RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2928
(744 letters)
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment,
WW domain, triple-standed beta-sheet, alpha-helix,
nucleus, phosphorylation; NMR {Homo sapiens}
Length = 52
Score = 79.7 bits (196), Expect = 7e-19
Identities = 27/49 (55%), Positives = 33/49 (67%)
Query: 82 HELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGDP 130
LP EL+ GW K WS+RENRPYY+NR + +SLW+MP D I DP
Sbjct: 4 GSLPEELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLGQHDVISDP 52
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 4e-08
Identities = 95/551 (17%), Positives = 154/551 (27%), Gaps = 183/551 (33%)
Query: 170 FILS-GPWDLEIPTNVIILERAPTSMPQPHPEI----ELFRCNLTNKLRHLLQDMCHSRE 224
LS G LE V PT+ E F L D +
Sbjct: 9 LTLSHG--SLEHVLLV------PTAS---FFIASQLQEQFNKILPEPTEGFAAD-----D 52
Query: 225 GIDAPHESFNRWLMERKVIDTGSDPLLPSQCYPEISPCMYRE----IM--NDI---PLKL 275
P E ++L + + +P Q + ++ E + NDI KL
Sbjct: 53 EPTTPAELVGKFL---GYVSSLVEPSKVGQ-FDQVLNLCLTEFENCYLEGNDIHALAAKL 108
Query: 276 KKPKYTGDARKQ--LSKYAEAA-------KKLIES---RNANSESRKVVKW-----NAED 318
+ T + + + Y A K S R + ++V N +D
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 319 TFLWLRKTVGATYDDFQERLNHLKTQCQPHLTETVKDSVEKICLKIQHLSTEHAKKIRDK 378
F LR Y + + L L+E ++ +++ A+K+ +
Sbjct: 169 YFEELRDL----YQTYHVLVGDLIKFSAETLSELIRTTLD-------------AEKVFTQ 211
Query: 379 NSDLLTANGIQEPPPPPST--LNSRKVWCYPIQFSTPSCRMPSIEYHPDKEQIMLRFQND 436
++L ++ P P L S PI SC P I +++ +
Sbjct: 212 GLNILEW--LENPSNTPDKDYLLS-----IPI-----SC--PLIG--------VIQLAHY 249
Query: 437 TVTVNSLHFQKLEHLYRYSCFDDKKFELFLPRVWCLLKRYTTFLGQ--VTAQQDSGLSTW 494
VT L F E T Q VTA + +W
Sbjct: 250 VVTAKLLGFTPGELRSYLKG--------------------ATGHSQGLVTAVAIAETDSW 289
Query: 495 PRNSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQSGKTQASL-PGPVFECLNKHFGVTF 553
E F V + F+G V SL P + + L + GV
Sbjct: 290 -----------ESFFVSVRKAI-TVLFFIG-VRCYEAYPNTSLPPSILEDSLENNEGV-- 334
Query: 554 ECFASPLNCYFRQYCSMFPDTDSYFGSRGPILDLKAVSGSFQAHPPYCEELMEATVGHF- 612
SP M ++S Q ++ + T H
Sbjct: 335 ---PSP----------ML-----------------SISNLTQEQ---VQDYVNKTNSHLP 361
Query: 613 --EHL---LADSPE-------PLSFIVFVPDFRD-PSPSALVKLEASHFKRKQVVVPAFE 659
+ + L + + P S R +PS L + +RK F
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK----LKFS 417
Query: 660 HEF-RIGVQPF 669
+ F + PF
Sbjct: 418 NRFLPVAS-PF 427
Score = 41.2 bits (96), Expect = 0.002
Identities = 40/280 (14%), Positives = 72/280 (25%), Gaps = 97/280 (34%)
Query: 483 VTAQQ--DSGLSTWP---RNSCFDDK---KFELFLPRVWCLLKRYTTFLGQVTAQSGKTQ 534
A Q + P DD+ EL FLG V++ ++
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEPTTPAELV-----------GKFLGYVSSLVEPSK 76
Query: 535 ASLPGPVFECLNKHFGVTF------ECFASPLN---------------CYFR-QYCSMFP 572
V F + A+ L Y + + P
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 573 DT---DS-------------Y--FGSRGPILD----LKAVSGSFQAHPPYCEELMEATVG 610
+S FG +G D L+ + +Q + +L++ +
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL---YQTYHVLVGDLIKFSAE 193
Query: 611 HFEHLLADSPEPLSFIVFVPDFRD--------PSPSALVKLEASHFKRKQVVVPAFEHEF 662
L+ + + + + P L+ + S P
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS--------CPL----- 240
Query: 663 RIGV----QPFVTNKT-DLNVKSMHGTLVVWLQNSAGFAK 697
IGV VT K G L +L+ + G ++
Sbjct: 241 -IGVIQLAHYVVTAKLLGFT----PGELRSYLKGATGHSQ 275
Score = 40.4 bits (94), Expect = 0.003
Identities = 41/274 (14%), Positives = 70/274 (25%), Gaps = 129/274 (47%)
Query: 142 TPNMNMPPQPMK--RRASEGMA--M----GAPL--------------------------- 166
PN ++PP ++ +EG+ M
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 167 PKKFILSGPWDLEIPTNVIILERAPTSMPQPHPEIELFRCNLTNKLRHLLQDMCHSREGI 226
K ++SGP P S+ L LR + G+
Sbjct: 374 AKNLVVSGP---------------PQSL-----------YGLNLTLRKA-----KAPSGL 402
Query: 227 D---APHESFNRWLMERKVIDTGSDPLLPSQCYPEISPCMYREIMNDIPLKLKKPKYTGD 283
D P ERK+ S+ LP ++ P
Sbjct: 403 DQSRIPFS-------ERKL--KFSNRFLP------VA----------SPFH--------- 428
Query: 284 ARKQLSKYAEAAKKLIESRNANSESRKVVKWNAEDTFLWLRKTVGATYD--DFQERLNHL 341
S A LI + V +NA+D ++ V T+D D +
Sbjct: 429 -----SHLLVPASDLINKDLVKNN----VSFNAKD----IQIPVYDTFDGSDLRV----- 470
Query: 342 KTQCQPHLTETVKDSVEKICL---KIQHLSTEHA 372
++E + D + ++ + H
Sbjct: 471 ---LSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Score = 35.8 bits (82), Expect = 0.066
Identities = 48/285 (16%), Positives = 84/285 (29%), Gaps = 103/285 (36%)
Query: 176 WDLEIPT---NVIILERAPTSMPQPHPEIELFR-------CNLTN----KLRHLLQDMCH 221
W LE P+ + L P S P I + + L +LR L+
Sbjct: 218 W-LENPSNTPDKDYLLSIPISCPL----IGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 222 SREGIDAPH--------ESFNRWLMERKVID----TGSDPLLPSQ-CYP--EISPCMYRE 266
+G+ ESF + RK I G + YP + P + +
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSV--RKAITVLFFIG----VRCYEAYPNTSLPPSILED 326
Query: 267 IMND---IP---LKLKKPKYTGDARKQLSKYAEAAKKLIESRNANSESRKVVK---WNAE 317
+ + +P L + ++Q+ Y + N++ + K V+ N
Sbjct: 327 SLENNEGVPSPMLSIS-----NLTQEQVQDY-------VNKTNSHLPAGKQVEISLVNGA 374
Query: 318 DTF-------------LWLRKTVGATYDD-----FQERLNHLKTQCQ------P-HLTET 352
L LRK + D F ER LK + P H +
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER--KLKFSNRFLPVASPFH-SHL 431
Query: 353 VKDSVEKIC--------------LKIQHLSTEHAKKIRDKNSDLL 383
+ + + I ++I T +R + +
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Score = 34.3 bits (78), Expect = 0.19
Identities = 37/227 (16%), Positives = 62/227 (27%), Gaps = 109/227 (48%)
Query: 12 APTTSWDSMSVPQGPPIPITHENIQQVMV-----------PVPIKMQPPPNLNPMMEHGN 60
A T SW+S ++++ + P PP L +E+
Sbjct: 284 AETDSWESF-----------FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 61 --PMQQGPM-----TPHQGVQMGGSYIDH---ELPPE------LIQQGWRKFWSKRENRP 104
P PM + VQ Y++ LP L+ N
Sbjct: 333 GVP---SPMLSISNLTQEQVQ---DYVNKTNSHLPAGKQVEISLV------------NGA 374
Query: 105 YYWNRA---SG--ESLWDM---------PQG----------------SGFDPIGDPLGIC 134
+ SG +SL+ + P G + F P+ P
Sbjct: 375 ----KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF--- 427
Query: 135 AGPPPPHTPNMNMPPQPMKRRASEGMAMGAPLPKKFILSGPWDLEIP 181
H+ + AS+ + L K + D++IP
Sbjct: 428 ------HSHLL--------VPASDLIN--KDLVKNNVSFNAKDIQIP 458
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group
IV, rotamase; NMR {Emericella nidulans}
Length = 54
Score = 45.7 bits (108), Expect = 7e-07
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 77 GSYIDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQG 121
GS ++ LP GW S +N PYY+N A+ ES W+ P
Sbjct: 1 GSMVNTGLPA-----GWEVRHSNSKNLPYYFNPATRESRWEPPAD 40
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.6 bits (120), Expect = 2e-06
Identities = 86/595 (14%), Positives = 159/595 (26%), Gaps = 200/595 (33%)
Query: 80 IDHEL-PPELIQQGWRKFW---SKREN----------RPYY---WNRASGESLWDMPQGS 122
IDH + + + R FW SK+E R Y + E
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 123 GFDPIGDPLGICAGPPPPHTPNMNMP-PQPMK---------RRAS----EGM-------- 160
+ D L N+ QP R A +G+
Sbjct: 111 MYIEQRDRL---YNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 161 AMGAPLPKKFILSGP----W-----------DLEIPTNVI-ILERAPTSMPQPHPEIELF 204
A+ L K W LE+ ++ ++ TS I+L
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 205 RCNLTNKLRHLLQDMCHSR-----------EGIDAPHESFN---RWLM---ERKVIDTGS 247
++ +LR LL+ + + +A FN + L+ ++V D
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA----FNLSCKILLTTRFKQVTDF-- 280
Query: 248 DPLLPSQCYPEISPCMYREIMNDIPLKLKKPKYTGDARKQLSKYAE-AAKKLIESRNANS 306
L + IS ++ + L + + L KY + + L
Sbjct: 281 ---LSAATTTHIS-------LDHHSMTLTPDE----VKSLLLKYLDCRPQDLPRE----- 321
Query: 307 ESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHLTETVKDSVEKICLKIQH 366
T + + D ++ K LT ++ S+
Sbjct: 322 ---------VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN-------V 365
Query: 367 LSTEHAKK------IRDKNSDLLTANGIQEPPPPPSTLNSRKVWCY-----PIQFSTPSC 415
L +K + ++ + P L+ +W +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHI-----------PTILLS--LIWFDVIKSDVMVVVNKLH 412
Query: 416 RMPSIEYHPDKE-------QIMLRFQNDTVTVNSLHFQKLEHLYRYSCFDDKKFELFLPR 468
+ +E P + + L+ + + +LH ++H FD +L P
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEY--ALHRSIVDHYNIPKTFD--SDDLIPPY 468
Query: 469 VWCLLKRYT-TFLGQ--VTAQQDSGLSTWPRNSCFDDKKFELFLPRVWCLLKRYTTFLGQ 525
L +Y + +G + ++ LF V+ + FL Q
Sbjct: 469 ----LDQYFYSHIGHHLKNIEH--------------PERMTLF-RMVFLDFR----FLEQ 505
Query: 526 VTAQSGKTQASLPGPVFECLNKHFGVTFECFASPLNCY--FRQYCSMFPDTDSYF 578
K +H + S LN + Y D D +
Sbjct: 506 ------KI-------------RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Score = 48.3 bits (114), Expect = 8e-06
Identities = 83/515 (16%), Positives = 150/515 (29%), Gaps = 135/515 (26%)
Query: 264 YREIMNDIPLKLKKP---KYTGDARKQLSKYAEAAKKLIESRNANSESRKVVKWNAEDTF 320
Y++I++ K D K + E +I S++A S + ++
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI-DHIIMSKDAVSGTLRL--------- 67
Query: 321 LWLRKTVGA-TYDDFQE---RLNH------LKTQC-QPHL-TETVKDSVEKICLKIQHLS 368
W + F E R+N+ +KT+ QP + T + +++ Q +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 369 ------TEHAKKIRDKNSDLLTANGIQEPPPPPSTLN----SRKVW-----C--YPIQFS 411
+ K+R +L A + ++ S K W C Y +Q
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNV--------LIDGVLGSGKTWVALDVCLSYKVQ-- 177
Query: 412 TPSCRMP------SIEYHPDKEQIMLRFQNDTVTVNSLHFQKLEHL----YRYSCFDDKK 461
C+M +++ E ++ Q ++ + +H R +
Sbjct: 178 ---CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 462 FELFLPRVW--CLLKRYTTFLGQVTAQQDSGLSTWPRNSCFDDKKFELFLPRVWC--LLK 517
L + + CLL L V + K + F C LL
Sbjct: 235 RRLLKSKPYENCLL-----VLLNV----------Q------NAKAWNAFNLS--CKILL- 270
Query: 518 RYTTFLGQVTAQ-SGKTQASLPGPVFECLNKHFGVTF------ECFASPLNCYF----RQ 566
TT QVT S T + H +T L+C R+
Sbjct: 271 --TTRFKQVTDFLSAATTTHISL-------DHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 567 YCSMFPDTDSYFGSRGPILDLKAVSGSFQAHPPYCEELMEATVGHFEHLLADSPEPL--S 624
+ P S I D A +++ H C++L L +
Sbjct: 322 VLTTNPRRLSIIAES--IRDGLATWDNWK-HV-NCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 625 FIVFVPDFRDPS----------PSALVKLEASHFKRKQVVVP-AFEHEFRI-GVQPFVTN 672
VF P P+ + V + + + +V E I +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-LELK 436
Query: 673 KTDLNVKSMHGTLVVWLQNSAGFAKWT---PTEDK 704
N ++H ++V F P D+
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Score = 42.5 bits (99), Expect = 5e-04
Identities = 49/359 (13%), Positives = 100/359 (27%), Gaps = 106/359 (29%)
Query: 53 NPMMEHGNPMQQGPMTPHQGVQMGGSYIDH---ELPPELIQQGWRK---FWSKRENRPYY 106
+ ++H +TP + + Y+D +LP E++ R+ +
Sbjct: 288 HISLDH----HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 107 WNRASGESLWDMPQGSGFDPIGDPLGICAGPPPPHTPNMNMPPQPMKRRASEGMAMGAPL 166
W+ W D + + + P ++ + +++
Sbjct: 344 WDN------WKHVN---CDKLTTIIESSLN---------VLEPAEYRKMF-DRLSV---F 381
Query: 167 PKKFILSGPWDLEIPTNVIILERAPTSMPQPHPEI---ELFRCNLTNK--------LRHL 215
P IPT + L + + + +L + +L K + +
Sbjct: 382 PP--------SAHIPTIL--LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 216 LQDMCHSREGIDAPHESFNRWLMERKVIDTGSDPLLPSQCYPEISPC---MYREIMNDIP 272
++ E A H R ++D + + ++ P Y + I
Sbjct: 432 YLELKVKLENEYALH---------RSIVD--HYNIPKTFDSDDLIPPYLDQY--FYSHIG 478
Query: 273 LKLKKPKYTGDA---RKQLSKYAEAAKKLIESRNANSESRKVVKWNAE----DTFLWLRK 325
LK ++ R + +K+ A WNA +T L+
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA---------WNASGSILNTLQQLKF 529
Query: 326 TVGATYDDFQERLNHLKTQCQPHLTETVKDSVEKICLKIQHLSTEHAKK-IRDKNSDLL 383
Y + N P V I + + I K +DLL
Sbjct: 530 -----YKPYICD-ND------PKYERLVNA--------ILDFLPKIEENLICSKYTDLL 568
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.72.1.1
Length = 50
Score = 38.5 bits (89), Expect = 2e-04
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 90 QQGWRKFWSKRENRPYYWNRASGESLWDMPQG 121
W + + E YY++ SG S W+ P+G
Sbjct: 6 SGRWVEGITS-EGYHYYYDLISGASQWEKPEG 36
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal
transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB:
2jup_W 2rly_W 2rm0_W 2nnt_A
Length = 37
Score = 33.9 bits (78), Expect = 0.006
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 93 WRKFWSKRENRPYYWNRASGESLWDMPQ 120
W ++ + + + YY+N + ES W+ PQ
Sbjct: 8 WTEYKTA-DGKTYYYNNRTLESTWEKPQ 34
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant
(R14A), oncogenic transformation, small molecule cycle,
rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo
sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A*
2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A*
3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A*
1f8a_B* ...
Length = 166
Score = 36.7 bits (85), Expect = 0.010
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 84 LPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFD 125
LPP GW K S+ R YY+N + S W+ P G+
Sbjct: 10 LPP-----GWEKAMSRSSGRVYYFNHITNASQWERPSGNSSS 46
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear
protein, mRNA splicing, ribonucleoprotein; NMR
{Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Length = 75
Score = 34.1 bits (78), Expect = 0.014
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 82 HELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMP 119
+ L + GW+ + + + YY+N + E+ W +P
Sbjct: 34 SQEELLLRENGWKAAKTA-DGKVYYYNPTTRETSWTIP 70
Score = 30.6 bits (69), Expect = 0.24
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 97 WSKR---ENRPYYWNRASGESLWDMPQG 121
W + R YY+N + +S W+ P+
Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKPKE 31
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich
peptides, protein-protein interactions, structural
protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A
1zr7_A 2dyf_A
Length = 41
Score = 32.9 bits (75), Expect = 0.017
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 90 QQGWRKFWSKRENRPYYWNRASGESLWDMPQ 120
+ W + S + R YY+N + +S W+ P
Sbjct: 11 KSMWTEHKSP-DGRTYYYNTETKQSTWEKPD 40
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein
binding; NMR {Homo sapiens}
Length = 92
Score = 33.9 bits (77), Expect = 0.030
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 82 HELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQG 121
L + W+++ S + YY+N + ES W P+
Sbjct: 46 TPAEQLLSKCPWKEYKSD-SGKTYYYNSQTKESRWAKPKE 84
Score = 31.9 bits (72), Expect = 0.14
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 85 PPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQG 121
+ W + S + R YY+N + +S W+ P
Sbjct: 8 TASGAKSMWTEHKSP-DGRTYYYNTETKQSTWEKPDD 43
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain,
ordered linker; 1.60A {Candida albicans}
Length = 177
Score = 35.2 bits (81), Expect = 0.033
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122
LPP W S+ N+ Y+ N+++ ES WD P G+
Sbjct: 5 STGLPP-----NWTIRVSRSHNKEYFLNQSTNESSWDPPYGT 41
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 40
Score = 31.5 bits (72), Expect = 0.047
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 77 GSYIDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122
GS LPP GW+ + S + R YY N + E+ W+ P S
Sbjct: 1 GSSGSSGLPP-----GWQSYLSP-QGRRYYVNTTTNETTWERPSSS 40
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3;
Fe65-like protein 2, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Length = 39
Score = 31.5 bits (71), Expect = 0.055
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 76 GGSYIDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQ 120
G S LPP GWRK YYW+ SG + W P
Sbjct: 1 GSSGSSGGLPP-----GWRK--IHDAAGTYYWHVPSGSTQWQRPT 38
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21,
WBP4, metal- binding, mRNA processing, mRNA splicing,
nucleus, polymorphism; NMR {Homo sapiens}
Length = 75
Score = 32.7 bits (74), Expect = 0.057
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 82 HELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQ 120
+L ++ W + S+ + YY+N +GES W+ P
Sbjct: 37 GDLKKTAVKTVWVEGLSE-DGFTYYYNTETGESRWEKPD 74
Score = 29.6 bits (66), Expect = 0.67
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 90 QQGWRKFWSKRENRPYYWNRASGESLWDMPQG 121
+ W + + E YY++ SG S W+ P+G
Sbjct: 4 KGRWVEGITS-EGYHYYYDLISGASQWEKPEG 34
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.22.1.1
Length = 40
Score = 31.3 bits (71), Expect = 0.062
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 90 QQGWRKFWSKRENRPYYWNRASGESLWDMPQG 121
++ W + + + + YY+N + ES W P G
Sbjct: 9 EEIWVENKTP-DGKVYYYNARTRESAWTKPDG 39
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B
member 1; triple-stranded beta-sheet; NMR {Homo sapiens}
SCOP: b.72.1.1
Length = 55
Score = 29.7 bits (66), Expect = 0.39
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS 122
D +LP GW + + + YYW+ +G + W+ P +
Sbjct: 17 DSDLPA-----GWMR--VQDTSGTYYWHIPTGTTQWEPPGRA 51
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo
sapiens} PDB: 3tad_A
Length = 334
Score = 32.2 bits (72), Expect = 0.62
Identities = 22/159 (13%), Positives = 44/159 (27%), Gaps = 14/159 (8%)
Query: 292 AEAAKKLIESRNANSESRK----VVKWNAEDTFLWLRKTVG--ATYDDFQERLNHLKTQC 345
AE ++L + E+R+ +W+ WL +G A Y N
Sbjct: 13 AEKDRRLKKKHELLEEARRKGLPFAQWDGPTVVAWLELWLGMPAWYVAACRA-NVKSGAI 71
Query: 346 QPHLTETVKDSVEKICLKIQHLSTEHAKKIRDKNSDLLTANGIQEPPPPPSTLNSRKVWC 405
L++T + +I + + I++ S PP T +
Sbjct: 72 MSALSDT--EIQREIGISNPLHRLKLRLAIQEMVS-----LTSPSAPPTSRTPSGNVWVT 124
Query: 406 YPIQFSTPSCRMPSIEYHPDKEQIMLRFQNDTVTVNSLH 444
+ + + Q + Q +
Sbjct: 125 HEEMENLAAQAKTKESEEGSWAQCPVFLQTLAYGDMNHE 163
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 31.5 bits (71), Expect = 0.80
Identities = 27/146 (18%), Positives = 40/146 (27%), Gaps = 6/146 (4%)
Query: 11 PAPTTSWDSMSVPQGPPIPITHENIQQVMVPVPIKMQPPPNLNPMMEHGNPMQQGPMTPH 70
P T + + P + + Q P L + Q MTP
Sbjct: 86 PPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
Query: 71 QGVQMGGSYIDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGDP 130
+ + I ++ R P R + P P+G P
Sbjct: 146 GRGTVAAA---AAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPP 202
Query: 131 LGICAG---PPPPHTPNMNMPPQPMK 153
+GI G P P M PP M+
Sbjct: 203 MGIPPGRGTPMGMPPPGMRPPPPGMR 228
Score = 28.5 bits (63), Expect = 8.0
Identities = 18/80 (22%), Positives = 25/80 (31%)
Query: 118 MPQGSGFDPIGDPLGICAGPPPPHTPNMNMPPQPMKRRASEGMAMGAPLPKKFILSGPWD 177
+G+ AG P + P PP PM R A MG P + + P
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG 204
Query: 178 LEIPTNVIILERAPTSMPQP 197
+ + P P P
Sbjct: 205 IPPGRGTPMGMPPPGMRPPP 224
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A*
1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A*
2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Length = 540
Score = 31.3 bits (71), Expect = 1.3
Identities = 8/57 (14%), Positives = 21/57 (36%)
Query: 57 EHGNPMQQGPMTPHQGVQMGGSYIDHELPPELIQQGWRKFWSKRENRPYYWNRASGE 113
++ P P +G G ++ + + W+ + PY + ++G+
Sbjct: 432 QNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD 488
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding
protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2
PDB: 1pk1_A
Length = 89
Score = 29.1 bits (65), Expect = 1.4
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 12/83 (14%)
Query: 299 IESRNANSESRK-VVKWNAEDTFLWLRKTVG-ATY-DDFQERLNHLKTQCQPHLTETVKD 355
+E++ N R + W+ +D ++R+ G Y DDF + + Q L E
Sbjct: 1 METKRVNGTDRPPISSWSVDDVSNFIRELPGCQDYVDDFIQ--QEIDGQALLRLKEK--H 56
Query: 356 SVEKICLKIQHLSTEHAKKIRDK 378
V + +K+ A KI K
Sbjct: 57 LVNAMGMKLG-----PALKIVAK 74
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 31.1 bits (71), Expect = 1.4
Identities = 10/76 (13%), Positives = 22/76 (28%), Gaps = 4/76 (5%)
Query: 276 KKPKYTGDARKQLSKYAEAAKKLIESRNA---NSESRKVVKWNAEDTFLWLRKT-VGATY 331
K T D + L +Y + +E A + + ++ WL +
Sbjct: 544 KLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIK 603
Query: 332 DDFQERLNHLKTQCQP 347
+ + L +
Sbjct: 604 AKYIAKYEELASLGNI 619
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus
norvegicus} SCOP: a.8.4.1
Length = 113
Score = 29.2 bits (65), Expect = 1.8
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 283 DARKQLSKYAEAAKKLIE----SRNANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERL 338
L YA K +E N E ++ + + WL K A ++F+ +
Sbjct: 4 RGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQ 63
Query: 339 NHLKTQCQP 347
L+ C P
Sbjct: 64 KELEKVCNP 72
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 2.3
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 284 ARKQLSKYAEAAKKLIES--RNANSESRKVVKWN--AEDTFL 321
++ ++ E AKK +E + + + K N A+ F
Sbjct: 105 SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFY 146
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 30.6 bits (68), Expect = 2.3
Identities = 29/242 (11%), Positives = 47/242 (19%), Gaps = 50/242 (20%)
Query: 11 PAPTTSWDSMSVPQGPPIPITHENIQQVMVPVPIKM-QPPPNLNPMMEHGNPMQQGPMTP 69
P + + P P +M PP P M +
Sbjct: 10 PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69
Query: 70 HQGVQMGGSYIDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGD 129
HQ + +
Sbjct: 70 HQQIDQAT-----------------------------------------TSMNDMHLHNV 88
Query: 130 PLGICAGPPPPHTPNMNMPPQPMKRRASEGMAMGAPLPKKFILSGPWDLEIPTNVIILER 189
PL P P P +++ A G P P + P +++
Sbjct: 89 PLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELP 148
Query: 190 APTSMPQ-PHPEIELFRCNLTNKLRHLLQDMCHSREGIDAPHESFNRWLMERKVIDTGSD 248
P + P P L +L S D + N ++
Sbjct: 149 PPITDLTLPPPP-------LVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKL 201
Query: 249 PL 250
P
Sbjct: 202 PF 203
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70,
PSI-2, prote structure initiative; 2.40A {Homo sapiens}
PDB: 2lmg_A
Length = 113
Score = 28.7 bits (64), Expect = 2.7
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 283 DARKQLSKYAEAAKKLIE----SRNANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERL 338
A+ L YA K +E + +K V ++ WL A D+F+ +
Sbjct: 9 SAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKR 68
Query: 339 NHLKTQCQP 347
L+ C P
Sbjct: 69 KELEQVCNP 77
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW
domain, beta sheet, Fe65, protein binding; 1.33A {Homo
sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Length = 38
Score = 26.6 bits (58), Expect = 3.1
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
Query: 83 ELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMP 119
+LP GW + + + YYW+ +G + W+ P
Sbjct: 3 DLPA-----GWMR--VQDTSGTYYWHIPTGTTQWEPP 32
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain,
EF-SAM, STIM1, store operated calcium entry regulator,
SOCE; NMR {Homo sapiens}
Length = 150
Score = 28.9 bits (64), Expect = 3.4
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 307 ESRKVVKWNAEDTFLWLRKTVGATYDDFQE--RLNHLKTQCQPHLTETVKDSVEKICLKI 364
+S +V W ++ WL V ++E R L P L T ++ LK+
Sbjct: 74 KSSEVYNWTVDEVVQWLITYVE--LPQYEETFRKLQLSGHAMPRLAVT-NTTMTGTVLKM 130
Query: 365 QHLSTEHAKKIRDKNSD 381
S H +K++ K D
Sbjct: 131 TDRS--HRQKLQLKALD 145
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila
melanogaster} SCOP: b.72.1.1 b.72.1.1
Length = 88
Score = 27.5 bits (61), Expect = 4.4
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 83 ELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGDPLGICAGPPPP 140
LP GW K +NR Y+ N + + W+ P+ G + GP PP
Sbjct: 12 PLPD-----GWEKKIQS-DNRVYFVNHKNRTTQWEDPRTQGQEVSLIN----EGPLPP 59
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free
protein synthesis, protein regulation, lipid metabolism,
structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Length = 97
Score = 27.4 bits (60), Expect = 5.0
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 304 ANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLN-----HLKTQ--CQPHLTETVKDS 356
+ ++VV W+ + WL + Y + E +L + +P L D+
Sbjct: 10 SARTMKEVVYWSPKKVADWLLENAMPEYCEPLEHFTGQDLINLTQEDFKKPPLYRVSSDN 69
Query: 357 VEKICLKIQHLSTEHAKKIRDKN 379
+++ I+ L EH + +
Sbjct: 70 GQRLLDMIETLKMEHHMEAHKNS 92
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted
(beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL;
2.90A {Streptococcus pneumoniae}
Length = 1531
Score = 29.5 bits (65), Expect = 5.4
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 73 VQMGGSYIDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQG 121
+Q G +Y+ P G K S + + YY+N +G + W +P
Sbjct: 921 IQDGSAYL---TPWNWDANG--KKLSTDKEKMYYFNTQAGATTWTLPSD 964
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular
binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A*
2laz_A*
Length = 90
Score = 27.1 bits (60), Expect = 6.1
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 83 ELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGDPLGICAGPPPP 140
+LP G+ + ++ + + Y+ + +G S W P+ + + GP PP
Sbjct: 9 DLPE-----GYEQRTTQ-QGQVYFLHTQTGVSTWHDPRVP--RDLSNINCEELGPLPP 58
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 28.1 bits (62), Expect = 9.1
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 82 HELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGF 124
+Q W + S PYY N + + WD P+ +
Sbjct: 5 QHFLSTSVQGPWERAISPN-KVPYYINHETQTTCWDHPKMTEL 46
>1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription
factor, NF-KB, dimerization domain, intertwined folding;
1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A
3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B
Length = 106
Score = 27.1 bits (60), Expect = 9.3
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 406 YPIQFSTPSCRMPSIEYHPDKEQIMLRFQNDTVTVNSLHFQ 446
+ I F TP + +I P + LR ++D T F
Sbjct: 63 FAICFKTPKYKDVNIT-KPASVFVQLRRKSDLETSEPKPFL 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.433
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,659,043
Number of extensions: 707887
Number of successful extensions: 1630
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1547
Number of HSP's successfully gapped: 58
Length of query: 744
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 643
Effective length of database: 3,881,772
Effective search space: 2495979396
Effective search space used: 2495979396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.8 bits)