Query psy2928
Match_columns 744
No_of_seqs 96 out of 106
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 21:12:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jx8_A Hpcif1, phosphorylated 99.3 3.9E-13 1.3E-17 107.8 1.4 50 81-130 3-52 (52)
2 1e0n_A Hypothetical protein; Y 97.8 2.3E-06 7.9E-11 60.6 -0.7 26 92-119 2-27 (27)
3 2jv4_A Peptidyl-prolyl CIS/tra 97.4 1.6E-05 5.4E-10 64.2 -1.0 32 91-122 10-41 (54)
4 1ywi_A Formin-binding protein 97.3 1.3E-05 4.4E-10 61.3 -2.0 30 90-120 11-40 (41)
5 2ysh_A GAS-7, growth-arrest-sp 97.0 0.00015 5E-09 54.4 0.7 30 91-121 10-39 (40)
6 1e0l_A Formin binding protein; 97.0 7.2E-05 2.4E-09 55.9 -1.0 29 91-120 6-34 (37)
7 2ysi_A Transcription elongatio 96.9 0.0001 3.5E-09 56.1 -0.8 28 92-120 11-38 (40)
8 1e0m_A Wwprototype; SH3 protot 96.8 0.00014 4.8E-09 53.4 -0.8 30 91-121 6-35 (37)
9 1wr7_A NEDD4-2; all-beta, liga 96.7 0.00023 7.9E-09 54.0 -0.3 36 81-122 6-41 (41)
10 1ymz_A CC45; artificial protei 96.6 0.00023 7.7E-09 54.3 -0.8 29 92-121 12-40 (43)
11 2dk1_A WW domain-binding prote 96.5 0.00034 1.2E-08 55.9 -0.3 29 91-120 7-35 (50)
12 1wr3_A Ubiquitin-protein ligas 96.4 0.00039 1.3E-08 51.0 -0.6 30 91-121 7-36 (36)
13 2kyk_A E3 ubiquitin-protein li 96.3 0.00074 2.5E-08 50.5 0.2 35 81-121 4-38 (39)
14 2dmv_A Itchy homolog E3 ubiqui 95.9 0.0015 5.1E-08 50.0 0.5 31 91-122 10-40 (43)
15 1wr4_A Ubiquitin-protein ligas 95.8 0.0011 3.7E-08 48.3 -0.9 30 91-121 7-36 (36)
16 2l5f_A PRE-mRNA-processing fac 95.7 0.00093 3.2E-08 58.4 -1.7 31 89-120 53-83 (92)
17 2ysf_A E3 ubiquitin-protein li 95.5 0.0027 9.1E-08 48.0 0.4 36 81-122 5-40 (40)
18 2ysg_A Syntaxin-binding protei 95.5 0.003 1E-07 47.7 0.7 35 81-121 5-39 (40)
19 2jxw_A WW domain-binding prote 95.5 0.0012 4.2E-08 55.5 -1.8 29 91-120 46-74 (75)
20 1o6w_A PRP40, PRE-mRNA process 95.3 0.0032 1.1E-07 52.5 0.3 34 88-122 40-73 (75)
21 2djy_A SMAD ubiquitination reg 95.0 0.0049 1.7E-07 47.2 0.4 37 80-122 4-40 (42)
22 2l4j_A YES-associated protein 94.9 0.007 2.4E-07 47.2 1.1 36 81-122 9-44 (46)
23 2kpz_A E3 ubiquitin-protein li 94.9 0.004 1.4E-07 49.0 -0.3 36 81-122 10-45 (49)
24 2law_A Yorkie homolog; YAP, SM 94.8 0.0028 9.5E-08 47.4 -1.3 30 91-121 9-38 (38)
25 1i5h_W Rnedd4, ubiquitin ligas 94.4 0.0075 2.6E-07 47.8 0.2 36 81-122 9-44 (50)
26 2l5f_A PRE-mRNA-processing fac 94.4 0.0035 1.2E-07 54.7 -1.9 31 90-121 13-43 (92)
27 3lof_A Heat shock 70 kDa prote 94.4 0.043 1.5E-06 48.6 5.0 68 281-348 7-78 (113)
28 2ez5_W Dnedd4, E3 ubiquitin-pr 93.7 0.014 4.7E-07 45.5 0.3 36 81-122 8-43 (46)
29 2ysc_A Amyloid beta A4 precurs 93.2 0.014 4.9E-07 44.3 -0.2 33 81-120 6-38 (39)
30 2jxw_A WW domain-binding prote 92.9 0.0095 3.2E-07 50.1 -1.7 30 91-121 5-34 (75)
31 2dk7_A Transcription elongatio 92.4 0.038 1.3E-06 47.6 1.2 27 93-120 22-48 (73)
32 2zaj_A Membrane-associated gua 92.2 0.015 5.2E-07 46.1 -1.3 37 80-122 10-46 (49)
33 2p32_A Heat shock 70 kDa prote 92.1 0.2 6.8E-06 45.0 5.6 70 279-348 14-87 (120)
34 2kxq_A E3 ubiquitin-protein li 91.8 0.027 9.1E-07 48.9 -0.4 31 91-122 58-88 (90)
35 2ysd_A Membrane-associated gua 91.6 0.034 1.2E-06 45.3 0.1 37 81-123 12-48 (57)
36 2ho2_A Fe65 protein, amyloid b 91.5 0.023 7.8E-07 43.0 -1.0 29 91-121 6-34 (38)
37 1tk7_A CG4244-PB; WW domain, n 91.3 0.022 7.7E-07 49.2 -1.4 30 91-121 59-88 (88)
38 2dwv_A Salvador homolog 1 prot 90.9 0.024 8.4E-07 44.8 -1.4 36 81-122 11-46 (49)
39 2ysb_A Salvador homolog 1 prot 90.5 0.038 1.3E-06 43.7 -0.7 31 91-122 14-44 (49)
40 1o6w_A PRP40, PRE-mRNA process 90.3 0.033 1.1E-06 46.3 -1.2 29 92-121 3-31 (75)
41 2jmf_A E3 ubiquitin-protein li 89.7 0.053 1.8E-06 43.6 -0.5 36 81-122 16-51 (53)
42 1tk7_A CG4244-PB; WW domain, n 89.2 0.07 2.4E-06 46.1 -0.1 31 91-122 15-45 (88)
43 3tc5_A Peptidyl-prolyl CIS-tra 89.2 0.056 1.9E-06 51.7 -0.8 32 92-123 13-44 (166)
44 2yse_A Membrane-associated gua 88.8 0.068 2.3E-06 44.2 -0.4 39 78-122 8-46 (60)
45 1wmv_A WWOX, WW domain contain 88.8 0.067 2.3E-06 43.1 -0.5 36 81-122 9-44 (54)
46 1ud0_A HSC70, 70 kDa heat-shoc 87.8 0.18 6E-06 44.3 1.6 66 281-346 2-71 (113)
47 1yw5_A Peptidyl prolyl CIS/tra 87.4 0.088 3E-06 50.3 -0.7 30 91-120 10-39 (177)
48 2qar_B Telsam domain; polymer, 83.7 0.98 3.3E-05 39.9 4.2 46 310-355 11-88 (93)
49 2kxq_A E3 ubiquitin-protein li 83.2 0.14 4.9E-06 44.3 -1.3 31 91-122 12-42 (90)
50 4e81_A Chaperone protein DNAK; 79.9 1.7 5.7E-05 43.1 4.8 66 281-349 144-211 (219)
51 1jmq_A YAP65, 65 kDa YES-assoc 79.1 0.39 1.3E-05 36.8 0.0 31 91-122 11-41 (46)
52 3d2f_A Heat shock protein homo 78.2 2.2 7.6E-05 48.4 5.7 70 281-350 549-622 (675)
53 1u00_A HSC66, chaperone protei 73.4 3.9 0.00013 40.3 5.4 66 281-349 141-208 (227)
54 2e45_A Fe65 protein, amyloid b 69.5 0.61 2.1E-05 38.4 -1.2 34 81-121 17-50 (55)
55 4b9q_A Chaperone protein DNAK; 58.8 8.7 0.0003 42.8 5.1 67 281-350 532-600 (605)
56 2kho_A Heat shock protein 70; 56.3 8.9 0.0003 42.7 4.6 66 281-349 532-599 (605)
57 1ji7_A ETS-related protein TEL 41.3 23 0.00077 31.0 3.8 17 310-326 11-27 (89)
58 4gfq_A Ribosome-recycling fact 39.5 83 0.0029 31.6 8.0 78 273-383 122-207 (209)
59 2wps_A Trimeric autotransporte 36.8 27 0.00091 32.0 3.6 26 348-373 69-94 (107)
60 2jv3_A ETS1 proto-oncogene; ET 36.2 21 0.0007 32.5 2.8 14 313-326 43-56 (110)
61 2v6x_B DOA4-independent degrad 33.0 17 0.00059 29.5 1.6 15 330-344 39-53 (54)
62 3a2a_A Voltage-gated hydrogen 32.1 71 0.0024 26.5 5.0 38 352-389 15-54 (58)
63 1pk1_B Sex COMB on midleg CG94 31.8 25 0.00084 30.6 2.5 20 308-327 11-30 (89)
64 1wqg_A Ribosome recycling fact 31.3 2E+02 0.0067 28.3 9.0 18 273-290 98-115 (185)
65 2e8o_A SAM domain and HD domai 30.2 24 0.0008 31.0 2.2 20 308-327 24-43 (103)
66 3mq9_A Bone marrow stromal ant 29.7 1E+02 0.0035 32.6 7.3 69 283-363 370-440 (471)
67 1eh1_A Ribosome recycling fact 29.7 1.7E+02 0.0057 28.8 8.3 18 273-290 99-116 (185)
68 1ise_A Ribosome recycling fact 29.1 2.2E+02 0.0077 27.9 9.0 18 273-290 98-115 (185)
69 1is1_A Ribosome recycling fact 28.2 2.1E+02 0.0073 28.0 8.7 18 273-290 98-115 (185)
70 1dd5_A Ribosome recycling fact 27.9 2.2E+02 0.0074 28.0 8.7 18 273-290 98-115 (185)
71 1ge9_A Ribosome recycling fact 25.2 2E+02 0.007 28.2 8.0 29 262-290 80-117 (184)
72 1sv0_A ETS DNA-binding protein 25.2 56 0.0019 28.4 3.6 9 338-346 69-77 (85)
73 3bs7_A Protein aveugle; sterIl 23.9 45 0.0015 27.3 2.7 27 309-337 1-28 (78)
74 3vmx_A Voltage-gated hydrogen 23.4 1.4E+02 0.0048 24.1 5.2 37 352-388 8-46 (48)
75 2qb0_B Telsam domain - lysozym 23.2 80 0.0027 31.6 4.8 14 313-326 14-27 (241)
76 3l4h_A E3 ubiquitin-protein li 22.8 14 0.00047 34.0 -0.8 31 91-122 75-105 (109)
77 2xzr_A Immunoglobulin-binding 22.5 90 0.0031 28.5 4.5 42 332-373 58-101 (114)
78 2a01_A Apolipoprotein A-I; fou 21.7 73 0.0025 31.8 4.2 93 281-377 68-176 (243)
79 1kw4_A Polyhomeotic; SAM domai 21.7 57 0.0019 28.2 3.0 27 309-337 12-38 (89)
80 3ghg_A Fibrinogen alpha chain; 20.4 1.3E+02 0.0044 34.3 6.1 45 333-377 114-160 (562)
81 2gle_A Neurabin-1; SAM domain, 20.3 59 0.002 26.3 2.6 26 309-337 2-27 (74)
82 2ar0_A M.ecoki, type I restric 20.3 82 0.0028 34.8 4.5 21 695-715 390-410 (541)
83 3twe_A Alpha4H; unknown functi 20.2 57 0.002 23.1 2.1 14 331-344 10-23 (27)
No 1
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=99.30 E-value=3.9e-13 Score=107.76 Aligned_cols=50 Identities=54% Similarity=1.077 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHhHHHHhhcccCCCcceeccCCcccccCCCCCCCCCCCCC
Q psy2928 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGDP 130 (744)
Q Consensus 81 ~~~l~~el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~~~~d~i~dp 130 (744)
.++|+++.|-.||++.||+..+|+||||..||+|.||.|...+|||+|||
T Consensus 3 ~~~~~~~~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~~~dpl~~~ 52 (52)
T 2jx8_A 3 LGSLPEELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLGQHDVISDP 52 (52)
T ss_dssp ---CCHHHHHHTCCEEEETTTTEEEEEETTTTEEESSCCCCTTSCCCCCC
T ss_pred cccCCcCCCCcCcEEEEccccCCEEEEECCCCCEEeCCCCCCCCCCCCCC
Confidence 68999999999999999999999999999999999999999999999998
No 2
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=97.78 E-value=2.3e-06 Score=60.57 Aligned_cols=26 Identities=31% Similarity=0.667 Sum_probs=24.9
Q ss_pred hHHHHhhcccCCCcceeccCCcccccCC
Q psy2928 92 GWRKFWSKRENRPYYWNRASGESLWDMP 119 (744)
Q Consensus 92 gw~k~wskre~rpy~~nk~t~~slwe~p 119 (744)
||+ +++-.+|+||||..||||.||.|
T Consensus 2 gWe--~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 2 GWE--IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CEE--EEESSSSEEEEETTTTEEESSCC
T ss_pred CCe--EECCCCCeEEEECCCCCEeccCC
Confidence 898 89999999999999999999987
No 3
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=97.40 E-value=1.6e-05 Score=64.24 Aligned_cols=32 Identities=41% Similarity=0.839 Sum_probs=29.4
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
.||.+.+++..+|+||||..||+|-||.|...
T Consensus 10 ~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~ 41 (54)
T 2jv4_A 10 AGWEVRHSNSKNLPYYFNPATRESRWEPPADT 41 (54)
T ss_dssp SSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred CCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence 48999999999999999999999999999643
No 4
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=97.34 E-value=1.3e-05 Score=61.29 Aligned_cols=30 Identities=30% Similarity=0.773 Sum_probs=26.4
Q ss_pred HHhHHHHhhcccCCCcceeccCCcccccCCC
Q psy2928 90 QQGWRKFWSKRENRPYYWNRASGESLWDMPQ 120 (744)
Q Consensus 90 q~gw~k~wskre~rpy~~nk~t~~slwe~p~ 120 (744)
..||.++.++ ++|+||||..|+||.||.|.
T Consensus 11 ~~~W~e~~~~-~G~~YYyN~~T~eS~We~P~ 40 (41)
T 1ywi_A 11 KSMWTEHKSP-DGRTYYYNTETKQSTWEKPD 40 (41)
T ss_dssp -CCEEEEEET-TTEEEEEETTTTEEEESCC-
T ss_pred CCCcEEEECC-CCCEEEEECCCCCEEeCCCC
Confidence 4589999987 89999999999999999994
No 5
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=96.99 E-value=0.00015 Score=54.43 Aligned_cols=30 Identities=33% Similarity=0.893 Sum_probs=27.3
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQG 121 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~~ 121 (744)
.||+..++. .+|+||||..|+++-||.|..
T Consensus 10 ~gW~~~~d~-~Gr~YY~n~~T~~t~We~P~~ 39 (40)
T 2ysh_A 10 PGWQSYLSP-QGRRYYVNTTTNETTWERPSS 39 (40)
T ss_dssp TTCEEEECT-TSCEEEECSSSCCEESSSCCC
T ss_pred CCceEEECC-CCCEEEEECCCCCEeCCCCCC
Confidence 489999995 899999999999999999964
No 6
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=96.99 E-value=7.2e-05 Score=55.88 Aligned_cols=29 Identities=31% Similarity=0.814 Sum_probs=26.2
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQ 120 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~ 120 (744)
.+|.++.++- +|+||||..|+||-||.|.
T Consensus 6 ~~W~e~~~~~-G~~YYyN~~T~es~We~P~ 34 (37)
T 1e0l_A 6 SEWTEYKTAD-GKTYYYNNRTLESTWEKPQ 34 (37)
T ss_dssp CSCEEEECTT-SCEEEEETTTTEEESSCCS
T ss_pred CCeEEEECCC-CCEEEEECCCCCEEecCCC
Confidence 4799998875 9999999999999999995
No 7
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=96.91 E-value=0.0001 Score=56.12 Aligned_cols=28 Identities=29% Similarity=0.646 Sum_probs=25.6
Q ss_pred hHHHHhhcccCCCcceeccCCcccccCCC
Q psy2928 92 GWRKFWSKRENRPYYWNRASGESLWDMPQ 120 (744)
Q Consensus 92 gw~k~wskre~rpy~~nk~t~~slwe~p~ 120 (744)
+|.++. ..++|+||||..|+||-||.|.
T Consensus 11 ~W~e~~-~~~G~~YYyN~~T~eS~We~P~ 38 (40)
T 2ysi_A 11 IWVENK-TPDGKVYYYNARTRESAWTKPD 38 (40)
T ss_dssp SEEEEE-CTTSCEEEEETTTCCEESSCCS
T ss_pred CCEEEE-CCCCCEEEEECCCCCEEeCCCC
Confidence 799988 4689999999999999999995
No 8
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=96.80 E-value=0.00014 Score=53.41 Aligned_cols=30 Identities=27% Similarity=0.790 Sum_probs=27.5
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQG 121 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~~ 121 (744)
.||+++.+ .++|+||+|..|+++-||-|.+
T Consensus 6 ~gW~~~~~-~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 6 PGWDEYKT-HNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp TTEEEEEC-SSCCEEEEETTTTEEESSCTTT
T ss_pred CCcEEEEC-CCCCEEEEECCCCCeeeeCcCC
Confidence 49999998 5899999999999999999975
No 9
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=96.69 E-value=0.00023 Score=53.99 Aligned_cols=36 Identities=25% Similarity=0.692 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 81 ~~~l~~el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
...||+ ||++.++ ..+|+||+|..|+++-||-|.++
T Consensus 6 ~~~LP~-----gWe~~~~-~~G~~Yy~n~~t~~t~We~Pr~~ 41 (41)
T 1wr7_A 6 QSFLPP-----GWEMRIA-PNGRPFFIDHNTKTTTWEDPRLK 41 (41)
T ss_dssp CCSSCT-----TEEEEEC-TTSCEEEEETTTTEEESSCGGGC
T ss_pred cCCCCC-----CcEEEEc-CCCCEEEEECCCCCeecCCCCCC
Confidence 345774 9999999 58999999999999999999764
No 10
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=96.63 E-value=0.00023 Score=54.27 Aligned_cols=29 Identities=28% Similarity=0.653 Sum_probs=26.9
Q ss_pred hHHHHhhcccCCCcceeccCCcccccCCCC
Q psy2928 92 GWRKFWSKRENRPYYWNRASGESLWDMPQG 121 (744)
Q Consensus 92 gw~k~wskre~rpy~~nk~t~~slwe~p~~ 121 (744)
||.+.++. .+|+||+|..|++|-||-|..
T Consensus 12 gW~~~~~~-~Gr~YY~n~~T~~t~We~P~~ 40 (43)
T 1ymz_A 12 GWERRTDV-EGKVYYFNVRTLTTTWERPTI 40 (43)
T ss_dssp SEEEEECT-TSCEEEEETTTTEEESSCCCS
T ss_pred CCEEEECC-CCCEEEEECCCCCCcccCCcc
Confidence 99999995 899999999999999999864
No 11
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=96.55 E-value=0.00034 Score=55.93 Aligned_cols=29 Identities=31% Similarity=0.692 Sum_probs=26.2
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQ 120 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~ 120 (744)
..|.+..++ ++|+||||..||||-||.|.
T Consensus 7 ~~W~e~~s~-~G~~YYyN~~T~eS~WekP~ 35 (50)
T 2dk1_A 7 GRWVEGITS-EGYHYYYDLISGASQWEKPE 35 (50)
T ss_dssp CCEEECCCS-TTCCCEEESSSCCEESSCCT
T ss_pred CCeEEEECC-CCCEEEEECCCCCEEeeCCh
Confidence 358888888 69999999999999999995
No 12
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=96.41 E-value=0.00039 Score=51.03 Aligned_cols=30 Identities=27% Similarity=0.588 Sum_probs=27.5
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQG 121 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~~ 121 (744)
.||++.++ ..+|+||+|..|+++-||-|.|
T Consensus 7 ~GWe~~~d-~~G~~Yy~n~~t~~t~We~P~l 36 (36)
T 1wr3_A 7 PGWEEKVD-NLGRTYYVNHNNRSTQWHRPSL 36 (36)
T ss_dssp TTEEEEEC-SSSCEEEEETTTCCEESSCSCC
T ss_pred CCCEEEEC-CCCCEEEEECCCCCEeeeCcCC
Confidence 49999998 5999999999999999999975
No 13
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=96.27 E-value=0.00074 Score=50.54 Aligned_cols=35 Identities=29% Similarity=0.619 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHhHHHHhhcccCCCcceeccCCcccccCCCC
Q psy2928 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQG 121 (744)
Q Consensus 81 ~~~l~~el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~ 121 (744)
...||+ ||++.++. .+|+||+|..|+++-||-|.+
T Consensus 4 ~~~LP~-----gWe~~~d~-~G~~YY~n~~t~~t~We~P~~ 38 (39)
T 2kyk_A 4 MGPLPP-----GWERRVDN-MGRIYYVDHFTRTTTWQRPTL 38 (39)
T ss_dssp SCCCCS-----SCEEEECT-TSCEEEECSSSCCEECCCCCC
T ss_pred cCCCCC-----CcEEEEcC-CCCEEEEECCCCCEeccCCCC
Confidence 345664 89999994 999999999999999999975
No 14
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.94 E-value=0.0015 Score=49.98 Aligned_cols=31 Identities=29% Similarity=0.753 Sum_probs=27.9
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
.||++.++. .+|+||+|..|+++-||-|...
T Consensus 10 ~GWe~~~d~-~Gr~YY~n~~t~~T~We~P~~~ 40 (43)
T 2dmv_A 10 PGWEQRVDQ-HGRVYYVDHVEKRTTWDRPSGP 40 (43)
T ss_dssp TTEEEEECT-TSCEEEEETTTCCEESSCSSSC
T ss_pred CCceEEECC-CCCEEEEECCCCCEecCCcCCC
Confidence 489999995 8999999999999999999753
No 15
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=95.78 E-value=0.0011 Score=48.29 Aligned_cols=30 Identities=27% Similarity=0.603 Sum_probs=27.2
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQG 121 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~~ 121 (744)
.||++.++. .+|+||+|..|+++-||-|.+
T Consensus 7 ~gWe~~~d~-~g~~Yy~n~~t~~t~W~~P~~ 36 (36)
T 1wr4_A 7 SGWEERKDA-KGRTYYVNHNNRTTTWTRPIM 36 (36)
T ss_dssp TTEEEEECS-SSCEEEEETTTTEEESSCCCC
T ss_pred CCCEEEECC-CCCEEEEECCCCCEeCcCCCC
Confidence 499999985 899999999999999999864
No 16
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=95.73 E-value=0.00093 Score=58.38 Aligned_cols=31 Identities=29% Similarity=0.755 Sum_probs=28.3
Q ss_pred HHHhHHHHhhcccCCCcceeccCCcccccCCC
Q psy2928 89 IQQGWRKFWSKRENRPYYWNRASGESLWDMPQ 120 (744)
Q Consensus 89 ~q~gw~k~wskre~rpy~~nk~t~~slwe~p~ 120 (744)
+..||..++++ .+|.||+|..||+|-||.|.
T Consensus 53 ~~~~W~~~~~~-~Gr~Yy~N~~T~~s~We~P~ 83 (92)
T 2l5f_A 53 SKCPWKEYKSD-SGKTYYYNSQTKESRWAKPK 83 (92)
T ss_dssp HSCSEEEEECT-TCCEEEEETTTTEEESCCCH
T ss_pred cccceEEEECC-CCCEEEEECCCCCeeccCch
Confidence 45799999987 89999999999999999984
No 17
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=95.53 E-value=0.0027 Score=48.04 Aligned_cols=36 Identities=19% Similarity=0.519 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 81 ~~~l~~el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
..+||+ ||++..+ ..+|+||+|..|+++-||=|.++
T Consensus 5 ~~~LP~-----gWe~~~~-~~G~~Yy~nh~t~~ttw~~Pr~~ 40 (40)
T 2ysf_A 5 SSGLPE-----GWEMRFT-VDGIPYFVDHNRRTTTYIDPRTG 40 (40)
T ss_dssp CCCCCS-----SEEEEEC-TTCCEEEEETTTCCEESSCTTTC
T ss_pred cCCCCc-----CcEEEEc-CCCCEEEEECCCCcEecCCCCCC
Confidence 345775 9999988 78999999999999999999874
No 18
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=95.52 E-value=0.003 Score=47.66 Aligned_cols=35 Identities=23% Similarity=0.588 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHhHHHHhhcccCCCcceeccCCcccccCCCC
Q psy2928 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQG 121 (744)
Q Consensus 81 ~~~l~~el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~ 121 (744)
..+|| .||++..+ ..+|+||+|..|+++-||-|.+
T Consensus 5 ~~~LP-----~gWe~~~~-~~Gr~Yy~nh~t~~ttW~~P~~ 39 (40)
T 2ysg_A 5 SSGLP-----YGWEEAYT-ADGIKYFINHVTQTTSWIHPVM 39 (40)
T ss_dssp SSCCC-----TTEEEEEC-SSSCEEEEESSSCCEECCCCCC
T ss_pred cCCCC-----CCcEEEEc-CCCCEEEEECCCCcCcCCCCCC
Confidence 34566 48999888 7899999999999999999976
No 19
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=95.46 E-value=0.0012 Score=55.47 Aligned_cols=29 Identities=34% Similarity=0.766 Sum_probs=27.1
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQ 120 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~ 120 (744)
.||..+.++ ++|.||+|..||||-||.|.
T Consensus 46 ~~W~~~~~~-~Gr~YyyN~~T~~s~We~P~ 74 (75)
T 2jxw_A 46 TVWVEGLSE-DGFTYYYNTETGESRWEKPD 74 (75)
T ss_dssp CSEEEEEET-TTEEEEEETTTTEEESSCCC
T ss_pred ccEEEEECC-CCCEEEEECcCCCEeccCcC
Confidence 689999998 89999999999999999984
No 20
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=95.34 E-value=0.0032 Score=52.49 Aligned_cols=34 Identities=26% Similarity=0.708 Sum_probs=30.5
Q ss_pred HHHHhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 88 LIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 88 l~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
++..||.+..+. ++|.||+|..|++|-||.|.+.
T Consensus 40 ~lp~gW~~~~~~-~Gr~Yy~n~~t~~t~W~~P~~~ 73 (75)
T 1o6w_A 40 LRENGWKAAKTA-DGKVYYYNPTTRETSWTIPAFE 73 (75)
T ss_dssp HHHHTCEEEECT-TCCEEEEETTTTEEESSCCCCC
T ss_pred CCCCeEEEEECC-CCCEEEEECCCCCEECCCCCCC
Confidence 467899999885 6999999999999999999875
No 21
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=94.98 E-value=0.0049 Score=47.25 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=31.9
Q ss_pred CCCCCCHHHHHHhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 80 IDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 80 ~~~~l~~el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
-...||+ ||++..+ ..+|+||.|..|+++-||=|.+.
T Consensus 4 ~~~~LP~-----GWe~~~~-~~G~~Yy~nh~t~~ttW~~Pr~~ 40 (42)
T 2djy_A 4 GSGPLPP-----GWEIRNT-ATGRVYFVDHNNRTTQFTDPRLS 40 (42)
T ss_dssp CCSCCCS-----SEEEEEC-SSSCEEEEETTTTEEESSCTTTS
T ss_pred CcCCCCc-----CcEEEEC-CCCCEEEEECCCCCEeCCCCCCC
Confidence 3456775 9999888 78999999999999999999875
No 22
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=94.91 E-value=0.007 Score=47.23 Aligned_cols=36 Identities=28% Similarity=0.553 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 81 ~~~l~~el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
...||+ ||++..+ ..+|+||+|..|+++-||-|.+.
T Consensus 9 ~~~LP~-----gWe~~~~-~~G~~Yyinh~t~~TtWe~Pr~~ 44 (46)
T 2l4j_A 9 SGPLPE-----GWEQAIT-PEGEIYYINHKNKTTSWLDPRLE 44 (46)
T ss_dssp TSCCCT-----TCEEEEC-TTSCEEEEETTTTEEECSCCSSC
T ss_pred CCCCCc-----CceeEEC-CCCCEEEEECCCCCEeCCCCCcC
Confidence 345775 9999988 78999999999999999999864
No 23
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=94.89 E-value=0.004 Score=48.97 Aligned_cols=36 Identities=22% Similarity=0.612 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 81 ~~~l~~el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
...||+ ||+..++ ..+|+||+|..|+++-||-|.+.
T Consensus 10 ~~~LP~-----gWe~~~~-~~G~~Yy~nh~T~~ttWe~Pr~~ 45 (49)
T 2kpz_A 10 QGFLPK-----GWEVRHA-PNGRPFFIDHNTKTTTWEDPRLK 45 (49)
T ss_dssp --CCCT-----TEEEEEC-TTSCEEEEETTTTEEESSCTTCC
T ss_pred CCCCCC-----CcEEEEC-CCCCEEEEECCCCCEecCCCCCC
Confidence 345774 9999998 68999999999999999999875
No 24
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=94.82 E-value=0.0028 Score=47.38 Aligned_cols=30 Identities=23% Similarity=0.590 Sum_probs=27.3
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQG 121 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~~ 121 (744)
.||++..+ ..+|+||+|..|+++-||-|.|
T Consensus 9 ~gWe~~~~-~~G~~Yy~nh~t~~ttW~~Prl 38 (38)
T 2law_A 9 DGWEQAMT-QDGEIYYINHKNKTTSWLDPRL 38 (38)
T ss_dssp SSCCEEEE-TTTEEEEEETTTTEEESSCTTC
T ss_pred CCcEEEEC-CCCCEEEEECCCCCEeCCCCCC
Confidence 49999988 6899999999999999999875
No 25
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=94.45 E-value=0.0075 Score=47.79 Aligned_cols=36 Identities=25% Similarity=0.602 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 81 ~~~l~~el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
...||+ ||++..+ ..+|+||+|..|+++-||-|.+.
T Consensus 9 ~~~LP~-----gWe~~~~-~~Gr~Yy~nh~t~~T~We~Pr~~ 44 (50)
T 1i5h_W 9 LGPLPP-----GWEERTH-TDGRVFFINHNIKKTQWEDPRMQ 44 (50)
T ss_dssp CSSCST-----TEEEEEC-TTSCEEEEETTTTEEESSCTTTS
T ss_pred CCCCCc-----CcEEEEc-CCCCEEEEECCCCCEEeeCCCCC
Confidence 345775 8999988 78999999999999999999765
No 26
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=94.38 E-value=0.0035 Score=54.70 Aligned_cols=31 Identities=29% Similarity=0.750 Sum_probs=27.5
Q ss_pred HHhHHHHhhcccCCCcceeccCCcccccCCCC
Q psy2928 90 QQGWRKFWSKRENRPYYWNRASGESLWDMPQG 121 (744)
Q Consensus 90 q~gw~k~wskre~rpy~~nk~t~~slwe~p~~ 121 (744)
..||.+.-+. .+|+||+|..||+|-||.|..
T Consensus 13 p~~W~e~~~~-~Gr~YYyN~~T~~s~We~P~~ 43 (92)
T 2l5f_A 13 KSMWTEHKSP-DGRTYYYNTETKQSTWEKPDD 43 (92)
T ss_dssp TTTEEEEECT-TSCEEEEETTTTEEESSCSGG
T ss_pred CCCcEEEEcC-CCCEEEEECCCCceecccCcc
Confidence 3589988887 899999999999999999963
No 27
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=94.38 E-value=0.043 Score=48.56 Aligned_cols=68 Identities=24% Similarity=0.395 Sum_probs=57.1
Q ss_pred chhHHHHHHHHHHHHHHHHhh----hcCCcccccccccchhhHHHHHhhhcCCChHHHHHHHHHHHhhcccc
Q psy2928 281 TGDARKQLSKYAEAAKKLIES----RNANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPH 348 (744)
Q Consensus 281 ~~eark~l~~yaeaakk~ies----r~as~esrkvvkwn~ed~~~wlr~~~~at~~d~~~rl~hl~~qc~ph 348 (744)
..|||-+|..|+-.+++.|+. ...+++-++-++--++++..||.....|+.++|.++++.|.+.|+|-
T Consensus 7 ~ieakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~~~~i 78 (113)
T 3lof_A 7 RVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPI 78 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999976 34566667777778889999999887889999999999998877664
No 28
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=93.65 E-value=0.014 Score=45.48 Aligned_cols=36 Identities=25% Similarity=0.623 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 81 ~~~l~~el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
...||+ ||++..+ ..+|+||+|..|+++-||-|.+.
T Consensus 8 ~~~LP~-----gWe~~~~-~~Gr~Yyinh~t~~TtW~~Pr~~ 43 (46)
T 2ez5_W 8 EEPLPP-----RWSMQVA-PNGRTFFIDHASRRTTWIDPRNG 43 (46)
T ss_dssp SCCCCT-----TEEEEEC-TTSSEEEEETTTTEEESBCTTTC
T ss_pred CCCCCc-----CcEEEEc-CCCCEEEEECCCCCEeccCCCCC
Confidence 345775 9999988 58999999999999999999875
No 29
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=93.23 E-value=0.014 Score=44.33 Aligned_cols=33 Identities=42% Similarity=1.063 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHhHHHHhhcccCCCcceeccCCcccccCCC
Q psy2928 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQ 120 (744)
Q Consensus 81 ~~~l~~el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~ 120 (744)
...||+ ||++.-+.. ++ ||||..|+++-||-|.
T Consensus 6 ~~~LP~-----GWe~~~~~~-G~-YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 6 SGGLPP-----GWRKIHDAA-GT-YYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CCCCCT-----TEEEEEETT-EE-EEEESSSCCEESSCCC
T ss_pred CCCCCC-----CcEEEEcCC-CC-EEEEcCCCCEeccCCC
Confidence 346774 898887665 54 9999999999999885
No 30
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=92.94 E-value=0.0095 Score=50.06 Aligned_cols=30 Identities=33% Similarity=0.742 Sum_probs=26.0
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQG 121 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~~ 121 (744)
.||.+..+. .+|.||+|..||+|-||-|..
T Consensus 5 ~~W~e~~~~-~G~~YYyN~~T~~s~We~P~~ 34 (75)
T 2jxw_A 5 GRWVEGITS-EGYHYYYDLISGASQWEKPEG 34 (75)
T ss_dssp CCEEEEEET-TTEEEEEETTTTEEECSCCSS
T ss_pred CCcEEEECC-CCCEEEEECCCCCEeecCCCc
Confidence 478888776 599999999999999999963
No 31
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.42 E-value=0.038 Score=47.63 Aligned_cols=27 Identities=30% Similarity=0.960 Sum_probs=23.9
Q ss_pred HHHHhhcccCCCcceeccCCcccccCCC
Q psy2928 93 WRKFWSKRENRPYYWNRASGESLWDMPQ 120 (744)
Q Consensus 93 w~k~wskre~rpy~~nk~t~~slwe~p~ 120 (744)
|...|. .++|-||||..|.+|.||.|.
T Consensus 22 W~~v~T-~dGR~fyyN~~Tk~S~WekP~ 48 (73)
T 2dk7_A 22 WCVVWT-GDERVFFYNPTTRLSMWDRPD 48 (73)
T ss_dssp CEEEEE-SSSCEEEEETTTTEECSSCCT
T ss_pred cEEEEC-CCCCEEEecCcccceeccCCh
Confidence 777774 689999999999999999995
No 32
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=92.21 E-value=0.015 Score=46.11 Aligned_cols=37 Identities=27% Similarity=0.575 Sum_probs=31.3
Q ss_pred CCCCCCHHHHHHhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 80 IDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 80 ~~~~l~~el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
....||+ ||++..+ ..+|+||+|..|+++-||-|.+.
T Consensus 10 ~~~~LP~-----GWe~~~d-~~Gr~YYvnh~t~~T~We~P~~~ 46 (49)
T 2zaj_A 10 SELELPA-----GWEKIED-PVYGIYYVDHINRKTQYENPSGP 46 (49)
T ss_dssp CSSCCCT-----TEEEEEE-TTTEEEEEETTTTEEESSCCCSS
T ss_pred CCCCCCc-----CceEEEc-CCCCEEEEeCCCCCEecCCCCCC
Confidence 3456774 8999988 68999999999999999999764
No 33
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=92.12 E-value=0.2 Score=45.00 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=57.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHhh----hcCCcccccccccchhhHHHHHhhhcCCChHHHHHHHHHHHhhcccc
Q psy2928 279 KYTGDARKQLSKYAEAAKKLIES----RNANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPH 348 (744)
Q Consensus 279 k~~~eark~l~~yaeaakk~ies----r~as~esrkvvkwn~ed~~~wlr~~~~at~~d~~~rl~hl~~qc~ph 348 (744)
+-..|||-+|..|+-.+++.+++ ...+++-++-++--++++..||.....|+.++|.++++.|.+.|.+-
T Consensus 14 re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i 87 (120)
T 2p32_A 14 LVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPI 87 (120)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999976 24567777777778889999998766789999999999888776544
No 34
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=91.81 E-value=0.027 Score=48.91 Aligned_cols=31 Identities=19% Similarity=0.391 Sum_probs=28.7
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
.||++.++ .++|.||+|..|+++-||.|.+.
T Consensus 58 ~gWe~~~~-~~G~~Yy~n~~t~~t~w~~Pr~~ 88 (90)
T 2kxq_A 58 PGWEIRNT-ATGRVYFVDHNNRTTQFTDPRLS 88 (90)
T ss_dssp SSCCEEEC-TTSCEEEEETTTTEEESSCTTTS
T ss_pred CCceEEEC-CCCCEEEEECCCCcEecCCCCcC
Confidence 59999998 68999999999999999999875
No 35
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=91.62 E-value=0.034 Score=45.33 Aligned_cols=37 Identities=16% Similarity=0.456 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHhHHHHhhcccCCCcceeccCCcccccCCCCCC
Q psy2928 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSG 123 (744)
Q Consensus 81 ~~~l~~el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~~~ 123 (744)
...|| .||++..+ ..+|+||+|..|.++-||-|.+..
T Consensus 12 ~~~LP-----~GWe~~~~-~~Gr~Yyinh~tk~TtWe~Pr~~~ 48 (57)
T 2ysd_A 12 LGPLP-----ENWEMAYT-ENGEVYFIDHNTKTTSWLDPRCLN 48 (57)
T ss_dssp CCSCC-----SSEEEEEC-SSCCEEEEETTTTEEESSCTTTCS
T ss_pred CCCCC-----cCcEEEEC-CCCCEEEEECCCCcEecCCCCCcc
Confidence 44576 49999888 489999999999999999998864
No 36
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=91.54 E-value=0.023 Score=43.04 Aligned_cols=29 Identities=28% Similarity=0.887 Sum_probs=24.6
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQG 121 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~~ 121 (744)
.||++.=+. .+ .||||..|+++-||-|..
T Consensus 6 ~GWe~~~d~-~g-~YY~n~~t~~tqWe~P~~ 34 (38)
T 2ho2_A 6 AGWMRVQDT-SG-TYYWHIPTGTTQWEPPGR 34 (38)
T ss_dssp TTEEEEECS-SC-EEEEETTTTEEESSCCCC
T ss_pred CCceEEEeC-CC-CEEEecCCCCEeccCCCC
Confidence 478887775 56 999999999999999964
No 37
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=91.32 E-value=0.022 Score=49.20 Aligned_cols=30 Identities=10% Similarity=0.474 Sum_probs=27.5
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQG 121 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~~ 121 (744)
.||++..+ -++|.||+|..|+++-||.|.|
T Consensus 59 ~gWe~~~~-~~G~~Yy~nh~t~~ttw~~Prl 88 (88)
T 1tk7_A 59 PGWEIRYT-AAGERFFVDHNTRRTTFEDPRP 88 (88)
T ss_dssp SSCEEEEE-TTTEEEEEETTTTEEESSSSCC
T ss_pred CceEEEEC-CCCCEEEEECCCCcEeCCCCCC
Confidence 49999988 5799999999999999999975
No 38
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=90.91 E-value=0.024 Score=44.80 Aligned_cols=36 Identities=31% Similarity=0.681 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 81 ~~~l~~el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
..+||+ ||++..+. .+|.||+|..|+++-||-|.+.
T Consensus 11 ~~~LP~-----GWe~~~d~-~g~~YYvnh~t~~T~We~P~~~ 46 (49)
T 2dwv_A 11 REGLPP-----GWERVESS-EFGTYYVDHTNKRAQYRHPSGP 46 (49)
T ss_dssp SSCCCT-----TEEEEEET-TTEEEEEETTTTEEESSCCCCC
T ss_pred CCCCCc-----CcEEEECC-CCCEEEEECCCCCEeccCcCCC
Confidence 356774 89999885 8999999999999999999763
No 39
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=90.51 E-value=0.038 Score=43.73 Aligned_cols=31 Identities=29% Similarity=0.773 Sum_probs=28.1
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
.||++-.+. .+|+||+|-.|.++-||-|...
T Consensus 14 ~gWe~~~~~-~Gr~Yy~nh~t~~T~W~~P~~~ 44 (49)
T 2ysb_A 14 PGWSVDWTM-RGRKYYIDHNTNTTHWSHPLES 44 (49)
T ss_dssp TTEEEEECS-SSCEEEEETTTTEEESSCTTTS
T ss_pred CCceEEECC-CCCEEEEEcCCCCEEecCCCCC
Confidence 499999885 8999999999999999999875
No 40
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=90.28 E-value=0.033 Score=46.32 Aligned_cols=29 Identities=28% Similarity=0.679 Sum_probs=24.6
Q ss_pred hHHHHhhcccCCCcceeccCCcccccCCCC
Q psy2928 92 GWRKFWSKRENRPYYWNRASGESLWDMPQG 121 (744)
Q Consensus 92 gw~k~wskre~rpy~~nk~t~~slwe~p~~ 121 (744)
||...-+. .+|.||+|..|++|-||-|..
T Consensus 3 ~W~~~~~~-~Gr~YY~n~~T~~s~W~~P~~ 31 (75)
T 1o6w_A 3 IWKEAKDA-SGRIYYYNTLTKKSTWEKPKE 31 (75)
T ss_dssp CEEEEECT-TCCEEEEETTTTEEESSCCHH
T ss_pred CCeEEECC-CCCeEEEECCCCCEEeecchh
Confidence 56666665 899999999999999999863
No 41
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=89.69 E-value=0.053 Score=43.60 Aligned_cols=36 Identities=14% Similarity=0.514 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 81 ~~~l~~el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
...|| .||++..+ ..+|+||.|..|.++-||=|.++
T Consensus 16 ~~~LP-----~GWe~~~~-~~Gr~Yyinh~tk~TtW~dPr~~ 51 (53)
T 2jmf_A 16 EGPLP-----PGWEIRYT-AAGERFFVDHNTRRTTFEDPRPG 51 (53)
T ss_dssp CSCCC-----TTEEEEEC-TTSCEEEEETTTCCEESSCCCSS
T ss_pred CCCCC-----cCcEEEEc-CCCCEEEEeCCCCcEecCCCCCC
Confidence 34577 49999888 68999999999999999999875
No 42
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=89.23 E-value=0.07 Score=46.11 Aligned_cols=31 Identities=29% Similarity=0.707 Sum_probs=27.4
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
.||++.-+ ..+|.||+|..|+++-||-|...
T Consensus 15 ~gWe~~~~-~~Gr~Yy~n~~t~~t~W~~P~~~ 45 (88)
T 1tk7_A 15 DGWEKKIQ-SDNRVYFVNHKNRTTQWEDPRTQ 45 (88)
T ss_dssp SSCCEEEE-TTTEEEEEETTTTEEEEESCCCT
T ss_pred CCcEEEEC-CCCCEEEEECCCCCeEeeccccc
Confidence 48988877 58999999999999999999765
No 43
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=89.21 E-value=0.056 Score=51.68 Aligned_cols=32 Identities=38% Similarity=0.890 Sum_probs=27.0
Q ss_pred hHHHHhhcccCCCcceeccCCcccccCCCCCC
Q psy2928 92 GWRKFWSKRENRPYYWNRASGESLWDMPQGSG 123 (744)
Q Consensus 92 gw~k~wskre~rpy~~nk~t~~slwe~p~~~~ 123 (744)
||...+++-.+|+||+|..|+++-||-|....
T Consensus 13 gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~~ 44 (166)
T 3tc5_A 13 GWEKAMSRSSGRVYYFNHITNASQWERPSGNS 44 (166)
T ss_dssp TEEEEECTTTCCEEEEETTTCCEESSCC----
T ss_pred CceEEEcCCCCCEEEEECCCCCEEecCCCCCc
Confidence 99999998889999999999999999986543
No 44
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.85 E-value=0.068 Score=44.19 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=31.9
Q ss_pred CCCCCCCCHHHHHHhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 78 SYIDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 78 ~~~~~~l~~el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
.+...+||+ ||++.-+ ..+|+||+|..|.++-||-|.+.
T Consensus 8 ~d~~~~LP~-----GWE~~~d-~~Gr~YYvnh~tk~T~We~P~~~ 46 (60)
T 2yse_A 8 LDSELELPA-----GWEKIED-PVYGIYYVDHINRKTQYENPVLE 46 (60)
T ss_dssp CCCCSSCCS-----SEEEEEC-SSSCEEEEETTTTEEESSCHHHH
T ss_pred cCCCCCCCC-----CcEEEEC-CCCCEEEEeCCCCCeeccCCCch
Confidence 334556774 8998888 68999999999999999998764
No 45
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=88.80 E-value=0.067 Score=43.10 Aligned_cols=36 Identities=14% Similarity=0.381 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 81 ~~~l~~el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
..+|| .||++..+ ..+|+||+|-.|.++-||-|.+.
T Consensus 9 ~~~LP-----~GWe~~~~-~~G~~Yyinh~tk~TtwedPr~~ 44 (54)
T 1wmv_A 9 AGDLP-----YGWEQETD-ENGQVFFVDHINKRTTYLDPRLA 44 (54)
T ss_dssp SSCSC-----TTEEEEEC-TTSCEEEEESSSCCEESSCTTSS
T ss_pred CCCCC-----cCcEEEEC-CCCCEEEEeCCCCCEeecCCCCc
Confidence 34577 48998888 58999999999999999999875
No 46
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=87.84 E-value=0.18 Score=44.33 Aligned_cols=66 Identities=21% Similarity=0.377 Sum_probs=49.4
Q ss_pred chhHHHHHHHHHHHHHHHHh--hh--cCCcccccccccchhhHHHHHhhhcCCChHHHHHHHHHHHhhcc
Q psy2928 281 TGDARKQLSKYAEAAKKLIE--SR--NANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQ 346 (744)
Q Consensus 281 ~~eark~l~~yaeaakk~ie--sr--~as~esrkvvkwn~ed~~~wlr~~~~at~~d~~~rl~hl~~qc~ 346 (744)
..|||-+|..|+..+++.++ +- ..+++-++-++--++++..||.....|+.++|.++++.|.+.|.
T Consensus 2 l~EarN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~~~~ 71 (113)
T 1ud0_A 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCN 71 (113)
T ss_dssp --CCHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHH
Confidence 35889999999999999997 32 45667777777888899999974444577888888777765544
No 47
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=87.41 E-value=0.088 Score=50.26 Aligned_cols=30 Identities=33% Similarity=0.711 Sum_probs=28.6
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQ 120 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~ 120 (744)
.||++--|+-.|++||+|..|.++.|+.|.
T Consensus 10 ~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~ 39 (177)
T 1yw5_A 10 PNWTIRVSRSHNKEYFLNQSTNESSWDPPY 39 (177)
T ss_dssp TTEEEEECSSTTCEEEEETTTCCEESSCCT
T ss_pred chHHHHhcccCCchhhhhHHHhhHhhcCcc
Confidence 599999999999999999999999999886
No 48
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli}
Probab=83.70 E-value=0.98 Score=39.91 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=34.4
Q ss_pred cccccchhhHHHHHhhhc---------------------CCChHHHHHH-----------HHHHHhhcccchhhHhhh
Q psy2928 310 KVVKWNAEDTFLWLRKTV---------------------GATYDDFQER-----------LNHLKTQCQPHLTETVKD 355 (744)
Q Consensus 310 kvvkwn~ed~~~wlr~~~---------------------~at~~d~~~r-----------l~hl~~qc~ph~~e~~k~ 355 (744)
-...|+.++..+||+-.. .-|.|||+.| |++||++|+.+..+++.+
T Consensus 11 DP~~WS~~~V~~WL~w~~~ef~L~~i~~~~f~mdGk~Lc~Lt~edF~~~~p~~GdiL~~hL~~Lk~~~~~~~~~~~~~ 88 (93)
T 2qar_B 11 QPIYWSRDDVAQWLKWAENEFSLSPIDSNTFEMNGKALLLLTKEDFRYRSPHSGDVLYELLQHILKQRDLEAEAAAAE 88 (93)
T ss_dssp CGGGCCHHHHHHHHHHHHHHTTCCCCCGGGGCSCHHHHTTCCHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCCcchhcCCCCHHHHHcCCHHHHhhhCCcchHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 345689999988886442 3478888876 888999998888777654
No 49
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=83.23 E-value=0.14 Score=44.32 Aligned_cols=31 Identities=19% Similarity=0.542 Sum_probs=27.3
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
.||.+.-+. .+|.||+|..|+++-||-|...
T Consensus 12 ~gWe~~~~~-~Gr~YY~n~~t~~t~W~~P~~~ 42 (90)
T 2kxq_A 12 EGYEQRTTQ-QGQVYFLHTQTGVSTWHDPRVP 42 (90)
T ss_dssp SSCEEEEET-TTEEEEEETTTTEEESSCSSSC
T ss_pred CCcEEEECC-CCCEEEEECCCCeEeeeccccc
Confidence 489888874 8999999999999999999764
No 50
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=79.90 E-value=1.7 Score=43.10 Aligned_cols=66 Identities=11% Similarity=0.131 Sum_probs=54.8
Q ss_pred chhHHHHHHHHHHHHHHHHhhh--cCCcccccccccchhhHHHHHhhhcCCChHHHHHHHHHHHhhcccch
Q psy2928 281 TGDARKQLSKYAEAAKKLIESR--NANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHL 349 (744)
Q Consensus 281 ~~eark~l~~yaeaakk~iesr--~as~esrkvvkwn~ed~~~wlr~~~~at~~d~~~rl~hl~~qc~ph~ 349 (744)
..|||.+|..|...+++.+++- ..+++-++-++--++++.+||..+ +.++|.++++.|++.|+|-.
T Consensus 144 ~~e~kn~le~~i~~~~~~l~~~~~~l~~~~k~~i~~~l~~~~~~L~~~---~~~~i~~~~~~L~~~~~~i~ 211 (219)
T 4e81_A 144 LVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQELAQVSQKLM 211 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999863 456676777777788899999865 79999999999999887654
No 51
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=79.13 E-value=0.39 Score=36.83 Aligned_cols=31 Identities=19% Similarity=0.540 Sum_probs=27.6
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
.||+..-+ ..+|.||.|-.|.++-|+=|...
T Consensus 11 ~GWe~~~~-~~gr~y~~n~~t~~t~W~dPr~~ 41 (46)
T 1jmq_A 11 AGWEMAKT-SSGQRYFKNHIDQTTTWQDPRKA 41 (46)
T ss_dssp TTBCCBCC-SSCCCBEEETTTTEEESSCTTTS
T ss_pred cCcEEEEc-CCCceEEEEecCCceeecCCCch
Confidence 49998876 78999999999999999988765
No 52
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=78.24 E-value=2.2 Score=48.39 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=56.6
Q ss_pred chhHHHHHHHHHHHHHHHHhhh---cCCcccccccccchhhHHHHHhhh-cCCChHHHHHHHHHHHhhcccchh
Q psy2928 281 TGDARKQLSKYAEAAKKLIESR---NANSESRKVVKWNAEDTFLWLRKT-VGATYDDFQERLNHLKTQCQPHLT 350 (744)
Q Consensus 281 ~~eark~l~~yaeaakk~iesr---~as~esrkvvkwn~ed~~~wlr~~-~~at~~d~~~rl~hl~~qc~ph~~ 350 (744)
+.|||..|..|...+++.++.. -.+++-++-++--++++-+||..+ ..++.++|.++++.|++.|+|-..
T Consensus 549 ~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~~~~~l~~~~~~i~~ 622 (675)
T 3d2f_A 549 TEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRG 622 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTGGGSCHHHHHHHHHHHHHHHHHTTTGGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999988752 356666777777788888999754 368999999999999999987654
No 53
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=73.38 E-value=3.9 Score=40.34 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=53.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhh--cCCcccccccccchhhHHHHHhhhcCCChHHHHHHHHHHHhhcccch
Q psy2928 281 TGDARKQLSKYAEAAKKLIESR--NANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHL 349 (744)
Q Consensus 281 ~~eark~l~~yaeaakk~iesr--~as~esrkvvkwn~ed~~~wlr~~~~at~~d~~~rl~hl~~qc~ph~ 349 (744)
+.+||.+|..|...+++.+++- .++++-++-+.--++++.+||. +.+.++|.++++.|++.|.|-.
T Consensus 141 ~~e~kn~le~~i~~~~~~l~~~~~~~~~~~k~~i~~~l~~~~~wl~---~~d~~~~~~~~~~L~~~~~~i~ 208 (227)
T 1u00_A 141 LAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQ---GDDVDAIEQAIKNVDKQTQDFA 208 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999888753 4566667777777888889997 3368999999999998887643
No 54
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=69.48 E-value=0.61 Score=38.37 Aligned_cols=34 Identities=32% Similarity=0.945 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHhHHHHhhcccCCCcceeccCCcccccCCCC
Q psy2928 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQG 121 (744)
Q Consensus 81 ~~~l~~el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~ 121 (744)
..+||+ ||++.=.. .+ .||||..||..-||.|..
T Consensus 17 ~~~LPp-----GW~~~~D~-sG-tYY~h~~T~tTQWerP~~ 50 (55)
T 2e45_A 17 DSDLPA-----GWMRVQDT-SG-TYYWHIPTGTTQWEPPGR 50 (55)
T ss_dssp CSCCCT-----TEEEEEET-TE-EEEEETTTCCEESSCCCC
T ss_pred CCCCCC-----CCeEeecC-CC-CEEEEcCCCCCccCCCCC
Confidence 445775 88887555 44 999999999999999964
No 55
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=58.84 E-value=8.7 Score=42.77 Aligned_cols=67 Identities=10% Similarity=0.129 Sum_probs=54.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhh--cCCcccccccccchhhHHHHHhhhcCCChHHHHHHHHHHHhhcccchh
Q psy2928 281 TGDARKQLSKYAEAAKKLIESR--NANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHLT 350 (744)
Q Consensus 281 ~~eark~l~~yaeaakk~iesr--~as~esrkvvkwn~ed~~~wlr~~~~at~~d~~~rl~hl~~qc~ph~~ 350 (744)
..|||..|..|...+++.+++- -.+++-++-++--++++.+||..+ ..++|.++++.|.+.|.+-.+
T Consensus 532 ~~~~~n~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~ 600 (605)
T 4b9q_A 532 LVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQELAQVSQKLME 600 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHH
Confidence 4788888999999999998863 456777777777888999999854 689999999999998876543
No 56
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=56.32 E-value=8.9 Score=42.71 Aligned_cols=66 Identities=11% Similarity=0.131 Sum_probs=53.6
Q ss_pred chhHHHHHHHHHHHHHHHHhhh--cCCcccccccccchhhHHHHHhhhcCCChHHHHHHHHHHHhhcccch
Q psy2928 281 TGDARKQLSKYAEAAKKLIESR--NANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHL 349 (744)
Q Consensus 281 ~~eark~l~~yaeaakk~iesr--~as~esrkvvkwn~ed~~~wlr~~~~at~~d~~~rl~hl~~qc~ph~ 349 (744)
..|||.+|..|...+++.+++- ..+++-++-++--++++-+||.. .+.++|.++++.|++.|.|-.
T Consensus 532 ~~~~~n~~e~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~l~~---~~~~~~~~~~~~l~~~~~~~~ 599 (605)
T 2kho_A 532 LVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKG---EDKAAIEAKMQELAQVSQKLM 599 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTTS---SCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHH
Confidence 5688889999999999888763 35667777777778888899973 389999999999999887654
No 57
>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A {Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A 1lky_B 2qb1_A
Probab=41.32 E-value=23 Score=31.04 Aligned_cols=17 Identities=24% Similarity=0.720 Sum_probs=12.5
Q ss_pred cccccchhhHHHHHhhh
Q psy2928 310 KVVKWNAEDTFLWLRKT 326 (744)
Q Consensus 310 kvvkwn~ed~~~wlr~~ 326 (744)
....|+.|+..+||+-.
T Consensus 11 DP~~WS~~~V~~WL~w~ 27 (89)
T 1ji7_A 11 QPIYWSRDDVAQWLKWA 27 (89)
T ss_dssp CGGGCCHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHH
Confidence 34559999999998644
No 58
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=39.45 E-value=83 Score=31.65 Aligned_cols=78 Identities=28% Similarity=0.474 Sum_probs=45.0
Q ss_pred ccccCCCCchhHHHHHHH----HHHHHHHHHhhhcCCcccccccccchhhHHHHHhhhcCCChHHHHHHHHHHHhhcccc
Q psy2928 273 LKLKKPKYTGDARKQLSK----YAEAAKKLIESRNANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPH 348 (744)
Q Consensus 273 ~kl~~~k~~~eark~l~~----yaeaakk~iesr~as~esrkvvkwn~ed~~~wlr~~~~at~~d~~~rl~hl~~qc~ph 348 (744)
||+..|..|+|-|+.|.| |+|.||--| || +| -|.++.|+.+.+. ..
T Consensus 122 Iri~iP~LTeErRkelvK~ak~~~E~aKvaI--Rn-------------------iR-------rda~~~lKk~~K~--~~ 171 (209)
T 4gfq_A 122 IRIAFPALTEERRRDLVKVVKKYAEEAKVAV--RN-------------------VR-------RDGNDDLKKLEKA--GE 171 (209)
T ss_dssp EEEECCBCCHHHHHHHHHHHHHHHHHHHHHH--HH-------------------HH-------HHHHHHHHHHHHH--TS
T ss_pred eeeeCCCccHHHHHHHHHHHHHHHHHHHHHH--HH-------------------HH-------HHHHHHHHHhccc--CC
Confidence 788999999999998766 344443211 22 22 2344444444332 11
Q ss_pred hhhHhhhhHHHHHHHHHHhhHHHHHHHHh----hhhhHH
Q psy2928 349 LTETVKDSVEKICLKIQHLSTEHAKKIRD----KNSDLL 383 (744)
Q Consensus 349 ~~e~~k~sVe~ic~ki~~lS~e~~~ki~~----k~~~ll 383 (744)
++ .+.+-+.-..|+.|.-+|+++|.+ |-.+||
T Consensus 172 is---EDe~k~~e~eiQklTd~~i~~iD~~l~~KEkEim 207 (209)
T 4gfq_A 172 IT---EDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIM 207 (209)
T ss_dssp SC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 233444555677777788888754 555555
No 59
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=36.82 E-value=27 Score=32.03 Aligned_cols=26 Identities=35% Similarity=0.554 Sum_probs=22.1
Q ss_pred chhhHhhhhHHHHHHHHHHhhHHHHH
Q psy2928 348 HLTETVKDSVEKICLKIQHLSTEHAK 373 (744)
Q Consensus 348 h~~e~~k~sVe~ic~ki~~lS~e~~~ 373 (744)
-|.+.+.+-||.|-+|+|||-.|.|+
T Consensus 69 ~L~dDAed~~~~~~~~~~~~~~~~~~ 94 (107)
T 2wps_A 69 TLMKQIEDKIEEILSKIYHIENEIAR 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778999999999999999875
No 60
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A*
Probab=36.21 E-value=21 Score=32.52 Aligned_cols=14 Identities=14% Similarity=0.494 Sum_probs=10.7
Q ss_pred ccchhhHHHHHhhh
Q psy2928 313 KWNAEDTFLWLRKT 326 (744)
Q Consensus 313 kwn~ed~~~wlr~~ 326 (744)
.|+.++..+||+=.
T Consensus 43 ~WS~~~V~~WL~W~ 56 (110)
T 2jv3_A 43 QWTETHVRDWVMWA 56 (110)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH
Confidence 48888888888633
No 61
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=32.97 E-value=17 Score=29.52 Aligned_cols=15 Identities=60% Similarity=0.747 Sum_probs=13.6
Q ss_pred ChHHHHHHHHHHHhh
Q psy2928 330 TYDDFQERLNHLKTQ 344 (744)
Q Consensus 330 t~~d~~~rl~hl~~q 344 (744)
.-+|+|.||..||++
T Consensus 39 ~ddDLQARLdsLRR~ 53 (54)
T 2v6x_B 39 PDDDLQARLNTLKKQ 53 (54)
T ss_dssp CCHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHhccC
Confidence 579999999999985
No 62
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=32.07 E-value=71 Score=26.49 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=26.9
Q ss_pred HhhhhHHHHHHHHHHhhHHHHHHHHh--hhhhHHhhcCCC
Q psy2928 352 TVKDSVEKICLKIQHLSTEHAKKIRD--KNSDLLTANGIQ 389 (744)
Q Consensus 352 ~~k~sVe~ic~ki~~lS~e~~~ki~~--k~~~llke~gi~ 389 (744)
.+|..=+.++.||+||-..-+++=+| +...+|++||+-
T Consensus 15 kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqHgl~ 54 (58)
T 3a2a_A 15 RLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQHGLL 54 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 34445567889999997777777555 889999999973
No 63
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=31.76 E-value=25 Score=30.63 Aligned_cols=20 Identities=10% Similarity=0.459 Sum_probs=17.6
Q ss_pred cccccccchhhHHHHHhhhc
Q psy2928 308 SRKVVKWNAEDTFLWLRKTV 327 (744)
Q Consensus 308 srkvvkwn~ed~~~wlr~~~ 327 (744)
...|..|++||..+||++..
T Consensus 11 ~~~v~~WsvedV~~wl~~~~ 30 (89)
T 1pk1_B 11 RSQPIDWTIEEVIQYIESND 30 (89)
T ss_dssp CCCGGGCCHHHHHHHHHHHC
T ss_pred CCCchhCCHHHHHHHHHHHc
Confidence 56788999999999999875
No 64
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=31.27 E-value=2e+02 Score=28.30 Aligned_cols=18 Identities=28% Similarity=0.619 Sum_probs=16.0
Q ss_pred ccccCCCCchhHHHHHHH
Q psy2928 273 LKLKKPKYTGDARKQLSK 290 (744)
Q Consensus 273 ~kl~~~k~~~eark~l~~ 290 (744)
|||..|..|+|-|+.|.|
T Consensus 98 Iri~iP~lTeErRkelvK 115 (185)
T 1wqg_A 98 IRVAVPQLTEERRRELVK 115 (185)
T ss_dssp EEEECCCCCHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHH
Confidence 889999999999988765
No 65
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.16 E-value=24 Score=31.00 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=17.3
Q ss_pred cccccccchhhHHHHHhhhc
Q psy2928 308 SRKVVKWNAEDTFLWLRKTV 327 (744)
Q Consensus 308 srkvvkwn~ed~~~wlr~~~ 327 (744)
...|.+|+++|.-+||+...
T Consensus 24 ~~~v~~Ws~~~V~~WL~~lg 43 (103)
T 2e8o_A 24 HPDYKTWGPEQVCSFLRRGG 43 (103)
T ss_dssp CSCGGGCHHHHHHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHHHcC
Confidence 66788899999999999763
No 66
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=29.73 E-value=1e+02 Score=32.55 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCcccccccccchhhHHHHHhhhcCCChHHHHHHHHHHHhhc--ccchhhHhhhhHHHH
Q psy2928 283 DARKQLSKYAEAAKKLIESRNANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQC--QPHLTETVKDSVEKI 360 (744)
Q Consensus 283 eark~l~~yaeaakk~iesr~as~esrkvvkwn~ed~~~wlr~~~~at~~d~~~rl~hl~~qc--~ph~~e~~k~sVe~i 360 (744)
++..-|....+.++++|++-.+.- ..+++.+||+|. .++.|+-|..++.|. -+|..-++.+|.|.-
T Consensus 370 t~eeal~~~~~~i~~~l~~~~~~~--------e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGLRAVM--------EARNVTHLLQQE----LTEAQKGFQDVEAQAATANHTVMALMASLDAE 437 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHH--------HhhhHHHHHHHH----HHHHhhhHHHHHHHhhhcchhHHHHHHHHHHH
Confidence 345556666677777776653333 455777799987 789999999999998 489988999998865
Q ss_pred HHH
Q psy2928 361 CLK 363 (744)
Q Consensus 361 c~k 363 (744)
.++
T Consensus 438 ~~~ 440 (471)
T 3mq9_A 438 KAQ 440 (471)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 67
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=29.73 E-value=1.7e+02 Score=28.83 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=16.0
Q ss_pred ccccCCCCchhHHHHHHH
Q psy2928 273 LKLKKPKYTGDARKQLSK 290 (744)
Q Consensus 273 ~kl~~~k~~~eark~l~~ 290 (744)
|||..|..|+|-|+.|.|
T Consensus 99 Iri~iP~lTeErRkelvK 116 (185)
T 1eh1_A 99 LYINIPPLTEERRKDLVR 116 (185)
T ss_dssp EEEECCCCCTTHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHH
Confidence 789999999999988765
No 68
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=29.13 E-value=2.2e+02 Score=27.93 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=16.0
Q ss_pred ccccCCCCchhHHHHHHH
Q psy2928 273 LKLKKPKYTGDARKQLSK 290 (744)
Q Consensus 273 ~kl~~~k~~~eark~l~~ 290 (744)
|||..|..|+|-|+.|.|
T Consensus 98 Iri~iP~lTeErRkelvK 115 (185)
T 1ise_A 98 IRVPLPPLTEERRKDLTK 115 (185)
T ss_dssp EEEECCCCCHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHH
Confidence 789999999999988765
No 69
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=28.20 E-value=2.1e+02 Score=28.05 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=16.0
Q ss_pred ccccCCCCchhHHHHHHH
Q psy2928 273 LKLKKPKYTGDARKQLSK 290 (744)
Q Consensus 273 ~kl~~~k~~~eark~l~~ 290 (744)
|||..|..|+|-|+.|.|
T Consensus 98 Iri~iP~lTeErRkelvK 115 (185)
T 1is1_A 98 IRVPLPPLTEERRKDLVK 115 (185)
T ss_dssp EEEECCCCCHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHH
Confidence 889999999999988765
No 70
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=27.90 E-value=2.2e+02 Score=28.02 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=16.0
Q ss_pred ccccCCCCchhHHHHHHH
Q psy2928 273 LKLKKPKYTGDARKQLSK 290 (744)
Q Consensus 273 ~kl~~~k~~~eark~l~~ 290 (744)
|||..|..|+|-|+.|.|
T Consensus 98 Iri~iP~lTeErRkelvK 115 (185)
T 1dd5_A 98 IRLVFPSPTTEQREKWVK 115 (185)
T ss_dssp EEEECCCCCHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHH
Confidence 889999999999988765
No 71
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=25.23 E-value=2e+02 Score=28.20 Aligned_cols=29 Identities=17% Similarity=0.480 Sum_probs=21.5
Q ss_pred hHHHHHhhccc---------ccccCCCCchhHHHHHHH
Q psy2928 262 CMYREIMNDIP---------LKLKKPKYTGDARKQLSK 290 (744)
Q Consensus 262 sm~rEIm~DiP---------~kl~~~k~~~eark~l~~ 290 (744)
.+.+-|++|+- ||+..|..|+|-|+.|.|
T Consensus 80 ~IekAI~~dLglnP~~dG~~Iri~iP~lTeErRkelvK 117 (184)
T 1ge9_A 80 AIEKAIREELNLNPTVQGNVIRVTLPPLTEERRRELVR 117 (184)
T ss_dssp HHHHHHHHHHCSCCEEETTEEEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcccCCCEEEEeCCCCCHHHHHHHHH
Confidence 44555555443 889999999999988765
No 72
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=25.19 E-value=56 Score=28.38 Aligned_cols=9 Identities=22% Similarity=0.287 Sum_probs=6.0
Q ss_pred HHHHHhhcc
Q psy2928 338 LNHLKTQCQ 346 (744)
Q Consensus 338 l~hl~~qc~ 346 (744)
|+.||++++
T Consensus 69 L~~Lk~~~~ 77 (85)
T 1sv0_A 69 LQMLIIESH 77 (85)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 777777664
No 73
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=23.94 E-value=45 Score=27.32 Aligned_cols=27 Identities=22% Similarity=0.671 Sum_probs=19.3
Q ss_pred ccccccchhhHHHHHhhh-cCCChHHHHHH
Q psy2928 309 RKVVKWNAEDTFLWLRKT-VGATYDDFQER 337 (744)
Q Consensus 309 rkvvkwn~ed~~~wlr~~-~~at~~d~~~r 337 (744)
+.|..|+++|.-+||+.. .+ +.+|.+.
T Consensus 1 k~v~~Wt~~~V~~WL~~~~~g--l~~y~~~ 28 (78)
T 3bs7_A 1 KAVYLWTVSDVLKWYRRHCGE--YTQYEQL 28 (78)
T ss_dssp CCGGGCCHHHHHHHHHHHSGG--GGGGHHH
T ss_pred CChhhCCHHHHHHHHHHHhcC--HHHHHHH
Confidence 357789999999999985 33 4445433
No 74
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=23.42 E-value=1.4e+02 Score=24.06 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=28.1
Q ss_pred HhhhhHHHHHHHHHHhhHHHHHHHHh--hhhhHHhhcCC
Q psy2928 352 TVKDSVEKICLKIQHLSTEHAKKIRD--KNSDLLTANGI 388 (744)
Q Consensus 352 ~~k~sVe~ic~ki~~lS~e~~~ki~~--k~~~llke~gi 388 (744)
..|.+-+.++.||.||---..++-+| +...+||.||.
T Consensus 8 kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqHgl 46 (48)
T 3vmx_A 8 RLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQNGL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcCC
Confidence 34667778888888886666666665 77899999985
No 75
>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase regulator; 2.56A {Escherichia coli}
Probab=23.20 E-value=80 Score=31.59 Aligned_cols=14 Identities=29% Similarity=0.807 Sum_probs=11.1
Q ss_pred ccchhhHHHHHhhh
Q psy2928 313 KWNAEDTFLWLRKT 326 (744)
Q Consensus 313 kwn~ed~~~wlr~~ 326 (744)
.|+.++..+||+=.
T Consensus 14 ~Wt~~~V~~Wl~w~ 27 (241)
T 2qb0_B 14 YWSRDDVAQWLKWA 27 (241)
T ss_dssp GCCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH
Confidence 48888888888754
No 76
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=22.81 E-value=14 Score=33.96 Aligned_cols=31 Identities=13% Similarity=0.370 Sum_probs=27.9
Q ss_pred HhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928 91 QGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122 (744)
Q Consensus 91 ~gw~k~wskre~rpy~~nk~t~~slwe~p~~~ 122 (744)
.||++-.+. .+|+||-|-.|...-|+=|.+.
T Consensus 75 ~GWE~r~d~-~Gr~YfIdH~tktTtW~dPRl~ 105 (109)
T 3l4h_A 75 RGWEIKTDQ-QGKSFFVDHNSRATTFIDPRIP 105 (109)
T ss_dssp TTEEEEECT-TCCEEEEETTTTEEESSCSCCS
T ss_pred CCCeEEECC-CCCEEEEeCCCCCEeeCCCCcc
Confidence 589888887 8999999999999999998775
No 77
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=22.52 E-value=90 Score=28.52 Aligned_cols=42 Identities=29% Similarity=0.446 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhcccchhh--HhhhhHHHHHHHHHHhhHHHHH
Q psy2928 332 DDFQERLNHLKTQCQPHLTE--TVKDSVEKICLKIQHLSTEHAK 373 (744)
Q Consensus 332 ~d~~~rl~hl~~qc~ph~~e--~~k~sVe~ic~ki~~lS~e~~~ 373 (744)
.+..+||..+.+|----..| .+-+-+|.+.+|+|||-.|.|+
T Consensus 58 Qqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar 101 (114)
T 2xzr_A 58 QQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIAR 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34556666666665322222 1235788999999999999875
No 78
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=21.74 E-value=73 Score=31.78 Aligned_cols=93 Identities=19% Similarity=0.224 Sum_probs=44.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhh----cC-----CcccccccccchhhHHHHHhhhcCCChHHHHHH----HHHHHhhccc
Q psy2928 281 TGDARKQLSKYAEAAKKLIESR----NA-----NSESRKVVKWNAEDTFLWLRKTVGATYDDFQER----LNHLKTQCQP 347 (744)
Q Consensus 281 ~~eark~l~~yaeaakk~iesr----~a-----s~esrkvvkwn~ed~~~wlr~~~~at~~d~~~r----l~hl~~qc~p 347 (744)
+++.|.+|..|.+..++-|... +. ..|-++.+.+|+|+ ||+...-=.+++++| +++|+.+=.|
T Consensus 68 ~ee~~~~l~~~~~~lr~~l~kd~ee~r~~l~Py~~el~~~~~~~~ee----lr~~L~P~~eel~~~~~~~~eel~~~L~p 143 (243)
T 2a01_A 68 TQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMEL----YRQKVEPLRAELQEGARQKLHELQEKLSP 143 (243)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCSSCSSTTHHHHHHHHHHHHHHHHHH----HHTTHHHHHHHHHHHHHHHHHHHCCSCCS
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4555666666665555444321 00 12233444455555 444333333444443 4556665555
Q ss_pred chhh---HhhhhHHHHHHHHHHhhHHHHHHHHh
Q psy2928 348 HLTE---TVKDSVEKICLKIQHLSTEHAKKIRD 377 (744)
Q Consensus 348 h~~e---~~k~sVe~ic~ki~~lS~e~~~ki~~ 377 (744)
...+ .+...||.+=.++--+.-|+-.+|.+
T Consensus 144 ~~eelr~kl~~~veelk~~l~P~~ee~r~kl~~ 176 (243)
T 2a01_A 144 LGEEMRDRARAHVDALRTHLAPYSDELRQRLAA 176 (243)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5432 23345666666664444444444443
No 79
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=21.73 E-value=57 Score=28.17 Aligned_cols=27 Identities=19% Similarity=0.549 Sum_probs=20.2
Q ss_pred ccccccchhhHHHHHhhhcCCChHHHHHH
Q psy2928 309 RKVVKWNAEDTFLWLRKTVGATYDDFQER 337 (744)
Q Consensus 309 rkvvkwn~ed~~~wlr~~~~at~~d~~~r 337 (744)
..|..|++||..+||+...+ +++|.+.
T Consensus 12 ~~v~~Ws~edV~~wL~~l~g--l~~y~~~ 38 (89)
T 1kw4_A 12 PPISSWSVDDVSNFIRELPG--CQDYVDD 38 (89)
T ss_dssp CCGGGCCHHHHHHHHHTSTT--CGGGHHH
T ss_pred CCchhCCHHHHHHHHHHCcC--hHHHHHH
Confidence 36888999999999998743 3455544
No 80
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.36 E-value=1.3e+02 Score=34.27 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhcccchh--hHhhhhHHHHHHHHHHhhHHHHHHHHh
Q psy2928 333 DFQERLNHLKTQCQPHLT--ETVKDSVEKICLKIQHLSTEHAKKIRD 377 (744)
Q Consensus 333 d~~~rl~hl~~qc~ph~~--e~~k~sVe~ic~ki~~lS~e~~~ki~~ 377 (744)
|...|+..||.--+..++ .+++++|+.+..||+.|-++..-|||.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555667777777765552 566789999999999999999999865
No 81
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=20.29 E-value=59 Score=26.35 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=20.1
Q ss_pred ccccccchhhHHHHHhhhcCCChHHHHHH
Q psy2928 309 RKVVKWNAEDTFLWLRKTVGATYDDFQER 337 (744)
Q Consensus 309 rkvvkwn~ed~~~wlr~~~~at~~d~~~r 337 (744)
+.|..|+++|.-+||+... +++|.+.
T Consensus 2 ~~v~~Ws~~~V~~WL~~~g---l~~y~~~ 27 (74)
T 2gle_A 2 HMVHEWSVQQVSHWLVGLS---LDQYVSE 27 (74)
T ss_dssp CCGGGCCSGGGHHHHHHTT---THHHHHH
T ss_pred CCcccCCHHHHHHHHHHCC---CHHHHHH
Confidence 5688999999999999653 5566543
No 82
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=20.26 E-value=82 Score=34.78 Aligned_cols=21 Identities=5% Similarity=0.066 Sum_probs=17.9
Q ss_pred hcccCCCHHHHHHHHHHhCCC
Q psy2928 695 FAKWTPTEDKVEKLLDAFRPG 715 (744)
Q Consensus 695 ~~rWp~T~erl~~L~~Afr~~ 715 (744)
.++.+-+++.++.+.++|+..
T Consensus 390 ~k~~~l~~~~i~~i~~~~~~~ 410 (541)
T 2ar0_A 390 GKRTPFTDEHLQPFERVYGED 410 (541)
T ss_dssp SSSSCCCGGGTHHHHHHHCSC
T ss_pred cCCCcCCHHHHHHHHHHHHhc
Confidence 456678999999999999985
No 83
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.18 E-value=57 Score=23.10 Aligned_cols=14 Identities=43% Similarity=0.800 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHhh
Q psy2928 331 YDDFQERLNHLKTQ 344 (744)
Q Consensus 331 ~~d~~~rl~hl~~q 344 (744)
.||.||||..||+.
T Consensus 10 ledlqerlrklrkk 23 (27)
T 3twe_A 10 LEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 68999999998864
Done!