00012222 27899999999999975
No 211
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=83.33 E-value=0.38 Score=29.85 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=30.2
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCC----CceecCCCeEEEEec
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGK----EHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~----~~~l~d~Dvv~i~~~ 122 (123)
+.-+ .+ +|+.++...+--+ .. ..|. ...++-|-+ ++.|+|||.|+|++-
T Consensus 9 ~~e~-~~-~Tl~~LL~~l~~~--~~-~vAV------~vNg~iVpr~~~~~~~L~dGD~veIv~~ 61 (73)
T 2kl0_A 9 QREV-QS-ASVAALMTELDCT--GG-HFAV------ALNYDVVPRGKWDETPVTAGDEIEILTP 61 (73)
T ss_dssp EECC-CC-SBHHHHHHHTTCC--SS-SCEE------EESSSEECHHHHTTCBCCTTCEEEEECC
T ss_pred EEEc-CC-CcHHHHHHHcCCC--CC-cEEE------EECCEECChHHcCcccCCCCCEEEEEcc
Confidence 4445 55 8999988654211 11 1232 124455555 589999999999863
No 212
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=83.08 E-value=0.66 Score=35.36 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=24.5
Q ss_pred CcccCCCCCHhh-----------HHHH-hcC----CCeEEEeecCCcChHHHHHHHH
Q psy2927 1 MQKVSDQISIEE-----------LDII-YKI----PHCVPLSAHHKWNFDDLLEKMW 41 (123)
Q Consensus 1 V~NKiD~~~~e~-----------l~~l-~~~----~~~v~ISA~~~~gld~L~e~i~ 41 (123)
|+||+|+...+. +..+ ..+ ...+++||.+ .|+.++...+.
T Consensus 121 v~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv 176 (307)
T 3r7w_A 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIV 176 (307)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHH
T ss_pred EEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHH
Confidence 579999987322 2223 122 3578899999 66665544443
No 213
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=81.46 E-value=0.44 Score=36.50 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=21.0
Q ss_pred CcccCCCCCHhhHH----H---H-hcC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927 1 MQKVSDQISIEELD----I---I-YKI-PHCVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 1 V~NKiD~~~~e~l~----~---l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L 44 (123)
|+||+|+...+++. . . ... -..+.+||.++ |++++.+.+.+.+
T Consensus 161 V~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 161 VIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp EECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHh
Confidence 57999998764432 1 1 122 24678999999 9998877766655
No 214
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=80.32 E-value=1.4 Score=27.87 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=14.2
Q ss_pred CCCceecCCCeEEEEe
Q psy2927 106 GKEHVLNDEDVVQIVK 121 (123)
Q Consensus 106 g~~~~l~d~Dvv~i~~ 121 (123)
|.++.|+|||.|.|+.
T Consensus 73 ~~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 73 GLATAIADGDSVTILP 88 (93)
T ss_dssp GGGCBCCTTCEEEEEE
T ss_pred CCCcCCCCCCEEEEEC
Confidence 5799999999999975
No 215
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=79.24 E-value=0.85 Score=33.60 Aligned_cols=46 Identities=9% Similarity=0.043 Sum_probs=29.8
Q ss_pred CcccCCCCCH-----------hhHHHH-hcCC-CeEEEeecC-----CcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISI-----------EELDII-YKIP-HCVPLSAHH-----KWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~-----------e~l~~l-~~~~-~~v~ISA~~-----~~gld~L~e~i~~~L~~ 46 (123)
|.||+|+... +.+..+ ..+. ..+++++.. +.|+++|++.|.+.+..
T Consensus 145 v~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 145 FTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp EECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 4799998642 123333 2232 355565444 68999999999998863
No 216
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=77.80 E-value=1.6 Score=36.97 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=22.0
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
++++.||.++.|++.|++.|.+.++
T Consensus 214 Pv~~gSa~~~~Gv~~LLd~i~~~~p 238 (638)
T 3j25_A 214 PLYHGSAKSNIGIDNLIEVITNKFY 238 (638)
T ss_dssp CCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred cccccccccCCCchhHhhhhhcccc
Confidence 4667899999999999999998875
No 217
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=77.78 E-value=9.4 Score=24.34 Aligned_cols=58 Identities=7% Similarity=0.176 Sum_probs=34.4
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhcceeE-Ee-cCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYAL-VW-GSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~-vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
..+-|++. .|...+..++.....-....-+ ++ |+ +..+.+--.++-|+|||+|..+.+
T Consensus 20 i~~~v~~~-t~l~kl~~~y~~~~gi~~~~~rf~FdG~--~l~~~~Tp~dl~medgD~Idv~~~ 79 (94)
T 2io1_B 20 VQFKIKRH-TPLSKLMKAYCERQGLSMRQIRFRFDGQ--PINETDTPAQLEMEDEDTIDVFQQ 79 (94)
T ss_dssp EEEEEETT-SCTHHHHHHHHHHHTCCGGGEEEEETTE--ECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred EEEEECCC-CHHHHHHHHHHHHhCCCcccEEEEECCE--EcCCCCCHHHcCCCCCCEEEEEEe
Confidence 36778886 8888887776655442211111 11 21 122333445699999999998754
No 218
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=77.26 E-value=1.1 Score=30.09 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=16.0
Q ss_pred eCCCceecCCCeEEEEec
Q psy2927 105 VGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 105 vg~~~~l~d~Dvv~i~~~ 122 (123)
-|++++|+|||.|.|+..
T Consensus 87 ~gldt~L~dGDeV~iip~ 104 (114)
T 1wgk_A 87 GELDYQLQDQDSILFIST 104 (114)
T ss_dssp CTTTCBCCSSEEEEEEEC
T ss_pred CCcCcCCCCCCEEEEeCC
Confidence 489999999999999864
No 219
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=75.98 E-value=0.63 Score=36.80 Aligned_cols=23 Identities=9% Similarity=0.010 Sum_probs=19.5
Q ss_pred eEEEeecCCcChHHHHHHHHHhh
Q psy2927 22 CVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 22 ~v~ISA~~~~gld~L~e~i~~~L 44 (123)
.+.+||.++.|++++.+.+.+.+
T Consensus 320 ~~etSA~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 320 THFTCATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEECcCchhHHHHHHHHHHHH
Confidence 56799999999999888887765
No 220
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=74.78 E-value=1.8 Score=28.66 Aligned_cols=45 Identities=16% Similarity=0.303 Sum_probs=28.5
Q ss_pred HHHhHHHHHh----hcceeEEecCC-CCCCCceeCCC--ceecCCCeEEEEe
Q psy2927 77 CNKLHRTIAK----EFKYALVWGSS-VKHQPQKVGKE--HVLNDEDVVQIVK 121 (123)
Q Consensus 77 a~~IH~d~~~----~f~~A~vwg~s-~k~~~q~vg~~--~~l~d~Dvv~i~~ 121 (123)
|.+-|-.+.- ++.....-|.+ +-..+++++++ |.|++||+++|+-
T Consensus 40 cSR~h~~L~~~~~~g~v~vk~lg~Np~~vng~~l~k~~~~~L~~GD~l~Ll~ 91 (102)
T 3kt9_A 40 CSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVN 91 (102)
T ss_dssp SCSSCEEEEEETTTTEEEEEECSSSCCEETTEECCBTCEEEECTTCCEEEET
T ss_pred ccCcceEEEEecCCCEEEEEECcCCCCeECCEEcCCCCeEEeCCCCEEEEcc
Confidence 5555644432 33344555643 23356777777 9999999999863
No 221
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=73.91 E-value=0.88 Score=36.07 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=19.2
Q ss_pred eEEEeecCCcChHHHHHHHHHhh
Q psy2927 22 CVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 22 ~v~ISA~~~~gld~L~e~i~~~L 44 (123)
.+.+||.++.|++++.+.+.+.+
T Consensus 329 ~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 329 HHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCchhHHHHHHHHHHHH
Confidence 56799999999999888877654
No 222
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=72.30 E-value=10 Score=24.12 Aligned_cols=55 Identities=7% Similarity=0.203 Sum_probs=32.2
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeC-----CCceecCCCeEEEEec
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVG-----KEHVLNDEDVVQIVKK 122 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg-----~~~~l~d~Dvv~i~~~ 122 (123)
..+-+++. .+...+-..+.....-....-+ --|.|+|+. .++-++|||+|.++..
T Consensus 18 v~~~vk~~-t~l~kl~~~y~~~~gi~~~~~r-----f~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 77 (91)
T 2io0_B 18 VQFKIKRH-TPLSKLMKAYCERQGLSMRQIR-----FRFDGQPINETDTPAQLEMEDEDTIDVFQQ 77 (91)
T ss_dssp EEEEEETT-SCTHHHHHHHHHHTTCCSTTEE-----EEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEECCC-ChHHHHHHHHHHHhCCCcccEE-----EEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 46777886 7877776555443321111111 123455544 4589999999998753
No 223
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=70.92 E-value=2 Score=26.53 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=31.0
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
.+-++.| +|+.|+...+--. ..-. +. --.|+-+-.|..++ ||.|+|++
T Consensus 14 ~~ev~~g-~Tv~dLL~~Lgl~--~~~V-vV------~vNG~~v~~d~~l~-GD~VeIv~ 61 (74)
T 2l32_A 14 EVAVDDD-GTYADLVRAVDLS--PHEV-TV------LVDGRPVPEDQSVE-VDRVKVLR 61 (74)
T ss_dssp EEECSTT-CSHHHHHHTTCCC--SSCC-CE------ECCCCCCCTTSSSC-CCCEEECS
T ss_pred eEEcCCC-CcHHHHHHHcCCC--cceE-EE------EECCEECCHHHCCC-CCEEEEEE
Confidence 5778887 9999988544311 1111 21 12566677788775 99999975
No 224
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=69.69 E-value=2.4 Score=30.21 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=30.6
Q ss_pred cEEEeCCCCCHHHHHHHhHHH---HHhhc-------ceeEEecCCCCCCCceeC----CCceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRT---IAKEF-------KYALVWGSSVKHQPQKVG----KEHVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d---~~~~f-------~~A~vwg~s~k~~~q~vg----~~~~l~d~Dvv~i~~ 121 (123)
.+.++ + +|+.++...+... +.+.+ .+..| -.+++.+. .++.|+|||.|.|+.
T Consensus 17 ~~ev~-~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~V-----aVNg~~v~~~~~~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 17 QLELP-G-ATVGEVLENLVRAYPALKEELFEGEGLAERVSV-----FLEGRDVRYLQGLSTPLSPGATLDLFP 82 (168)
T ss_dssp EEECC-C-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEE-----EETTEEGGGTTGGGCBCCTTCEEEEEC
T ss_pred eEEEC-C-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEE-----EECCEECCCcCCCccCCCCCCEEEEEC
Confidence 34454 4 7999998776543 22211 11111 11344444 499999999999975
No 225
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=67.21 E-value=2.3 Score=30.54 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=26.9
Q ss_pred CcccCCCCCHhh-----------HHHH-hcC-CCeEEEeecC-----CcChHHHHHHHHHhhc
Q psy2927 1 MQKVSDQISIEE-----------LDII-YKI-PHCVPLSAHH-----KWNFDDLLEKMWEYLK 45 (123)
Q Consensus 1 V~NKiD~~~~e~-----------l~~l-~~~-~~~v~ISA~~-----~~gld~L~e~i~~~L~ 45 (123)
|+||+|++.... +..+ ..+ ...+++++.. ..++.+|++.+.+.+.
T Consensus 151 v~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 151 IFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp EEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 589999885533 2223 122 2466676553 3688899998888774
No 226
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=66.06 E-value=22 Score=22.40 Aligned_cols=55 Identities=7% Similarity=0.191 Sum_probs=33.7
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCcee-----CCCceecCCCeEEEEec
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKV-----GKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~v-----g~~~~l~d~Dvv~i~~~ 122 (123)
..+-+++. .+...+-..+.....-....-+. -|.|+|+ -.++-|+|||+|..+.+
T Consensus 30 i~~~v~~~-t~l~kl~~~y~~~~gi~~~~~rf-----~fdG~~l~~~~Tp~dl~medgD~Idv~~~ 89 (93)
T 2d07_B 30 VQFKIKRH-TPLSKLMKAYCERQGLSMRQIRF-----RFDGQPINETDTPAQLEMEDEDTIDVFQQ 89 (93)
T ss_dssp EEEEEETT-SCHHHHHHHHHHHHTCCGGGEEE-----EETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEEccC-CHHHHHHHHHHHHhCCCccceEE-----EECCEEcCCCCCHHHcCCCCCCEEEEEee
Confidence 36778886 78888876666554332221111 2334443 45689999999998753
No 227
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=64.72 E-value=8.4 Score=32.69 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=42.0
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
...++.| +|+.|+|..|...+++...-|.| .|+-+.+++.|+.+.-|++++
T Consensus 11 ~~~~~~~-~t~~~~a~~i~~~~~~~~~~~~v-------ng~~~dl~~~l~~d~~~~~~~ 61 (642)
T 1qf6_A 11 QRHYDHA-VSPMDVALDIGPGLAKACIAGRV-------NGELVDACDLIENDAQLSIIT 61 (642)
T ss_dssp EEECSSC-BCHHHHHHHHCHHHHHHCSEEEE-------TTEEEETTSCBCSCEECCEEC
T ss_pred eEEecCC-CCHHHHHHHhchhhhhheEEEEE-------CCEEeccccccCCCceEEEee
Confidence 3556776 99999999999999998888876 567788889998887777775
No 228
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=61.06 E-value=2.3 Score=34.37 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=18.1
Q ss_pred CcccCCCCCHhhHHHH--------h-cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 1 MQKVSDQISIEELDII--------Y-KIPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l--------~-~~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|+||+|++...++..+ . ..-..+.+||.++.+.+++...+.+.++.
T Consensus 173 VinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iPf 227 (418)
T 2qag_C 173 LIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 227 (418)
T ss_dssp EEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------CCE
T ss_pred EEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCCc
Confidence 5799999987654331 1 11246778999999999887777776664
No 229
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=60.59 E-value=19 Score=21.89 Aligned_cols=53 Identities=9% Similarity=0.126 Sum_probs=31.7
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCC-----CceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGK-----EHVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~-----~~~l~d~Dvv~i~~ 121 (123)
.+-+++. .+...+...+.....-....-+ --|.|+|+.. ++-|+|||+|..++
T Consensus 22 ~~~i~~~-t~l~kl~~~y~~~~gi~~~~~r-----f~fdG~~l~~~~Tp~~l~medgD~Idv~~ 79 (79)
T 3a4r_A 22 EISLSPD-SPLKVLMSHYEEAMGLSGHKLS-----FFFDGTKLSGKELPADLGLESGDLIEVWG 79 (79)
T ss_dssp EEEECTT-SCHHHHHHHHHHHHTCTTCCCE-----EEETTEECCSCCCHHHHTCCTTCEEEEEC
T ss_pred EEEECCC-ChHHHHHHHHHHHhCCCcccEE-----EEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 5777776 7877776666554432221111 1235555544 57899999998763
No 230
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=60.14 E-value=8.2 Score=32.59 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=41.4
Q ss_pred EEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927 64 VVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK 121 (123)
Q Consensus 64 ~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~ 121 (123)
.-++.| +|+.|+|..|...+++...-|.| .|+-+.+++.|+.+.-|++++
T Consensus 14 ~~~~~g-~t~~~ia~~~~~~~~~~~v~~~v-------ng~~~dl~~~l~~d~~v~~~~ 63 (645)
T 1nyr_A 14 KAFDKG-TTTEDIAQSISPGLRKKAVAGKF-------NGQLVDLTKPLETDGSIEIVT 63 (645)
T ss_dssp CBCCTT-CCHHHHHHTTCHHHHHHCCEEEE-------TTEEECTTSCCCSCBCCCEEC
T ss_pred EEecCC-CCHHHHHHHhhhhcccCeEEEEE-------CCEEEeCCcccCCCCeEEEee
Confidence 445676 99999999999999988888876 567788999998888888875
No 231
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=60.14 E-value=2 Score=33.25 Aligned_cols=82 Identities=9% Similarity=0.136 Sum_probs=44.4
Q ss_pred CcccCCCCCHhh--HHHHh--c---CCCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCH
Q psy2927 1 MQKVSDQISIEE--LDIIY--K---IPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSI 73 (123)
Q Consensus 1 V~NKiD~~~~e~--l~~l~--~---~~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv 73 (123)
|+||+|+++... .+.+. . .-..+++|+.++.|++++.+...........|...+. +... .. ...+
T Consensus 209 V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~----~~~~---~~-~~g~ 280 (360)
T 3t34_A 209 VLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARKREREYFSNTTE----YRHL---AN-KMGS 280 (360)
T ss_dssp EEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHHHHHHHHTTCTT----TGGG---GG-GCSH
T ss_pred EEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHHHHHHHhcCCCc----cccc---hh-hcCH
Confidence 589999986532 22222 1 1247889999998887654433322222233333221 2211 11 1457
Q ss_pred HHHHHHhHHHHHhhcce
Q psy2927 74 EDFCNKLHRTIAKEFKY 90 (123)
Q Consensus 74 ~d~a~~IH~d~~~~f~~ 90 (123)
.-+..++.+-+.+..+.
T Consensus 281 ~~L~~~l~~~l~~~i~~ 297 (360)
T 3t34_A 281 EHLAKMLSKHLERVIKS 297 (360)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777766665543
No 232
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=59.04 E-value=18 Score=23.52 Aligned_cols=53 Identities=8% Similarity=0.207 Sum_probs=30.6
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeC-----CCceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVG-----KEHVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg-----~~~~l~d~Dvv~i~~ 121 (123)
.+-|++. .+...+-..+.....-....-+ --|.|+|+. .++-|+|||+|..+.
T Consensus 38 ~~kVk~~-t~l~kL~~~y~ek~gi~~~~~r-----f~FdG~~l~~~~Tp~dl~medgD~Idv~~ 95 (104)
T 1wz0_A 38 QFKIKRH-TPLSKLMKAYCERQGLSMRQIR-----FRFDGQPINETDTPAQLEMEDEDTIDVFQ 95 (104)
T ss_dssp EEEECTT-SCHHHHHHHHHHHHTCCTTTSC-----EESSSSBCCTTSCTTTTTCCTTEEEEECC
T ss_pred EEEEcCC-ChHHHHHHHHHHHhCCCcceEE-----EEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 5667775 7777776665544332111111 113344443 458999999998864
No 233
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=58.43 E-value=5.9 Score=26.79 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=17.3
Q ss_pred CCceeCCCceecCCCeEEE
Q psy2927 101 QPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~~~~l~d~Dvv~i 119 (123)
.|++|...+.|.+||+|.|
T Consensus 95 NG~~V~~~~~L~~GD~I~l 113 (124)
T 3fm8_A 95 NGSSVSSPIQLHHGDRILW 113 (124)
T ss_dssp TTEECCSCEEECTTCEEEE
T ss_pred CCEEcCCcEECCCCCEEEE
Confidence 6799998899999999987
No 234
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=57.49 E-value=5.6 Score=27.64 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=17.3
Q ss_pred CCceeCCCceecCCCeEEE
Q psy2927 101 QPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~~~~l~d~Dvv~i 119 (123)
.|++|...+.|.+||+|.|
T Consensus 115 NG~~i~~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 115 NGKKVTEPSILRSGNRIIM 133 (154)
T ss_dssp TTEECCSCEECCTTCEEEE
T ss_pred CCEEcCCceECCCCCEEEE
Confidence 5799988899999999988
No 235
>3fm3_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2, protein structure initiative; 2.18A {Encephalitozoon cuniculi} PDB: 3fmq_A* 3fmr_A*
Probab=56.57 E-value=13 Score=29.13 Aligned_cols=53 Identities=15% Similarity=0.247 Sum_probs=31.6
Q ss_pred EeCCCCCHHHHHHHhHHHHHhhcc------eeEEecCC-----CCCCCceeCCCceecCCCeEEE
Q psy2927 66 LHTDRRSIEDFCNKLHRTIAKEFK------YALVWGSS-----VKHQPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 66 l~~g~~tv~d~a~~IH~d~~~~f~------~A~vwg~s-----~k~~~q~vg~~~~l~d~Dvv~i 119 (123)
++.| .|-.|+|..+|.-+.+... ||.=-.-| +-+.|..--.+.+|++||+|.|
T Consensus 66 ikpG-~t~~el~~~~e~~i~~~~~~~~~~g~~FP~ciSvN~~v~Hg~P~~~~~~~~L~~GDiV~I 129 (358)
T 3fm3_A 66 VRPG-ITLLEIVRSIEDSTRTLLKGERNNGIGFPAGMSMNSCAAHYTVNPGEQDIVLKEDDVLKI 129 (358)
T ss_dssp CCTT-CBHHHHHHHHHHHHHHHTTTSGGGGEEEEEEEEETTEEECCCCCTTCCCCBCCTTCEEEE
T ss_pred CCCC-CcHHHHHHHHHHHHHHhcCCCcccCCCCCcEEeeCCEEEecCCCCCCCCeEecCCCEEEE
Confidence 4566 8999999999987766432 12100001 1112221224678999999998
No 236
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=54.74 E-value=5.8 Score=25.48 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=16.8
Q ss_pred CCceeCCCceecCCCeEEE
Q psy2927 101 QPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~~~~l~d~Dvv~i 119 (123)
.++++...+.|++||+|+|
T Consensus 74 ng~~i~~~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 74 EGRKIEHQSTLSANQVVAL 92 (106)
T ss_dssp TTEECSSEEECCTTCCEEE
T ss_pred CCEECCCCeECCCCCEEEE
Confidence 5688888889999999987
No 237
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=54.09 E-value=7.4 Score=25.61 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=16.8
Q ss_pred CCceeCCCceecCCCeEEE
Q psy2927 101 QPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~~~~l~d~Dvv~i 119 (123)
.|+++...+.|.+||+|.|
T Consensus 85 Ng~~i~~~~~L~~GD~I~i 103 (120)
T 1wln_A 85 DGQRISETTMLQSGMRLQF 103 (120)
T ss_dssp TSCBCSSCEEECTTCEEEE
T ss_pred CCEEcCCCEECCCCCEEEE
Confidence 5688988889999999987
No 238
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=53.46 E-value=1.2 Score=31.11 Aligned_cols=32 Identities=3% Similarity=-0.021 Sum_probs=12.4
Q ss_pred CcccCCCCCHhh-----------HHHHh-c-CCCeEEEeecCCcC
Q psy2927 1 MQKVSDQISIEE-----------LDIIY-K-IPHCVPLSAHHKWN 32 (123)
Q Consensus 1 V~NKiD~~~~e~-----------l~~l~-~-~~~~v~ISA~~~~g 32 (123)
|+||+|+..... +..+. . ....+.+||+++.+
T Consensus 126 v~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 126 ACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp EEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 579999885422 22221 1 11367799998765
No 239
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=53.00 E-value=31 Score=21.47 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=33.8
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcce-eEEecCCCCCCCcee--------CCCceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKY-ALVWGSSVKHQPQKV--------GKEHVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~-A~vwg~s~k~~~q~v--------g~~~~l~d~Dvv~i~~ 121 (123)
..-++.. .||.+|-.+|++-+.-.-.. -+.+. +...++..+ =-.|-++|||.|.++-
T Consensus 26 e~~l~~~-~TV~~LK~~i~~~~gip~~~q~L~~~-~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d 91 (97)
T 1wjn_A 26 EKQLPDS-MTVQKVKGLLSRLLKVPVSELLLSYE-SSKMPGREIELENDLQPLQFYSVENGDCLLVRW 91 (97)
T ss_dssp EEEEETT-SBHHHHHHHHHTTTTCCTTTCEEEEE-CTTSCSCEEECCCSSSBSGGGTCCTTCEEEEEC
T ss_pred EEECCCC-CCHHHHHHHHHHHHCCChhHeEEEEE-cCCCCceeeccCCCcccHhhcCCCCCCEEEEEe
Confidence 4567776 89999999999877532111 12222 111111111 1378899999998863
No 240
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=52.59 E-value=7.6 Score=26.21 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=15.4
Q ss_pred CCceeCC--CceecCCCeEEE
Q psy2927 101 QPQKVGK--EHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~--~~~l~d~Dvv~i 119 (123)
.|+|+.. -+.|++||+|+|
T Consensus 99 Ng~ri~~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 99 NKTRIPPRTYCRVHVGHVVRF 119 (130)
T ss_dssp TTEECCTTCCEECCTTCEEEE
T ss_pred CCEECCCCceeECCCCCEEEE
Confidence 4688855 478999999998
No 241
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=51.70 E-value=13 Score=28.08 Aligned_cols=25 Identities=16% Similarity=0.023 Sum_probs=21.1
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
.+.++||.+|+||.+=++-+.+.+.
T Consensus 198 ~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 198 LVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp EEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred EEEEeECCCCcCHHHHHHHHHHHHH
Confidence 4788999999999998888877664
No 242
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=50.35 E-value=5.9 Score=26.73 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=15.7
Q ss_pred CCceeCCCceecCCCeEEE
Q psy2927 101 QPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~~~~l~d~Dvv~i 119 (123)
.|+++.. +.|.+||+|+|
T Consensus 87 Ng~~i~~-~~L~~GD~I~i 104 (131)
T 3hx1_A 87 NGKKVQE-HIIQTGDEIVM 104 (131)
T ss_dssp TTEEESE-EECCTTCEEEC
T ss_pred CCEEeEe-EECCCCCEEEE
Confidence 4588887 99999999987
No 243
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=50.27 E-value=7.9 Score=32.86 Aligned_cols=26 Identities=23% Similarity=0.110 Sum_probs=23.2
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
++++.||.++.|+++|++.|.+.++.
T Consensus 249 pv~~~SA~~~~Gv~~Ll~~i~~~lp~ 274 (665)
T 2dy1_A 249 PVALASGEREIGVLPLLELILEALPS 274 (665)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred EEEEeecccCcCHHHHHHHHHHhCCC
Confidence 47789999999999999999998863
No 244
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=49.48 E-value=8.4 Score=31.87 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=23.4
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
++++.||.++.|++.|+++|.++++.
T Consensus 253 Pv~~gSA~~~~Gv~~LLd~i~~~~P~ 278 (529)
T 2h5e_A 253 PVFFGTALGNFGVDHMLDGLVEWAPA 278 (529)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHSCS
T ss_pred EEEeeecccCCCHHHHHHHHHHhCCC
Confidence 36779999999999999999999875
No 245
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=48.96 E-value=9.8 Score=24.67 Aligned_cols=21 Identities=33% Similarity=0.308 Sum_probs=17.1
Q ss_pred CCceeCC--CceecCCCeEEEEe
Q psy2927 101 QPQKVGK--EHVLNDEDVVQIVK 121 (123)
Q Consensus 101 ~~q~vg~--~~~l~d~Dvv~i~~ 121 (123)
.+++++. .+.|.+||+|.|-.
T Consensus 73 ng~~l~~~~~~~L~~GD~i~~G~ 95 (116)
T 1lgp_A 73 NKLKVVKKQTCPLQTGDVIYLVY 95 (116)
T ss_dssp CCCCCCCSSCCCCCTTCEEEEEC
T ss_pred CCEEcCCCCcEECCCCCEEEEec
Confidence 4677876 69999999999853
No 246
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=46.71 E-value=9.8 Score=32.48 Aligned_cols=26 Identities=23% Similarity=0.148 Sum_probs=23.3
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
++++.||.++.|++.|+++|.+.|+.
T Consensus 257 Pv~~gSA~~~~Gv~~LLd~i~~~lPs 282 (691)
T 1dar_A 257 PVFLGSALKNKGVQLLLDAVVDYLPS 282 (691)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred EEEEeecccCcCHHHHHHHHHHhCCC
Confidence 36778999999999999999999964
No 247
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=46.58 E-value=36 Score=22.33 Aligned_cols=53 Identities=8% Similarity=0.134 Sum_probs=30.6
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCC-----CceecCCCeEEEEe
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGK-----EHVLNDEDVVQIVK 121 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~-----~~~l~d~Dvv~i~~ 121 (123)
.+-|++. .+...+...+.....-....-+ -.|.|+|+.. ++-|+|||+|.++.
T Consensus 40 ~fkVk~~-t~l~kL~~ay~ek~gi~~~~~r-----fiFdG~~L~~~~Tp~dl~mEDgD~Idv~~ 97 (110)
T 2k8h_A 40 FFRIKSR-TALKKLIDTYCKKQGISRNSVR-----FLFDGTPIDETKTPEELGMEDDDVIDAMV 97 (110)
T ss_dssp EEEECTT-SSHHHHHHHHHHHHTCCSSSCE-----EESSSCBCCSSSHHHHHHCSSEEEEEEEC
T ss_pred EEEECCC-ChHHHHHHHHHHHhCCCcccEE-----EEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 5667775 6777776555544332211111 1245555544 47889999998864
No 248
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=45.50 E-value=7.7 Score=25.74 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.8
Q ss_pred CCceeCCCceecCCCeEEE
Q psy2927 101 QPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~~~~l~d~Dvv~i 119 (123)
.++++...+.|.+||+|+|
T Consensus 80 Ng~~i~~~~~L~~Gd~i~i 98 (128)
T 1r21_A 80 NGSVIDEPVRLKHGDVITI 98 (128)
T ss_dssp TTEECSSCEECCTTEEEEC
T ss_pred CCEECCCcEEcCCCCEEEE
Confidence 5688988899999999987
No 249
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=44.29 E-value=46 Score=19.41 Aligned_cols=70 Identities=9% Similarity=0.216 Sum_probs=38.5
Q ss_pred ceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhc-ceeEEe-cCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 47 TRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEF-KYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 47 irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f-~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
+.++.+.... ..-.+-+... .|+.++-.+|+....-.- ..-.++ |+-- ...+-=.+|-++|||+|.++.+
T Consensus 4 m~i~vk~~~g---~~~~~~v~~~-~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L--~d~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 4 IKLKVIGQDS---SEIHFKVKMT-THLKKLKESYCQRQGVPMNSLRFLFEGQRI--ADNHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp EEEEEECTTC---CEEEEEEETT-SCTHHHHHHHHHHHTCCGGGEEEEETTEEC--CTTCCHHHHTCCTTEEEEEEEC
T ss_pred EEEEEECCCC---CEEEEEECCC-ChHHHHHHHHHHHHCCCcccEEEEECCEEe--CCCCCHHHcCCCCCCEEEEEEe
Confidence 4555554332 2335777776 899999988887642100 111222 2211 1112223577889999998754
No 250
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=43.57 E-value=15 Score=30.49 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=22.8
Q ss_pred eEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 22 CVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 22 ~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
+++.||.++.|++.|+++|.++++.
T Consensus 271 V~~gSA~~~~Gv~~LLd~iv~~~Ps 295 (548)
T 3vqt_A 271 VFFGSAINNFGVREMLDMFVEFAPG 295 (548)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred eeecccccCcCHHHHHHHHHHhCCC
Confidence 6678999999999999999999975
No 251
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=43.19 E-value=7.3 Score=27.13 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=16.6
Q ss_pred CCceeCC--CceecCCCeEEE
Q psy2927 101 QPQKVGK--EHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~--~~~l~d~Dvv~i 119 (123)
.|++++. .+.|.+||+|+|
T Consensus 88 Ng~ri~~~~~~~L~~GD~I~l 108 (158)
T 1dmz_A 88 NNNRMIQGTKFLLQDGDEIKI 108 (158)
T ss_dssp TTEECCSSEEEECCSSCCEES
T ss_pred CCEEcCCCceEEcCCCCEEEE
Confidence 4688887 599999999998
No 252
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=42.78 E-value=9.9 Score=26.04 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=16.2
Q ss_pred CCceeC--CCceecCCCeEEE
Q psy2927 101 QPQKVG--KEHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg--~~~~l~d~Dvv~i 119 (123)
.|++++ ..+.|.+||+|.|
T Consensus 108 Ng~~i~~~~~~~L~~GD~I~l 128 (149)
T 1gxc_A 108 NTELVGKGKRRPLNNNSEIAL 128 (149)
T ss_dssp TTEECCTTCEEECCTTEEEEE
T ss_pred CCEECCCCCeEECCCCCEEEE
Confidence 468888 5799999999987
No 253
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=42.62 E-value=12 Score=25.62 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=16.4
Q ss_pred CCceeCC-CceecCCCeEEE
Q psy2927 101 QPQKVGK-EHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~-~~~l~d~Dvv~i 119 (123)
.|++++. .+.|.+||+|.|
T Consensus 92 Ng~~i~~~~~~L~~GD~I~l 111 (151)
T 2jqj_A 92 NGNRLVKKDYILKNGDRIVF 111 (151)
T ss_dssp TTEECCSSCEEECSSEEEEE
T ss_pred CCEEcCCCceECCCCCEEEE
Confidence 5688887 599999999987
No 254
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=41.97 E-value=16 Score=31.27 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=23.4
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
++++.||.++.|++.|+++|.+.|+.
T Consensus 263 Pv~~gSa~~~~Gv~~LLd~i~~~lPs 288 (704)
T 2rdo_7 263 LVTCGSAFKNKGVQAMLDAVIDYLPS 288 (704)
T ss_pred EEEEeecccCccHHHHHHHHHHHCCC
Confidence 47778999999999999999999874
No 255
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=41.52 E-value=9.3 Score=27.38 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=16.7
Q ss_pred CCceeCC--CceecCCCeEEE
Q psy2927 101 QPQKVGK--EHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~--~~~l~d~Dvv~i 119 (123)
.|+|++. .+.|.+||+|.|
T Consensus 112 Ng~ri~~~~~~~L~~GD~I~l 132 (182)
T 1qu5_A 112 NNNRMIQGTKFLLQDGDEIKI 132 (182)
T ss_dssp TTEECCSSEEEECCTTBCCEE
T ss_pred CCEEcCCCcceEcCCCCEEEE
Confidence 4689987 599999999998
No 256
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=41.18 E-value=13 Score=31.67 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=23.6
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
++++.||.++.|++.|+++|.++|+.
T Consensus 255 Pv~~gSA~~~~Gv~~LLd~i~~~lPs 280 (693)
T 2xex_A 255 PVLCGTAFKNKGVQLMLDAVIDYLPS 280 (693)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred eEEEeecccCcCHHHHHHHHHHHCCC
Confidence 47789999999999999999999974
No 257
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=41.17 E-value=13 Score=23.43 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=15.2
Q ss_pred CCceeCCCceecCCCeEEE
Q psy2927 101 QPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~~~~l~d~Dvv~i 119 (123)
.++++. .+.|++||+|+|
T Consensus 70 ng~~i~-~~~L~~gd~i~i 87 (100)
T 3po8_A 70 NNAPVQ-EWQLADGDVIRL 87 (100)
T ss_dssp TTEECS-EEECCTTCEEEE
T ss_pred CCEECc-eEECCCCCEEEE
Confidence 457776 799999999987
No 258
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=40.11 E-value=32 Score=22.45 Aligned_cols=35 Identities=11% Similarity=0.344 Sum_probs=24.6
Q ss_pred cceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcce
Q psy2927 46 LTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKY 90 (123)
Q Consensus 46 ~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~ 90 (123)
.+++|. ..| ..+.+.+..+ .|+.|+|. -|++++.+
T Consensus 11 vvkvf~-~Dg----ssksi~V~~~-~Ta~dv~~----~L~~K~~~ 45 (100)
T 1wgr_A 11 VVKVYS-EDG----ACRSVEVAAG-ATARHVCE----MLVQRAHA 45 (100)
T ss_dssp EEEEEE-TTS----CEEEEEECTT-CCHHHHHH----HHHCSSSC
T ss_pred EEEEEe-cCC----CEEEEEECCC-CcHHHHHH----HHHHHcCC
Confidence 467887 333 4568999997 99999994 45555533
No 259
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=39.63 E-value=57 Score=19.09 Aligned_cols=57 Identities=11% Similarity=0.205 Sum_probs=32.7
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhc-ceeEEe-cCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEF-KYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f-~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
.+-++.. +||.++-.+|+....-.. ..-+++ |+-. ...+-=.+|-+++++.|.++.+
T Consensus 17 ~~~v~~~-~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L--~d~~tL~~~~i~~~~~i~l~~r 75 (85)
T 3n3k_B 17 ILEVEPS-DTIENVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLSDYNIHNHSALYLLLK 75 (85)
T ss_dssp EEECCTT-CBHHHHHHHHHHHHCCCGGGEEEEETBEEC--CTTCBTTTTTCCTTCEEEEEEC
T ss_pred EEEECCC-CcHHHHHHHHHHHHCCCHHHEEEEECCeEC--CCCCCHHHCCCCCCCEEEEEEe
Confidence 4566665 899999888887653111 112222 2211 1112234677889999998754
No 260
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=39.50 E-value=16 Score=24.13 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.1
Q ss_pred CCceeCC--CceecCCCeEEE
Q psy2927 101 QPQKVGK--EHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~--~~~l~d~Dvv~i 119 (123)
.++++.. .+.|.+||+|+|
T Consensus 84 Ng~~l~~~~~~~L~~Gd~I~l 104 (127)
T 1g6g_A 84 NGQKVEKNSNQLLSQGDEITV 104 (127)
T ss_dssp TTEECCTTCCEECCTTCEEEE
T ss_pred CCEEcCCCCeEEcCCCCEEEE
Confidence 4688877 699999999987
No 261
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=39.43 E-value=16 Score=24.55 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=16.1
Q ss_pred CCceeCC--CceecCCCeEEE
Q psy2927 101 QPQKVGK--EHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~--~~~l~d~Dvv~i 119 (123)
.++++.. .+.|.+||+|.|
T Consensus 80 Ng~~l~~~~~~~L~~GD~I~l 100 (138)
T 2pie_A 80 NRARLEPLRVYSIHQGDYIQL 100 (138)
T ss_dssp TTEECCTTCCEECCTTCEEEE
T ss_pred CCEEcCCCCcEECCCCCEEEE
Confidence 4578877 699999999998
No 262
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=38.81 E-value=73 Score=20.44 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=39.7
Q ss_pred hccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHh-----hcceeEEecCCCCCCCceeCCCceecCCCeEE
Q psy2927 44 LKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAK-----EFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQ 118 (123)
Q Consensus 44 L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~-----~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~ 118 (123)
-++|.|+-+.+.. ...++-+... .||+++=.+|-....- +++| ||+--+ ..+.+ .||.++||+.+.
T Consensus 19 ~~mIqI~Vk~~~G---kk~~v~v~p~-DTI~~LK~~I~~k~Gip~~qQrLif---~Gk~Lk-D~~TL-~dY~I~dgstLh 89 (93)
T 3plu_A 19 SHMIEVVVNDRLG---KKVRVKCLGE-DSVGDFKKVLSLQIGTQPNKIVLQK---GGSVLK-DHISL-EDYEVHDQTNLE 89 (93)
T ss_dssp -CEEEEEEECTTS---CEEEEEEETT-SBHHHHHHHHHHHHTCCGGGEEEEE---TTEECC-TTSBT-GGGTCCTTCEEE
T ss_pred CceEEEEEECCCC---CEEEEEECCc-CHHHHHHHHHHHHhCCCHHHEEEEe---CCEEcc-CcCCH-HHcCCCCCCEEE
Confidence 3556777775543 2335666665 7999987776443321 2222 454322 33434 489999999987
Q ss_pred EE
Q psy2927 119 IV 120 (123)
Q Consensus 119 i~ 120 (123)
+.
T Consensus 90 L~ 91 (93)
T 3plu_A 90 LY 91 (93)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 263
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=37.72 E-value=1.9 Score=35.85 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=18.6
Q ss_pred eEEEeecCCcC-hHHHHHHHHHh
Q psy2927 22 CVPLSAHHKWN-FDDLLEKMWEY 43 (123)
Q Consensus 22 ~v~ISA~~~~g-ld~L~e~i~~~ 43 (123)
.+++||..|.| +++|++.+.+.
T Consensus 288 ~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 288 QPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp HHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ceeeehhcCCCcHHHHHHHHHHH
Confidence 45689999999 99999998765
No 264
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=37.67 E-value=14 Score=24.64 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=22.3
Q ss_pred HhhcceeEEecCC-CCCCCcee--CCCceecCCCeEEEE
Q psy2927 85 AKEFKYALVWGSS-VKHQPQKV--GKEHVLNDEDVVQIV 120 (123)
Q Consensus 85 ~~~f~~A~vwg~s-~k~~~q~v--g~~~~l~d~Dvv~i~ 120 (123)
.+++.....-|.+ +-..++++ |..+.|++||+++|+
T Consensus 58 ~~~~v~vk~lG~Np~~vng~~l~k~~~~~L~~GD~leLl 96 (110)
T 2brf_A 58 ETRTVAVKQLGVNPSTTGTQELKPGLEGSLGVGDTLYLV 96 (110)
T ss_dssp TTTEEEEEECSSSCCEEC-CBCCTTCEEEEETTCEEEEE
T ss_pred CCCEEEEEEcccCCcEECCEEcCCCCEEEecCCCEEEEc
Confidence 4455555555643 22344444 556899999999986
No 265
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=37.02 E-value=79 Score=20.02 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=32.3
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhcc--eeEEe-cCCCCCCCceeCCCceecCCCeEEEE
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEFK--YALVW-GSSVKHQPQKVGKEHVLNDEDVVQIV 120 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~--~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~ 120 (123)
-+-|+.+ .|+.++.......-.-.+. ...++ | .+-.|..--.||.++|||.|..+
T Consensus 23 ~f~I~~~-t~v~kLi~ayc~~~~I~~~~~IrllFDG--dRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 23 RLSIPVD-FTVKDLIKRYCTEVKISFHERIRLEFEG--EWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp EEEEETT-SBHHHHHHHHHHHHTCCCCTTCEEEETT--EECCTTSBGGGSSCCTTCEEEEE
T ss_pred EEEecCC-CCHHHHHHHHHHHcCCCcCceEEEEEcC--cccCccCChhhhCCcCCceeeee
Confidence 4667786 8998886444433322221 22222 2 12334445568999999999865
No 266
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=36.79 E-value=13 Score=24.11 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=15.7
Q ss_pred CCceeCC--CceecCCCeEEE
Q psy2927 101 QPQKVGK--EHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~--~~~l~d~Dvv~i 119 (123)
.++++.. .+.|.+||+|+|
T Consensus 81 ng~~l~~~~~~~L~~gd~i~l 101 (118)
T 1uht_A 81 NSNALDPETSVNLGDGDVIKL 101 (118)
T ss_dssp SSSBCCTTCEEECCTTEEEEE
T ss_pred CCEECCCCCeEEcCCCCEEEE
Confidence 4577775 689999999987
No 267
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=36.25 E-value=16 Score=24.80 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=15.8
Q ss_pred CCceeCC--CceecCCCeEEE
Q psy2927 101 QPQKVGK--EHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~--~~~l~d~Dvv~i 119 (123)
.++++.. .+.|.+||+|+|
T Consensus 88 Ng~~i~~~~~~~L~~GD~I~i 108 (145)
T 2csw_A 88 NRARLEPLRVYSIHQGDYIQL 108 (145)
T ss_dssp SSCBCCBTCCEECCSSCCEEE
T ss_pred CCEECCCCccEECCCCCEEEE
Confidence 4577776 699999999998
No 268
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=35.54 E-value=61 Score=18.31 Aligned_cols=57 Identities=12% Similarity=0.247 Sum_probs=32.8
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhh-cceeEEe-cCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKE-FKYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~-f~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
.+-++.. +|+.++-.+|+....=. -..-.++ |+... . .+-=.+|-+.+|+.|.++.+
T Consensus 14 ~i~v~~~-~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d-~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 14 TLEVEPS-DTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-D-GRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp EEECCTT-CBHHHHHHHHHHHHCCCGGGEEEEETTEECC-T-TCBTGGGTCCTTCEEEEEEC
T ss_pred EEEECCC-CcHHHHHHHHHHHHCcCHHHeEEEECCeECC-C-CCcHHHcCCCCCCEEEEEEe
Confidence 4566675 89999999998765210 1112222 22111 1 12224567789999988754
No 269
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=35.41 E-value=68 Score=18.79 Aligned_cols=56 Identities=7% Similarity=0.177 Sum_probs=30.6
Q ss_pred ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEE-e-cCCCCCCCceeCCCceecCCCeEEEE
Q psy2927 62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALV-W-GSSVKHQPQKVGKEHVLNDEDVVQIV 120 (123)
Q Consensus 62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~v-w-g~s~k~~~q~vg~~~~l~d~Dvv~i~ 120 (123)
..+-+++. .+...+-.++.....-....-+. | |. +-.+.+--.++-++|||+|..+
T Consensus 14 v~~~v~~~-t~l~kl~~~y~~~~gi~~~~~rf~fdG~--~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 14 VQFKIKRH-TPLSKLMKAYCERQGLSMRQIRFRFDGQ--PINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEECTT-SCTHHHHHHHHHHHTCCTTTCEEEETTE--ECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEECCC-ChHHHHHHHHHHHhCCCcceEEEEECCE--EcCCCCCHHHcCCCCCCEEEEE
Confidence 36777776 78777766655443321111111 1 21 1122334456889999999875
No 270
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=35.33 E-value=25 Score=28.19 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=22.7
Q ss_pred CCeEEEee--cCCcChHHHHHHHHHhhcc
Q psy2927 20 PHCVPLSA--HHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 20 ~~~v~ISA--~~~~gld~L~e~i~~~L~~ 46 (123)
+.++++|+ ..+.|+++|.+.|.+.|+.
T Consensus 225 ~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 225 PPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp CCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 35799999 5667899999999999864
No 271
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=35.29 E-value=67 Score=18.68 Aligned_cols=70 Identities=10% Similarity=0.171 Sum_probs=38.0
Q ss_pred ceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhc-ceeEEe-cCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 47 TRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEF-KYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 47 irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f-~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
+.++.+.... ....+-++.. +||.++-.+|+....-.. ..-+++ |+-.. . .+-=.+|-+++++.|.++.+
T Consensus 4 m~i~vk~~~g---~~~~~~v~~~-~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~-d-~~tL~~~~i~~~~~l~l~~r 75 (85)
T 3mtn_B 4 MQIFVKTLTG---KTITLEVEPS-DTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-D-GRTLSDYNIQKWSTLFLLLR 75 (85)
T ss_dssp EEEEEECTTS---CEEEEEECTT-CBHHHHHHHHHHHHCCCGGGCEEEETTEECC-T-TSBTGGGTCCTTCEEEEECC
T ss_pred EEEEEEcCCC---CEEEEEECCC-CCHHHHHHHHHHHHCcChHHEEEEECCEECC-C-CCCHHHcCCCCCCEEEEEEE
Confidence 3455554332 2335667776 899999989887653100 111222 22111 1 11223567889999988754
No 272
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=35.15 E-value=18 Score=24.33 Aligned_cols=19 Identities=21% Similarity=0.386 Sum_probs=14.9
Q ss_pred CCcee----CCCceecCCCeEEE
Q psy2927 101 QPQKV----GKEHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~v----g~~~~l~d~Dvv~i 119 (123)
.++++ +..+.|.+||+|+|
T Consensus 94 Ng~~i~l~~~~~~~L~~GD~I~l 116 (132)
T 3va4_A 94 VKPPRVLPPGVSHRLRDQELILF 116 (132)
T ss_dssp TTTTEEECTTCCEECCTTCEEEE
T ss_pred CCEEcccCCCCEEECCCCCEEEE
Confidence 34654 57799999999987
No 273
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A
Probab=35.10 E-value=33 Score=25.19 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHhHHHHHhh-----------cceeEEecCCCCCCCceeCCCceecCCCeEEE
Q psy2927 68 TDRRSIEDFCNKLHRTIAKE-----------FKYALVWGSSVKHQPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 68 ~g~~tv~d~a~~IH~d~~~~-----------f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i 119 (123)
.| .|-.|++..++..+.+. |-.....|.++. .+.-...+.+|++||+|.|
T Consensus 37 pG-~tE~el~~~~~~~~~~~G~~~~~~~~~~f~~iv~~g~n~~-~~H~~p~~~~l~~Gd~v~i 97 (262)
T 3mx6_A 37 PN-VTTNSLNDLCHNFITSHNAIPAPLNYKGFPKSICTSINHV-VCHGIPNDKPLKNGDIVNI 97 (262)
T ss_dssp TT-CBHHHHHHHHHHHHHHTTCEETTTTGGGCCSSSEEEETTE-EECCCCCSCBCCTTCEEEE
T ss_pred CC-CcHHHHHHHHHHHHHHcCCcccccccCCCCcceEeccccc-ccCCCCCCcccCCCCEEEE
Confidence 45 89999999999888763 211122222111 0011233678999999987
No 274
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=34.42 E-value=82 Score=19.44 Aligned_cols=70 Identities=9% Similarity=0.193 Sum_probs=38.7
Q ss_pred ceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhh-cceeEEe-cCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 47 TRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKE-FKYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 47 irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~-f~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
+.++.+.... ....+-+... .|+.++-.+|+....=. -..-++| |+-. ...+-=.+|-++|||+|.++.+
T Consensus 22 m~I~Vk~~~g---~~~~l~v~~~-~tv~~lK~~i~~~~gip~~~qrLif~Gk~L--~d~~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 22 IKLKVIGQDS---SEIHFKVKMT-THLKKLKESYCQRQGVPMNSLRFLFEGQRI--ADNHTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp EEEEEECTTC---CEEEEEEETT-SCTHHHHHHHHHHHTCCGGGEEEEETTEEC--CTTCCHHHHTCCTTCEEEEEES
T ss_pred EEEEEEeCCC---CEEEEEECCC-CcHHHHHHHHHHHHCCChhhEEEEECCeEc--CCCCCHHHCCCCCCCEEEEEEe
Confidence 4555554332 2335677776 89999998888765310 0111222 2211 1111223677889999998754
No 275
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=34.22 E-value=14 Score=24.96 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=16.0
Q ss_pred CCceeC--CCceecCCCeEEE
Q psy2927 101 QPQKVG--KEHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg--~~~~l~d~Dvv~i 119 (123)
.++++. ..+.|.+||+|+|
T Consensus 105 Ng~~l~~~~~~~L~~gd~i~~ 125 (140)
T 2jpe_A 105 GHIRLEPHKPQQIPIDSTVSF 125 (140)
T ss_dssp SSCEECSSSCCEECTTCCBBC
T ss_pred CCEECCCCccEECCCCCEEEE
Confidence 467887 6799999999987
No 276
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=34.04 E-value=21 Score=23.12 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=15.3
Q ss_pred CCceeCCCceecCCCeEEE
Q psy2927 101 QPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~~~~l~d~Dvv~i 119 (123)
.++++. .+.|++||+|+|
T Consensus 78 ng~~i~-~~~L~~gd~i~i 95 (115)
T 2xt9_B 78 NREPVD-SAVLANGDEVQI 95 (115)
T ss_dssp TTEECS-EEEECTTCEEEE
T ss_pred CCEEcc-eEECCCCCEEEE
Confidence 467787 699999999987
No 277
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine aminopeptidase, PITA-bread, transcri; 1.60A {Homo sapiens} PDB: 2v6c_A
Probab=33.64 E-value=41 Score=26.73 Aligned_cols=51 Identities=24% Similarity=0.418 Sum_probs=29.5
Q ss_pred eCCCCCHHHHHHHhHHHHHhh--------------cceeEEecCC--CCC-CCceeC-CCceecCCCeEEE
Q psy2927 67 HTDRRSIEDFCNKLHRTIAKE--------------FKYALVWGSS--VKH-QPQKVG-KEHVLNDEDVVQI 119 (123)
Q Consensus 67 ~~g~~tv~d~a~~IH~d~~~~--------------f~~A~vwg~s--~k~-~~q~vg-~~~~l~d~Dvv~i 119 (123)
+.| .|-.|+|..++.-+.+. |-|..+-+.+ .-| .|. -+ .+.+|++||+|.|
T Consensus 47 kpG-vte~el~~~~~~~i~~~ga~~~~~~~~~~~g~~f~~~vS~N~~v~H~~P~-~~d~~~~L~~GDiV~I 115 (401)
T 2q8k_A 47 SSG-VSVLSLCEKGDAMIMEETGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPL-KSDQDYILKEGDLVKI 115 (401)
T ss_dssp C-C-CBHHHHHHHHHHHHHHHHHTSSTTCTTCCEEEEEEEEEEETTEEECCCCC-TTSCCCBCCTTCEEEE
T ss_pred cCC-CcHHHHHHHHHHHHHHcCChhhcccccccCCCCCCcEEeCCcccccCCCC-CCCCCcccCCCCEEEE
Confidence 355 89999999988877752 2233222111 011 110 13 2478999999988
No 278
>2v31_A Ubiquitin-activating enzyme E1 X; ligase, phosphorylation, catalytic domain, heteronuclear first catalytic cysteine half-domain, E1 protein; NMR {Mus musculus}
Probab=33.42 E-value=20 Score=23.86 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=11.5
Q ss_pred CCceecCCCeEEE
Q psy2927 107 KEHVLNDEDVVQI 119 (123)
Q Consensus 107 ~~~~l~d~Dvv~i 119 (123)
..|-|+|||.|.|
T Consensus 38 ~~H~l~dGD~V~F 50 (112)
T 2v31_A 38 ARHGFETGDFVSF 50 (112)
T ss_dssp CCCCCCTTCEEEE
T ss_pred CccCCcCCCEEEE
Confidence 5699999999987
No 279
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics center for infectious DI protease, hydrolase; 2.15A {Mycobacterium abscessus}
Probab=32.81 E-value=77 Score=23.56 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHhHHHHHhh-----------cceeEEecCCCCCCCceeCC-CceecCCCeEEE
Q psy2927 68 TDRRSIEDFCNKLHRTIAKE-----------FKYALVWGSSVKHQPQKVGK-EHVLNDEDVVQI 119 (123)
Q Consensus 68 ~g~~tv~d~a~~IH~d~~~~-----------f~~A~vwg~s~k~~~q~vg~-~~~l~d~Dvv~i 119 (123)
.| .|-.|++..++..+.+. |-.....|.++. .+.-... +.+|++||+|.|
T Consensus 63 ~G-~tE~el~~~~~~~~~~~G~~~~~~~~~~f~~iv~~g~n~~-~~H~~p~~~~~l~~Gd~v~i 124 (286)
T 3tav_A 63 AG-VSTLELDQVAESVIREAGAVPSFLGYHGFPASICSSVNDQ-VVHGIPSATAVLADGDLVSI 124 (286)
T ss_dssp TT-CBHHHHHHHHHHHHHHTTCEETTTTGGGCCSSEEEEETTB-CSCCCCCTTCBCCTTCEEEE
T ss_pred CC-CcHHHHHHHHHHHHHHcCCcccccccCCCCCceEEecCcc-ccCCCCCCCcccCCCCEEEE
Confidence 45 89999999999888763 222233343221 1112223 789999999987
No 280
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=32.66 E-value=22 Score=24.75 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.2
Q ss_pred CCceeCC--CceecCCCeEEE
Q psy2927 101 QPQKVGK--EHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~--~~~l~d~Dvv~i 119 (123)
.|+++.. .+.|.+||+|.|
T Consensus 112 Ng~~i~~~~~~~L~~GD~I~i 132 (164)
T 1g3g_A 112 NGQKVEKNSNQLLSQGDEITV 132 (164)
T ss_dssp TTEEECTTEEEECCTTCEEEE
T ss_pred CCEEcCCCCceEcCCCCEEEE
Confidence 4688887 599999999988
No 281
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=32.07 E-value=1e+02 Score=19.87 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=41.3
Q ss_pred ceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhc----------------ceeEEecCCCCCCCceeC----
Q psy2927 47 TRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEF----------------KYALVWGSSVKHQPQKVG---- 106 (123)
Q Consensus 47 irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f----------------~~A~vwg~s~k~~~q~vg---- 106 (123)
++++.+.-+. ..-++.|+.. +||.||=.+|+..+.-.- .+.++ |.|++.-
T Consensus 8 M~I~Vk~l~g---~~~~v~V~~~-~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li------~~Gk~L~dD~~ 77 (105)
T 1v2y_A 8 MTVRVCKMDG---EVMPVVVVQN-ATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT------SAGEKLTEDRK 77 (105)
T ss_dssp EEEEEECSSS---CEEEEEECTT-CBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEE------SSSCEECCSSS
T ss_pred EEEEEEecCC---CEEEEEECCC-ChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEE------eCCcCccCCcC
Confidence 4455543322 3446888887 999999999998763110 12332 3343332
Q ss_pred --CCceecCCCeEEEEec
Q psy2927 107 --KEHVLNDEDVVQIVKK 122 (123)
Q Consensus 107 --~~~~l~d~Dvv~i~~~ 122 (123)
.+|-+++||.|.++.+
T Consensus 78 tL~dygI~~g~~l~lv~~ 95 (105)
T 1v2y_A 78 KLRDYGIRNRDEVSFIKK 95 (105)
T ss_dssp BHHHHTCCSSEEEEEEEC
T ss_pred CHHHcCCCCCCEEEEEeh
Confidence 3578899999999864
No 282
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR {Homo sapiens}
Probab=31.91 E-value=39 Score=20.88 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=17.0
Q ss_pred CCCCceeCC-CceecCCCeEEEEec
Q psy2927 99 KHQPQKVGK-EHVLNDEDVVQIVKK 122 (123)
Q Consensus 99 k~~~q~vg~-~~~l~d~Dvv~i~~~ 122 (123)
-|.|...+. .-.|+.||+|+++.+
T Consensus 13 Dy~p~~~~~~ei~lk~Gd~VeVl~k 37 (71)
T 1v1c_A 13 DYLPLGAEQDAITLREGQYVEVLDA 37 (71)
T ss_dssp CBCCCSCCTTBCCBCTTCEEEEEEE
T ss_pred cccccCCCcceeeecCCCEEEEEEc
Confidence 344455555 556999999999865
No 283
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=31.38 E-value=17 Score=24.47 Aligned_cols=19 Identities=11% Similarity=0.403 Sum_probs=15.7
Q ss_pred CCceeC----------CCceecCCCeEEE
Q psy2927 101 QPQKVG----------KEHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg----------~~~~l~d~Dvv~i 119 (123)
.++++. ..+.|++||+|+|
T Consensus 81 Ng~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 81 NSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp TTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred CCEECcCcccccccCCceEECCCCCEEEE
Confidence 457776 4899999999987
No 284
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=31.25 E-value=19 Score=24.63 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.5
Q ss_pred CCceeCCCceecCCCeEEE
Q psy2927 101 QPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~~~~l~d~Dvv~i 119 (123)
.++++. .+.|.+||+|+|
T Consensus 113 Ng~~i~-~~~L~~GD~I~i 130 (143)
T 2kb3_A 113 NREPRN-AQVMQTGDEIQI 130 (143)
T ss_dssp TTEECS-EEECCTTEEEEE
T ss_pred CCEEcc-eEECCCCCEEEE
Confidence 468887 689999999987
No 285
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A 1xgo_A 1wkm_A 2dfi_A
Probab=30.79 E-value=74 Score=23.96 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHhHHHHHhh-----cceeEEecCCCCCCCceeCCCceecCCCeEEE
Q psy2927 68 TDRRSIEDFCNKLHRTIAKE-----FKYALVWGSSVKHQPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 68 ~g~~tv~d~a~~IH~d~~~~-----f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i 119 (123)
.| .|-.|++..++..+.+. |-...=-+...-|.--.-+-+.+|++||+|.|
T Consensus 26 pG-~te~el~~~~~~~~~~~G~~~~fp~~vs~n~~~~H~~p~~~~~~~L~~GDiv~i 81 (295)
T 1xgs_A 26 PG-MLLLELAESIEKMIMELGGKPAFPVNLSINEIAAHYTPYKGDTTVLKEGDYLKI 81 (295)
T ss_dssp TT-CBHHHHHHHHHHHHHHTTCEESSCCEEEETTEEECCCCCTTCCCBCCTTCEEEE
T ss_pred CC-CCHHHHHHHHHHHHHHcCCCCCCCcEEeeCCccccccCCCCCCccccCCCEEEE
Confidence 45 89999999999988763 32111001011111000113678999999987
No 286
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=30.75 E-value=19 Score=28.25 Aligned_cols=16 Identities=6% Similarity=-0.035 Sum_probs=10.6
Q ss_pred eEEEeecCCcChHHHHH
Q psy2927 22 CVPLSAHHKWNFDDLLE 38 (123)
Q Consensus 22 ~v~ISA~~~~gld~L~e 38 (123)
.+.+||.. .|+++...
T Consensus 151 f~eTSAkd-~nV~eAFs 166 (331)
T 3r7w_B 151 FYLTSIFD-HSIYEAFS 166 (331)
T ss_dssp EECCCSSS-SHHHHHHH
T ss_pred EEEeccCC-CcHHHHHH
Confidence 45599987 47866443
No 287
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=30.74 E-value=18 Score=26.68 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=15.7
Q ss_pred CCceeCCC--ceecCCCeEEE
Q psy2927 101 QPQKVGKE--HVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~~--~~l~d~Dvv~i 119 (123)
.|+++... +.|.+||+|+|
T Consensus 169 NG~rI~~~~~~~L~~GD~I~f 189 (205)
T 3elv_A 169 NNVVIPGARYIELRSGDVLTL 189 (205)
T ss_dssp TTEECCBTSCEECCTTCEEES
T ss_pred CCEECCCCceeECCCCCEEEE
Confidence 46888765 78999999987
No 288
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=30.61 E-value=24 Score=27.59 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=17.1
Q ss_pred CCceeCCCceecCCCeEEE
Q psy2927 101 QPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~~~~l~d~Dvv~i 119 (123)
.|++++..+.|.+||+|+|
T Consensus 353 ng~~i~~~~~L~~gd~i~~ 371 (388)
T 2ff4_A 353 QHERIRSAVTLNDGDHIRI 371 (388)
T ss_dssp TTEECSSEEEECTTCEEEE
T ss_pred CCEECCCceECCCCCEEEE
Confidence 5689988999999999988
No 289
>4fuk_A Methionine aminopeptidase; structural genomics consortium, SGC, hydrolase; 1.75A {Trypanosoma brucei brucei}
Probab=29.94 E-value=43 Score=25.77 Aligned_cols=52 Identities=8% Similarity=0.111 Sum_probs=32.6
Q ss_pred EeCCCCCHHHHHHHhHHHHHhhcc-----------eeEEecCCCCCCCceeCCCceecCCCeEEE
Q psy2927 66 LHTDRRSIEDFCNKLHRTIAKEFK-----------YALVWGSSVKHQPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 66 l~~g~~tv~d~a~~IH~d~~~~f~-----------~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i 119 (123)
++.| .|-.+++..+|..+.+.-- ....+|.++- .+--..-+..|++||+|.|
T Consensus 90 ikpG-~te~el~~~~~~~~~~~g~~~~~~~~~~fp~iv~~g~n~~-~~H~~~~~~~l~~GD~v~i 152 (337)
T 4fuk_A 90 AKPG-ITTDELDRIVHEATVERNMYPSPLNYYGFPKSVCTSVNEV-ICHGIPDSRELEEGDILNI 152 (337)
T ss_dssp CCTT-CBHHHHHHHHHHHHHHTTCEETTTTGGGCCSSSEEEETTE-EECCCCCSCBCCTTCEEEE
T ss_pred ccCC-CCHHHHHHHHHHHHHHcCCCccCCCCCCcCceeecccccc-ccCCCCCCccccCCCEEEE
Confidence 3455 8999999999988876421 1222232211 1123456778999999987
No 290
>4b6a_t Probable metalloprotease ARX1; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae}
Probab=29.86 E-value=38 Score=29.03 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=14.7
Q ss_pred eCCCCCHHHHHHHhHHHHHh
Q psy2927 67 HTDRRSIEDFCNKLHRTIAK 86 (123)
Q Consensus 67 ~~g~~tv~d~a~~IH~d~~~ 86 (123)
..| .|+.|+|...++-+.+
T Consensus 77 kpg-a~I~ELCe~GD~~I~e 95 (614)
T 4b6a_t 77 QRQ-LTVPELCLLTDSFILT 95 (614)
T ss_dssp TCC-CBTTHHHHHHHHHHHH
T ss_pred CCC-CcHHHHHHHHHHHHHH
Confidence 344 8999999887777765
No 291
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=29.66 E-value=36 Score=21.34 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=11.5
Q ss_pred CCceecCCCeEEE
Q psy2927 107 KEHVLNDEDVVQI 119 (123)
Q Consensus 107 ~~~~l~d~Dvv~i 119 (123)
.||.+.|||+++|
T Consensus 68 ~d~~ItnGD~Lei 80 (81)
T 2bps_A 68 SDCGITNGDRLEI 80 (81)
T ss_dssp GGGTCCTTCEEEE
T ss_pred eeCCcCCCCEEEE
Confidence 4899999999987
No 292
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=29.34 E-value=80 Score=17.76 Aligned_cols=57 Identities=9% Similarity=0.216 Sum_probs=32.5
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhh-cceeEEe-cCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKE-FKYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~-f~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
.+-++.. +|+.++-.+|+....-. -..-.++ |+... ..+. =.+|-+.+|+.|.++.+
T Consensus 14 ~~~v~~~-~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~t-L~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 14 EIDIEPT-DKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKT-AADYKILGGSVLHLVLA 72 (76)
T ss_dssp EEECCTT-CBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSB-GGGGTCCTTCEEEEEEC
T ss_pred EEEECCC-ChHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCc-HHHcCCCCCCEEEEEEe
Confidence 4566675 89999999998765210 0111222 22111 1121 23567789999988754
No 293
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=28.89 E-value=18 Score=25.25 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=15.7
Q ss_pred CCceeCC--CceecCCCeEEE
Q psy2927 101 QPQKVGK--EHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~--~~~l~d~Dvv~i 119 (123)
.|+++.. .+.|.+||+|.|
T Consensus 122 Ng~ri~~~~~~~L~~GD~I~~ 142 (158)
T 3els_A 122 NNVVIPGARYIELRSGDVLTL 142 (158)
T ss_dssp TTEECCTTCCEECCTTEEEES
T ss_pred CCEEcCCCceEEcCCCCEEEE
Confidence 4688866 589999999987
No 294
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=28.66 E-value=27 Score=22.74 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=14.5
Q ss_pred CCCceeCCC-----ceecCCCeEEEE
Q psy2927 100 HQPQKVGKE-----HVLNDEDVVQIV 120 (123)
Q Consensus 100 ~~~q~vg~~-----~~l~d~Dvv~i~ 120 (123)
|.|+|+..+ -.|+|||+|..+
T Consensus 65 fDG~rI~~~~TP~~L~meD~DiID~~ 90 (95)
T 2l76_A 65 FGETELSPTATPRTLKLGVADIIDCV 90 (95)
T ss_dssp ETTEECCTTSCHHHHTCCSSCEEEEE
T ss_pred ECCcCCCCCCCHhHcCCCCCCEEEEE
Confidence 355555544 358999999875
No 295
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=28.50 E-value=2e+02 Score=22.72 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=16.4
Q ss_pred CcccEEEeCCCCCHHHHHHHh
Q psy2927 60 YQSPVVLHTDRRSIEDFCNKL 80 (123)
Q Consensus 60 ~~~~~~l~~g~~tv~d~a~~I 80 (123)
..+|++|..|-+|.+|+...+
T Consensus 134 ~gKPviLstGmstl~Ei~~Av 154 (350)
T 3g8r_A 134 SDKPVVASTAGARREDIDKVV 154 (350)
T ss_dssp SCSCEEEECTTCCHHHHHHHH
T ss_pred hCCcEEEECCCCCHHHHHHHH
Confidence 455999999988998886544
No 296
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2, protein structure initiative; 2.18A {Encephalitozoon cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Probab=27.26 E-value=89 Score=24.50 Aligned_cols=53 Identities=15% Similarity=0.317 Sum_probs=31.5
Q ss_pred EeCCCCCHHHHHHHhHHHHHhhcc--------eeEEecCC--CCCCCceeCC-CceecCCCeEEE
Q psy2927 66 LHTDRRSIEDFCNKLHRTIAKEFK--------YALVWGSS--VKHQPQKVGK-EHVLNDEDVVQI 119 (123)
Q Consensus 66 l~~g~~tv~d~a~~IH~d~~~~f~--------~A~vwg~s--~k~~~q~vg~-~~~l~d~Dvv~i 119 (123)
++.| .|-.|+|..++..+.+... |--..|.+ .-|.--.-|. +.+|++||+|.|
T Consensus 68 ikpG-~te~El~~~ie~~~~~~g~~~~~~~~aFpt~~s~N~~~~H~~P~~~d~~~~L~~GDlV~I 131 (360)
T 2nw5_A 68 VRPG-ITLLEIVRSIEDSTRTLLKGERNNGIGFPAGMSMNSCAAHYTVNPGEQDIVLKEDDVLKI 131 (360)
T ss_dssp CCTT-CBHHHHHHHHHHHHHHHTTTSGGGGEEEEEEEEETTEEECCCCCTTCCCCBCCTTCEEEE
T ss_pred ccCC-CCHHHHHHHHHHHHHHhcCCCccCccccCceeeccccccCCCCCcccCCcCcCCCCEEEE
Confidence 3455 8999999999988877521 11112211 1121111122 678999999988
No 297
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=26.97 E-value=15 Score=28.61 Aligned_cols=23 Identities=9% Similarity=-0.048 Sum_probs=18.3
Q ss_pred eEEEeecCCcChHHHHHHHHHhh
Q psy2927 22 CVPLSAHHKWNFDDLLEKMWEYL 44 (123)
Q Consensus 22 ~v~ISA~~~~gld~L~e~i~~~L 44 (123)
...+||..+.|++.+.+.+.+.+
T Consensus 294 ~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 294 SHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEeecCHHHHHHHHHHHHHH
Confidence 45699999999988887777654
No 298
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=26.94 E-value=2e+02 Score=22.98 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=16.7
Q ss_pred cccEEEeCCCCCHHHHHHHhH
Q psy2927 61 QSPVVLHTDRRSIEDFCNKLH 81 (123)
Q Consensus 61 ~~~~~l~~g~~tv~d~a~~IH 81 (123)
.+|++|..|-+|.+|+...+-
T Consensus 158 gKPViLStGmaTl~Ei~~Ave 178 (385)
T 1vli_A 158 NRPMIFSTAGAEISDVHEAWR 178 (385)
T ss_dssp CSCEEEECTTCCHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHH
Confidence 459999999789999865554
No 299
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=26.61 E-value=41 Score=20.67 Aligned_cols=22 Identities=5% Similarity=-0.014 Sum_probs=17.2
Q ss_pred CCCCceeCCCceecCCCeEEEE
Q psy2927 99 KHQPQKVGKEHVLNDEDVVQIV 120 (123)
Q Consensus 99 k~~~q~vg~~~~l~d~Dvv~i~ 120 (123)
.-.|+.+-.++.|..||+|+|.
T Consensus 29 ~VNg~~~~~~~~v~~gd~I~v~ 50 (92)
T 2k6p_A 29 WLNGSCAKASKEVKAGDTISLH 50 (92)
T ss_dssp EETTEECCTTCBCCTTCEEEEC
T ss_pred EECCEEcCCCCCcCCCCEEEEE
Confidence 3466667778999999999873
No 300
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=25.53 E-value=1.1e+02 Score=18.27 Aligned_cols=70 Identities=11% Similarity=0.220 Sum_probs=37.8
Q ss_pred ceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhc-ceeEEe-cCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 47 TRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEF-KYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 47 irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f-~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
+.++.+..+. ..-.+-+... .||.++=.+|+....-.- ..-+++ |+--. ..+ -=.+|-+++|++|.++.+
T Consensus 18 m~i~Vk~~~g---~~~~l~v~~~-~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~-tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 18 MQIFVNTLTG---THITLEVEPS-DTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGR-TLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp EEEEEECTTS---CEEEEEECTT-CBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTC-BTGGGTCCTTCEEEEECC
T ss_pred EEEEEEeCCC---CEEEEEECCC-CCHHHHHHHHHhhhCCChhhEEEEECCeECC-CcC-cHHHCCCCCCCEEEEEEe
Confidence 3455554332 1224666675 899999888887543100 111222 22111 112 223677899999998754
No 301
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=25.51 E-value=1.1e+02 Score=21.30 Aligned_cols=40 Identities=15% Similarity=0.427 Sum_probs=24.2
Q ss_pred CCCCCCcccEEEeCCCCCHHHHHHHhHHHHH------hhcceeEEec
Q psy2927 55 GQLPDYQSPVVLHTDRRSIEDFCNKLHRTIA------KEFKYALVWG 95 (123)
Q Consensus 55 g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~------~~f~~A~vwg 95 (123)
|..|..+-.+=-=.. +|..|++..|-.-.. ..|.||.|+=
T Consensus 49 ~~~P~~ElQIYTW~d-aTLrEL~~Lvk~~~p~ar~~gtrl~F~~Vyp 94 (143)
T 4a6q_A 49 GNVPSSELQIYTWMD-ATLKELTSLVKEVYPEARKKGTHFNFAIVFM 94 (143)
T ss_dssp TCCCSCCEEEEECTT-CBHHHHHHHHHHHCGGGGSTTCEEEEEEEEE
T ss_pred CCCCCceeEEeeCCC-CCHHHHHHHHHHhCccccCCCCEEEEEEEcc
Confidence 444422223333344 899999977754433 3688899874
No 302
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=24.66 E-value=1.5e+02 Score=19.19 Aligned_cols=59 Identities=10% Similarity=0.250 Sum_probs=33.5
Q ss_pred cccEEEeCCCCCHHHHHHHhHHHHHhhcceeEE-e-cCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 61 QSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALV-W-GSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 61 ~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~v-w-g~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
...+-|++. .+...+-..+.....-....-+. | |. +..+.+--.++-|+|||+|..+.+
T Consensus 42 ~i~fkIk~t-t~l~kL~~ay~ek~gi~~~~~rF~FdG~--rl~~~~Tp~dl~medgD~Idv~~~ 102 (106)
T 2eke_C 42 EIFFKIKKT-TPLRRLMEAFAKRQGKEMDSLRFLYDGI--RIQADQTPEDLDMEDNDIIEAHRE 102 (106)
T ss_dssp EEEEEEETT-SCTHHHHHHHHHHHTCCGGGEEEEETTE--ECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEEeCCC-CHHHHHHHHHHHHhCCCcccEEEEECCe--EcCCCCCHHHcCCCCCCEEEEEee
Confidence 336777786 78777766655444322221111 1 21 122333446788999999998753
No 303
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=24.28 E-value=33 Score=24.04 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=15.1
Q ss_pred CCceeCCCceecCCCeEEE
Q psy2927 101 QPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 101 ~~q~vg~~~~l~d~Dvv~i 119 (123)
.++++. .+.|.+||+|+|
T Consensus 122 Ng~~i~-~~~L~~GD~I~i 139 (162)
T 2kfu_A 122 NREPVD-SAVLANGDEVQI 139 (162)
T ss_dssp TTBCCS-EEECCSSCEEEE
T ss_pred CCEEcc-eEECCCCCEEEE
Confidence 457777 589999999988
No 304
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Probab=24.26 E-value=85 Score=22.79 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=30.6
Q ss_pred eCCCCCHHHHHHHhHHHHHhhc-----------ceeEEecCCCCCCCceeCCCceecCCCeEEE
Q psy2927 67 HTDRRSIEDFCNKLHRTIAKEF-----------KYALVWGSSVKHQPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 67 ~~g~~tv~d~a~~IH~d~~~~f-----------~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i 119 (123)
+.| .|-.+++..++..+.+.= -+...-|.++. .+....-+-+|++||+|.|
T Consensus 32 kpG-~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~v~~g~~~~-~~H~~~~~~~l~~Gdlv~i 93 (264)
T 3tb5_A 32 KPG-ITSWDIEVFVRDFIESHGGVAAQIGYEGYKYATCCSINDE-ICHGFPRKKVLKDGDLIKV 93 (264)
T ss_dssp CTT-CBHHHHHHHHHHHHHHTTCEETTTTGGGCCCSEEEEETTE-EECCCCCSCBCCTTCEEEE
T ss_pred cCC-CCHHHHHHHHHHHHHHcCCCcccccccCCCcceEECCccc-ccCCCCCCccccCCCEEEE
Confidence 345 788999988888776632 12222232211 1122345678999999987
No 305
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=24.25 E-value=1.1e+02 Score=17.82 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=37.7
Q ss_pred ceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhc-ceeEEe-cCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 47 TRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEF-KYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 47 irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f-~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
+.++.+..+. ..-.+-+... .||.++=.+|+....-.. ..-+++ |+-.. . .+-=.+|-+++|+.|.++.+
T Consensus 13 m~i~vk~~~g---~~~~~~v~~~-~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~-d-~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 13 MLIKVKTLTG---KEIEIDIEPT-DKVERIKERVEEKEGIPPQQQRLIYSGKQMN-D-EKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp EEEEEECTTS---CEEEEEECTT-CBHHHHHHHHHHHHCCCGGGCCEEETTEECC-T-TSBGGGGTCCTTCEEEECCC
T ss_pred EEEEEEcCCC---CEEEEEECCC-CCHHHHHHHHHHHHCcCHHHEEEEECCeECC-C-CCcHHHcCCCCCCEEEEEEe
Confidence 4555554332 1235667775 899999989887642100 011222 22111 1 12223677889999988653
No 306
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=23.45 E-value=83 Score=19.27 Aligned_cols=68 Identities=1% Similarity=0.124 Sum_probs=36.3
Q ss_pred ceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhh-cceeEEe-cCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 47 TRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKE-FKYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 47 irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~-f~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
+.++.+. |+ .-.+-++.. .||.++-.+|.....=. -..-+++ |+-.. ..+.+ .+|-+++|+.|.++.+
T Consensus 20 m~I~Vk~-g~----~~~l~v~~~-~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL-~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 20 MQLFVRA-QE----LHTFEVTGQ-ETVAQIKAHVASLEGIAPEDQVVLLAGAPLE-DEATL-GQCGVEALTTLEVAGR 89 (93)
T ss_dssp CEEEEES-SS----EEEEECCSS-CBHHHHHHHHHHHHTCCGGGCEEEETTEECC-TTSBH-HHHTCCSSCEEEEECC
T ss_pred EEEEEEC-CC----EEEEEeCCC-CcHHHHHHHHHHHhCcChhHEEEEECCEECC-CCCcH-HHCCCCCCCEEEEEEe
Confidence 4555555 43 224566665 89999998988764210 0011121 22111 11212 2566789999988754
No 307
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=22.95 E-value=1.8e+02 Score=22.85 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=17.0
Q ss_pred CcccEEEeCCCCCHHHHHHHhH
Q psy2927 60 YQSPVVLHTDRRSIEDFCNKLH 81 (123)
Q Consensus 60 ~~~~~~l~~g~~tv~d~a~~IH 81 (123)
..+|++|..|-+|.+|+...+.
T Consensus 147 ~gkPviLstGmat~~Ei~~Ave 168 (349)
T 2wqp_A 147 FGKPIILSTGMNSIESIKKSVE 168 (349)
T ss_dssp TCSCEEEECTTCCHHHHHHHHH
T ss_pred cCCeEEEECCCCCHHHHHHHHH
Confidence 3459999999789999865554
No 308
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=22.72 E-value=40 Score=21.20 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=18.2
Q ss_pred eEEEeecCCcChHHHHHHHHHhhc
Q psy2927 22 CVPLSAHHKWNFDDLLEKMWEYLK 45 (123)
Q Consensus 22 ~v~ISA~~~~gld~L~e~i~~~L~ 45 (123)
.+.|||...+.-.+|++.|.+.|.
T Consensus 51 qitisaendeqakelleliarllq 74 (96)
T 2jvf_A 51 QITISAENDEQAKELLELIARLLQ 74 (96)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEEecChHHHHHHHHHHHHHHH
Confidence 578999998877777777666553
No 309
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=21.97 E-value=39 Score=22.09 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=12.8
Q ss_pred CCCceecCCCeEEEE
Q psy2927 106 GKEHVLNDEDVVQIV 120 (123)
Q Consensus 106 g~~~~l~d~Dvv~i~ 120 (123)
-.+|.|+|||.|+|.
T Consensus 82 a~~~~v~dGD~i~~~ 96 (101)
T 3u7z_A 82 ADQTPVSDGDAFELT 96 (101)
T ss_dssp GGGCBCCTTCEEEEE
T ss_pred hhheEecCCCEEEEE
Confidence 357999999999985
No 310
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=21.64 E-value=1.3e+02 Score=18.83 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=25.4
Q ss_pred CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 19 IPHCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 19 ~~~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
|...|.|-...|..+..|.+.|.+.|++
T Consensus 12 ~~~tvairvp~~~~y~~L~~~l~~kL~l 39 (83)
T 1oey_A 12 YKYTVVMKTQPGLPYSQVRDMVSKKLEL 39 (83)
T ss_dssp SSSEEEEEECTTCCHHHHHHHHHHHTTC
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4468999999999999999999999987
No 311
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=21.64 E-value=73 Score=24.98 Aligned_cols=26 Identities=15% Similarity=-0.005 Sum_probs=22.0
Q ss_pred CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927 21 HCVPLSAHHKWNFDDLLEKMWEYLKL 46 (123)
Q Consensus 21 ~~v~ISA~~~~gld~L~e~i~~~L~~ 46 (123)
.+.++||.+|+||.+=++-+.+.+..
T Consensus 283 ~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 283 LVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred EEEecccCCCcCHHHHHHHHHHHHHh
Confidence 47889999999999988888887753
No 312
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=21.39 E-value=1.4e+02 Score=17.84 Aligned_cols=57 Identities=12% Similarity=0.246 Sum_probs=32.3
Q ss_pred cEEEeCCCCCHHHHHHHhHHHHHhhc-ceeEEe-cCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927 63 PVVLHTDRRSIEDFCNKLHRTIAKEF-KYALVW-GSSVKHQPQKVGKEHVLNDEDVVQIVKK 122 (123)
Q Consensus 63 ~~~l~~g~~tv~d~a~~IH~d~~~~f-~~A~vw-g~s~k~~~q~vg~~~~l~d~Dvv~i~~~ 122 (123)
.+-+... .||.++=.+|+....-.- ..-+++ |+-.. ..+ -=.+|-+.+|++|.++.+
T Consensus 15 ~~~v~~~-~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~-d~~-tL~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 15 TLEVEPS-DTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGR-TLSDYNIQKESTLHLVLR 73 (96)
T ss_dssp EEECCTT-CBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTS-BTGGGTCCTTCEEEEEEC
T ss_pred EEEECCC-CCHHHHHHHHHhhhCCChhHEEEEECCEECC-CCC-cHHHcCCCCCCEEEEEEE
Confidence 4566665 899999888887653100 111222 22111 112 223577889999998754
No 313
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=21.06 E-value=57 Score=21.90 Aligned_cols=22 Identities=5% Similarity=0.093 Sum_probs=17.9
Q ss_pred CCCCceeCCCceecCCCeEEEE
Q psy2927 99 KHQPQKVGKEHVLNDEDVVQIV 120 (123)
Q Consensus 99 k~~~q~vg~~~~l~d~Dvv~i~ 120 (123)
...|+.+-.++.|..||+|+|.
T Consensus 37 ~VNG~~vk~s~~V~~GD~I~I~ 58 (133)
T 1dm9_A 37 HYNGQRSKPSKIVELNATLTLR 58 (133)
T ss_dssp EETTEECCTTCBCCTTCEEEEE
T ss_pred EECCEEcCCCCEeCCCCEEEEE
Confidence 3467778888999999999984
No 314
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C; 1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB: 1qxw_A* 1qxz_A*
Probab=21.04 E-value=80 Score=22.66 Aligned_cols=50 Identities=12% Similarity=0.166 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHhHHHHHhh-----------cceeEEecCCCCCCCceeCCCceecCCCeEEE
Q psy2927 68 TDRRSIEDFCNKLHRTIAKE-----------FKYALVWGSSVKHQPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 68 ~g~~tv~d~a~~IH~d~~~~-----------f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i 119 (123)
.| .|-.|++..++..+.+. |-....-|.++.. +.-...+..|++||+|.|
T Consensus 32 ~G-~te~el~~~~~~~~~~~g~~~~~~~~~~f~~~v~~g~n~~~-~H~~p~~~~l~~gd~v~i 92 (252)
T 1qxy_A 32 PG-ITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEV-AHGIPSKRVIREGDLVNI 92 (252)
T ss_dssp TT-CBHHHHHHHHHHHHHHHTCEEHHHHHHCCSSSSEEEETTEE-ECCCCCSCBCCTTCEEEE
T ss_pred CC-CcHHHHHHHHHHHHHHcCCcccccccCCCCcceEEcCCccc-cCCCCCCcCcCCCCEEEE
Confidence 45 78899999998887652 2111111211100 001123778999999987
No 315
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold, structur genomics, structural genomics consortium, SGC, hydrolase; 1.95A {Plasmodium falciparum}
Probab=20.79 E-value=99 Score=24.42 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=30.5
Q ss_pred eCCCCCHHHHHHHhHHHHHhhcce-----------eEEecCCCCCCCceeCCCceecCCCeEEE
Q psy2927 67 HTDRRSIEDFCNKLHRTIAKEFKY-----------ALVWGSSVKHQPQKVGKEHVLNDEDVVQI 119 (123)
Q Consensus 67 ~~g~~tv~d~a~~IH~d~~~~f~~-----------A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i 119 (123)
+.| .|-.|++..+|..+.+.=.+ -.-.|.++.. +.-..-+.+|++||+|.|
T Consensus 131 kpG-vTE~El~~~~~~~~~~~Ga~ps~l~y~~Fp~iv~sg~N~~i-~H~~p~~r~L~~GDiV~i 192 (368)
T 3s6b_A 131 SPG-VTTDEIDRKVHEFIIKNNAYPSTLNYYKFPKSCCTSVNEIV-CHGIPDYRPLKSGDIINI 192 (368)
T ss_dssp CTT-CBHHHHHHHHHHHHHHTTCEETTTTGGGCCSSEEEEETTEE-ECCCCCSCBCCTTCEEEE
T ss_pred cCC-CCHHHHHHHHHHHHHHcCCccccccccCCCCeEEEcCcccc-ccCCCCCccccCCCEEEE
Confidence 345 89999999999988873211 1112211110 011224678999999987
No 316
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=20.39 E-value=29 Score=28.70 Aligned_cols=16 Identities=13% Similarity=0.245 Sum_probs=12.0
Q ss_pred CcccCCCCCHhhHHHH
Q psy2927 1 MQKVSDQISIEELDII 16 (123)
Q Consensus 1 V~NKiD~~~~e~l~~l 16 (123)
|+||+|+++.+++.++
T Consensus 224 VlNK~Dl~~~~el~~~ 239 (550)
T 2qpt_A 224 VLNKADMVETQQLMRV 239 (550)
T ss_dssp EEECGGGSCHHHHHHH
T ss_pred EEECCCccCHHHHHHH
Confidence 6899999987665443
No 317
>4a94_C Carboxypeptidase inhibitor; hydrolase-hydrolase inhibitor complex, CPA4, NVCI, PCI, LCI; 1.70A {Nerita versicolor}
Probab=20.11 E-value=47 Score=18.78 Aligned_cols=16 Identities=31% Similarity=0.684 Sum_probs=11.5
Q ss_pred cceeEEecCCCCCCCceeCC
Q psy2927 88 FKYALVWGSSVKHQPQKVGK 107 (123)
Q Consensus 88 f~~A~vwg~s~k~~~q~vg~ 107 (123)
+..--||- |.|||||-
T Consensus 36 yecqhvwt----fegqrvgc 51 (53)
T 4a94_C 36 YECQHVWT----FEGQRVGC 51 (53)
T ss_dssp EEEEEEEE----ETTEEECC
T ss_pred ceeeEEEE----ECCeEeec
Confidence 34457884 78999983
Done!