BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2930
         (293 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XMO|A Chain A, The Crystal Structure Of Lmo2642
 pdb|2XMO|B Chain B, The Crystal Structure Of Lmo2642
          Length = 443

 Score = 33.5 bits (75), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 17/108 (15%)

Query: 8   ESINNIKAIFIADTHLLGPF---RGHWFDK---------LRREWQMYKTFQTAVALHQPE 55
           E   N+  +   D H   P     G  F+K         L    ++   F   V   + +
Sbjct: 35  EKDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTD 94

Query: 56  HIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103
            + + GDL + G+    E+    + +        +GT++ VVPGNHD+
Sbjct: 95  VLIISGDLTNNGEKTSHEELAKKLTQV-----EKNGTQVFVVPGNHDI 137


>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47
          Length = 416

 Score = 28.1 bits (61), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/86 (22%), Positives = 35/86 (40%)

Query: 29  GHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFST 88
           GH   K    W  Y    T  A+  P+++FV+ +  +  Q +GG +  N       +   
Sbjct: 4   GHEVLKPYDGWAAYGEGTTGGAMASPQNVFVVTNRTELIQALGGNNHTNQYNSVPKIIYV 63

Query: 89  PDGTELHVVPGNHDMGFHYRLHPYLN 114
               +L+V   N  +G  +   P+ +
Sbjct: 64  KGTIDLNVDDNNQPVGPDFYKDPHFD 89


>pdb|1HC1|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HCY|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HCY|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HCY|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HCY|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HCY|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HCY|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HC1|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HC1|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HC1|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HC1|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HC1|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
          Length = 657

 Score = 27.7 bits (60), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 18/114 (15%)

Query: 48  AVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRF-----------YSLFSTPDGTELHV 96
            + + QP+ I +LGD+++  +Y     +   +              +  F+ P G   H 
Sbjct: 312 TIDIRQPKGIELLGDIIESSKYSSNVQYYGSLHNTAHVMLGRQGDPHGKFNLPPGVMEHF 371

Query: 97  VPGNHDMGFHYRLHPYLNDRFSR---AFNSSMVKLLSIKGSYFVLINSMALEGD 147
                D  F +RLH Y+++ F +   +F       L   G   +++N +A++G+
Sbjct: 372 ETATRDPSF-FRLHKYMDNIFKKHTDSFPPYTHDNLEFSG---MVVNGVAIDGE 421


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,037,244
Number of Sequences: 62578
Number of extensions: 441541
Number of successful extensions: 774
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 7
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)