BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2928
(744 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JX8|A Chain A, Solution Structure Of Hpcif1 Ww Domain
Length = 52
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 33/47 (70%)
Query: 84 LPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGDP 130
LP EL+ GW K WS+RENRPYY+NR + +SLW+MP D I DP
Sbjct: 6 LPEELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLGQHDVISDP 52
>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
Domains By O- Phosphorylated Natural Product Derivatives
Length = 166
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 77 GSYIDHE--LPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS----GFDPIGDP 130
GS++ E LPP GW K S+ R YY+N + S W+ P G+ G + G+P
Sbjct: 1 GSHMADEEKLPP-----GWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 55
>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
Pin1 By Epigallocatechin-3-Gallate
Length = 163
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS----GFDPIGDP 130
+ +LPP GW K S+ R YY+N + S W+ P G+ G + G+P
Sbjct: 4 EEKLPP-----GWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 52
>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
Length = 167
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS----GFDPIGDP 130
+ +LPP GW K S+ R YY+N + S W+ P G+ G + G+P
Sbjct: 8 EEKLPP-----GWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 56
>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
Length = 167
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS----GFDPIGDP 130
+ +LPP GW K S+ R YY+N + S W+ P G+ G + G+P
Sbjct: 8 EEKLPP-----GWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 56
>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS----GFDPIGDP 130
+ +LPP GW K S+ R YY+N + S W+ P G+ G + G+P
Sbjct: 4 EEKLPP-----GWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 52
>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens
pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
Length = 163
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS----GFDPIGDP 130
+ +LPP GW K S+ R YY+N + S W+ P G+ G + G+P
Sbjct: 4 EEKLPP-----GWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 52
>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS----GFDPIGDP 130
+ +LPP GW K S+ R YY+N + S W+ P G+ G + G+P
Sbjct: 4 EEKLPP-----GWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 52
>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS----GFDPIGDP 130
+ +LPP GW K S+ R YY+N + S W+ P G+ G + G+P
Sbjct: 4 EEKLPP-----GWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 52
>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition
By Group Iv Ww Domains
Length = 167
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS----GFDPIGDP 130
+ +LPP GW K S+ R YY+N + S W+ P G+ G + G+P
Sbjct: 8 EEKLPP-----GWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 56
>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor
pdb|3TDB|A Chain A, Human Pin1 Bound To Trans Peptidomimetic Inhibitor
Length = 158
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 83 ELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS----GFDPIGDP 130
+LPP GW K S+ R YY+N + S W+ P G+ G + G+P
Sbjct: 1 KLPP-----GWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 47
>pdb|4AKV|A Chain A, Crystal Structure Of Human Sorting Nexin 33 (Snx33)
pdb|4AKV|B Chain B, Crystal Structure Of Human Sorting Nexin 33 (Snx33)
Length = 386
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 587 LKAVSGSFQAHPPYCEELMEATVGH 611
+A+S SFQ PP+C E + + + H
Sbjct: 233 FQAISHSFQMDPPFCSEALNSAISH 257
>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS----GFDPIGDP 130
+ +LPP GW K S+ R YY+N + + W+ P G+ G + G+P
Sbjct: 4 EEKLPP-----GWEKRMSRSSGRVYYFNHITNAAQWERPSGNSSSGGKNGQGEP 52
>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS----GFDPIGDP 130
+ +LPP GW K S+ R YY N + S W+ P G+ G + G+P
Sbjct: 4 EEKLPP-----GWEKRMSRSSGRVYYANHITNASQWERPSGNSSSGGKNGQGEP 52
>pdb|2JV4|A Chain A, Structure Characterisation Of Pina Ww Domain And
Comparison With Other Group Iv Ww Domains, Pin1 And Ess1
Length = 54
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 77 GSYIDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPI 127
GS ++ LP GW S +N PYY+N A+ ES W+ P + + +
Sbjct: 1 GSMVNTGLP-----AGWEVRHSNSKNLPYYFNPATRESRWEPPADTDMETL 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,902,372
Number of Sequences: 62578
Number of extensions: 1036382
Number of successful extensions: 2142
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2123
Number of HSP's gapped (non-prelim): 24
length of query: 744
length of database: 14,973,337
effective HSP length: 106
effective length of query: 638
effective length of database: 8,340,069
effective search space: 5320964022
effective search space used: 5320964022
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)