RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2928
(744 letters)
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 34
Score = 40.0 bits (94), Expect = 2e-05
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 83 ELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQG 121
+LPP GW K S+ R YY+N + S W+ P G
Sbjct: 1 KLPP-----GWEKRMSRSSGRVYYFNHITNASQWERPSG 34
>d1edqa3 d.26.3.1 (A:444-516) Chitinase A {Serratia marcescens
[TaxId: 615]}
Length = 73
Score = 39.6 bits (92), Expect = 7e-05
Identities = 8/56 (14%), Positives = 20/56 (35%)
Query: 58 HGNPMQQGPMTPHQGVQMGGSYIDHELPPELIQQGWRKFWSKRENRPYYWNRASGE 113
+ P P +G G ++ + + W+ + PY + ++G+
Sbjct: 13 NNIPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD 68
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 37.1 bits (86), Expect = 2e-04
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 93 WRKFWSKRENRPYYWNRASGESLWDMPQG 121
W + + E YY++ SG S W+ P+G
Sbjct: 3 WVEGITS-EGYHYYYDLISGASQWEKPEG 30
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 46
Score = 37.1 bits (86), Expect = 2e-04
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 88 LIQQGWRKFWSKRENRPYYWNRASGESLWDMPQ 120
L + GW+ + + + YY+N + E+ W +P
Sbjct: 11 LRENGWKAAKTA-DGKVYYYNPTTRETSWTIPA 42
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain
{Domestic mouse (Mus musculus) [TaxId: 10090]}
Length = 37
Score = 34.7 bits (80), Expect = 0.001
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 92 GWRKFWSKRENRPYYWNRASGESLWDMPQ 120
W ++ + + + YY+N + ES W+ PQ
Sbjct: 7 EWTEYKTA-DGKTYYYNNRTLESTWEKPQ 34
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein
HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 33.9 bits (78), Expect = 0.002
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 93 WRKFWSKRENRPYYWNRASGESLWDMP 119
W + S + R YY+N + +S W+ P
Sbjct: 3 WTEHKSP-DGRTYYYNTETKQSTWEKP 28
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 29
Score = 33.9 bits (78), Expect = 0.002
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 93 WRKFWSKRENRPYYWNRASGESLWDMP 119
W++ R YY+N + +S W+ P
Sbjct: 4 WKEAKDA-SGRIYYYNTLTKKSTWEKP 29
>d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 31.5 bits (71), Expect = 0.055
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 308 SRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHLTETVKDSVEKICLKIQHL 367
++VV W+ + WL ++ E L H Q +LT+ + +K L
Sbjct: 8 MKEVVYWSPKKVADWLL---ENAMPEYCEPLEHFTGQDLINLTQ---EDFKKPPLYRV-- 59
Query: 368 STEHAKKIRDKNSDLLTANGIQEPP 392
S+++ +++ D L + ++
Sbjct: 60 SSDNGQRLLDMIETLKMEHHMEAHK 84
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 84
Score = 30.9 bits (70), Expect = 0.11
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 284 ARKQLSKYAEAAKKLIESRNANS----ESRKVVKWNAEDTFLWLRKTVGATYDDFQERLN 339
L YA K +E E ++ + + WL K A ++F+ +
Sbjct: 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQK 61
Query: 340 HLKTQCQP 347
L+ C P
Sbjct: 62 ELEKVCNP 69
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 50
Score = 28.6 bits (64), Expect = 0.31
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 83 ELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMP 119
LPP GW + + R ++ N ++ W+ P
Sbjct: 11 PLPP-----GWEERTH-TDGRVFFINHNIKKTQWEDP 41
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 45
Score = 28.1 bits (63), Expect = 0.42
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 83 ELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQ 120
LP GW K +NR Y+ N + + W+ P+
Sbjct: 12 PLPD-----GWEKKIQ-SDNRVYFVNHKNRTTQWEDPR 43
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 46
Score = 26.6 bits (59), Expect = 1.1
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 6/40 (15%)
Query: 81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQ 120
D LP GW + + Y+ N + W P+
Sbjct: 6 DVPLPA-----GWEMAKTS-SGQRYFKNHIDQTTTWQDPR 39
>d1gpja1 a.151.1.1 (A:303-404) Glutamyl tRNA-reductase dimerization
domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 102
Score = 27.9 bits (62), Expect = 1.3
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 187 LERAPTSMPQPHPE--IELFRCNLTNKLRHLLQDMCH--SREGIDAPHESFNR 235
LERA + PE ++ F T +L ++L E A + R
Sbjct: 44 LERALRRLKTGDPENVLQDFAEAYTKRLINVLTSAIMELPDEYRRAASRALRR 96
>d1goia3 d.26.3.1 (A:292-379) Chitinase B {Serratia marcescens
[TaxId: 615]}
Length = 88
Score = 27.3 bits (60), Expect = 2.2
Identities = 7/68 (10%), Positives = 17/68 (25%), Gaps = 1/68 (1%)
Query: 47 QPPPNLNPMMEHGNPMQQGPMTPHQGVQMGGSYIDHELPPELI-QQGWRKFWSKRENRPY 105
+ +L L G+++ W+ + PY
Sbjct: 17 SSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPY 76
Query: 106 YWNRASGE 113
++ +G
Sbjct: 77 LYHAQNGL 84
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 114
Score = 27.7 bits (61), Expect = 2.2
Identities = 12/88 (13%), Positives = 22/88 (25%), Gaps = 8/88 (9%)
Query: 303 NANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHLT--------ETVK 354
+AN R+ A W++ + + L+ Q +
Sbjct: 1 HANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNI 60
Query: 355 DSVEKICLKIQHLSTEHAKKIRDKNSDL 382
D +E IQ K +
Sbjct: 61 DKLEGDHQLIQEALVFDNKHTNYTMEHI 88
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 105
Score = 27.5 bits (61), Expect = 2.4
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 474 KRYTTFLGQVTAQQDSGLSTWPRNSCFDDKKFELFLPRVWCL 515
R+ T+ + D+ L + R+ + + + F R +
Sbjct: 9 TRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFFDRDPDI 50
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain
{fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 33
Score = 24.9 bits (55), Expect = 4.3
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 84 LPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMP 119
LPP GW ++ ++ + + + ++ P
Sbjct: 3 LPP-----GWEIRYTA-AGERFFVDHNTRRTTFEDP 32
>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal
domain {Moorella thermoacetica [TaxId: 1525]}
Length = 149
Score = 27.0 bits (59), Expect = 5.4
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 75 MGGSYIDHELPPELIQQGWRKFWSKRENRP------YYWNRASGESLWDMPQGSGFDPIG 128
+G I++++ P + + +N+ Y W + + L + + + + I
Sbjct: 59 VGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIA 118
Query: 129 DPLGICAGPP 138
+P P
Sbjct: 119 EPGPTVQWVP 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.433
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,955,080
Number of extensions: 147688
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 22
Length of query: 744
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 652
Effective length of database: 1,144,436
Effective search space: 746172272
Effective search space used: 746172272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)