BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2928
(744 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H4Z3|PCIF1_HUMAN Phosphorylated CTD-interacting factor 1 OS=Homo sapiens GN=PCIF1
PE=1 SV=1
Length = 704
Score = 605 bits (1561), Expect = e-172, Method: Compositional matrix adjust.
Identities = 318/708 (44%), Positives = 427/708 (60%), Gaps = 97/708 (13%)
Query: 58 HGNPMQQGPMTPHQGVQMGGS--------YIDHELPPELIQQGWRKFWSKRENRPYYWNR 109
HG+P ++ + H S + +LP EL+ GW K WS+RENRPYY+NR
Sbjct: 6 HGSPREEASLLSHSPGTSNQSQPCSPKPIRLVQDLPEELVHAGWEKCWSRRENRPYYFNR 65
Query: 110 ASGESLWDMPQGSGFDPIGDPLGICAGPPPPHTPNMNMPP---QPMKRRASEGMAMGAPL 166
+ +SLW+MP D I DPLG+ A P P + + PP +P KR+ SE G +
Sbjct: 66 FTNQSLWEMPVLGQHDVISDPLGLNATPLPQDSSLVETPPAENKPRKRQLSEEQPSGNGV 125
Query: 167 PK-----------KFILSGP------------------------------WDLEIPTNVI 185
K + + S P WDL+I TN +
Sbjct: 126 KKPKIEIPVTPTGQSVPSSPSIPGTPTLKMWGTSPEDKQQAALLRPTEVYWDLDIQTNAV 185
Query: 186 ILERAPTSMPQPHPEIELFRCNLTNKLRHLLQDMCHSREGIDAPHESFNRWLMERKVIDT 245
I R P+ + PHPE+EL R L KLR +++C REGI+ P ESFNRW++ERKV+D
Sbjct: 186 IKHRGPSEVLPPHPEVELLRSQLILKLRQHYRELCQQREGIEPPRESFNRWMLERKVVDK 245
Query: 246 GSDPLLPSQCYPEISPCMYREIMNDIPLKLKKPKYTGDARKQLSKYAEAAKKLIESRNAN 305
GSDPLLPS C P +SP M+REIMNDIP++L + K+ +A++ L KYAEAA++LIESR+A+
Sbjct: 246 GSDPLLPSNCEPVVSPSMFREIMNDIPIRLSRIKFREEAKRLLFKYAEAARRLIESRSAS 305
Query: 306 SESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHLTETVKDSVEKICLKIQ 365
+SRKVVKWN EDTF WLRK A+ +D+ +RL HL+ QC PH++ KDSVE IC KI
Sbjct: 306 PDSRKVVKWNVEDTFSWLRKDHSASKEDYMDRLEHLRRQCGPHVSAAAKDSVEGICSKIY 365
Query: 366 HLSTEHAKKIRDKNSDLLTANGIQEPPPPPSTLNSRKVWCYPIQFSTPSCRMPSIEYHPD 425
H+S E+ K+IR+K+ +L N I E + R V+CYP++ + + MPS+E H +
Sbjct: 366 HISLEYVKRIREKHLAILKENNISE-EVEAPEVEPRLVYCYPVRLAVSAPPMPSVEMHME 424
Query: 426 KEQIMLRFQNDTVTVNSLHFQKLEHLYRYSCFDDKKFELFLPRVWCLLKRYTTFLGQVTA 485
+ +R++ + V V+ +F KL LYRYSC DD FE FLPRVWCLL+RY G V
Sbjct: 425 NNVVCIRYKGEMVKVSRNYFSKLWLLYRYSCIDDSAFERFLPRVWCLLRRYQMMFG-VGL 483
Query: 486 QQDSGLSTWPRNSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQSGKTQASLPGPVFECL 545
+ +GL Q SLP VFE L
Sbjct: 484 YEGTGL------------------------------------------QGSLPVHVFEAL 501
Query: 546 NKHFGVTFECFASPLNCYFRQYCSMFPDTDSYFGSRGPILDLKAVSGSFQAHPPYCEELM 605
++ FGV+FECFASPLNCYFRQYCS FPDTD YFGSRGP LD +SGSF+A+PP+CEELM
Sbjct: 502 HRLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFAPLSGSFEANPPFCEELM 561
Query: 606 EATVGHFEHLLADSPEPLSFIVFVPDFRDPSPSALVKLEASHFKRKQVVVPAFEHEFRIG 665
+A V HFE LL SPEPLSFIVF+P++R+P AL ++E S FKR Q+++PAFEHE+R G
Sbjct: 562 DAMVSHFERLLESSPEPLSFIVFIPEWREPPTPALTRMEQSRFKRHQLILPAFEHEYRSG 621
Query: 666 VQPFVTNKTDLNVKSMHGTLVVWLQNSAGFAKWTPTEDKVEKLLDAFR 713
Q + K +++ K++H T V++LQN GFAKW PT +++++L A+R
Sbjct: 622 SQ-HICKKEEMHYKAVHNTAVLFLQNDPGFAKWAPTPERLQELSAAYR 668
>sp|P59114|PCIF1_MOUSE Phosphorylated CTD-interacting factor 1 OS=Mus musculus GN=Pcif1
PE=1 SV=1
Length = 706
Score = 597 bits (1538), Expect = e-169, Method: Compositional matrix adjust.
Identities = 314/707 (44%), Positives = 424/707 (59%), Gaps = 96/707 (13%)
Query: 58 HGNPMQQGPMTPHQGVQMGGS--------YIDHELPPELIQQGWRKFWSKRENRPYYWNR 109
HG+P + + H S + +LP EL+ GW K WS+RE+RPYY+NR
Sbjct: 6 HGSPREGASLLSHSPGTSSQSQPCSPKPVRLVQDLPEELVHAGWEKCWSRRESRPYYFNR 65
Query: 110 ASGESLWDMPQGSGFDPIGDPLGICAGPPPPHTPNMNMPP---QPMKRRASEGMAMGAPL 166
+ +SLW+MP D + DPLG+ A P P + + PP + KR+ SE G +
Sbjct: 66 FTNQSLWEMPVLGQHDVLSDPLGLNATPLPQDSSLVETPPVENKSRKRQLSEEQPSGNGV 125
Query: 167 PK-----------KFILSGP-----------------------------WDLEIPTNVII 186
K + + S P WDL+I TN +I
Sbjct: 126 KKPKIEIPVTPTSQSVPSSPSIPGTPTLKIWGSSTEDKQAALLRPTEVYWDLDIQTNAVI 185
Query: 187 LERAPTSMPQPHPEIELFRCNLTNKLRHLLQDMCHSREGIDAPHESFNRWLMERKVIDTG 246
R P+ + PHP++EL R L KLR +++C REGI+ P ESFNRW++ERKV+D G
Sbjct: 186 KHRGPSEVLPPHPDVELLRSQLILKLRQHYRELCQQREGIEPPRESFNRWMLERKVVDKG 245
Query: 247 SDPLLPSQCYPEISPCMYREIMNDIPLKLKKPKYTGDARKQLSKYAEAAKKLIESRNANS 306
DPLLPS C P +SP M+REIMNDIP++L + K+ +A++ L KYAEAA++LIESR+A+
Sbjct: 246 CDPLLPSNCEPVVSPSMFREIMNDIPIRLSRIKFREEAKRLLFKYAEAARRLIESRSASP 305
Query: 307 ESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHLTETVKDSVEKICLKIQH 366
+SRKVVKWN EDTF WLRK A+ +D+ +RL HL+ QC PH++ KDSVE IC KI H
Sbjct: 306 DSRKVVKWNVEDTFSWLRKEHSASKEDYMDRLEHLRRQCGPHVSAAAKDSVEGICSKIYH 365
Query: 367 LSTEHAKKIRDKNSDLLTANGIQEPPPPPSTLNSRKVWCYPIQFSTPSCRMPSIEYHPDK 426
+S E+ K+IR+K+ +L N I E S L R V+CYP++ + + MPS+E H +
Sbjct: 366 ISLEYVKRIREKHLAVLKENNIPE-EVEASELEPRLVYCYPVRLAVSAPPMPSVEMHVEN 424
Query: 427 EQIMLRFQNDTVTVNSLHFQKLEHLYRYSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQ 486
+ +R++ + V V+ +F KL LYRYSC DD FE FLPRVWCLL+RY G V
Sbjct: 425 SVVCIRYKGEMVKVSRSYFSKLWLLYRYSCVDDSAFERFLPRVWCLLRRYQMMFG-VGLY 483
Query: 487 QDSGLSTWPRNSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQSGKTQASLPGPVFECLN 546
+ +GL Q SLP VFE L+
Sbjct: 484 EGTGL------------------------------------------QGSLPVHVFETLH 501
Query: 547 KHFGVTFECFASPLNCYFRQYCSMFPDTDSYFGSRGPILDLKAVSGSFQAHPPYCEELME 606
+ FGV+FECFASPLNCYFRQYCS FPDTD YFGSRGP LD +SGSF+A+PP+CEELM+
Sbjct: 502 RLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFTPLSGSFEANPPFCEELMD 561
Query: 607 ATVGHFEHLLADSPEPLSFIVFVPDFRDPSPSALVKLEASHFKRKQVVVPAFEHEFRIGV 666
A V HFE LL S EPLSFIVF+P++R+P AL ++E S FKR Q+V+PAFEHE+R G
Sbjct: 562 AMVSHFEKLLESSAEPLSFIVFIPEWREPPTPALTRMEQSRFKRHQLVLPAFEHEYRSGS 621
Query: 667 QPFVTNKTDLNVKSMHGTLVVWLQNSAGFAKWTPTEDKVEKLLDAFR 713
Q + K +++ K++H T V++LQN GFAKW PT +++++L A++
Sbjct: 622 Q-HICKKEEMHYKAVHNTAVLFLQNGPGFAKWGPTPERLQELTAAYK 667
>sp|P27420|HSP7C_CAEEL Heat shock 70 kDa protein C OS=Caenorhabditis elegans GN=hsp-3 PE=1
SV=2
Length = 661
Score = 37.7 bits (86), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 276 KKPKYTGDARKQLSKYAEAAKKLIESRNA-----NSESRKVVKWNAEDTFLWLRKTVGAT 330
KK K +AR +L YA K IE + + + +K ++ E+ WL A+
Sbjct: 558 KKVKDKAEARNELESYAYNLKNQIEDKEKLGGKLDEDDKKTIEEAVEEAISWLGSNAEAS 617
Query: 331 YDDFQERLNHLKTQCQPHLTETVKDS 356
++ +E+ L+++ QP +++ KD+
Sbjct: 618 AEELKEQKKDLESKVQPIVSKLYKDA 643
>sp|Q6ZQ03|FNBP4_MOUSE Formin-binding protein 4 OS=Mus musculus GN=Fnbp4 PE=1 SV=2
Length = 1031
Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Query: 18 DSMSVPQGPPIPITHENIQQVMVPVPIKMQPPPNLNPMMEHGNPMQQGPMTPHQGVQMGG 77
D+++ PQ P P+ K P L+P +G+ Q P H Q
Sbjct: 157 DAITAPQ-PAAPVVASAPPPTPPRPEPKEAATPALSPTASNGSDTAQTPGW-HYDTQCSL 214
Query: 78 SYIDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQ 120
+ ++ E+ W++ W + YYWN + E W++PQ
Sbjct: 215 AGVEIEMG------DWQEVWDENTGCYYYWNTQTNEVTWELPQ 251
Score = 33.9 bits (76), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQG 121
+GW W + R +Y N SGES W+ P G
Sbjct: 607 KGWSCHWDRDHRRYFYVNEQSGESQWEFPDG 637
>sp|P0CR41|SEC24_CRYNB Protein transport protein SEC24 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=SEC24 PE=3
SV=1
Length = 920
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
Query: 86 PELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGDPLGICAGPPPPHTPNM 145
P ++ QGW W + N Y ++++G S W++P F P +P
Sbjct: 4 PIMLPQGWEARWDPQANAYIYVDQSTGRSQWEVPLNPTF---------------PTSPTP 48
Query: 146 NMPPQPMKRRA 156
+ PPQ RRA
Sbjct: 49 HAPPQRHGRRA 59
>sp|P0CR40|SEC24_CRYNJ Protein transport protein SEC24 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SEC24 PE=3 SV=1
Length = 920
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
Query: 86 PELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGDPLGICAGPPPPHTPNM 145
P ++ QGW W + N Y ++++G S W++P F P +P
Sbjct: 4 PIMLPQGWEARWDPQANAYIYVDQSTGRSQWEVPLNPTF---------------PTSPTP 48
Query: 146 NMPPQPMKRRA 156
+ PPQ RRA
Sbjct: 49 HAPPQRHGRRA 59
>sp|P19208|HSP7C_CAEBR Heat shock 70 kDa protein C OS=Caenorhabditis briggsae GN=hsp-3
PE=3 SV=2
Length = 661
Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 276 KKPKYTGDARKQLSKYAEAAKKLIESRNA-----NSESRKVVKWNAEDTFLWLRKTVGAT 330
KK K +AR +L YA + K I + + + +K ++ ++ WL A+
Sbjct: 558 KKVKEKAEARNELESYAYSLKNQIGDKEKLGGKLDEDDKKTIEEAVDEAISWLGSNADAS 617
Query: 331 YDDFQERLNHLKTQCQPHLTETVKDS 356
++ +E+ L+ + QP +++ KD
Sbjct: 618 AEELKEQKKELEGKVQPIVSKLYKDG 643
>sp|P41827|HSP74_ANOAL Heat shock protein 70 B2 OS=Anopheles albimanus GN=HSP70B2 PE=3
SV=1
Length = 640
Score = 34.7 bits (78), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 284 ARKQLSKYAEAAKKLIESRNANSES---RKVVKWNAEDTFLWLRKTVGATYDDFQERLNH 340
AR QL Y K+ ++ A+ S RK V+ E+T W+ A ++F+ ++
Sbjct: 537 ARNQLEAYCFNLKQSLDGEGASKLSDADRKTVQDRCEETLRWIDGNTMADKEEFEHKMQE 596
Query: 341 LKTQCQPHLTE 351
L C P +T+
Sbjct: 597 LTKACSPIMTK 607
>sp|Q8N3X1|FNBP4_HUMAN Formin-binding protein 4 OS=Homo sapiens GN=FNBP4 PE=1 SV=3
Length = 1017
Score = 33.9 bits (76), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQG 121
+GW W + R +Y N SGES W+ P G
Sbjct: 599 KGWSCHWDRDHRRYFYVNEQSGESQWEFPDG 629
>sp|Q03683|BIP3_TOBAC Luminal-binding protein 3 (Fragment) OS=Nicotiana tabacum GN=BIP3
PE=2 SV=1
Length = 168
Score = 33.9 bits (76), Expect = 4.8, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 276 KKPKYTGDARKQLSKYAEAAKKLIESRNA-----NSESRKVVKWNAEDTFLWLRKTVGAT 330
KK K DAR L Y K I ++ S+ ++ ++ ++ WL A
Sbjct: 65 KKVKERIDARNGLETYVYNMKNQINDKDKLADKLESDEKEKIETAVKEALEWLDDNQSAE 124
Query: 331 YDDFQERLNHLKTQCQPHLT 350
+D++E+L ++ C P +T
Sbjct: 125 KEDYEEKLKEVEAVCNPIIT 144
>sp|P27541|HSP70_BRUMA Heat shock 70 kDa protein OS=Brugia malayi GN=HSP70 PE=3 SV=1
Length = 644
Score = 33.1 bits (74), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 284 ARKQLSKYAEAAKKLIESRN----ANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLN 339
A+ L YA K+ IE + E +K ++ ++T WL A D+F+ R
Sbjct: 537 AKNALESYAFNMKQTIEDEKLKDKISEEDKKKIQEKCDETVRWLDGNQTAEKDEFEHRQK 596
Query: 340 HLKTQCQPHLTE 351
L++ C P +T+
Sbjct: 597 ELESVCNPIITK 608
>sp|Q03682|BIP2_TOBAC Luminal-binding protein 2 (Fragment) OS=Nicotiana tabacum GN=BIP2
PE=2 SV=1
Length = 292
Score = 33.1 bits (74), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 276 KKPKYTGDARKQLSKYAEAAKKLIESRNA-----NSESRKVVKWNAEDTFLWLRKTVGAT 330
KK K DAR L Y K I ++ S+ ++ ++ ++ WL A
Sbjct: 186 KKVKERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAE 245
Query: 331 YDDFQERLNHLKTQCQPHLT 350
+D++E+L ++ C P +T
Sbjct: 246 KEDYEEKLKEVEAVCNPIIT 265
>sp|Q90593|GRP78_CHICK 78 kDa glucose-regulated protein OS=Gallus gallus GN=HSPA5 PE=1
SV=1
Length = 652
Score = 33.1 bits (74), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 276 KKPKYTGDARKQLSKYAEAAKKLIESRNA-----NSESRKVVKWNAEDTFLWLRKTVGAT 330
KK K DAR +L YA + K I + +SE ++ ++ E+ WL A
Sbjct: 551 KKLKERIDARNELESYAYSLKNQIGDKEKLGGKLSSEDKETIEKAVEEKIEWLESHQDAD 610
Query: 331 YDDFQERLNHLKTQCQPHLT 350
+DF+ + L+ QP ++
Sbjct: 611 IEDFKSKKKELEEVVQPIVS 630
>sp|Q03681|BIP1_TOBAC Luminal-binding protein 1 (Fragment) OS=Nicotiana tabacum GN=BIP1
PE=2 SV=1
Length = 290
Score = 33.1 bits (74), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 276 KKPKYTGDARKQLSKYAEAAKKLIESRNA-----NSESRKVVKWNAEDTFLWLRKTVGAT 330
KK K DAR L Y K I ++ S+ ++ ++ ++ WL A
Sbjct: 186 KKVKERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAE 245
Query: 331 YDDFQERLNHLKTQCQPHLT 350
+D++E+L ++ C P +T
Sbjct: 246 KEDYEEKLKEVEAICNPIIT 265
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 314,531,763
Number of Sequences: 539616
Number of extensions: 14839244
Number of successful extensions: 40993
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 40677
Number of HSP's gapped (non-prelim): 433
length of query: 744
length of database: 191,569,459
effective HSP length: 125
effective length of query: 619
effective length of database: 124,117,459
effective search space: 76828707121
effective search space used: 76828707121
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)