RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2927
(123 letters)
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 76
Score = 47.8 bits (114), Expect = 4e-09
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 50 YTKPKGQ-LPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKE 108
T G LP ++ + D K+H + K F YA+ + ++VG++
Sbjct: 12 LTDQFGNVLPH---VFLMK-KGSTPRDLAFKVHTDLGKGFLYAINARTK-----RRVGED 62
Query: 109 HVLNDEDVVQIV 120
+ L D+V+IV
Sbjct: 63 YELQFNDIVKIV 74
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 30.8 bits (68), Expect = 0.027
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPK 54
+ + + + +P+SA L E + ++ T PK
Sbjct: 129 EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPPPEMPK 177
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 30.5 bits (67), Expect = 0.033
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 11 EELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYL 44
E + S+ K D L +K+ +
Sbjct: 154 EAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 187
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 29.3 bits (64), Expect = 0.082
Identities = 9/46 (19%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 1 MQKVSDQISIE-ELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLK 45
+Q+V + ++ + E+ + +P+SA N + L +++E ++
Sbjct: 137 VQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 182
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 28.4 bits (62), Expect = 0.18
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 10 IEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEY 43
+ + + LSA + F+DL +E+
Sbjct: 207 CSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 28.4 bits (62), Expect = 0.21
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 1 MQKVSDQISIEELDIIYKIPH----CVPLSAHHKWNFDDLLEKMWEYLK 45
K+ + E L+ + P+SA + +LL ++ L+
Sbjct: 124 ANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE 172
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 28.2 bits (61), Expect = 0.22
Identities = 4/39 (10%), Positives = 13/39 (33%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYL 44
+ +++ + LSA + +L + +
Sbjct: 131 PEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 169
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 27.8 bits (60), Expect = 0.28
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 17 YKIPHCVPLSAHHKWNFDDLLEKMWEYLK 45
+P+SA H N D +LE + + L+
Sbjct: 136 LGFGEPIPVSAEHNINLDTMLETIIKKLE 164
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 28.0 bits (61), Expect = 0.29
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 1 MQKVSDQISIEELDIIYKIP--------HCVPLSAHHKWNFDDLLEKMWEYLK 45
+ VS + ++ + I + +P+SA HK N D L+E + EY+K
Sbjct: 150 VDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 202
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 27.8 bits (60), Expect = 0.34
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 17 YKIPHCVPLSAHHKWNFDDLLEKMWEYLK 45
VP+SA N D + + ++L
Sbjct: 143 MNFLDIVPISAETGLNVDTIAAIVRKHLP 171
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 27.0 bits (58), Expect = 0.57
Identities = 4/36 (11%), Positives = 12/36 (33%)
Query: 10 IEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLK 45
+ + I + S+ K D+ + + +
Sbjct: 159 VRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 26.6 bits (57), Expect = 0.66
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 1 MQKVSDQISIEELDIIYKIP--HCVPLSAHHKWNFDDLLEKMWEYL 44
K ++ I L + + +P+SA + D+L + L
Sbjct: 128 EIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL 173
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 26.1 bits (56), Expect = 1.1
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 21 HCVPLSAHHKWNFDDLLEKMWEYL 44
+P+SA H N D L++ + +++
Sbjct: 170 PIIPISALHGANIDVLVKAIEDFI 193
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 26.2 bits (56), Expect = 1.1
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 10 IEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLK 45
E + SA WN D +++ M
Sbjct: 147 FREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA 182
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 25.7 bits (55), Expect = 1.4
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWE 42
+ V E + + H V +SA + L E ++
Sbjct: 117 VDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYR 158
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 26.0 bits (56), Expect = 1.5
Identities = 9/43 (20%), Positives = 13/43 (30%)
Query: 1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEY 43
K E + VP+SA N + E+ Y
Sbjct: 164 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWY 206
>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG,
phenylalanine-repressible {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 462
Score = 25.6 bits (56), Expect = 1.9
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 13/56 (23%)
Query: 16 IYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRR 71
I ++P PL + D L KP Q P + + L
Sbjct: 9 IDQLPSLPPLPTDLRTRLDAAL-------------AKPAAQQPTWPADQALAMRTV 51
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 25.5 bits (54), Expect = 1.9
Identities = 6/44 (13%), Positives = 13/44 (29%)
Query: 1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYL 44
++ +D + LSA D L + + +
Sbjct: 118 VRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 161
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 23.9 bits (50), Expect = 6.4
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 21 HCVPLSAHHKWNFDDLLEK--------MWEYLKL 46
+P+SA +LL + E LK+
Sbjct: 193 SIIPISAITGEGIPELLTMLMGLAQQYLREQLKI 226
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 24.0 bits (51), Expect = 6.5
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 21 HCVPLSAHHKWNFDDLLEKMWEY 43
VP+ A N E M Y
Sbjct: 185 RFVPVVAPSGDNITHKSENMKWY 207
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 23.7 bits (50), Expect = 7.7
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 21 HCVPLSAHHKWNFDDLLEK 39
+P+SA+ N D ++
Sbjct: 208 KYMPVSAYTGQNVKDRVDS 226
>d1jfma_ d.19.1.1 (A:) NK cell ligand RAE-1 beta {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 174
Score = 23.4 bits (50), Expect = 9.9
Identities = 5/39 (12%), Positives = 14/39 (35%)
Query: 6 DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYL 44
+ ++ ++ + +KW D K ++L
Sbjct: 118 YFFTFYTENMSWRSANDESGVIMNKWKDDGEFVKQLKFL 156
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.419
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 490,634
Number of extensions: 21516
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 42
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)