Query psy2930
Match_columns 293
No_of_seqs 130 out of 1339
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 21:14:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08163 MPP_Cdc1 Saccharomyces 100.0 4.3E-37 9.3E-42 261.5 23.9 242 16-273 1-257 (257)
2 cd07395 MPP_CSTP1 Homo sapiens 100.0 1.1E-31 2.4E-36 230.9 26.9 249 11-290 3-257 (262)
3 cd07396 MPP_Nbla03831 Homo sap 100.0 1.3E-29 2.9E-34 218.3 21.7 236 13-290 1-266 (267)
4 PRK11148 cyclic 3',5'-adenosin 100.0 9E-29 2E-33 214.1 24.3 230 8-287 10-252 (275)
5 cd07402 MPP_GpdQ Enterobacter 100.0 5.1E-28 1.1E-32 205.6 20.5 220 14-287 1-239 (240)
6 KOG3662|consensus 100.0 1.8E-27 3.9E-32 208.6 14.4 275 1-278 34-325 (410)
7 cd07378 MPP_ACP5 Homo sapiens 99.9 2.5E-25 5.3E-30 193.1 20.4 235 13-291 1-271 (277)
8 cd00842 MPP_ASMase acid sphing 99.9 2.8E-25 6E-30 194.5 19.7 208 38-279 51-296 (296)
9 cd07401 MPP_TMEM62_N Homo sapi 99.9 2E-24 4.4E-29 184.6 21.5 196 15-252 2-212 (256)
10 cd07399 MPP_YvnB Bacillus subt 99.9 4.6E-24 1E-28 177.7 20.4 202 13-292 1-208 (214)
11 cd00839 MPP_PAPs purple acid p 99.9 1.4E-24 3.1E-29 189.9 18.1 236 10-290 2-276 (294)
12 cd08166 MPP_Cdc1_like_1 unchar 99.9 9.1E-24 2E-28 170.1 17.0 165 16-273 1-195 (195)
13 cd08165 MPP_MPPE1 human MPPE1 99.9 3E-23 6.4E-28 164.1 15.9 156 16-273 1-156 (156)
14 cd07393 MPP_DR1119 Deinococcus 99.9 3.2E-22 7E-27 168.8 20.5 208 15-273 1-231 (232)
15 PLN02533 probable purple acid 99.9 3.3E-22 7.2E-27 182.0 20.5 208 10-269 137-359 (427)
16 cd07384 MPP_Cdc1_like Saccharo 99.9 4E-22 8.7E-27 159.9 15.8 157 16-273 1-171 (171)
17 TIGR03729 acc_ester putative p 99.9 5.4E-21 1.2E-25 162.2 18.4 208 14-266 1-236 (239)
18 PTZ00422 glideosome-associated 99.9 1.3E-20 2.9E-25 166.5 20.9 241 8-291 22-312 (394)
19 cd07392 MPP_PAE1087 Pyrobaculu 99.9 2.2E-20 4.9E-25 152.5 17.7 187 15-265 1-187 (188)
20 cd07388 MPP_Tt1561 Thermus the 99.9 2.9E-19 6.3E-24 148.4 23.8 200 11-287 3-220 (224)
21 cd07383 MPP_Dcr2 Saccharomyces 99.8 4.5E-20 9.7E-25 152.3 16.5 175 12-252 2-178 (199)
22 TIGR03767 P_acnes_RR metalloph 99.8 6.6E-19 1.4E-23 158.1 25.0 130 126-285 293-431 (496)
23 COG1409 Icc Predicted phosphoh 99.8 1E-18 2.2E-23 152.8 21.7 188 13-251 1-194 (301)
24 KOG1432|consensus 99.8 1E-18 2.2E-23 148.2 20.4 260 8-290 49-355 (379)
25 KOG1378|consensus 99.8 5.3E-18 1.1E-22 150.4 17.4 195 8-254 143-348 (452)
26 COG2129 Predicted phosphoester 99.8 6.5E-17 1.4E-21 130.8 22.1 215 11-289 2-220 (226)
27 cd07400 MPP_YydB Bacillus subt 99.8 5.7E-18 1.2E-22 132.5 15.4 142 15-267 1-144 (144)
28 cd08164 MPP_Ted1 Saccharomyces 99.8 2.2E-18 4.7E-23 138.8 12.9 90 16-106 1-113 (193)
29 PF00149 Metallophos: Calcineu 99.8 2E-19 4.3E-24 144.0 7.0 192 13-250 1-200 (200)
30 cd00840 MPP_Mre11_N Mre11 nucl 99.8 1.6E-17 3.4E-22 139.4 16.6 89 14-105 1-90 (223)
31 cd07404 MPP_MS158 Microscilla 99.8 7.7E-18 1.7E-22 135.0 12.2 163 15-266 1-163 (166)
32 TIGR03768 RPA4764 metallophosp 99.8 3.6E-16 7.8E-21 139.2 22.9 146 126-292 294-458 (492)
33 PRK11340 phosphodiesterase Yae 99.8 3.1E-17 6.6E-22 141.5 15.2 83 7-105 44-126 (271)
34 PHA02546 47 endonuclease subun 99.7 7.7E-16 1.7E-20 136.9 22.7 89 13-105 1-90 (340)
35 cd07385 MPP_YkuE_C Bacillus su 99.7 1.8E-16 3.9E-21 133.1 13.9 77 12-105 1-77 (223)
36 PF12850 Metallophos_2: Calcin 99.7 1.4E-16 3.1E-21 126.0 11.8 155 13-286 1-156 (156)
37 KOG2679|consensus 99.7 4.6E-16 1E-20 128.0 14.6 241 8-291 39-313 (336)
38 PRK05340 UDP-2,3-diacylglucosa 99.7 6.7E-15 1.5E-19 125.0 21.4 226 13-290 1-235 (241)
39 PF14582 Metallophos_3: Metall 99.7 2.9E-14 6.3E-19 115.2 19.1 211 12-289 5-251 (255)
40 COG1768 Predicted phosphohydro 99.6 5.3E-15 1.1E-19 114.6 13.9 203 13-266 1-218 (230)
41 TIGR00583 mre11 DNA repair pro 99.6 5.3E-14 1.1E-18 126.6 20.0 92 11-105 2-124 (405)
42 KOG3770|consensus 99.6 1.4E-14 3.1E-19 131.9 16.2 242 8-285 134-444 (577)
43 TIGR01854 lipid_A_lpxH UDP-2,3 99.6 8.2E-14 1.8E-18 117.5 19.0 103 16-139 2-111 (231)
44 cd00841 MPP_YfcE Escherichia c 99.6 2.3E-14 5E-19 113.5 14.1 58 232-292 96-154 (155)
45 TIGR00040 yfcE phosphoesterase 99.6 1.9E-14 4E-19 114.4 13.3 56 232-289 100-156 (158)
46 cd07397 MPP_DevT Myxococcus xa 99.6 1.5E-13 3.3E-18 114.5 19.0 65 13-106 1-65 (238)
47 cd07394 MPP_Vps29 Homo sapiens 99.6 1.7E-13 3.6E-18 110.7 18.2 59 232-292 100-163 (178)
48 PRK10966 exonuclease subunit S 99.6 3.3E-13 7.2E-18 122.4 20.0 87 13-104 1-87 (407)
49 cd07379 MPP_239FB Homo sapiens 99.6 1.2E-13 2.7E-18 106.7 13.9 64 185-265 68-134 (135)
50 COG0420 SbcD DNA repair exonuc 99.5 3.6E-13 7.8E-18 122.4 16.1 88 13-104 1-88 (390)
51 PRK04036 DNA polymerase II sma 99.5 1.1E-12 2.3E-17 122.2 18.7 125 3-139 228-384 (504)
52 COG1408 Predicted phosphohydro 99.5 1.2E-13 2.5E-18 119.0 11.1 84 4-105 36-119 (284)
53 TIGR00619 sbcd exonuclease Sbc 99.5 6.7E-13 1.4E-17 113.3 14.7 87 13-104 1-88 (253)
54 COG2908 Uncharacterized protei 99.5 2.7E-14 5.9E-19 116.9 5.7 205 16-269 1-216 (237)
55 PRK09453 phosphodiesterase; Pr 99.5 1.4E-12 3.1E-17 106.0 15.7 44 238-283 118-162 (182)
56 COG0622 Predicted phosphoester 99.5 2.5E-12 5.5E-17 102.4 16.0 160 12-291 1-161 (172)
57 cd07398 MPP_YbbF-LpxH Escheric 99.5 4E-13 8.8E-18 112.2 10.2 106 16-139 1-113 (217)
58 cd07403 MPP_TTHA0053 Thermus t 99.4 5.1E-12 1.1E-16 96.7 13.0 48 226-283 79-129 (129)
59 cd00838 MPP_superfamily metall 99.4 3E-12 6.5E-17 97.3 11.3 69 16-102 1-69 (131)
60 cd07386 MPP_DNA_pol_II_small_a 99.4 3.7E-11 8E-16 102.2 15.7 115 16-139 2-135 (243)
61 cd00845 MPP_UshA_N_like Escher 99.2 7.6E-10 1.7E-14 94.7 17.9 83 13-106 1-84 (252)
62 COG1311 HYS2 Archaeal DNA poly 99.2 1.2E-09 2.5E-14 98.0 16.5 124 8-140 221-363 (481)
63 cd07406 MPP_CG11883_N Drosophi 99.2 5.9E-09 1.3E-13 89.4 19.8 83 13-106 1-85 (257)
64 cd07410 MPP_CpdB_N Escherichia 99.1 3.1E-09 6.7E-14 92.2 16.3 207 13-266 1-245 (277)
65 cd07390 MPP_AQ1575 Aquifex aeo 99.1 6.6E-11 1.4E-15 94.9 5.3 78 16-104 2-82 (168)
66 cd00844 MPP_Dbr1_N Dbr1 RNA la 99.1 1.5E-08 3.3E-13 86.5 18.7 174 52-252 27-230 (262)
67 cd07387 MPP_PolD2_C PolD2 (DNA 99.1 6.9E-09 1.5E-13 87.9 16.3 209 14-284 1-248 (257)
68 cd07425 MPP_Shelphs Shewanella 99.1 1.1E-09 2.3E-14 90.8 10.6 50 52-104 31-80 (208)
69 cd07408 MPP_SA0022_N Staphyloc 99.0 4.6E-08 1E-12 83.9 19.8 83 13-106 1-84 (257)
70 cd07391 MPP_PF1019 Pyrococcus 99.0 3.5E-10 7.6E-15 91.0 6.3 84 16-104 1-88 (172)
71 PF09423 PhoD: PhoD-like phosp 99.0 2.4E-08 5.1E-13 92.7 17.3 246 10-291 103-452 (453)
72 cd07411 MPP_SoxB_N Thermus the 98.8 9.3E-07 2E-11 76.1 20.5 86 13-106 1-97 (264)
73 PRK09419 bifunctional 2',3'-cy 98.8 3.9E-07 8.4E-12 93.5 19.6 81 9-106 657-738 (1163)
74 TIGR00024 SbcD_rel_arch putati 98.8 2E-08 4.3E-13 84.0 7.2 83 14-104 16-102 (225)
75 PRK09968 serine/threonine-spec 98.8 6E-08 1.3E-12 81.0 9.8 64 14-103 16-80 (218)
76 PRK11439 pphA serine/threonine 98.7 1.4E-07 3.1E-12 78.8 11.8 65 13-103 17-82 (218)
77 cd07409 MPP_CD73_N CD73 ecto-5 98.7 2.1E-06 4.5E-11 74.7 18.3 87 13-106 1-96 (281)
78 COG1407 Predicted ICC-like pho 98.7 5.4E-08 1.2E-12 80.4 7.9 88 13-105 20-111 (235)
79 cd07407 MPP_YHR202W_N Saccharo 98.7 4.7E-06 1E-10 72.2 20.0 89 11-105 4-98 (282)
80 COG4186 Predicted phosphoester 98.7 1.4E-06 3E-11 66.6 14.0 81 13-104 4-86 (186)
81 KOG2310|consensus 98.7 4E-06 8.6E-11 76.1 18.7 93 10-105 11-134 (646)
82 cd07412 MPP_YhcR_N Bacillus su 98.7 1.3E-05 2.7E-10 70.0 21.5 84 13-106 1-90 (288)
83 cd07405 MPP_UshA_N Escherichia 98.6 5.9E-06 1.3E-10 71.9 18.8 84 13-106 1-89 (285)
84 PHA02239 putative protein phos 98.5 3.1E-07 6.7E-12 77.4 7.8 70 13-103 1-72 (235)
85 cd08162 MPP_PhoA_N Synechococc 98.4 8.7E-06 1.9E-10 71.7 14.6 84 13-106 1-93 (313)
86 PRK00166 apaH diadenosine tetr 98.4 5.7E-07 1.2E-11 77.5 6.6 64 13-103 1-68 (275)
87 TIGR01530 nadN NAD pyrophospha 98.4 2.6E-05 5.6E-10 74.1 17.3 48 53-106 49-96 (550)
88 PRK09558 ushA bifunctional UDP 98.3 3E-05 6.5E-10 73.8 17.2 89 9-106 31-123 (551)
89 cd07423 MPP_PrpE Bacillus subt 98.3 2E-06 4.4E-11 72.7 7.0 42 54-103 38-79 (234)
90 COG0737 UshA 5'-nucleotidase/2 98.3 4.4E-05 9.6E-10 72.1 15.9 91 9-106 23-117 (517)
91 cd07382 MPP_DR1281 Deinococcus 98.2 2.3E-05 4.9E-10 66.8 12.5 72 14-106 1-72 (255)
92 TIGR01390 CycNucDiestase 2',3' 98.2 3.6E-05 7.8E-10 74.0 14.7 89 12-106 2-101 (626)
93 PRK11907 bifunctional 2',3'-cy 98.2 8.2E-05 1.8E-09 73.0 16.6 90 11-106 114-215 (814)
94 PRK09419 bifunctional 2',3'-cy 98.2 5.5E-05 1.2E-09 78.0 16.2 90 11-106 40-141 (1163)
95 PRK09420 cpdB bifunctional 2', 98.1 6.8E-05 1.5E-09 72.4 14.6 91 10-106 23-124 (649)
96 PRK09418 bifunctional 2',3'-cy 98.1 0.0002 4.4E-09 70.1 17.7 58 11-68 38-98 (780)
97 PRK13625 bis(5'-nucleosyl)-tet 98.1 8.2E-06 1.8E-10 69.4 6.8 42 54-103 37-78 (245)
98 cd07424 MPP_PrpA_PrpB PrpA and 98.0 1.1E-05 2.4E-10 66.9 6.2 65 14-104 2-67 (207)
99 TIGR00282 metallophosphoestera 98.0 7.6E-05 1.6E-09 63.8 11.4 73 13-106 1-73 (266)
100 cd07422 MPP_ApaH Escherichia c 98.0 1E-05 2.2E-10 69.0 6.1 42 53-104 26-67 (257)
101 cd07380 MPP_CWF19_N Schizosacc 98.0 6.1E-05 1.3E-09 58.8 9.4 28 225-252 97-124 (150)
102 cd07413 MPP_PA3087 Pseudomonas 98.0 2.2E-05 4.7E-10 65.8 7.0 43 53-103 33-75 (222)
103 TIGR00668 apaH bis(5'-nucleosy 97.9 1.7E-05 3.6E-10 68.0 5.9 64 13-103 1-68 (279)
104 cd07421 MPP_Rhilphs Rhilph pho 97.9 3.9E-05 8.4E-10 66.0 7.9 47 53-104 34-80 (304)
105 cd00144 MPP_PPP_family phospho 97.8 3.7E-05 8E-10 64.4 6.4 49 49-104 20-68 (225)
106 smart00156 PP2Ac Protein phosp 97.8 0.0015 3.3E-08 56.3 16.3 72 13-104 28-99 (271)
107 KOG3947|consensus 97.8 0.00065 1.4E-08 57.1 12.1 72 8-106 57-128 (305)
108 cd07416 MPP_PP2B PP2B, metallo 97.7 0.0063 1.4E-07 53.4 17.7 25 225-249 220-244 (305)
109 cd07417 MPP_PP5_C PP5, C-termi 97.6 0.0049 1.1E-07 54.3 16.5 26 225-250 231-256 (316)
110 cd07419 MPP_Bsu1_C Arabidopsis 97.5 0.011 2.5E-07 52.0 17.3 23 225-247 240-262 (311)
111 PF04042 DNA_pol_E_B: DNA poly 97.5 0.00011 2.3E-09 61.0 4.2 116 15-139 1-134 (209)
112 PTZ00244 serine/threonine-prot 97.5 0.0064 1.4E-07 53.0 15.2 26 225-250 222-247 (294)
113 cd07414 MPP_PP1_PPKL PP1, PPKL 97.5 0.0038 8.1E-08 54.5 13.5 26 225-250 220-245 (293)
114 cd07415 MPP_PP2A_PP4_PP6 PP2A, 97.4 0.014 3.1E-07 50.6 16.3 26 224-249 211-236 (285)
115 cd07418 MPP_PP7 PP7, metalloph 97.4 0.037 8.1E-07 49.8 18.6 24 224-247 270-293 (377)
116 PTZ00480 serine/threonine-prot 97.3 0.021 4.5E-07 50.3 16.0 27 224-250 228-254 (320)
117 cd07420 MPP_RdgC Drosophila me 97.2 0.089 1.9E-06 46.4 18.7 26 224-249 250-275 (321)
118 KOG2863|consensus 97.2 0.00043 9.3E-09 60.2 4.0 29 224-252 204-232 (456)
119 COG5555 Cytolysin, a secreted 97.1 0.0032 7E-08 53.3 8.4 212 55-289 128-367 (392)
120 COG3540 PhoD Phosphodiesterase 97.1 0.013 2.7E-07 53.3 12.4 162 90-269 231-445 (522)
121 cd07381 MPP_CapA CapA and rela 96.6 0.039 8.5E-07 46.7 11.3 21 233-253 202-222 (239)
122 cd07389 MPP_PhoD Bacillus subt 96.5 0.055 1.2E-06 45.3 11.9 93 50-145 26-169 (228)
123 COG1692 Calcineurin-like phosp 96.5 0.054 1.2E-06 45.2 11.1 70 13-103 1-70 (266)
124 smart00854 PGA_cap Bacterial c 96.4 0.051 1.1E-06 46.0 11.1 20 234-253 201-220 (239)
125 PTZ00239 serine/threonine prot 96.3 0.013 2.7E-07 51.4 6.6 26 225-250 213-238 (303)
126 PTZ00235 DNA polymerase epsilo 96.2 0.037 7.9E-07 47.7 9.1 92 8-105 23-123 (291)
127 PF09587 PGA_cap: Bacterial ca 96.2 0.31 6.8E-06 41.5 14.6 147 89-268 73-246 (250)
128 KOG3325|consensus 96.0 0.026 5.6E-07 43.2 6.2 59 229-289 98-162 (183)
129 KOG4419|consensus 95.7 0.21 4.6E-06 46.9 12.1 93 8-105 38-135 (602)
130 KOG3818|consensus 92.9 2 4.4E-05 39.1 11.3 122 8-139 278-406 (525)
131 PF13277 YmdB: YmdB-like prote 91.0 6.6 0.00014 33.3 11.8 87 41-142 15-113 (253)
132 PHA03008 hypothetical protein; 89.8 2.8 6E-05 33.9 8.1 43 186-250 162-204 (234)
133 KOG2476|consensus 89.6 14 0.0003 34.1 13.2 190 12-248 5-197 (528)
134 KOG2732|consensus 86.4 26 0.00055 31.9 13.5 200 13-269 176-413 (435)
135 PF06874 FBPase_2: Firmicute f 85.8 0.8 1.7E-05 43.5 3.4 58 37-105 168-225 (640)
136 KOG0374|consensus 82.5 2.3 5E-05 37.8 4.7 60 225-286 231-292 (331)
137 COG3855 Fbp Uncharacterized pr 80.2 2.7 5.8E-05 38.5 4.3 59 36-105 173-231 (648)
138 COG2248 Predicted hydrolase (m 78.2 8.6 0.00019 32.6 6.4 63 9-87 173-236 (304)
139 KOG0372|consensus 78.0 7.1 0.00015 32.9 5.8 44 55-104 71-114 (303)
140 PF02350 Epimerase_2: UDP-N-ac 74.8 6.5 0.00014 35.3 5.3 46 40-99 54-99 (346)
141 KOG0376|consensus 68.6 52 0.0011 30.6 9.5 62 227-290 387-450 (476)
142 cd07424 MPP_PrpA_PrpB PrpA and 66.7 6.4 0.00014 32.3 3.2 29 238-268 168-196 (207)
143 KOG0373|consensus 61.0 26 0.00057 29.1 5.5 43 56-104 75-117 (306)
144 KOG3325|consensus 54.7 49 0.0011 25.7 5.8 106 14-167 2-107 (183)
145 TIGR03568 NeuC_NnaA UDP-N-acet 52.0 62 0.0014 29.2 7.2 49 41-103 81-130 (365)
146 cd00886 MogA_MoaB MogA_MoaB fa 50.6 94 0.002 24.0 7.2 29 40-68 48-76 (152)
147 COG0381 WecB UDP-N-acetylgluco 49.1 46 0.00099 30.2 5.6 26 40-65 79-104 (383)
148 KOG0371|consensus 48.6 19 0.00041 30.7 2.9 46 52-103 84-130 (319)
149 PF05582 Peptidase_U57: YabG p 46.6 65 0.0014 27.9 5.9 25 38-62 139-163 (287)
150 TIGR01769 GGGP geranylgeranylg 44.9 91 0.002 25.7 6.4 49 45-103 16-65 (205)
151 TIGR02667 moaB_proteo molybden 44.6 1.3E+02 0.0028 23.7 7.2 29 40-68 50-78 (163)
152 KOG0375|consensus 42.9 59 0.0013 29.2 5.2 44 55-104 116-159 (517)
153 PF05582 Peptidase_U57: YabG p 42.6 22 0.00048 30.7 2.5 22 228-249 144-166 (287)
154 TIGR02855 spore_yabG sporulati 42.0 23 0.0005 30.4 2.5 22 228-249 143-165 (283)
155 cd00758 MoCF_BD MoCF_BD: molyb 40.0 36 0.00077 25.7 3.2 25 41-67 48-72 (133)
156 TIGR03413 GSH_gloB hydroxyacyl 39.3 63 0.0014 27.3 4.9 47 55-104 119-167 (248)
157 TIGR02707 butyr_kinase butyrat 36.7 1.1E+02 0.0025 27.5 6.3 52 41-103 279-332 (351)
158 PRK10241 hydroxyacylglutathion 35.7 70 0.0015 27.1 4.7 45 57-104 122-168 (251)
159 PF06925 MGDG_synth: Monogalac 35.3 50 0.0011 26.0 3.5 23 39-61 75-97 (169)
160 cd02067 B12-binding B12 bindin 34.2 1.8E+02 0.0039 21.1 6.2 52 44-103 41-92 (119)
161 cd07423 MPP_PrpE Bacillus subt 34.1 46 0.00099 27.8 3.2 29 238-268 181-209 (234)
162 PF00072 Response_reg: Respons 33.6 1.6E+02 0.0036 20.4 6.3 49 45-103 35-83 (112)
163 smart00475 53EXOc 5'-3' exonuc 33.5 1.4E+02 0.0031 25.5 6.2 58 41-99 36-105 (259)
164 CHL00073 chlN photochlorophyll 31.9 1.5E+02 0.0033 27.8 6.4 75 13-100 63-137 (457)
165 TIGR00177 molyb_syn molybdenum 31.7 66 0.0014 24.6 3.6 24 41-66 56-79 (144)
166 TIGR01012 Sa_S2_E_A ribosomal 31.4 67 0.0014 26.3 3.6 10 95-104 149-158 (196)
167 TIGR01319 glmL_fam conserved h 30.7 2.3E+02 0.0049 26.6 7.2 50 46-103 113-162 (463)
168 PF13258 DUF4049: Domain of un 30.5 83 0.0018 26.5 4.0 49 58-106 89-142 (318)
169 COG1646 Predicted phosphate-bi 29.7 2.1E+02 0.0045 24.2 6.2 50 45-103 33-82 (240)
170 KOG3873|consensus 29.6 1.5E+02 0.0033 26.7 5.7 50 14-65 128-181 (422)
171 COG0299 PurN Folate-dependent 28.9 82 0.0018 25.8 3.6 26 39-64 65-90 (200)
172 TIGR02855 spore_yabG sporulati 28.6 1.3E+02 0.0029 25.9 5.0 24 39-62 139-162 (283)
173 PRK01018 50S ribosomal protein 27.2 1.8E+02 0.0039 20.7 4.9 45 45-101 24-68 (99)
174 COG2039 Pcp Pyrrolidone-carbox 26.5 86 0.0019 25.5 3.3 25 41-65 48-72 (207)
175 PRK09482 flap endonuclease-lik 26.5 2.3E+02 0.005 24.3 6.2 58 41-99 34-105 (256)
176 PRK12419 riboflavin synthase s 26.3 2.6E+02 0.0056 22.0 5.9 50 44-94 60-109 (158)
177 cd01828 sialate_O-acetylestera 26.1 2.8E+02 0.0061 21.2 6.4 9 15-23 2-10 (169)
178 cd02071 MM_CoA_mut_B12_BD meth 26.0 2.6E+02 0.0057 20.5 5.8 50 44-101 41-90 (122)
179 PF06858 NOG1: Nucleolar GTP-b 25.9 1.6E+02 0.0034 18.9 3.8 43 52-98 12-54 (58)
180 PRK00955 hypothetical protein; 25.9 6.4E+02 0.014 24.8 10.7 40 52-99 12-51 (620)
181 COG3426 Butyrate kinase [Energ 25.8 80 0.0017 27.5 3.2 40 53-103 296-335 (358)
182 PF14360 PAP2_C: PAP2 superfam 25.6 26 0.00057 23.6 0.3 9 239-247 3-11 (74)
183 PF03437 BtpA: BtpA family; I 24.8 2.9E+02 0.0064 23.6 6.5 48 42-99 161-208 (254)
184 PRK14976 5'-3' exonuclease; Pr 24.7 2.3E+02 0.005 24.6 6.0 58 41-99 42-111 (281)
185 TIGR00114 lumazine-synth 6,7-d 23.8 3E+02 0.0065 21.1 5.8 49 45-94 51-99 (138)
186 TIGR00236 wecB UDP-N-acetylglu 23.6 2E+02 0.0043 25.5 5.7 25 41-65 74-98 (365)
187 PF13941 MutL: MutL protein 23.5 3E+02 0.0066 25.8 6.8 50 46-103 117-166 (457)
188 PRK13600 putative ribosomal pr 23.5 2.4E+02 0.0051 19.6 4.7 46 46-103 22-67 (84)
189 PRK03011 butyrate kinase; Prov 23.3 2.8E+02 0.0061 25.0 6.4 50 43-103 283-334 (358)
190 PRK13602 putative ribosomal pr 22.9 1E+02 0.0023 21.1 2.9 48 45-104 19-66 (82)
191 COG1168 MalY Bifunctional PLP- 22.7 2.1E+02 0.0045 26.1 5.3 26 229-254 182-216 (388)
192 cd03786 GT1_UDP-GlcNAc_2-Epime 22.3 3E+02 0.0065 24.1 6.6 46 41-100 76-121 (363)
193 PF01470 Peptidase_C15: Pyrogl 22.3 91 0.002 25.5 2.9 24 41-64 48-71 (202)
194 PF07819 PGAP1: PGAP1-like pro 21.9 1.9E+02 0.0041 24.1 4.8 12 90-101 3-14 (225)
195 cd01822 Lysophospholipase_L1_l 21.8 3.7E+02 0.008 20.5 6.7 13 93-105 67-79 (177)
196 cd00008 53EXOc 5'-3' exonuclea 21.7 3.1E+02 0.0067 23.1 6.1 58 41-99 37-106 (240)
197 PLN02404 6,7-dimethyl-8-ribity 21.5 3.6E+02 0.0079 20.7 5.8 58 44-102 57-117 (141)
198 PRK13195 pyrrolidone-carboxyla 21.2 1.1E+02 0.0024 25.6 3.2 22 43-64 51-72 (222)
199 PRK04169 geranylgeranylglycery 21.0 3.2E+02 0.0068 23.0 5.9 45 48-103 27-72 (232)
200 cd01012 YcaC_related YcaC rela 20.5 2.2E+02 0.0048 21.9 4.7 31 222-252 71-102 (157)
201 COG3598 RepA RecA-family ATPas 20.5 4.3E+02 0.0094 23.8 6.7 80 10-97 157-238 (402)
202 TIGR03677 rpl7ae 50S ribosomal 20.1 1.6E+02 0.0035 21.7 3.6 48 45-103 34-81 (117)
No 1
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=100.00 E-value=4.3e-37 Score=261.47 Aligned_cols=242 Identities=21% Similarity=0.400 Sum_probs=189.6
Q ss_pred EEEecCCcCCCCC---Cch----hHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcC
Q psy2930 16 IFIADTHLLGPFR---GHW----FDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFST 88 (293)
Q Consensus 16 ~~iSD~H~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (293)
++|+|+|+-..+. ..| +.++-.+.++++.+..++...+||+||++|||++.|....+++|.+.+++|.+++..
T Consensus 1 ~~vaDpql~~~~sy~~~~~~~~~~~~~~~D~ylr~~~~~~~~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~ 80 (257)
T cd08163 1 ALVADPQLVDDHTYPGRPWILNTLTEHFVDNYLRRNWRYMQKQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDP 80 (257)
T ss_pred CcccCCccccCCccCCCchhhhhhhHHhhHHHHHHHHHHHHHhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcC
Confidence 3689999976532 112 233334678888888888889999999999999999887888899889999999842
Q ss_pred C-CCceEEEecCCCCCCCCCCCCchhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhh
Q psy2930 89 P-DGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLK 167 (293)
Q Consensus 89 ~-~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~ 167 (293)
. ..+|++.||||||+++..........+|+++|+.. ++.+..++++||+|||..+.+... +.....+.+|+++.++
T Consensus 81 ~~~~~pv~~VpGNHDig~~~~~~~~~~~rf~~~Fg~~-~~~~~~~~~~fV~Lds~~l~~~~~--~~~~~~~~~~l~~~l~ 157 (257)
T cd08163 81 SPGRKMVESLPGNHDIGFGNGVVLPVRQRFEKYFGPT-SRVIDVGNHTFVILDTISLSNKDD--PDVYQPPREFLHSFSA 157 (257)
T ss_pred CCccceEEEeCCCcccCCCCCCCHHHHHHHHHHhCCC-ceEEEECCEEEEEEccccccCCcc--cccchhHHHHHHhhhh
Confidence 2 24799999999999876555555678999999987 689999999999999987765322 2345578888888776
Q ss_pred hcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccc-cccCHHHHHHHHhhcCccEEEecC
Q psy2930 168 CCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRW-ECISKESTDMLLDYLNPRLVIDGH 246 (293)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ll~~~~~~lvl~GH 246 (293)
... +..++||++|+|+++.....|++.++...+... ....+| ++|+++.+..||+..+|.+||+||
T Consensus 158 ~~~------------~~~p~ILl~H~Plyr~~~~~cg~~re~~~~~~~-~~g~~yq~~l~~~~s~~il~~~~P~~vfsGh 224 (257)
T cd08163 158 MKV------------KSKPRILLTHVPLYRPPNTSCGPLRESKTPLPY-GYGYQYQNLLEPSLSEVILKAVQPVIAFSGD 224 (257)
T ss_pred ccC------------CCCcEEEEeccccccCCCCCCCCccccCCCCCC-CCCccceeecCHHHHHHHHHhhCCcEEEecC
Confidence 432 567899999999999888889876544322211 111223 699999999999999999999999
Q ss_pred CCCCceeeccC------CCeeEEeccceeccCC
Q psy2930 247 THNGCHKYHAY------GKVHEYTVPSFSWRNK 273 (293)
Q Consensus 247 ~H~~~~~~~~~------~~~~~~~~~s~~~~~~ 273 (293)
+|.+|..+|.+ ++++||+|+|+||..|
T Consensus 225 dH~~C~~~h~~~~~~~~~~~~E~tv~S~s~~~g 257 (257)
T cd08163 225 DHDYCEVVHEYQFNGKSGSTREITVKSISMAMG 257 (257)
T ss_pred CCccceeEcccccCCCCCCceEEEecccccccC
Confidence 99999988874 5899999999999864
No 2
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=100.00 E-value=1.1e-31 Score=230.95 Aligned_cols=249 Identities=18% Similarity=0.174 Sum_probs=170.1
Q ss_pred CceEEEEEecCCcCCCCCC--chhHHHHhHHHHHHHHHHHHHhc--CCCEEEEcCccCCCCccCChhhHHHHHHHHHhhh
Q psy2930 11 NNIKAIFIADTHLLGPFRG--HWFDKLRREWQMYKTFQTAVALH--QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLF 86 (293)
Q Consensus 11 ~~~ri~~iSD~H~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~ 86 (293)
.+++|+++||+|++..... ...+.......+.+.+.+.+++. +||+|+++|||++.+..... ....++.+.+.+
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~--~~~~~~~~~~~~ 80 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDEL--RERQVSDLKDVL 80 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhh--HHHHHHHHHHHH
Confidence 5799999999999864321 11122222223445666677766 99999999999998764321 112233344433
Q ss_pred cC-CCCceEEEecCCCCCCCCCCCCchhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHH
Q psy2930 87 ST-PDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAK 165 (293)
Q Consensus 87 ~~-~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~ 165 (293)
.. ..++|+++++||||++... .....+.|.+.|+.. ++.+..++++||+|||..+..... .+....+|++||+++
T Consensus 81 ~~~~~~vp~~~i~GNHD~~~~~--~~~~~~~f~~~~g~~-~y~~~~~~~~~i~lds~~~~~~~~-~~~~~~~ql~WL~~~ 156 (262)
T cd07395 81 SLLDPDIPLVCVCGNHDVGNTP--TEESIKDYRDVFGDD-YFSFWVGGVFFIVLNSQLFFDPSE-VPELAQAQDVWLEEQ 156 (262)
T ss_pred hhccCCCcEEEeCCCCCCCCCC--ChhHHHHHHHHhCCc-ceEEEECCEEEEEeccccccCccc-cccchHHHHHHHHHH
Confidence 21 3478999999999986421 223356777788876 678889999999999987643322 234668899999999
Q ss_pred hhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEec
Q psy2930 166 LKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDG 245 (293)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~G 245 (293)
|+.+.+. ...++||++|+|++...... .+... . .....+..+.+++++++++++|||
T Consensus 157 L~~~~~~----------~~~~~iv~~H~P~~~~~~~~---~~~~~--------~--~~~~~~~~l~~ll~~~~V~~v~~G 213 (262)
T cd07395 157 LEIAKES----------DCKHVIVFQHIPWFLEDPDE---EDSYF--------N--IPKSVRKPLLDKFKKAGVKAVFSG 213 (262)
T ss_pred HHHHHhc----------cCCcEEEEECcCCccCCCCC---CcccC--------C--cCHHHHHHHHHHHHhcCceEEEEC
Confidence 9976421 35688999999997543211 00000 0 001123467889999999999999
Q ss_pred CCCCCceeeccCCCeeEEeccceeccCC-CCCceEEEEEecCCcee
Q psy2930 246 HTHNGCHKYHAYGKVHEYTVPSFSWRNK-NNPSFLMGYVVENSSGV 290 (293)
Q Consensus 246 H~H~~~~~~~~~~~~~~~~~~s~~~~~~-~~p~f~~~~~~~~~~~~ 290 (293)
|+|...... .+++.++++++.+...+ .+|||.++++++++++.
T Consensus 214 H~H~~~~~~--~~g~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 257 (262)
T cd07395 214 HYHRNAGGR--YGGLEMVVTSAIGAQLGNDKSGLRIVKVTEDKIVH 257 (262)
T ss_pred ccccCCceE--ECCEEEEEcCceecccCCCCCCcEEEEECCCceee
Confidence 999998743 34888999999886655 57999999999988743
No 3
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.97 E-value=1.3e-29 Score=218.27 Aligned_cols=236 Identities=19% Similarity=0.214 Sum_probs=159.1
Q ss_pred eEEEEEecCCcCCCCCC--chhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCC
Q psy2930 13 IKAIFIADTHLLGPFRG--HWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPD 90 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (293)
|||+++||+|++..... .+. .......+.+.+.+++.+||+||++||+++.+.....+++.. +.+.+. ..
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~---~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~----~~~~l~-~l 72 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYY---RNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDA----VLAILD-RL 72 (267)
T ss_pred CeEEEEeccccccCCCcccchH---HHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHH----HHHHHH-hc
Confidence 69999999998765322 111 112223344556666678999999999998776332233433 444442 35
Q ss_pred CceEEEecCCCCCCCCCCCCchhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCC---------------------
Q psy2930 91 GTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGC--------------------- 149 (293)
Q Consensus 91 ~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~--------------------- 149 (293)
++|++++|||||...... ......+...++.. ++.+..++++||++||......+.
T Consensus 73 ~~p~~~v~GNHD~~~~~~--~~~~~~~~~~~~~~-yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (267)
T cd07396 73 KGPVHHVLGNHDLYNPSR--EYLLLYTLLGLGAP-YYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDNSNLGLYLS 149 (267)
T ss_pred CCCEEEecCccccccccH--hhhhcccccCCCCc-eEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHhchhhhhcc
Confidence 689999999999863211 00000112223333 688899999999999965421110
Q ss_pred ------CCCchhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhccccccccc
Q psy2930 150 ------FLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWE 223 (293)
Q Consensus 150 ------~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (293)
..+...++|+.||+++|+.+.. +..++||++|+|+....... . ..
T Consensus 150 ~~~~~~~~G~l~~~Ql~WL~~~L~~~~~-----------~~~~viV~~Hhp~~~~~~~~-----~-------------~~ 200 (267)
T cd07396 150 EPRFVDWNGGIGEEQLQWLRNELQEADA-----------NGEKVIIFSHFPLHPESTSP-----H-------------GL 200 (267)
T ss_pred CccceeccCcCCHHHHHHHHHHHHHHHh-----------cCCeEEEEEeccCCCCCCCc-----c-------------cc
Confidence 1245678999999999997642 45678999999986543210 0 12
Q ss_pred ccCHHHHHHHHhhc-CccEEEecCCCCCceeeccCCCeeEEeccceeccCCCCCceEEEEEecCCcee
Q psy2930 224 CISKESTDMLLDYL-NPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRNKNNPSFLMGYVVENSSGV 290 (293)
Q Consensus 224 ~l~~~~~~~ll~~~-~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~~~~p~f~~~~~~~~~~~~ 290 (293)
..+.+.+.++++++ +++++|+||+|...... .+|++++++||+|.+....|-|.++.++++.+.+
T Consensus 201 ~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~--~~gi~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 266 (267)
T cd07396 201 LWNHEEVLSILRAYGCVKACISGHDHEGGYAQ--RHGIHFLTLEGMVETPPESNAFGVVIVYEDRLIL 266 (267)
T ss_pred ccCHHHHHHHHHhCCCEEEEEcCCcCCCCccc--cCCeeEEEechhhcCCCCCCceEEEEEeCCceee
Confidence 23345678899885 79999999999998643 3599999999999993256899999999998754
No 4
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.97 E-value=9e-29 Score=214.11 Aligned_cols=230 Identities=16% Similarity=0.176 Sum_probs=147.3
Q ss_pred CCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHh-cCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhh
Q psy2930 8 ESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL-HQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLF 86 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~ 86 (293)
.+..+|||+++||+|+.......... ......+.+++..+.+. .+||+||++||+++.+. .+++.. +.+.+
T Consensus 10 ~~~~~~~i~~iSD~Hl~~~~~~~~~~-~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~---~~~~~~----~~~~l 81 (275)
T PRK11148 10 AGEARVRILQITDTHLFADEHETLLG-VNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS---SEAYQH----FAEGI 81 (275)
T ss_pred CCCCCEEEEEEcCcccCCCCCCceec-cCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC---HHHHHH----HHHHH
Confidence 45677999999999985532221111 11111233333333232 37999999999999764 333433 33333
Q ss_pred cCCCCceEEEecCCCCCCCCCCCCchhHHHHHHH-hCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHH
Q psy2930 87 STPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRA-FNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAK 165 (293)
Q Consensus 87 ~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~ 165 (293)
. ..++|++++|||||... ...+.+.+. +. ..+..+..++++||+|||.... ...+....+|++||++.
T Consensus 82 ~-~l~~Pv~~v~GNHD~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~i~Lds~~~g---~~~G~l~~~ql~wL~~~ 150 (275)
T PRK11148 82 A-PLRKPCVWLPGNHDFQP------AMYSALQDAGIS-PAKHVLIGEHWQILLLDSQVFG---VPHGELSEYQLEWLERK 150 (275)
T ss_pred h-hcCCcEEEeCCCCCChH------HHHHHHhhcCCC-ccceEEecCCEEEEEecCCCCC---CcCCEeCHHHHHHHHHH
Confidence 2 34689999999999831 111222211 11 1133445567999999997632 23455778999999999
Q ss_pred hhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhc-CccEEEe
Q psy2930 166 LKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYL-NPRLVID 244 (293)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~-~~~lvl~ 244 (293)
|+.. ++++.||++||||...... .++. ....+.+.+.++++++ +++++|+
T Consensus 151 L~~~-------------~~~~~vv~~hH~P~~~~~~---~~d~-------------~~l~n~~~l~~ll~~~~~v~~vl~ 201 (275)
T PRK11148 151 LADA-------------PERHTLVLLHHHPLPAGCA---WLDQ-------------HSLRNAHELAEVLAKFPNVKAILC 201 (275)
T ss_pred HhhC-------------CCCCeEEEEcCCCCCCCcc---hhhc-------------cCCCCHHHHHHHHhcCCCceEEEe
Confidence 9875 4567777777766443221 1111 1233456788999998 8999999
Q ss_pred cCCCCCceeeccCCCeeEEeccceeccCC----------CCCceEEEEEecCC
Q psy2930 245 GHTHNGCHKYHAYGKVHEYTVPSFSWRNK----------NNPSFLMGYVVENS 287 (293)
Q Consensus 245 GH~H~~~~~~~~~~~~~~~~~~s~~~~~~----------~~p~f~~~~~~~~~ 287 (293)
||+|...... .+|++.+.+||+|++.. ..|||.++++.+++
T Consensus 202 GH~H~~~~~~--~~gi~~~~~ps~~~q~~~~~~~~~~~~~~~g~~~~~l~~~g 252 (275)
T PRK11148 202 GHIHQELDLD--WNGRRLLATPSTCVQFKPHCTNFTLDTVAPGWRELELHADG 252 (275)
T ss_pred cccChHHhce--ECCEEEEEcCCCcCCcCCCCCccccccCCCcEEEEEEcCCC
Confidence 9999986542 34899999999986532 23799999998776
No 5
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.96 E-value=5.1e-28 Score=205.57 Aligned_cols=220 Identities=19% Similarity=0.256 Sum_probs=149.2
Q ss_pred EEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhc--CCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCC
Q psy2930 14 KAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALH--QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDG 91 (293)
Q Consensus 14 ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (293)
||+++||+|++......+... . .....+.+.+.+++. +||+||++|||++.+. .+++.. +.+.+. ..+
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~-~-~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~---~~~~~~----~~~~l~-~~~ 70 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGV-D-TAASLEAVLAHINALHPRPDLVLVTGDLTDDGS---PESYER----LRELLA-ALP 70 (240)
T ss_pred CEEEEeCCccCCCCcceecCc-C-HHHHHHHHHHHHHhcCCCCCEEEECccCCCCCC---HHHHHH----HHHHHh-hcC
Confidence 699999999986532111000 0 111234455556665 9999999999999765 233433 333332 347
Q ss_pred ceEEEecCCCCCCCCCCCCchhHHHHHHHhCC------CCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHH
Q psy2930 92 TELHVVPGNHDMGFHYRLHPYLNDRFSRAFNS------SMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAK 165 (293)
Q Consensus 92 ~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~ 165 (293)
+|+++++||||.. ..+.+.++. ..++.+..++++|+++|+..... ..+...++|++||++.
T Consensus 71 ~p~~~v~GNHD~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~---~~~~~~~~ql~wL~~~ 137 (240)
T cd07402 71 IPVYLLPGNHDDR----------AAMRAVFPELPPAPGFVQYVVDLGGWRLILLDSSVPGQ---HGGELCAAQLDWLEAA 137 (240)
T ss_pred CCEEEeCCCCCCH----------HHHHHhhccccccccccceeEecCCEEEEEEeCCCCCC---cCCEECHHHHHHHHHH
Confidence 8999999999974 122333332 12578889999999999866322 2234678899999999
Q ss_pred hhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhc-CccEEEe
Q psy2930 166 LKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYL-NPRLVID 244 (293)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~-~~~lvl~ 244 (293)
|+.. ++.++|+++|+|+...... ..+. +...+.+.+.+++.++ +++++|+
T Consensus 138 L~~~-------------~~~~~il~~H~pp~~~~~~---~~~~-------------~~~~~~~~~~~~l~~~~~v~~v~~ 188 (240)
T cd07402 138 LAEA-------------PDKPTLVFLHHPPFPVGIA---WMDA-------------IGLRNAEALAAVLARHPNVRAILC 188 (240)
T ss_pred HHhC-------------CCCCEEEEECCCCccCCch---hhhh-------------hhCCCHHHHHHHHhcCCCeeEEEE
Confidence 9865 4578999999999654321 0000 1123355778899999 8999999
Q ss_pred cCCCCCceeeccCCCeeEEeccceeccCC----------CCCceEEEEEecCC
Q psy2930 245 GHTHNGCHKYHAYGKVHEYTVPSFSWRNK----------NNPSFLMGYVVENS 287 (293)
Q Consensus 245 GH~H~~~~~~~~~~~~~~~~~~s~~~~~~----------~~p~f~~~~~~~~~ 287 (293)
||+|...... .++++.++++|++++.. ..+||..+++.+++
T Consensus 189 GH~H~~~~~~--~~g~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (240)
T cd07402 189 GHVHRPIDGS--WGGIPLLTAPSTCHQFAPDLDDFALDALAPGYRALSLHEDG 239 (240)
T ss_pred CCcCchHHeE--ECCEEEEEcCcceeeecCCCCcccccccCCCCcEEEEecCC
Confidence 9999987643 35899999999987643 24689989887664
No 6
>KOG3662|consensus
Probab=99.95 E-value=1.8e-27 Score=208.62 Aligned_cols=275 Identities=29% Similarity=0.483 Sum_probs=190.2
Q ss_pred CCCCCCC---CCCCceEEEEEecCCcCC----CCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChh
Q psy2930 1 CNWPASP---ESINNIKAIFIADTHLLG----PFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGE 73 (293)
Q Consensus 1 ~~w~~~~---~~~~~~ri~~iSD~H~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~ 73 (293)
|.||.+. .++..+|++.+||+|+-+ .....|++++.+++++++.+.......+||.++++|||+++|.+.+++
T Consensus 34 c~Wp~~~~~~~~~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~e 113 (410)
T KOG3662|consen 34 CQWPGKKQWASNENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDE 113 (410)
T ss_pred ccCCccccccCCCCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChH
Confidence 9999998 446789999999999987 334578999999999999999998889999999999999999999999
Q ss_pred hHHHHHHHHHhhhcCCCCceEEEecCCCCCCCCCCCCchhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCC-C
Q psy2930 74 DFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFL-C 152 (293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~-~ 152 (293)
+|.+.+++|+++++.+..+|++.+|||||+++.....++..++|++.|+.. ...+.++++.|+++|+..+.+..... .
T Consensus 114 Ef~~~~~RfkkIf~~k~~~~~~~i~GNhDIGf~~~~~~~~i~Rfe~~fg~~-~r~f~v~~~tf~~~d~~~ls~~~~~~~~ 192 (410)
T KOG3662|consen 114 EFKKRYERFKKIFGRKGNIKVIYIAGNHDIGFGNELIPEWIDRFESVFGPT-ERRFDVGNLTFVMFDSNALSGNPDINVL 192 (410)
T ss_pred HHHHHHHHHHHhhCCCCCCeeEEeCCccccccccccchhHHHHHHHhhcch-hhhhccCCceeEEeeehhhcCCCchhhh
Confidence 999999999999976679999999999999998888888899999999974 68899999999999999887764321 1
Q ss_pred chhHHHHHHHHHHhhh----ccc--CCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccc-ccccccc
Q psy2930 153 KPAQDRISLISAKLKC----CRK--DRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKF-RQRWECI 225 (293)
Q Consensus 153 ~~~~~~l~~l~~~l~~----~~~--~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 225 (293)
......++...-.... ... +..+.......+..|.++ .|+|++......|...+....++..+.. ++-....
T Consensus 193 ~~~~~fl~~~~~~~~~~~r~~~~h~p~~~~~~p~l~~~~p~~~-~h~ply~g~~~qc~~~~~~~~~~~~e~~~~~~~~~~ 271 (410)
T KOG3662|consen 193 SEARDFLNSVSTSGDGYPRILLAHDPDLYGIKPELPTSGPDRL-QHIPLYSGSAAQCLFEPATKVIELNENIEREFDLSG 271 (410)
T ss_pred hhhhhhhcccccCCCCcceeeecccchhccCCcccCCCccccc-ccceeecccccccccccccchHHHhhhhhhhccccc
Confidence 1111122111100000 000 000011111112233333 3777776644455443333312111111 1111222
Q ss_pred CHHHHHHHHhhcCccEEEecCCCCCceeeccC--CCeeEEeccceeccCCCCCce
Q psy2930 226 SKESTDMLLDYLNPRLVIDGHTHNGCHKYHAY--GKVHEYTVPSFSWRNKNNPSF 278 (293)
Q Consensus 226 ~~~~~~~ll~~~~~~lvl~GH~H~~~~~~~~~--~~~~~~~~~s~~~~~~~~p~f 278 (293)
+.+...+++. ..+.+++.||+|..+...+.. .+..++++++++++.+..++|
T Consensus 272 ~~~~~~~l~~-~~~~~~~~g~~~~~~~~k~~~~~~g~~~~tv~~~s~~~~~~~~~ 325 (410)
T KOG3662|consen 272 DDEDHCSLLK-LNYKLVVGGHDHKEYNDKHASMSSGALEYTVLLLSLRFGQDFNM 325 (410)
T ss_pred ccccceEEee-cccccccCCcCccccccccccccccccccchhhhhhhccccHHH
Confidence 3334444554 578999999999987755432 478999999999887644433
No 7
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.94 E-value=2.5e-25 Score=193.11 Aligned_cols=235 Identities=18% Similarity=0.162 Sum_probs=152.1
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCC-CCccCC-hhhHHHHHHHHHhhhcCCC
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLD-EGQYVG-GEDFDNYVRRFYSLFSTPD 90 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~-~~~~~~-~~~~~~~~~~~~~~~~~~~ 90 (293)
++|++++|...+.... ...+.+++.+.+++.+||+||++||++. .|.... +..+...++.+.+.+ ..
T Consensus 1 ~~f~~~gD~g~~~~~~---------~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~--~~ 69 (277)
T cd07378 1 LRFLALGDWGGGGTAG---------QKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAP--SL 69 (277)
T ss_pred CeEEEEeecCCCCCHH---------HHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccch--hh
Confidence 5899999997641111 1124455666666789999999999974 443221 233433333333322 25
Q ss_pred CceEEEecCCCCCCCCCCCCchhHHH-HHHH--hCCCCcceEEeC------CEEEEEEeceeccCCC--------CCCCc
Q psy2930 91 GTELHVVPGNHDMGFHYRLHPYLNDR-FSRA--FNSSMVKLLSIK------GSYFVLINSMALEGDG--------CFLCK 153 (293)
Q Consensus 91 ~~~~~~v~GNHD~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~------~~~~i~lds~~~~~~~--------~~~~~ 153 (293)
++|+++++||||.............. +... ++. .+|.+..+ +++||+|||..+.... ...+.
T Consensus 70 ~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~ 148 (277)
T cd07378 70 QVPWYLVLGNHDYSGNVSAQIDYTKRPNSPRWTMPA-YYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGK 148 (277)
T ss_pred cCCeEEecCCcccCCCchheeehhccCCCCCccCcc-hheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchh
Confidence 78999999999986321111000000 0001 122 25677776 7999999999875332 12345
Q ss_pred hhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHH
Q psy2930 154 PAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDML 233 (293)
Q Consensus 154 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 233 (293)
...+|++||++.|+.+ +..++||++|||++...... . + ...+..+.++
T Consensus 149 ~~~~Q~~wL~~~L~~~-------------~~~~~iv~~H~P~~~~~~~~--~-~----------------~~~~~~l~~l 196 (277)
T cd07378 149 LAEEQLAWLEKTLAAS-------------TADWKIVVGHHPIYSSGEHG--P-T----------------SCLVDRLLPL 196 (277)
T ss_pred hHHHHHHHHHHHHHhc-------------CCCeEEEEeCccceeCCCCC--C-c----------------HHHHHHHHHH
Confidence 7789999999999875 44688999999997643210 0 0 0113467889
Q ss_pred HhhcCccEEEecCCCCCceeeccCCCeeEEeccceeccC-----------------CCCCceEEEEEecCCceee
Q psy2930 234 LDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRN-----------------KNNPSFLMGYVVENSSGVN 291 (293)
Q Consensus 234 l~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~-----------------~~~p~f~~~~~~~~~~~~~ 291 (293)
+++++++++|+||+|..........+++++++++.+... ....||.+++++++.++++
T Consensus 197 ~~~~~v~~vl~GH~H~~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v~~~~l~~~ 271 (277)
T cd07378 197 LKKYKVDAYLSGHDHNLQHIKDDGSGTSFVVSGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLELTKEELTVR 271 (277)
T ss_pred HHHcCCCEEEeCCcccceeeecCCCCcEEEEeCCCcccCCCCCccCcccccccccccCCCCEEEEEEecCEEEEE
Confidence 999999999999999998765333488999998766321 1236999999999987765
No 8
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.94 E-value=2.8e-25 Score=194.51 Aligned_cols=208 Identities=16% Similarity=0.154 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHhc--CCCEEEEcCccCCCCccCChh------hHHHHHHHHHhhhcCCCCceEEEecCCCCCCCCCCC
Q psy2930 38 EWQMYKTFQTAVALH--QPEHIFVLGDLLDEGQYVGGE------DFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRL 109 (293)
Q Consensus 38 ~~~~~~~~~~~~~~~--~pd~vi~~GDl~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~~~~~~ 109 (293)
.+.+.+++.+.+++. +||+||++||++..+...... .+....+.+.+.+ .++|++.++||||.......
T Consensus 51 p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~pv~~~~GNHD~~p~~~~ 127 (296)
T cd00842 51 PWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAF---PDTPVYPALGNHDSYPVNQF 127 (296)
T ss_pred cHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhC---CCCCEEEcCCCCCCCccccc
Confidence 356777777777777 999999999999976532211 1233444454443 68999999999998643211
Q ss_pred C-----chhH----HHHHHHhC--------CCCcceEE-eCCEEEEEEeceeccCCCCC----CCchhHHHHHHHHHHhh
Q psy2930 110 H-----PYLN----DRFSRAFN--------SSMVKLLS-IKGSYFVLINSMALEGDGCF----LCKPAQDRISLISAKLK 167 (293)
Q Consensus 110 ~-----~~~~----~~~~~~~~--------~~~~~~~~-~~~~~~i~lds~~~~~~~~~----~~~~~~~~l~~l~~~l~ 167 (293)
. .... +.|..... ...||++. .+++++|+|||+.+...... .......|++||+++|+
T Consensus 128 ~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~ 207 (296)
T cd00842 128 PPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQ 207 (296)
T ss_pred CCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHH
Confidence 1 1112 22322222 12356666 79999999999987543221 22345789999999999
Q ss_pred hcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcC--ccEEEec
Q psy2930 168 CCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLN--PRLVIDG 245 (293)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~--~~lvl~G 245 (293)
.+++ .+.+++|++|+|+....... . ....+.+.++++++. +.++|+|
T Consensus 208 ~a~~-----------~~~~v~I~~HiPp~~~~~~~---~-----------------~~~~~~~~~ii~~y~~~i~~~~~G 256 (296)
T cd00842 208 EAEQ-----------AGEKVWIIGHIPPGVNSYDT---L-----------------ENWSERYLQIINRYSDTIAGQFFG 256 (296)
T ss_pred HHHH-----------CCCeEEEEeccCCCCccccc---c-----------------hHHHHHHHHHHHHHHHhhheeeec
Confidence 8754 56778999999996543210 0 011246788999996 7799999
Q ss_pred CCCCCceeeccC------CCeeEEeccceeccCCCCCceE
Q psy2930 246 HTHNGCHKYHAY------GKVHEYTVPSFSWRNKNNPSFL 279 (293)
Q Consensus 246 H~H~~~~~~~~~------~~~~~~~~~s~~~~~~~~p~f~ 279 (293)
|+|......... -....+++||++...+++|||+
T Consensus 257 H~H~d~~~~~~~~~~~~~~~~~~~~~psitp~~~~nP~~r 296 (296)
T cd00842 257 HTHRDEFRVFYDDNDTGEPINVALIAPSVTPYSGNNPGFR 296 (296)
T ss_pred ccccceEEEEeCCCCCCCceEEEEecCccCcCCCCCCCCC
Confidence 999998755221 1578999999999999999984
No 9
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.93 E-value=2e-24 Score=184.63 Aligned_cols=196 Identities=16% Similarity=0.142 Sum_probs=124.2
Q ss_pred EEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccC------ChhhHHHHHHHHHhhhcC
Q psy2930 15 AIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYV------GGEDFDNYVRRFYSLFST 88 (293)
Q Consensus 15 i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~------~~~~~~~~~~~~~~~~~~ 88 (293)
|+++||+|++........ ...+.+.+.+++.+||+||++||+++.+... .+.+|..+.+.+.+...
T Consensus 2 ~~~iSDlH~g~~~~~~~~-------~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (256)
T cd07401 2 FVHISDIHVSSFHPPNRA-------QDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSV- 73 (256)
T ss_pred EEEecccccCCcCchhhh-------hHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCC-
Confidence 799999999865432110 0123466777889999999999999865421 12234343333333211
Q ss_pred CCCceEEEecCCCCCCCCCCCCchhHHHHHHHhCC---CC-cceEE--eCCEEEEEEeceeccCCCC---CCCchhHHHH
Q psy2930 89 PDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNS---SM-VKLLS--IKGSYFVLINSMALEGDGC---FLCKPAQDRI 159 (293)
Q Consensus 89 ~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~--~~~~~~i~lds~~~~~~~~---~~~~~~~~~l 159 (293)
....|++.++||||++..... ......|+++.+. .. ++... .++++||+|||..+.+... ..+...++|+
T Consensus 74 ~~~~p~~~v~GNHD~~~~~~~-~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql 152 (256)
T cd07401 74 INKEKWFDIRGNHDLFNIPSL-DSENNYYRKYSATGRDGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLL 152 (256)
T ss_pred CCcceEEEeCCCCCcCCCCCc-cchhhHHHHhheecCCCccceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHHH
Confidence 235799999999999532111 1112344444433 21 22222 3899999999987533221 2356778999
Q ss_pred HHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCc
Q psy2930 160 SLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNP 239 (293)
Q Consensus 160 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~ 239 (293)
+||++.|+.+. ...++||++|+|+...... . ......+.++++++++
T Consensus 153 ~wL~~~L~~~~------------~~~~~IV~~HhP~~~~~~~---~------------------~~~~~~~~~ll~~~~v 199 (256)
T cd07401 153 DRLEKELEKST------------NSNYTIWFGHYPTSTIISP---S------------------AKSSSKFKDLLKKYNV 199 (256)
T ss_pred HHHHHHHHhcc------------cCCeEEEEEcccchhccCC---C------------------cchhHHHHHHHHhcCC
Confidence 99999998653 3457899999998432110 0 0001126788999999
Q ss_pred cEEEecCCCCCce
Q psy2930 240 RLVIDGHTHNGCH 252 (293)
Q Consensus 240 ~lvl~GH~H~~~~ 252 (293)
+++||||+|....
T Consensus 200 ~~vl~GH~H~~~~ 212 (256)
T cd07401 200 TAYLCGHLHPLGG 212 (256)
T ss_pred cEEEeCCccCCCc
Confidence 9999999999987
No 10
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.93 E-value=4.6e-24 Score=177.74 Aligned_cols=202 Identities=18% Similarity=0.227 Sum_probs=131.6
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
|||+++||+|++....... +. ...+.+.+.+++.+||+|+++||+++.+. ...+|....+.+..+- ..++
T Consensus 1 f~~~~~~D~q~~~~~~~~~---~~---~~~~~i~~~~~~~~~d~iv~~GDl~~~~~--~~~~~~~~~~~~~~l~--~~~~ 70 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEV---FD---AQTDWIVDNAEALNIAFVLHLGDIVDDGD--NDAEWEAADKAFARLD--KAGI 70 (214)
T ss_pred CEEEEecCCCcCCcCCHHH---HH---HHHHHHHHHHHHcCCCEEEECCCccCCCC--CHHHHHHHHHHHHHHH--HcCC
Confidence 6899999999976533221 11 12233455556679999999999999765 2345666555554443 2578
Q ss_pred eEEEecCCCCCCCCCCCCchhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhhhcccC
Q psy2930 93 ELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKD 172 (293)
Q Consensus 93 ~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 172 (293)
|+++++||||. ++.+|+. ...+|++||++.|+..
T Consensus 71 p~~~~~GNHD~--------------------------------~~~ld~~-----------~~~~ql~WL~~~L~~~--- 104 (214)
T cd07399 71 PYSVLAGNHDL--------------------------------VLALEFG-----------PRDEVLQWANEVLKKH--- 104 (214)
T ss_pred cEEEECCCCcc--------------------------------hhhCCCC-----------CCHHHHHHHHHHHHHC---
Confidence 99999999991 2223221 2378999999999864
Q ss_pred CCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhc-CccEEEecCCCCCc
Q psy2930 173 RECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYL-NPRLVIDGHTHNGC 251 (293)
Q Consensus 173 ~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~-~~~lvl~GH~H~~~ 251 (293)
++.++|+++|+|+...... ++... +... ..-..+.+.++++++ +++++|+||.|...
T Consensus 105 ----------~~~~~iv~~H~p~~~~~~~----~~~~~-------~~~~-~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~ 162 (214)
T cd07399 105 ----------PDRPAILTTHAYLNCDDSR----PDSID-------YDSD-VNDGQQIWDKLVKKNDNVFMVLSGHVHGAG 162 (214)
T ss_pred ----------CCCCEEEEecccccCCCCc----Ccccc-------cccc-cccHHHHHHHHHhCCCCEEEEEccccCCCc
Confidence 5678999999999754321 11100 0000 011123577899988 79999999999997
Q ss_pred eeec---c-CC-CeeEEeccceeccCCCCCceEEEEEecCCceeee
Q psy2930 252 HKYH---A-YG-KVHEYTVPSFSWRNKNNPSFLMGYVVENSSGVNL 292 (293)
Q Consensus 252 ~~~~---~-~~-~~~~~~~~s~~~~~~~~p~f~~~~~~~~~~~~~~ 292 (293)
.... . .| .++.+.+..-....+++|.|++++|++++.+|.+
T Consensus 163 ~~~~~~~~~~g~~v~~~~~~~q~~~~~g~~~~r~~~f~~~~~~i~~ 208 (214)
T cd07399 163 RTTLVSVGDAGRTVHQMLADYQGEPNGGNGFLRLLEFDPDNNKIDV 208 (214)
T ss_pred eEEEcccCCCCCEeeEEeecccCCCCCCcceEEEEEEecCCCEEEE
Confidence 6543 1 12 2555555442333457899999999999866654
No 11
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.93 E-value=1.4e-24 Score=189.91 Aligned_cols=236 Identities=16% Similarity=0.153 Sum_probs=146.7
Q ss_pred CCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHH-hcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcC
Q psy2930 10 INNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVA-LHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFST 88 (293)
Q Consensus 10 ~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (293)
..++||++++|+|.+..... +.+.++++ ..+||+||++||+++.+......+|..+.+.+..+.
T Consensus 2 ~~~~~f~v~gD~~~~~~~~~-------------~~~~~l~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~-- 66 (294)
T cd00839 2 DTPFKFAVFGDMGQNTNNST-------------NTLDHLEKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLA-- 66 (294)
T ss_pred CCcEEEEEEEECCCCCCCcH-------------HHHHHHHhccCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHH--
Confidence 46799999999998522111 11222222 379999999999997654332345666666665554
Q ss_pred CCCceEEEecCCCCCCCCCCCCchhH--HHHHHHh-----CCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHH
Q psy2930 89 PDGTELHVVPGNHDMGFHYRLHPYLN--DRFSRAF-----NSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISL 161 (293)
Q Consensus 89 ~~~~~~~~v~GNHD~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~ 161 (293)
..+|+++++||||............ ..+.... ....+|.+..++++||+|||..... .+....+|++|
T Consensus 67 -~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~----~~~~~~~q~~W 141 (294)
T cd00839 67 -SYVPYMVTPGNHEADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFY----GDGPGSPQYDW 141 (294)
T ss_pred -hcCCcEEcCcccccccCCCCcccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccc----cCCCCcHHHHH
Confidence 4689999999999965321111000 0000000 1123688999999999999976432 22356789999
Q ss_pred HHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccE
Q psy2930 162 ISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRL 241 (293)
Q Consensus 162 l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~l 241 (293)
|++.|+.+.+. ...++|+++|+|++........ .. ...-.++.+.++++++++++
T Consensus 142 L~~~L~~~~~~----------~~~~~iv~~H~P~~~~~~~~~~---~~------------~~~~~~~~l~~ll~~~~v~~ 196 (294)
T cd00839 142 LEADLAKVDRS----------KTPWIIVMGHRPMYCSNTDHDD---CI------------EGEKMRAALEDLFYKYGVDL 196 (294)
T ss_pred HHHHHHHhccc----------CCCeEEEEeccCcEecCccccc---cc------------hhHHHHHHHHHHHHHhCCCE
Confidence 99999976320 1235788999999765432100 00 01112346788999999999
Q ss_pred EEecCCCCCceeec--------------cCCCeeEEeccceeccC----------------CCCCceEEEEEecC-Ccee
Q psy2930 242 VIDGHTHNGCHKYH--------------AYGKVHEYTVPSFSWRN----------------KNNPSFLMGYVVEN-SSGV 290 (293)
Q Consensus 242 vl~GH~H~~~~~~~--------------~~~~~~~~~~~s~~~~~----------------~~~p~f~~~~~~~~-~~~~ 290 (293)
+|+||+|.+.+... ...++.++++++..... ....||.++++..+ .+++
T Consensus 197 vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~t~l~~ 276 (294)
T cd00839 197 VLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGNDEGLDPFSAPPPAWSAFRESDYGFGRLTVHNSTHLHF 276 (294)
T ss_pred EEEccceeeEeechhhCCEeccccccccCCCccEEEEECCCccccCcCcccCCCCCceEEEeccCCEEEEEEEecCeEEE
Confidence 99999999976432 11256677766533111 13468888888876 3443
No 12
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.92 E-value=9.1e-24 Score=170.13 Aligned_cols=165 Identities=30% Similarity=0.589 Sum_probs=133.9
Q ss_pred EEEecCCcCCCCCCc----hhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCC
Q psy2930 16 IFIADTHLLGPFRGH----WFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDG 91 (293)
Q Consensus 16 ~~iSD~H~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (293)
+++||+|+-+..... |+.++.+++++.+++..+++..+||+|+++|||++.|...++++|.+.+++|.+++....+
T Consensus 1 llvADPqllg~~~~~~~~~~~~~~~~D~yl~r~~~~a~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~ 80 (195)
T cd08166 1 LLVADPQILGYQNENFGLGWIARWDSDRYLKKTYHLALNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNG 80 (195)
T ss_pred CcccCccccCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 478999998765433 7788889999999999999999999999999999999988888899999999999877789
Q ss_pred ceEEEecCCCCCCCC-CCCCchhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhhhcc
Q psy2930 92 TELHVVPGNHDMGFH-YRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCR 170 (293)
Q Consensus 92 ~~~~~v~GNHD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 170 (293)
+|++.||||||++.. ....+...++|++.|
T Consensus 81 ~~~~~VpGNHDIG~~~~~~~~~~v~RF~~~F------------------------------------------------- 111 (195)
T cd08166 81 TKIIYLPGDNDIGGEEEDPIESKIRRFEKYF------------------------------------------------- 111 (195)
T ss_pred CcEEEECCCCCcCCCCCCcCHHHHHHHHHhh-------------------------------------------------
Confidence 999999999999863 334456678888777
Q ss_pred cCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCCC
Q psy2930 171 KDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNG 250 (293)
Q Consensus 171 ~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~ 250 (293)
|+++|.|+..... ..+..++.++.+.++|+||.|..
T Consensus 112 -----------------i~lsH~P~~~~~~---------------------------~~~~~~~~~~~p~~Ifs~H~H~s 147 (195)
T cd08166 112 -----------------IMLSHVPLLAEGG---------------------------QALKHVVTDLDPDLIFSAHRHKS 147 (195)
T ss_pred -----------------eeeeccccccccc---------------------------HHHHHHHHhcCceEEEEcCccce
Confidence 4788999854332 26788889999999999999999
Q ss_pred ceeeccC------------------------C-CeeEEeccceeccCC
Q psy2930 251 CHKYHAY------------------------G-KVHEYTVPSFSWRNK 273 (293)
Q Consensus 251 ~~~~~~~------------------------~-~~~~~~~~s~~~~~~ 273 (293)
....... . -+.||.+|++|++.|
T Consensus 148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ei~vptcsyrmg 195 (195)
T cd08166 148 SIFMYDRLLRQNSLFTRVSPDDPTLKQLILQNEVMHEIQVPTCSYRMG 195 (195)
T ss_pred eeEEeecccchhheeeeccCCcchHHHhhcCCcceEEEECCcccccCC
Confidence 8654211 1 267888888887754
No 13
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.91 E-value=3e-23 Score=164.05 Aligned_cols=156 Identities=55% Similarity=1.037 Sum_probs=114.5
Q ss_pred EEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEE
Q psy2930 16 IFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELH 95 (293)
Q Consensus 16 ~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (293)
+++||+|++....+.+++++.++..+.+.+.+.+++.+||+|+++||+++.+.......|.....++.+++....++|++
T Consensus 1 ~~isD~HL~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (156)
T cd08165 1 MFLADTHLLGSILGHWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLH 80 (156)
T ss_pred CccccchhcCCcccHHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEE
Confidence 46899999766555666777777888889999999999999999999999876555566777777888776423468999
Q ss_pred EecCCCCCCCCCCCCchhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhhhcccCCCC
Q psy2930 96 VVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDREC 175 (293)
Q Consensus 96 ~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 175 (293)
+++||||.+...... ..-+++.++.
T Consensus 81 ~v~GNHD~~~~~~~~---------------------------------------------~~~~~~~~~~---------- 105 (156)
T cd08165 81 VVVGNHDIGFHYEMT---------------------------------------------TYKLERFEKV---------- 105 (156)
T ss_pred EEcCCCCcCCCCccC---------------------------------------------HHHHHHHHHH----------
Confidence 999999985311101 1112222211
Q ss_pred CccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCCCceeec
Q psy2930 176 PKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKYH 255 (293)
Q Consensus 176 ~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~~ 255 (293)
.|+++|.|... ++.++++.++||||+|......+
T Consensus 106 -----------~~~l~H~p~~~-----------------------------------~~~~~~~~~~l~GH~H~~~~~~~ 139 (156)
T cd08165 106 -----------FILLQHFPLYR-----------------------------------LLQWLKPRLVLSGHTHSFCEVTH 139 (156)
T ss_pred -----------eeeeeCChHHH-----------------------------------HHHhhCCCEEEEcccCCCceeEE
Confidence 27888988611 23334788999999999887765
Q ss_pred cCCCeeEEeccceeccCC
Q psy2930 256 AYGKVHEYTVPSFSWRNK 273 (293)
Q Consensus 256 ~~~~~~~~~~~s~~~~~~ 273 (293)
. ++++++++||+||+++
T Consensus 140 ~-~~~~e~~~~~~~~~~~ 156 (156)
T cd08165 140 P-DGTPEVTVPSFSWRNR 156 (156)
T ss_pred E-CCEEEEEEecceecCC
Confidence 5 4999999999999874
No 14
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.90 E-value=3.2e-22 Score=168.76 Aligned_cols=208 Identities=14% Similarity=0.082 Sum_probs=129.4
Q ss_pred EEEEecCCcCCCCC---CchhHHHHhHHHHHHHHHHHHHhc--CCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCC
Q psy2930 15 AIFIADTHLLGPFR---GHWFDKLRREWQMYKTFQTAVALH--QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTP 89 (293)
Q Consensus 15 i~~iSD~H~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (293)
|.++||+|+...-. ..+-+. ...+.+++.+.+++. +||+||++||+++.+. ........+.+.+
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~---~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~---~~~~~~~l~~l~~----- 69 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPE---WKNHTEKIKENWDNVVAPEDIVLIPGDISWAMK---LEEAKLDLAWIDA----- 69 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCcc---HHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCC---hHHHHHHHHHHHh-----
Confidence 46899999974211 111111 123445566666666 9999999999997543 1122232333332
Q ss_pred CCceEEEecCCCCCCCCCCCCchhHHHHHHHhCCC-----CcceEEeCCEEEEEEeceeccCCCC----------CCCch
Q psy2930 90 DGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSS-----MVKLLSIKGSYFVLINSMALEGDGC----------FLCKP 154 (293)
Q Consensus 90 ~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~lds~~~~~~~~----------~~~~~ 154 (293)
...|+++|+||||.+.. ..+.+++.+... .+..+.++++.|++++.-.+.+... ..+..
T Consensus 70 l~~~v~~V~GNHD~~~~------~~~~~~~~l~~~~~~~~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (232)
T cd07393 70 LPGTKVLLKGNHDYWWG------SASKLRKALEESRLALLFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKI 143 (232)
T ss_pred CCCCeEEEeCCccccCC------CHHHHHHHHHhcCeEEeccCcEEECCEEEEEEEeeCCCCCccccccccccchhHHHH
Confidence 23478999999998421 124444444332 1456677889999875322221110 11233
Q ss_pred hHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHH
Q psy2930 155 AQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLL 234 (293)
Q Consensus 155 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll 234 (293)
...++.||++.|+.+.... ...++|+++|+|++.... +...+.+++
T Consensus 144 ~~~~l~~l~~~L~~~~~~~---------~~~~~i~~~H~p~~~~~~-------------------------~~~~~~~~~ 189 (232)
T cd07393 144 FERELERLELSLKAAKKRE---------KEKIKIVMLHYPPANENG-------------------------DDSPISKLI 189 (232)
T ss_pred HHHHHHHHHHHHHHHHhCC---------CCCCEEEEECCCCcCCCC-------------------------CHHHHHHHH
Confidence 4678999999998753200 224689999999865321 112456788
Q ss_pred hhcCccEEEecCCCCCceee---ccCCCeeEEeccceeccCC
Q psy2930 235 DYLNPRLVIDGHTHNGCHKY---HAYGKVHEYTVPSFSWRNK 273 (293)
Q Consensus 235 ~~~~~~lvl~GH~H~~~~~~---~~~~~~~~~~~~s~~~~~~ 273 (293)
++.+++++|+||+|.+.... ...++++++++|+.|++..
T Consensus 190 ~~~~v~~vl~GH~H~~~~~~~~~~~~~gi~~~~~~~~~~~~~ 231 (232)
T cd07393 190 EEYGVDICVYGHLHGVGRDRAINGERGGIRYQLVSADYLNFQ 231 (232)
T ss_pred HHcCCCEEEECCCCCCcccccccceECCEEEEEEcchhcCcc
Confidence 88899999999999997532 1235899999999998763
No 15
>PLN02533 probable purple acid phosphatase
Probab=99.90 E-value=3.3e-22 Score=181.96 Aligned_cols=208 Identities=18% Similarity=0.167 Sum_probs=129.3
Q ss_pred CCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCC
Q psy2930 10 INNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTP 89 (293)
Q Consensus 10 ~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (293)
..++||++++|+|... +.. ...+.+.+.+||+||++|||+.... ....|..+.+.+..+.
T Consensus 137 ~~~~~f~v~GDlG~~~-----~~~----------~tl~~i~~~~pD~vl~~GDl~y~~~--~~~~wd~f~~~i~~l~--- 196 (427)
T PLN02533 137 KFPIKFAVSGDLGTSE-----WTK----------STLEHVSKWDYDVFILPGDLSYANF--YQPLWDTFGRLVQPLA--- 196 (427)
T ss_pred CCCeEEEEEEeCCCCc-----ccH----------HHHHHHHhcCCCEEEEcCccccccc--hHHHHHHHHHHhhhHh---
Confidence 3679999999997522 111 1223345679999999999998543 2234444444344333
Q ss_pred CCceEEEecCCCCCCCCCCCCchhHHHHHHHhCC---------CCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHH
Q psy2930 90 DGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNS---------SMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRIS 160 (293)
Q Consensus 90 ~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~ 160 (293)
..+|+++++||||..............|.+.|.. ..+|.+..++++||+||+.... ....+|++
T Consensus 197 s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf~mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~~~-------~~~~~Q~~ 269 (427)
T PLN02533 197 SQRPWMVTHGNHELEKIPILHPEKFTAYNARWRMPFEESGSTSNLYYSFNVYGVHIIMLGSYTDF-------EPGSEQYQ 269 (427)
T ss_pred hcCceEEeCccccccccccccCcCccchhhcccCCccccCCCCCceEEEEECCEEEEEEeCCccc-------cCchHHHH
Confidence 4689999999999853210001111223222221 1368899999999999885411 23568999
Q ss_pred HHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCcc
Q psy2930 161 LISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPR 240 (293)
Q Consensus 161 ~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~ 240 (293)
||++.|+..... ...++|+++|+|++.......+... ....++.+.+++.+++++
T Consensus 270 WLe~dL~~~~r~----------~~pwiIv~~H~P~y~s~~~~~~~~~---------------~~~~r~~le~Ll~~~~Vd 324 (427)
T PLN02533 270 WLENNLKKIDRK----------TTPWVVAVVHAPWYNSNEAHQGEKE---------------SVGMKESMETLLYKARVD 324 (427)
T ss_pred HHHHHHHhhccc----------CCCEEEEEeCCCeeecccccCCcch---------------hHHHHHHHHHHHHHhCCc
Confidence 999999875320 2234788899999865421100000 011134678899999999
Q ss_pred EEEecCCCCCceeecc------CCCeeEEecccee
Q psy2930 241 LVIDGHTHNGCHKYHA------YGKVHEYTVPSFS 269 (293)
Q Consensus 241 lvl~GH~H~~~~~~~~------~~~~~~~~~~s~~ 269 (293)
++|+||.|.+.+...- ..+..+|++++..
T Consensus 325 lvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG 359 (427)
T PLN02533 325 LVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGG 359 (427)
T ss_pred EEEecceecccccccccCCccCCCCCEEEEeCCCc
Confidence 9999999998764211 1245667777644
No 16
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=99.89 E-value=4e-22 Score=159.90 Aligned_cols=157 Identities=39% Similarity=0.753 Sum_probs=115.9
Q ss_pred EEEecCCcCCCCCC---c----hhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcC
Q psy2930 16 IFIADTHLLGPFRG---H----WFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFST 88 (293)
Q Consensus 16 ~~iSD~H~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (293)
+++||+|++..... . ++.....++++.+.+...++..+||+||++||+++.+......+|.+..+++++++..
T Consensus 1 llvaDpql~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~ 80 (171)
T cd07384 1 LLVADPQILDETSYPPRPKIALRLTRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFL 80 (171)
T ss_pred CcccCccccCCCCCCCCchhhhHHHHHhHHHHHHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcc
Confidence 47899999976531 1 1444556778999999999999999999999999987766556788888888887742
Q ss_pred CC----CceEEEecCCCCCCCCCCCC-chhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHH
Q psy2930 89 PD----GTELHVVPGNHDMGFHYRLH-PYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLIS 163 (293)
Q Consensus 89 ~~----~~~~~~v~GNHD~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~ 163 (293)
.. ++|+++|+||||++...... ....++|+..|
T Consensus 81 ~~~~~~~~~~~~v~GNHD~g~~~~~~~~~~~~~f~~~f------------------------------------------ 118 (171)
T cd07384 81 PSNGLEDIPVYYVPGNHDIGYGEVISFPEVVDRFERYF------------------------------------------ 118 (171)
T ss_pred cccccCCceEEEECCccccCCCCccccHHHHHHHHhhh------------------------------------------
Confidence 22 68999999999997532111 12223333332
Q ss_pred HHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEE
Q psy2930 164 AKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVI 243 (293)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl 243 (293)
|+++|.|.+. ++++.+++++|
T Consensus 119 ------------------------i~l~H~p~~~-----------------------------------~~~~~~~~~~l 139 (171)
T cd07384 119 ------------------------ILLTHIPLYR-----------------------------------LLDTIKPVLIL 139 (171)
T ss_pred ------------------------eeEECCccHH-----------------------------------HHhccCceEEE
Confidence 6888988621 34445799999
Q ss_pred ecCCCCCceeeccC--CCeeEEeccceeccCC
Q psy2930 244 DGHTHNGCHKYHAY--GKVHEYTVPSFSWRNK 273 (293)
Q Consensus 244 ~GH~H~~~~~~~~~--~~~~~~~~~s~~~~~~ 273 (293)
|||+|..+...+.. +.++|++++|+||+.|
T Consensus 140 sGH~H~~~~~~~~~~~~~~~ei~v~S~s~~~~ 171 (171)
T cd07384 140 SGHDHDQCEVVHSSKAGSVREITVKSFSWRMG 171 (171)
T ss_pred eCcccCCeEEEecCCCCCceEEeeccchhhcc
Confidence 99999998877653 6899999999998764
No 17
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.87 E-value=5.4e-21 Score=162.25 Aligned_cols=208 Identities=17% Similarity=0.113 Sum_probs=123.8
Q ss_pred EEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCce
Q psy2930 14 KAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTE 93 (293)
Q Consensus 14 ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (293)
||+++||+|+.....+ .....+++.+.+++.++|+||++||+++... +....++.+.+. .++|
T Consensus 1 ki~~iSDlH~~~~~~~--------~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~-----~~~~~~~~l~~~----~~~p 63 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFD--------TEEMLETLAQYLKKQKIDHLHIAGDISNDFQ-----RSLPFIEKLQEL----KGIK 63 (239)
T ss_pred CEEEEEeecCCCCCCC--------HHHHHHHHHHHHHhcCCCEEEECCccccchh-----hHHHHHHHHHHh----cCCc
Confidence 6899999998522111 1112344556666779999999999998531 222334444442 3579
Q ss_pred EEEecCCCCCCCCCCCCchhHHHHHHHh----CCCCcceEEeCCEEEEEEeceecc---------------------C--
Q psy2930 94 LHVVPGNHDMGFHYRLHPYLNDRFSRAF----NSSMVKLLSIKGSYFVLINSMALE---------------------G-- 146 (293)
Q Consensus 94 ~~~v~GNHD~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~lds~~~~---------------------~-- 146 (293)
+++++||||.+... . ...+++.+ -......+..++++|++++.-.-. +
T Consensus 64 v~~v~GNHD~~~~~--~---~~~~~~~~~~~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (239)
T TIGR03729 64 VTFNAGNHDMLKDL--T---YEEIESNDSPLYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRI 138 (239)
T ss_pred EEEECCCCCCCCCC--C---HHHHHhccchhhhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeeccc
Confidence 99999999985221 1 12233221 111123334588999999741100 0
Q ss_pred -CCCCCCchhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhccccccccccc
Q psy2930 147 -DGCFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECI 225 (293)
Q Consensus 147 -~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 225 (293)
...........+++||++.|++. .+.++|+++|+||...... .+.+. + .|.......
T Consensus 139 ~~~~~~~~~~~~~l~~l~~~l~~~-------------~~~~~ivvtH~pP~~~~~~--~~~~~-~------~~~~~~~~~ 196 (239)
T TIGR03729 139 KRPMSDPERTAIVLKQLKKQLNQL-------------DNKQVIFVTHFVPHRDFIY--VPMDH-R------RFDMFNAFL 196 (239)
T ss_pred CCCCChHHHHHHHHHHHHHHHHhc-------------CCCCEEEEEcccchHHHhc--CCCCC-c------chhhhhhcc
Confidence 00112234578899999999765 4578999999999653210 00000 0 000000123
Q ss_pred CHHHHHHHHhhcCccEEEecCCCCCceeeccCCCeeEEecc
Q psy2930 226 SKESTDMLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVP 266 (293)
Q Consensus 226 ~~~~~~~ll~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~ 266 (293)
+.+.+.++++++++++++|||+|...... ..+++++++++
T Consensus 197 ~s~~l~~li~~~~v~~~i~GH~H~~~~~~-~i~~~~~~~~~ 236 (239)
T TIGR03729 197 GSQHFGQLLVKYEIKDVIFGHLHRRFGPL-TIGGTTYHNRP 236 (239)
T ss_pred ChHHHHHHHHHhCCCEEEECCccCCCCCE-EECCEEEEecC
Confidence 44678889999999999999999997432 23578888764
No 18
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.87 E-value=1.3e-20 Score=166.53 Aligned_cols=241 Identities=13% Similarity=0.062 Sum_probs=151.9
Q ss_pred CCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCcc-CChhhHHHHHHHHHhhh
Q psy2930 8 ESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQY-VGGEDFDNYVRRFYSLF 86 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~-~~~~~~~~~~~~~~~~~ 86 (293)
.-+..+||+.++|. |.....+ +...+.+.+..++.++|+|+-+||.++.|.. .++..|...++..-.--
T Consensus 22 ~~~~~l~F~~vGDw--G~g~~~Q--------~~VA~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~ 91 (394)
T PTZ00422 22 SVKAQLRFASLGNW--GTGSKQQ--------KLVASYLKQYAKNERVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEE 91 (394)
T ss_pred ccCCeEEEEEEecC--CCCchhH--------HHHHHHHHHHHHhCCCCEEEECCccccCCCCCccchhHHhhHhhhccCc
Confidence 34567899999999 4322111 1244556666677899999999999876663 34455655544443321
Q ss_pred cCCCCceEEEecCCCCCCCCCC--CCchhH-----------------HHHHHHhCCCCcceE----EeC-----------
Q psy2930 87 STPDGTELHVVPGNHDMGFHYR--LHPYLN-----------------DRFSRAFNSSMVKLL----SIK----------- 132 (293)
Q Consensus 87 ~~~~~~~~~~v~GNHD~~~~~~--~~~~~~-----------------~~~~~~~~~~~~~~~----~~~----------- 132 (293)
.....+|+++|+||||..-... ...... ....++.-+..+|.+ ..+
T Consensus 92 s~~L~~Pwy~vLGNHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~~yY~~~~~f~~~~~~~~~~~~~~ 171 (394)
T PTZ00422 92 SGDMQIPFFTVLGQADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPNYWYHYFTHFTDTSGPSLLKSGHK 171 (394)
T ss_pred chhhCCCeEEeCCcccccCCchhhhccccccccccccccccccccccccCCCccCCchhheeeeeeecccccccccccCC
Confidence 0015689999999999732111 100000 000111111123322 211
Q ss_pred --CEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCch
Q psy2930 133 --GSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAP 210 (293)
Q Consensus 133 --~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~ 210 (293)
.+.|+++||..+... .........+.+||+++|+.+.+ ..+++||+.|||++..+.. ++.
T Consensus 172 ~~~v~fifiDT~~l~~~-~~~~~~~~~~w~~L~~~L~~a~k-----------~a~WkIVvGHhPIySsG~h--g~~---- 233 (394)
T PTZ00422 172 DMSVAFIFIDTWILSSS-FPYKKVSERAWQDLKATLEYAPK-----------IADYIIVVGDKPIYSSGSS--KGD---- 233 (394)
T ss_pred CCEEEEEEEECchhccc-CCccccCHHHHHHHHHHHHhhcc-----------CCCeEEEEecCceeecCCC--CCC----
Confidence 279999999877642 22223356788999999975433 4579999999999876531 110
Q ss_pred hhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCCCceeeccCCCeeEEeccceeccC-------------CCCCc
Q psy2930 211 DIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRN-------------KNNPS 277 (293)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~-------------~~~p~ 277 (293)
..+ ...+..+|++++++++++||.|..+... .+++.++++++.+-.. ...+|
T Consensus 234 ------------~~L-~~~L~PLL~ky~VdlYisGHDH~lq~i~--~~gt~yIvSGaGs~~~~~~~~~~~~s~F~~~~~G 298 (394)
T PTZ00422 234 ------------SYL-SYYLLPLLKDAQVDLYISGYDRNMEVLT--DEGTAHINCGSGGNSGRKSIMKNSKSLFYSEDIG 298 (394)
T ss_pred ------------HHH-HHHHHHHHHHcCcCEEEEccccceEEec--CCCceEEEeCccccccCCCCCCCCCcceecCCCC
Confidence 011 1257899999999999999999998763 3478888888754211 13578
Q ss_pred eEEEEEecCCceee
Q psy2930 278 FLMGYVVENSSGVN 291 (293)
Q Consensus 278 f~~~~~~~~~~~~~ 291 (293)
|..++++.+.+.+.
T Consensus 299 F~~~~l~~~~l~~~ 312 (394)
T PTZ00422 299 FCIHELNAEGMVTK 312 (394)
T ss_pred EEEEEEecCEEEEE
Confidence 99999999988765
No 19
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.86 E-value=2.2e-20 Score=152.52 Aligned_cols=187 Identities=19% Similarity=0.184 Sum_probs=112.2
Q ss_pred EEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceE
Q psy2930 15 AIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTEL 94 (293)
Q Consensus 15 i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (293)
|+++||+|.+.. . +.. ..+++.+||+||++||+++.+.. ..+.. ++.+. ..++|+
T Consensus 1 i~~~sD~H~~~~-------~------~~~---~~~~~~~~D~vv~~GDl~~~~~~---~~~~~-~~~l~-----~~~~p~ 55 (188)
T cd07392 1 ILAISDIHGDVE-------K------LEA---IILKAEEADAVIVAGDITNFGGK---EAAVE-INLLL-----AIGVPV 55 (188)
T ss_pred CEEEEecCCCHH-------H------HHH---HHhhccCCCEEEECCCccCcCCH---HHHHH-HHHHH-----hcCCCE
Confidence 589999998321 1 111 33456799999999999997652 12222 12222 356899
Q ss_pred EEecCCCCCCCCCCCCchhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhhhcccCCC
Q psy2930 95 HVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDRE 174 (293)
Q Consensus 95 ~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 174 (293)
++++||||... ....+...........+.++++.|+++++.... .........+++++|+ +.+...
T Consensus 56 ~~v~GNHD~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~l~~~-~~l~~~----- 121 (188)
T cd07392 56 LAVPGNCDTPE-------ILGLLTSAGLNLHGKVVEVGGYTFVGIGGSNPT-PFNTPIELSEEEIVSD-GRLNNL----- 121 (188)
T ss_pred EEEcCCCCCHH-------HHHhhhcCcEecCCCEEEECCEEEEEeCCCCCC-CCCCccccCHHHHHHh-hhhhcc-----
Confidence 99999999731 011111111111235677899999999764311 1112234456788887 333321
Q ss_pred CCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCCCceee
Q psy2930 175 CPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKY 254 (293)
Q Consensus 175 ~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~ 254 (293)
+..+.|+++|+||.......... ....+...+.+++++++++++||||+|......
T Consensus 122 --------~~~~~ilv~H~pp~~~~~d~~~~----------------~~~~g~~~l~~li~~~~~~~~l~GH~H~~~~~~ 177 (188)
T cd07392 122 --------LAKNLILVTHAPPYGTAVDRVSG----------------GFHVGSKAIRKFIEERQPLLCICGHIHESRGVD 177 (188)
T ss_pred --------CCCCeEEEECCCCcCCcccccCC----------------CCccCCHHHHHHHHHhCCcEEEEecccccccee
Confidence 56789999999996531110000 001234578889999999999999999996432
Q ss_pred ccCCCeeEEec
Q psy2930 255 HAYGKVHEYTV 265 (293)
Q Consensus 255 ~~~~~~~~~~~ 265 (293)
..++..++++
T Consensus 178 -~~~~~~~~n~ 187 (188)
T cd07392 178 -KIGNTLVVNP 187 (188)
T ss_pred -eeCCeEEecC
Confidence 2345655554
No 20
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.86 E-value=2.9e-19 Score=148.41 Aligned_cols=200 Identities=13% Similarity=0.137 Sum_probs=122.6
Q ss_pred CceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCC
Q psy2930 11 NNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPD 90 (293)
Q Consensus 11 ~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (293)
..+||+++||+|- +. ...+++.+.+++.++|+||++||+++.+. ..+++..+.+.+. ..
T Consensus 3 ~~~kIl~iSDiHg-----n~---------~~le~l~~~~~~~~~D~vv~~GDl~~~g~--~~~~~~~~l~~l~-----~l 61 (224)
T cd07388 3 TVRYVLATSNPKG-----DL---------EALEKLVGLAPETGADAIVLIGNLLPKAA--KSEDYAAFFRILG-----EA 61 (224)
T ss_pred ceeEEEEEEecCC-----CH---------HHHHHHHHHHhhcCCCEEEECCCCCCCCC--CHHHHHHHHHHHH-----hc
Confidence 4689999999996 10 12233444555679999999999999763 1333444444443 24
Q ss_pred CceEEEecCCCCCCCCCCCCchhHHHHHHHhC------C---CCcceEEe-CCEEEEEEeceeccCCCCCCCchhHHHH-
Q psy2930 91 GTELHVVPGNHDMGFHYRLHPYLNDRFSRAFN------S---SMVKLLSI-KGSYFVLINSMALEGDGCFLCKPAQDRI- 159 (293)
Q Consensus 91 ~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~-~~~~~i~lds~~~~~~~~~~~~~~~~~l- 159 (293)
+.|+++|+||||... ...+++.++ . .-.....+ ++++|+++++.... ..+.+++++
T Consensus 62 ~~pv~~V~GNhD~~v--------~~~l~~~~~~~~~~p~~~~lh~~~~~~~g~~~~~GlGGs~~~-----~~e~sE~e~~ 128 (224)
T cd07388 62 HLPTFYVPGPQDAPL--------WEYLREAYNAELVHPEIRNVHETFAFWRGPYLVAGVGGEIAD-----EGEPEEHEAL 128 (224)
T ss_pred CCceEEEcCCCChHH--------HHHHHHHhcccccCccceecCCCeEEecCCeEEEEecCCcCC-----CCCcCHHHHh
Confidence 579999999999621 122333332 1 01134455 55899999654321 122344432
Q ss_pred ---HHHHH----HhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHH
Q psy2930 160 ---SLISA----KLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDM 232 (293)
Q Consensus 160 ---~~l~~----~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 232 (293)
.|+.+ .+... ...+.|+++|+||+..... ......+.+
T Consensus 129 ~~~~~~~~~~l~~~~~~-------------~~~~~VLv~H~PP~g~g~~----------------------h~GS~alr~ 173 (224)
T cd07388 129 RYPAWVAEYRLKALWEL-------------KDYRKVFLFHTPPYHKGLN----------------------EQGSHEVAH 173 (224)
T ss_pred hhhhhHHHHHHHHHHhC-------------CCCCeEEEECCCCCCCCCC----------------------ccCHHHHHH
Confidence 44332 33221 3568899999999765321 223457889
Q ss_pred HHhhcCccEEEecCCCCCceeeccCCCeeEEeccceeccCCCCCceEEEEEecCC
Q psy2930 233 LLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRNKNNPSFLMGYVVENS 287 (293)
Q Consensus 233 ll~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~~~~p~f~~~~~~~~~ 287 (293)
++++++|++++|||+|.... ..|++..++.++++. ..|.++++.+..
T Consensus 174 ~I~~~~P~l~i~GHih~~~~---~~g~t~vvNpg~~~~-----g~~a~i~~~~~~ 220 (224)
T cd07388 174 LIKTHNPLVVLVGGKGQKHE---LLGASWVVVPGDLSE-----GRYALLDLRARK 220 (224)
T ss_pred HHHHhCCCEEEEcCCceeEE---EeCCEEEECCCcccC-----CcEEEEEecCcc
Confidence 99999999999999993332 245666666655432 257888887543
No 21
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.85 E-value=4.5e-20 Score=152.33 Aligned_cols=175 Identities=17% Similarity=0.102 Sum_probs=106.0
Q ss_pred ceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCC
Q psy2930 12 NIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDG 91 (293)
Q Consensus 12 ~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (293)
+|||+++||+|++......+. ........+.+.++++..+||+||++||+++...... +.+ ..++.+.+.+. ..+
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~-~~~-~~~~~~~~~l~-~~~ 76 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEG--CEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTND-NST-SALDKAVSPMI-DRK 76 (199)
T ss_pred ceEEEEEeeecccCCCCCCCc--chhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCch-HHH-HHHHHHHHHHH-HcC
Confidence 589999999999876432110 0112234456777778889999999999999665321 112 22333333332 357
Q ss_pred ceEEEecCCCCCCCCCCCCchhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhhhccc
Q psy2930 92 TELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRK 171 (293)
Q Consensus 92 ~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~ 171 (293)
+|+++++|||| ..+.....|++||++.+.....
T Consensus 77 ~p~~~~~GNHD-----------------------------------------------~~g~l~~~ql~wL~~~l~~~~~ 109 (199)
T cd07383 77 IPWAATFGNHD-----------------------------------------------GYDWIRPSQIEWFKETSAALKK 109 (199)
T ss_pred CCEEEECccCC-----------------------------------------------CCCCCCHHHHHHHHHHHHHHhh
Confidence 89999999999 1122457889999999887531
Q ss_pred CCCCCccccCCCCCCCEEeeccCCCcCCCCCC--CCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCC
Q psy2930 172 DRECPKSMKLGSYSQPIILQHFPLYRESDEEC--SGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHN 249 (293)
Q Consensus 172 ~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~ 249 (293)
..+...+.++++|+|+........ ....... .+.. .....+...+..+++..+++++|+||+|.
T Consensus 110 --------~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~-~d~~-----~~~~~~~~~~~~~~~~~~v~~v~~GH~H~ 175 (199)
T cd07383 110 --------KYGKPIPSLAFFHIPLPEYREVWEGKGKVPGIN-NEKV-----CCPKINSGLFKALLERGDVKGVFCGHDHG 175 (199)
T ss_pred --------ccCCCCcceEEEecChHHHHhhhcccCCCCccC-Cccc-----CCCcCCcHHHHHHHHcCCeEEEEeCCCCC
Confidence 001457899999999865322110 0000000 0000 00112233556666777899999999999
Q ss_pred Cce
Q psy2930 250 GCH 252 (293)
Q Consensus 250 ~~~ 252 (293)
+..
T Consensus 176 ~~~ 178 (199)
T cd07383 176 NDF 178 (199)
T ss_pred cce
Confidence 754
No 22
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.85 E-value=6.6e-19 Score=158.10 Aligned_cols=130 Identities=15% Similarity=0.048 Sum_probs=90.7
Q ss_pred cceEE-eCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCC
Q psy2930 126 VKLLS-IKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECS 204 (293)
Q Consensus 126 ~~~~~-~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~ 204 (293)
||.|. .++++||+|||+...+ ...+.+.++|++||+++|+.. ++.++||++|||++......
T Consensus 293 YYSFd~~ggvrfIvLDSt~~~G--~~~G~L~eeQL~WLeqeLa~a-------------~~k~VVVf~HHPp~s~g~~~-- 355 (496)
T TIGR03767 293 YYTFDIAGGVRGISMDTTNRAG--GDEGSLGQTQFKWIKDTLRAS-------------SDTLFVLFSHHTSWSMVNEL-- 355 (496)
T ss_pred eEEEEeECCEEEEEEeCCCcCC--CcCCccCHHHHHHHHHHHhcC-------------CCCCEEEEECCCCccccccc--
Confidence 78888 8999999999986433 234567899999999999864 56789999999997643211
Q ss_pred CCCCchhhhhcccccccccccCHHHHHHHHhhc-CccEEEecCCCCCceeecc-------CCCeeEEeccceeccCCCCC
Q psy2930 205 GPDSAPDIEKRKKFRQRWECISKESTDMLLDYL-NPRLVIDGHTHNGCHKYHA-------YGKVHEYTVPSFSWRNKNNP 276 (293)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~-~~~lvl~GH~H~~~~~~~~-------~~~~~~~~~~s~~~~~~~~p 276 (293)
++... .+....+.+.+.++|+++ ++.++|+||+|......+. ..++.+|+++|.. .-+.
T Consensus 356 -~Dp~~---------pg~~~~n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSlv--dfPq- 422 (496)
T TIGR03767 356 -TDPVD---------PGEKRHLGTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASHI--DFPQ- 422 (496)
T ss_pred -ccccc---------ccccccCHHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEeccccc--cCCC-
Confidence 11000 001133445788899998 7999999999999854321 1278888887743 2222
Q ss_pred ceEEEEEec
Q psy2930 277 SFLMGYVVE 285 (293)
Q Consensus 277 ~f~~~~~~~ 285 (293)
-|++++|..
T Consensus 423 ~~Ri~Ei~~ 431 (496)
T TIGR03767 423 QGRIIELAD 431 (496)
T ss_pred CceEEEEEe
Confidence 488888874
No 23
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.83 E-value=1e-18 Score=152.82 Aligned_cols=188 Identities=21% Similarity=0.284 Sum_probs=117.7
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
|||++|||+|++..... ...+..++.+.++..+||+||++|||++.+. +.++....+.+. .. ....
T Consensus 1 ~~i~~isD~H~~~~~~~--------~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~---~~~~~~~~~~l~-~~--~~~~ 66 (301)
T COG1409 1 MRIAHISDLHLGALGVD--------SEELLEALLAAIEQLKPDLLVVTGDLTNDGE---PEEYRRLKELLA-RL--ELPA 66 (301)
T ss_pred CeEEEEecCcccccccc--------hHHHHHHHHHHHhcCCCCEEEEccCcCCCCC---HHHHHHHHHHHh-hc--cCCC
Confidence 68999999999751111 1124455667777889999999999999864 344444333333 11 3577
Q ss_pred eEEEecCCCCCCCCCCCCchhHHHHHHHhCCCCcceEE--e-CCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhhhc
Q psy2930 93 ELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLS--I-KGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCC 169 (293)
Q Consensus 93 ~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 169 (293)
|++++|||||.... ....|...+.....+... . ++++++++|+.... ...+.....|++|+++.|+..
T Consensus 67 ~~~~vpGNHD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~G~~~~~q~~~l~~~l~~~ 137 (301)
T COG1409 67 PVIVVPGNHDARVV------NGEAFSDQFFNRYAVLVGACSSGGWRVIGLDSSVPG---VPLGRLGAEQLDWLEEALAAA 137 (301)
T ss_pred ceEeeCCCCcCCch------HHHHhhhhhcccCcceEeeccCCceEEEEecCCCCC---CCCCEECHHHHHHHHHHHHhC
Confidence 89999999998531 123344444333111111 2 67899999998754 233457889999999999875
Q ss_pred ccCCCCCccccCCCC-CCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcC--ccEEEecC
Q psy2930 170 RKDRECPKSMKLGSY-SQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLN--PRLVIDGH 246 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~-~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~--~~lvl~GH 246 (293)
.. .. ...|+++|+|+...... .+ .....+......++...+ ++++|+||
T Consensus 138 ~~-----------~~~~~~v~~~hh~~~~~~~~----~~-------------~~~l~~~~~~~~~~~~~~~~v~~vl~GH 189 (301)
T COG1409 138 PE-----------RAKDTVVVLHHHPLPSPGTG----VD-------------RVALRDAGELLDVLIAHGNDVRLVLSGH 189 (301)
T ss_pred cc-----------ccCceEEEecCCCCCCCCCc----cc-------------eeeeecchhHHHHHHhcCCceEEEEeCc
Confidence 31 10 13355566665432211 00 012233345566777777 99999999
Q ss_pred CCCCc
Q psy2930 247 THNGC 251 (293)
Q Consensus 247 ~H~~~ 251 (293)
.|...
T Consensus 190 ~H~~~ 194 (301)
T COG1409 190 IHLAA 194 (301)
T ss_pred ccccc
Confidence 99993
No 24
>KOG1432|consensus
Probab=99.83 E-value=1e-18 Score=148.20 Aligned_cols=260 Identities=13% Similarity=0.027 Sum_probs=152.0
Q ss_pred CCCCceEEEEEecCCcCCCCCCchhHH-----H-HhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHH
Q psy2930 8 ESINNIKAIFIADTHLLGPFRGHWFDK-----L-RREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRR 81 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~ 81 (293)
..+++|||+++||+|++......+.+. . +.+....+.+.++++.++||+|+++||++.+-. ..+......++
T Consensus 49 ~~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~--t~Da~~sl~kA 126 (379)
T KOG1432|consen 49 REDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHS--TQDAATSLMKA 126 (379)
T ss_pred cCCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccc--cHhHHHHHHHH
Confidence 677889999999999998743332221 1 234556778888999999999999999999632 34556666777
Q ss_pred HHhhhcCCCCceEEEecCCCCCCCCCCCCchhHHHHHHHhCCC--------------------CcceEEeC---------
Q psy2930 82 FYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSS--------------------MVKLLSIK--------- 132 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~--------- 132 (293)
+.... +.+||+.++.||||-.-. .. +..+.++.... .++...+.
T Consensus 127 vaP~I--~~~IPwA~~lGNHDdes~--lt---r~ql~~~i~~lP~s~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~~ 199 (379)
T KOG1432|consen 127 VAPAI--DRKIPWAAVLGNHDDESD--LT---RLQLMKFISKLPYSLSQVNPPDGHMYIIDGFGNYNLQIEGAIDSELEN 199 (379)
T ss_pred hhhHh--hcCCCeEEEecccccccc--cC---HHHHHHHHhcCCCccccCCCcccceeeeecccceEEEeccCCCccccc
Confidence 77777 689999999999997421 11 22222222211 01111111
Q ss_pred --CEEEEEEeceeccCCC---CCCCchhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCC-CCC
Q psy2930 133 --GSYFVLINSMALEGDG---CFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEEC-SGP 206 (293)
Q Consensus 133 --~~~~i~lds~~~~~~~---~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~-~~~ 206 (293)
-..+++||+..++... ..+..+...|.+|++..-..-+. ....+ ...|-+++.|+|+........ .++
T Consensus 200 ~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~-----~~~~~-~P~p~La~~HIP~~E~~~~~~~tp~ 273 (379)
T KOG1432|consen 200 KSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKE-----PNSKY-NPQPGLAFFHIPLPEFLELESKTPL 273 (379)
T ss_pred CceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhc-----ccCcc-CCCCceEEEEcccHHHhhccCCCcc
Confidence 2567777777666443 23345677899999876533110 00111 222789999999954332110 000
Q ss_pred CCchhhhhccccccc--ccccCHHHHHHHHhhcCccEEEecCCCCCceeeccCCCeeEEeccceec-cCC--C-CCceEE
Q psy2930 207 DSAPDIEKRKKFRQR--WECISKESTDMLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSW-RNK--N-NPSFLM 280 (293)
Q Consensus 207 ~~~~~~~~~~~~~~~--~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~-~~~--~-~p~f~~ 280 (293)
. ..++|+ ....+...+..+.++.+++.||+||.|.+......-+.+...-.+.+.+ ..| + .++-+|
T Consensus 274 ~--------g~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDfC~~~k~~~wlCygGgaGyggYg~~gw~Rr~Rv 345 (379)
T KOG1432|consen 274 I--------GVFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDFCGELKGELWLCYGGGAGYGGYGIGGWERRARV 345 (379)
T ss_pred c--------ceeeccccccccccHHHHHHHhccCcceEEeccccccceecccCCeEEEEecCCCccCCcCcCCcccceEE
Confidence 0 012222 1223344666666688999999999999976542221222222222222 112 2 457788
Q ss_pred EEEecCCcee
Q psy2930 281 GYVVENSSGV 290 (293)
Q Consensus 281 ~~~~~~~~~~ 290 (293)
++++...-.|
T Consensus 346 ~e~d~~~~~I 355 (379)
T KOG1432|consen 346 FELDLNKDRI 355 (379)
T ss_pred EEcccccccc
Confidence 8888654333
No 25
>KOG1378|consensus
Probab=99.79 E-value=5.3e-18 Score=150.45 Aligned_cols=195 Identities=17% Similarity=0.232 Sum_probs=130.8
Q ss_pred CCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHH-HhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhh
Q psy2930 8 ESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAV-ALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLF 86 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~ 86 (293)
.++.+.++++++|+=...... . ..... ...++|+||+.|||.......+ ..|.++.+.++.+
T Consensus 143 ~~~~~~~~~i~GDlG~~~~~~-s--------------~~~~~~~~~k~d~vlhiGDlsYa~~~~n-~~wD~f~r~vEp~- 205 (452)
T KOG1378|consen 143 GQDSPTRAAIFGDMGCTEPYT-S--------------TLRNQEENLKPDAVLHIGDLSYAMGYSN-WQWDEFGRQVEPI- 205 (452)
T ss_pred CccCceeEEEEcccccccccc-c--------------hHhHHhcccCCcEEEEecchhhcCCCCc-cchHHHHhhhhhh-
Confidence 355779999999994422221 1 11111 1237999999999998644222 3455544444444
Q ss_pred cCCCCceEEEecCCCCCCCCCCCCchhHHHHHHHhCCC---------CcceEEeCCEEEEEEeceeccCCCCCCCchhHH
Q psy2930 87 STPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSS---------MVKLLSIKGSYFVLINSMALEGDGCFLCKPAQD 157 (293)
Q Consensus 87 ~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~ 157 (293)
...+|+.++.||||+.+.... .+..|...|..+ .+|.+..++++||+|+|-.+.+ ......
T Consensus 206 --As~vPymv~~GNHE~d~~~~~---~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~-----~~~~~~ 275 (452)
T KOG1378|consen 206 --ASYVPYMVCSGNHEIDWPPQP---CFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYYN-----FLKGTA 275 (452)
T ss_pred --hccCceEEecccccccCCCcc---cccccceeeccCCCcCCCCCceeEEEeeccEEEEEEecccccc-----ccccch
Confidence 368899999999999764221 122233333322 3789999999999998877651 135578
Q ss_pred HHHHHHHHhhhcccCCCCCccccCCC-CCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhh
Q psy2930 158 RISLISAKLKCCRKDRECPKSMKLGS-YSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDY 236 (293)
Q Consensus 158 ~l~~l~~~l~~~~~~~~~~~~~~~~~-~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~ 236 (293)
|.+||++.|+.... + ..++|++.|.|++...... -++|+.....+..+++++-+
T Consensus 276 QY~WL~~dL~~v~r-----------~~tPWlIv~~HrP~Y~S~~~~--------------~~reG~~~~~~~~LE~l~~~ 330 (452)
T KOG1378|consen 276 QYQWLERDLASVDR-----------KKTPWLIVQGHRPMYCSSNDA--------------HYREGEFESMREGLEPLFVK 330 (452)
T ss_pred HHHHHHHHHHHhcc-----------cCCCeEEEEecccceecCCch--------------hhccCcchhhHHHHHHHHHH
Confidence 99999999998643 2 4678999999998776521 11222222233578999999
Q ss_pred cCccEEEecCCCCCceee
Q psy2930 237 LNPRLVIDGHTHNGCHKY 254 (293)
Q Consensus 237 ~~~~lvl~GH~H~~~~~~ 254 (293)
++|+++|.||.|++.+..
T Consensus 331 ~~VDvvf~GHvH~YER~~ 348 (452)
T KOG1378|consen 331 YKVDVVFWGHVHRYERFC 348 (452)
T ss_pred hceeEEEeccceehhccc
Confidence 999999999999998743
No 26
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.79 E-value=6.5e-17 Score=130.83 Aligned_cols=215 Identities=17% Similarity=0.178 Sum_probs=133.4
Q ss_pred CceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccC--CCCccCChhhHHHHHHHHHhhhcC
Q psy2930 11 NNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLL--DEGQYVGGEDFDNYVRRFYSLFST 88 (293)
Q Consensus 11 ~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~--~~~~~~~~~~~~~~~~~~~~~~~~ 88 (293)
.+||++.+||+|.... ....+..+....++|+++++|||+ +.+... ...+.. .++.+.
T Consensus 2 ~~mkil~vtDlHg~~~--------------~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~---~~~~~~-~~e~l~-- 61 (226)
T COG2129 2 KKMKILAVTDLHGSED--------------SLKKLLNAAADIRADLLVIAGDLTYFHFGPKE---VAEELN-KLEALK-- 61 (226)
T ss_pred CcceEEEEeccccchH--------------HHHHHHHHHhhccCCEEEEecceehhhcCchH---HHHhhh-HHHHHH--
Confidence 4799999999999322 122344455567999999999999 655421 111110 133333
Q ss_pred CCCceEEEecCCCCCCCCCCCCchhHHHHHHHhCCC-CcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHH-HHHHHh
Q psy2930 89 PDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSS-MVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRIS-LISAKL 166 (293)
Q Consensus 89 ~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~-~l~~~l 166 (293)
..++|++++|||-|-. .......+ .+.. ...+..++++.|+++.... ..+...+.+..++++. .+++.+
T Consensus 62 ~~~~~v~avpGNcD~~-------~v~~~l~~-~~~~v~~~v~~i~~~~~~G~Ggsn-~tp~nt~~e~~E~~I~s~l~~~v 132 (226)
T COG2129 62 ELGIPVLAVPGNCDPP-------EVIDVLKN-AGVNVHGRVVEIGGYGFVGFGGSN-PTPFNTPREFSEDEIYSKLKSLV 132 (226)
T ss_pred hcCCeEEEEcCCCChH-------HHHHHHHh-cccccccceEEecCcEEEEecccC-CCCCCCccccCHHHHHHHHHHHH
Confidence 3689999999998862 11222222 3332 2488999999999974333 2222233444444443 333333
Q ss_pred hhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecC
Q psy2930 167 KCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGH 246 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH 246 (293)
+... +...|+++|.||+.+..+. + + +|.++.....++++++++|.+++|||
T Consensus 133 ~~~~-------------~~~~Il~~HaPP~gt~~d~--~--------~------g~~hvGS~~vr~~ieefqP~l~i~GH 183 (226)
T COG2129 133 KKAD-------------NPVNILLTHAPPYGTLLDT--P--------S------GYVHVGSKAVRKLIEEFQPLLGLHGH 183 (226)
T ss_pred hccc-------------CcceEEEecCCCCCccccC--C--------C------CccccchHHHHHHHHHhCCceEEEee
Confidence 3321 1112999999998876531 1 0 14567777899999999999999999
Q ss_pred CCCCceeeccCCCeeEEeccceeccCCCCCceEEEEEecCCce
Q psy2930 247 THNGCHKYHAYGKVHEYTVPSFSWRNKNNPSFLMGYVVENSSG 289 (293)
Q Consensus 247 ~H~~~~~~~~~~~~~~~~~~s~~~~~~~~p~f~~~~~~~~~~~ 289 (293)
+|+.+-. ...|++-.++-++++ ...|+++++..+-+.
T Consensus 184 IHEs~G~-d~iG~TivVNPG~~~-----~g~yA~i~l~~~~Vk 220 (226)
T COG2129 184 IHESRGI-DKIGNTIVVNPGPLG-----EGRYALIELEKEVVK 220 (226)
T ss_pred ecccccc-cccCCeEEECCCCcc-----CceEEEEEecCcEEE
Confidence 9986543 344455555544422 357999999887443
No 27
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.79 E-value=5.7e-18 Score=132.48 Aligned_cols=142 Identities=22% Similarity=0.305 Sum_probs=93.3
Q ss_pred EEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceE
Q psy2930 15 AIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTEL 94 (293)
Q Consensus 15 i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (293)
|+++||+|++........... .....+.+.+++.+||+|+++||+++.+.. .++....+.+.++. ...+|+
T Consensus 1 il~isD~Hl~~~~~~~~~~~~----~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~---~~~~~~~~~~~~l~--~~~~~~ 71 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALL----SLLDRLLAEIKALDPDLVVITGDLTQRGLP---EEFEEAREFLDALP--APLEPV 71 (144)
T ss_pred CeEeCccCCCCCcchhHHHHH----HHHHHHHHHHhccCCCEEEECCCCCCCCCH---HHHHHHHHHHHHcc--ccCCcE
Confidence 689999999876443211110 113345666677899999999999997652 34444333333332 122599
Q ss_pred EEecCCCCCCCCCCCCchhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhhhcccCCC
Q psy2930 95 HVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDRE 174 (293)
Q Consensus 95 ~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 174 (293)
++++||||.
T Consensus 72 ~~v~GNHD~----------------------------------------------------------------------- 80 (144)
T cd07400 72 LVVPGNHDV----------------------------------------------------------------------- 80 (144)
T ss_pred EEeCCCCeE-----------------------------------------------------------------------
Confidence 999999996
Q ss_pred CCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCCCceee
Q psy2930 175 CPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKY 254 (293)
Q Consensus 175 ~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~ 254 (293)
|+++|+|+........ . ...+...+.+++++++++++++||+|......
T Consensus 81 -------------iv~~Hhp~~~~~~~~~---~---------------~~~~~~~~~~~l~~~~~~~~l~GH~H~~~~~~ 129 (144)
T cd07400 81 -------------IVVLHHPLVPPPGSGR---E---------------RLLDAGDALKLLAEAGVDLVLHGHKHVPYVGN 129 (144)
T ss_pred -------------EEEecCCCCCCCcccc---c---------------cCCCHHHHHHHHHHcCCCEEEECCCCCcCeee
Confidence 6899999976543210 0 01145578889999999999999999998653
Q ss_pred c--cCCCeeEEeccc
Q psy2930 255 H--AYGKVHEYTVPS 267 (293)
Q Consensus 255 ~--~~~~~~~~~~~s 267 (293)
. ..+++..++++|
T Consensus 130 ~~~~~~~~~~~~aGs 144 (144)
T cd07400 130 ISNAGGGLVVIGAGT 144 (144)
T ss_pred ccCCCCCEEEEecCC
Confidence 1 123566666553
No 28
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=99.79 E-value=2.2e-18 Score=138.80 Aligned_cols=90 Identities=22% Similarity=0.439 Sum_probs=70.6
Q ss_pred EEEecCCcCCCCCC-chh--HHH---HhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCC
Q psy2930 16 IFIADTHLLGPFRG-HWF--DKL---RREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTP 89 (293)
Q Consensus 16 ~~iSD~H~~~~~~~-~~~--~~~---~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (293)
+.++|+|+-..... .+. .++ ..+.++.+.+..++...+||.|+++|||++++ +.++++|...+++|.+++...
T Consensus 1 l~vADPQi~d~~~~~~~~~~~rld~~~~D~YL~~~~~~~~~~l~Pd~V~fLGDLfd~~-w~~D~ef~~~~~RF~~if~~~ 79 (193)
T cd08164 1 LALGDPQIEGDHKIENYGFKGRLDLFGNDYFLGHIVSMMQFWLKPDAVVVLGDLFSSQ-WIDDEEFAKRADRYRRRFFGR 79 (193)
T ss_pred CcccCccccCCCCCCCCcccceehhhhhHHHHHHHHHHHHHhcCCCEEEEeccccCCC-cccHHHHHHHHHHHHHHhcCC
Confidence 36889999765521 121 233 36788999999999999999999999999874 678899999999999987322
Q ss_pred -----------------CCceEEEecCCCCCCCC
Q psy2930 90 -----------------DGTELHVVPGNHDMGFH 106 (293)
Q Consensus 90 -----------------~~~~~~~v~GNHD~~~~ 106 (293)
.+++++.|+||||+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~~ 113 (193)
T cd08164 80 NDWQVGNISLAARTFEDGKTPLINIAGNHDVGYG 113 (193)
T ss_pred cccccccccccccccccCCceEEEECCcccCCCC
Confidence 14899999999999764
No 29
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.79 E-value=2e-19 Score=143.96 Aligned_cols=192 Identities=20% Similarity=0.252 Sum_probs=97.3
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
|||+++||+|++..... . ..+.+.......++|+||++||+++.+.... ............. ..++
T Consensus 1 ~ri~~isD~H~~~~~~~---------~-~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~--~~~~~~~~~~~~~--~~~~ 66 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDS---------D-AFRKLDEIAAENKPDFIIFLGDLVDGGNPSE--EWRAQFWFFIRLL--NPKI 66 (200)
T ss_dssp EEEEEEEBBTTTHHHHC---------H-HHHHHHHHHHHTTTSEEEEESTSSSSSSHHH--HHHHHHHHHHHHH--HTTT
T ss_pred CeEEEEcCCCCCCcchh---------H-HHHHHHHHhccCCCCEEEeeccccccccccc--cchhhhccchhhh--hccc
Confidence 79999999999543221 1 2234555566789999999999999876322 1111110111222 3678
Q ss_pred eEEEecCCCCCCCCCCCCchhHHHHHHHhCCC---CcceEE-eCCEEEEEEeceeccCCCC----CCCchhHHHHHHHHH
Q psy2930 93 ELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSS---MVKLLS-IKGSYFVLINSMALEGDGC----FLCKPAQDRISLISA 164 (293)
Q Consensus 93 ~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~i~lds~~~~~~~~----~~~~~~~~~l~~l~~ 164 (293)
|+++++||||..... ............. ...... .+................. ........+..|+..
T Consensus 67 ~~~~~~GNHD~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (200)
T PF00149_consen 67 PVYFILGNHDYYSGN----SFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLL 142 (200)
T ss_dssp TEEEEE-TTSSHHHH----HHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHH
T ss_pred cccccccccccceec----cccccccccccccccccccccccCcceeeecccccccccccccccccccccchhccccccc
Confidence 999999999985310 0001111111110 011110 0111111111111010000 011122333334333
Q ss_pred HhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEe
Q psy2930 165 KLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVID 244 (293)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~ 244 (293)
.+... ...++|+++|+|+.......... .........+..+++..+++++|+
T Consensus 143 ~~~~~-------------~~~~~iv~~H~p~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~v~~~~~ 194 (200)
T PF00149_consen 143 LLEAK-------------NDDPVIVFTHHPPYSSSSDSSSY---------------GNESKGREALEELLKKYNVDLVLS 194 (200)
T ss_dssp HHHEE-------------EESEEEEEESSSSSTTSSSTHHH---------------SSEEEHHHHHHHHHHHTTCSEEEE
T ss_pred ccccc-------------cccceeEEEecCCCCcccccccc---------------chhhccHHHHHHHHhhCCCCEEEe
Confidence 33322 46789999999997654321000 001122456788999999999999
Q ss_pred cCCCCC
Q psy2930 245 GHTHNG 250 (293)
Q Consensus 245 GH~H~~ 250 (293)
||+|.+
T Consensus 195 GH~H~~ 200 (200)
T PF00149_consen 195 GHTHRY 200 (200)
T ss_dssp ESSSSE
T ss_pred CceecC
Confidence 999974
No 30
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.77 E-value=1.6e-17 Score=139.44 Aligned_cols=89 Identities=19% Similarity=0.354 Sum_probs=59.5
Q ss_pred EEEEEecCCcCCCCCCchh-HHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 14 KAIFIADTHLLGPFRGHWF-DKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 14 ri~~iSD~H~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
||+++||+|++........ .+........+.+.+.+.+.+||+|+++||+++.... ....+....+.+.++. ..++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~-~~~~~~~~~~~~~~~~--~~~~ 77 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNP-SPEALELLIEALRRLK--EAGI 77 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCC-CHHHHHHHHHHHHHHH--HCCC
Confidence 6999999999875432110 1122223345556666677899999999999996542 3344555555555543 2478
Q ss_pred eEEEecCCCCCCC
Q psy2930 93 ELHVVPGNHDMGF 105 (293)
Q Consensus 93 ~~~~v~GNHD~~~ 105 (293)
|+++++||||...
T Consensus 78 ~v~~~~GNHD~~~ 90 (223)
T cd00840 78 PVFIIAGNHDSPS 90 (223)
T ss_pred CEEEecCCCCCcc
Confidence 9999999999864
No 31
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.76 E-value=7.7e-18 Score=134.99 Aligned_cols=163 Identities=13% Similarity=0.027 Sum_probs=93.7
Q ss_pred EEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceE
Q psy2930 15 AIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTEL 94 (293)
Q Consensus 15 i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (293)
|+++||+|++......++ .+.+...++|+|+++||+++.+.. ..+.. +.... ..+.|+
T Consensus 1 ~~~iSDlH~~~~~~~~~~-------------~~~~~~~~~d~li~~GDi~~~~~~---~~~~~----~~~~~--~~~~~v 58 (166)
T cd07404 1 IQYLSDLHLEFEDNLADL-------------LNFPIAPDADILVLAGDIGYLTDA---PRFAP----LLLAL--KGFEPV 58 (166)
T ss_pred CceEccccccCccccccc-------------cccCCCCCCCEEEECCCCCCCcch---HHHHH----HHHhh--cCCccE
Confidence 578999999654322211 022345699999999999996542 11111 22222 356799
Q ss_pred EEecCCCCCCCCCCCCchhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhhhcccCCC
Q psy2930 95 HVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDRE 174 (293)
Q Consensus 95 ~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 174 (293)
++++||||.+ ++|++. +....+.....+.++|..+.
T Consensus 59 ~~v~GNHD~~-----------------------------~~~~G~------~~w~~~~~~~~~~~~~~~~d--------- 94 (166)
T cd07404 59 IYVPGNHEFY-----------------------------VRIIGT------TLWSDISLFGEAAARMRMND--------- 94 (166)
T ss_pred EEeCCCcceE-----------------------------EEEEee------ecccccCccchHHHHhCCCC---------
Confidence 9999999984 444443 11112211222333322222
Q ss_pred CCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCCCceee
Q psy2930 175 CPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKY 254 (293)
Q Consensus 175 ~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~ 254 (293)
-.+++||++||||....... ++.....+ ....+.+.+++++.+++++++||+|......
T Consensus 95 --------~~~~~vv~~HhpP~~~~~~~---~~~~~~~~----------~~~~~~l~~~~~~~~v~~~i~GH~H~~~~~~ 153 (166)
T cd07404 95 --------FRGKTVVVTHHAPSPLSLAP---QYGDSLVN----------AAFAVDLDDLILADPIDLWIHGHTHFNFDYR 153 (166)
T ss_pred --------CCCCEEEEeCCCCCccccCc---cccCCCcc----------hhhhhccHhHHhhcCCCEEEECCccccceEE
Confidence 23689999999997654321 11110000 0011235567777899999999999997653
Q ss_pred ccCCCeeEEecc
Q psy2930 255 HAYGKVHEYTVP 266 (293)
Q Consensus 255 ~~~~~~~~~~~~ 266 (293)
.+++..++.|
T Consensus 154 --~~g~~~~~np 163 (166)
T cd07404 154 --IGGTRVLSNQ 163 (166)
T ss_pred --ECCEEEEecC
Confidence 3477777654
No 32
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.75 E-value=3.6e-16 Score=139.19 Aligned_cols=146 Identities=12% Similarity=0.005 Sum_probs=88.4
Q ss_pred cceEE-eCCE--EEEEEeceeccCC----CCCCCchhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcC
Q psy2930 126 VKLLS-IKGS--YFVLINSMALEGD----GCFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRE 198 (293)
Q Consensus 126 ~~~~~-~~~~--~~i~lds~~~~~~----~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~ 198 (293)
+|.+. .+++ ++|+||+..+.+. +...+.+.++||+||++.|+.+. ...+.+|++|||+...
T Consensus 294 yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~------------a~~p~VVV~hHpPi~t 361 (492)
T TIGR03768 294 CYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQ------------ADGQLMIIAAHIPIAV 361 (492)
T ss_pred eeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCc------------CCCceEEEEeCCCccc
Confidence 56777 4656 9999999987654 44566788999999999999763 2456666655555432
Q ss_pred -CCCCCCCCCCchh--hhhcccccccccccCHHHHHHHHhhc-CccEEEecCCCCCceeec--c-----CCCeeEEeccc
Q psy2930 199 -SDEECSGPDSAPD--IEKRKKFRQRWECISKESTDMLLDYL-NPRLVIDGHTHNGCHKYH--A-----YGKVHEYTVPS 267 (293)
Q Consensus 199 -~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ll~~~-~~~lvl~GH~H~~~~~~~--~-----~~~~~~~~~~s 267 (293)
... .++.+.. ......++ +..+...+.++|.++ ++.++||||.|......+ + ..+..++.+.|
T Consensus 362 ~gi~---~md~w~~~~~~~~~~L~---n~~~~~eLlaLL~~hPnVla~LsGHvHrn~v~a~~~p~~~~pe~gFWeveTaS 435 (492)
T TIGR03768 362 SPIG---SEMEWWLGAADANPDLQ---NAVSLTGLVTTLQKYPNLLMWIAGHRHLNTVKAFPSPDPARPEYGFWQVETAS 435 (492)
T ss_pred CCcc---chhhhcccccccccccc---ccccHHHHHHHHhcCCCeEEEEcCCcccccccccCCCCCCCCcCceEEEeehh
Confidence 211 1111110 00000011 122223678899988 688999999998876532 2 23677777765
Q ss_pred eeccCCCCCceEEEEEec-CCceeee
Q psy2930 268 FSWRNKNNPSFLMGYVVE-NSSGVNL 292 (293)
Q Consensus 268 ~~~~~~~~p~f~~~~~~~-~~~~~~~ 292 (293)
.. .- +.-|++++|.. ...+|+|
T Consensus 436 l~--Df-PQq~R~~Ei~~n~d~tvsi 458 (492)
T TIGR03768 436 LR--DF-PQQFRTFEIYLNSDDTVSI 458 (492)
T ss_pred hc--cc-hhhceEEEEEeCCCCeEEE
Confidence 43 21 12588888873 4455544
No 33
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.75 E-value=3.1e-17 Score=141.54 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=53.5
Q ss_pred CCCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhh
Q psy2930 7 PESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLF 86 (293)
Q Consensus 7 ~~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~ 86 (293)
++..+++||+++||+|++...... ..+.+.+.+++.+||+|+++||+++.+.... +....+.+.++.
T Consensus 44 ~~~~~~~rI~~lSDlH~~~~~~~~----------~l~~~v~~i~~~~pDlVli~GD~~d~~~~~~---~~~~~~~L~~L~ 110 (271)
T PRK11340 44 KDNAAPFKILFLADLHYSRFVPLS----------LISDAIALGIEQKPDLILLGGDYVLFDMPLN---FSAFSDVLSPLA 110 (271)
T ss_pred CCCCCCcEEEEEcccCCCCcCCHH----------HHHHHHHHHHhcCCCEEEEccCcCCCCcccc---HHHHHHHHHHHh
Confidence 344567999999999995432111 1223455667789999999999998433222 223333333332
Q ss_pred cCCCCceEEEecCCCCCCC
Q psy2930 87 STPDGTELHVVPGNHDMGF 105 (293)
Q Consensus 87 ~~~~~~~~~~v~GNHD~~~ 105 (293)
...|+++|+||||++.
T Consensus 111 ---~~~pv~~V~GNHD~~~ 126 (271)
T PRK11340 111 ---ECAPTFACFGNHDRPV 126 (271)
T ss_pred ---hcCCEEEecCCCCccc
Confidence 2368999999999853
No 34
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.74 E-value=7.7e-16 Score=136.90 Aligned_cols=89 Identities=28% Similarity=0.487 Sum_probs=57.5
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHH-HHhhhcCCCC
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRR-FYSLFSTPDG 91 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 91 (293)
|||+|+||+|+|....+.++... -..+.+.+.+.+.+.+||+||++||+++........... .... +.+.+. ..+
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~--~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~-~~~~~l~~~L~-~~g 76 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNY--QLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMN-FVREKIFDLLK-EAG 76 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHH--HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHH-HHHHHHHHHHH-HCC
Confidence 79999999999865433332211 113444556666778999999999999975433322222 2222 233332 358
Q ss_pred ceEEEecCCCCCCC
Q psy2930 92 TELHVVPGNHDMGF 105 (293)
Q Consensus 92 ~~~~~v~GNHD~~~ 105 (293)
+|+++++||||...
T Consensus 77 i~v~~I~GNHD~~~ 90 (340)
T PHA02546 77 ITLHVLVGNHDMYY 90 (340)
T ss_pred CeEEEEccCCCccc
Confidence 99999999999854
No 35
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.71 E-value=1.8e-16 Score=133.09 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=52.2
Q ss_pred ceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCC
Q psy2930 12 NIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDG 91 (293)
Q Consensus 12 ~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (293)
+|||+++||+|++...... ..+.+.+.+++.+||+|+++||+++.+.... ....+.+.+ + ..+
T Consensus 1 ~~~i~~~sDlH~~~~~~~~----------~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~----~~~~~~l~~-l--~~~ 63 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRE----------RLERLVEKINALKPDLVVLTGDLVDGSVDVL----ELLLELLKK-L--KAP 63 (223)
T ss_pred CCEEEEEeecCCCccCCHH----------HHHHHHHHHhccCCCEEEEcCcccCCcchhh----HHHHHHHhc-c--CCC
Confidence 4899999999996553211 1233555666789999999999999765321 122222332 2 246
Q ss_pred ceEEEecCCCCCCC
Q psy2930 92 TELHVVPGNHDMGF 105 (293)
Q Consensus 92 ~~~~~v~GNHD~~~ 105 (293)
.|+++++||||...
T Consensus 64 ~~v~~v~GNHD~~~ 77 (223)
T cd07385 64 LGVYAVLGNHDYYS 77 (223)
T ss_pred CCEEEECCCccccc
Confidence 79999999999864
No 36
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.70 E-value=1.4e-16 Score=126.01 Aligned_cols=155 Identities=21% Similarity=0.267 Sum_probs=94.7
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
|||+++||+|++.. .+ +++.+.+ .+||+|+++||+++. .+.++.+++ +
T Consensus 1 Mki~~~sD~H~~~~-------------~~-~~~~~~~--~~~d~vi~~GDi~~~---------~~~~~~~~~-------~ 48 (156)
T PF12850_consen 1 MKIAVISDLHGNLD-------------AL-EAVLEYI--NEPDFVIILGDIFDP---------EEVLELLRD-------I 48 (156)
T ss_dssp EEEEEEE--TTTHH-------------HH-HHHHHHH--TTESEEEEES-SCSH---------HHHHHHHHH-------H
T ss_pred CEEEEEeCCCCChh-------------HH-HHHHHHh--cCCCEEEECCCchhH---------HHHHHHHhc-------C
Confidence 89999999999221 11 2233333 469999999999981 233344433 2
Q ss_pred eEEEecCCCCCCCCCCCCchhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhhhcccC
Q psy2930 93 ELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKD 172 (293)
Q Consensus 93 ~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 172 (293)
|+++|.||||... |.+..... . +.......
T Consensus 49 ~~~~v~GNHD~~~-----------~~~~~~~~--~----------------------------------~~~~~~~~--- 78 (156)
T PF12850_consen 49 PVYVVRGNHDNWA-----------FPNENDEE--Y----------------------------------LLDALRLT--- 78 (156)
T ss_dssp EEEEE--CCHSTH-----------HHSEECTC--S----------------------------------SHSEEEEE---
T ss_pred CEEEEeCCccccc-----------chhhhhcc--c----------------------------------cccceeee---
Confidence 8999999999631 22111111 0 00111100
Q ss_pred CCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCCCce
Q psy2930 173 RECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCH 252 (293)
Q Consensus 173 ~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~ 252 (293)
.....|+++|.+++.... ......+++...+++++++||+|.+..
T Consensus 79 ----------~~~~~i~~~H~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~GH~H~~~~ 123 (156)
T PF12850_consen 79 ----------IDGFKILLSHGHPYDVQW-------------------------DPAELREILSRENVDLVLHGHTHRPQV 123 (156)
T ss_dssp ----------ETTEEEEEESSTSSSSTT-------------------------THHHHHHHHHHTTSSEEEESSSSSEEE
T ss_pred ----------ecCCeEEEECCCCccccc-------------------------ChhhhhhhhcccCCCEEEcCCcccceE
Confidence 345788999987754221 123455777788999999999999987
Q ss_pred eeccCCCeeEEeccceeccCC-CCCceEEEEEecC
Q psy2930 253 KYHAYGKVHEYTVPSFSWRNK-NNPSFLMGYVVEN 286 (293)
Q Consensus 253 ~~~~~~~~~~~~~~s~~~~~~-~~p~f~~~~~~~~ 286 (293)
.. .+++..++.+|++.... ..++|.+++++.+
T Consensus 124 ~~--~~~~~~~~~Gs~~~~~~~~~~~~~i~~~~~~ 156 (156)
T PF12850_consen 124 FK--IGGIHVINPGSIGGPRHGDQSGYAILDIEDK 156 (156)
T ss_dssp EE--ETTEEEEEE-GSSS-SSSSSEEEEEEEETTT
T ss_pred EE--ECCEEEEECCcCCCCCCCCCCEEEEEEEecC
Confidence 54 34899999999887664 4789999999764
No 37
>KOG2679|consensus
Probab=99.70 E-value=4.6e-16 Score=128.05 Aligned_cols=241 Identities=15% Similarity=0.159 Sum_probs=140.4
Q ss_pred CCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCC-Ccc-CChhhHHHHHHHHHhh
Q psy2930 8 ESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDE-GQY-VGGEDFDNYVRRFYSL 85 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~-~~~-~~~~~~~~~~~~~~~~ 85 (293)
++++.++|++|.|+= . .+.|.... .......+.+++..|+||-+||.+.. |.. ..+..+.+.++.+-..
T Consensus 39 ~~dgslsflvvGDwG--r--~g~~nqs~-----va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~ 109 (336)
T KOG2679|consen 39 KSDGSLSFLVVGDWG--R--RGSFNQSQ-----VALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTA 109 (336)
T ss_pred CCCCceEEEEEcccc--c--CCchhHHH-----HHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHhhhhhcccC
Confidence 677889999999993 2 22332110 11112334467899999999997764 332 2334454443333221
Q ss_pred hcCCCCceEEEecCCCCCCCCCCCCch-hHHHHHHHhCCCCcce-----E--EeCCEEEEEEeceeccCCCCCC------
Q psy2930 86 FSTPDGTELHVVPGNHDMGFHYRLHPY-LNDRFSRAFNSSMVKL-----L--SIKGSYFVLINSMALEGDGCFL------ 151 (293)
Q Consensus 86 ~~~~~~~~~~~v~GNHD~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~--~~~~~~~i~lds~~~~~~~~~~------ 151 (293)
- ....|+|.|.||||+.-..+.+.. ........+-....++ . ..-+..+.++++..++......
T Consensus 110 p--SLQkpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c~rsf~~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~P 187 (336)
T KOG2679|consen 110 P--SLQKPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWICPRSFYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLP 187 (336)
T ss_pred c--ccccchhhhccCccccCchhhhhhHHHHhhccceecccHHhhcceeeeeeccccccchhhheecccccccccccCCh
Confidence 1 234599999999998432111111 0111111111111111 1 1223455555555554332111
Q ss_pred -CchhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHH
Q psy2930 152 -CKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKEST 230 (293)
Q Consensus 152 -~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (293)
......++.||+..|+++ .++++||+.|||+...+. .+++. .|. ..+
T Consensus 188 R~~~~~~~l~~le~~L~~S-------------~a~wkiVvGHh~i~S~~~--HG~T~----------------eL~-~~L 235 (336)
T KOG2679|consen 188 RVKYLRALLSWLEVALKAS-------------RAKWKIVVGHHPIKSAGH--HGPTK----------------ELE-KQL 235 (336)
T ss_pred HHHHHHHHHHHHHHHHHHh-------------hcceEEEecccceehhhc--cCChH----------------HHH-HHH
Confidence 123467888999999987 678999999999965442 22221 121 257
Q ss_pred HHHHhhcCccEEEecCCCCCceeeccCCCeeEEecccee--ccCC---------------CCCceEEEEEecCCceee
Q psy2930 231 DMLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFS--WRNK---------------NNPSFLMGYVVENSSGVN 291 (293)
Q Consensus 231 ~~ll~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~--~~~~---------------~~p~f~~~~~~~~~~~~~ 291 (293)
..||++.+++++++||+|.-+....+..++-.++.++.+ |+-+ ...||..+++......|.
T Consensus 236 lPiL~~n~VdlY~nGHDHcLQhis~~e~~iqf~tSGagSkaw~g~~~~~~~~p~~lkF~YdgqGfmsv~is~~e~~vv 313 (336)
T KOG2679|consen 236 LPILEANGVDLYINGHDHCLQHISSPESGIQFVTSGAGSKAWRGTDHNPEVNPKELKFYYDGQGFMSVEISHSEARVV 313 (336)
T ss_pred HHHHHhcCCcEEEecchhhhhhccCCCCCeeEEeeCCcccccCCCccCCccChhheEEeeCCCceEEEEEecceeEEE
Confidence 899999999999999999988765545577777776654 4331 123777777776665553
No 38
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.69 E-value=6.7e-15 Score=124.98 Aligned_cols=226 Identities=15% Similarity=0.156 Sum_probs=113.6
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHH--hcCCCEEEEcCccCCCCcc--CChhhHHHHHHHHHhhhcC
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVA--LHQPEHIFVLGDLLDEGQY--VGGEDFDNYVRRFYSLFST 88 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pd~vi~~GDl~~~~~~--~~~~~~~~~~~~~~~~~~~ 88 (293)
||++++||+|++..... ..+++.+.++ ..+||.|+++||+++.... ..........+.+.++.
T Consensus 1 M~i~~iSDlHl~~~~~~-----------~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~-- 67 (241)
T PRK05340 1 MPTLFISDLHLSPERPA-----------ITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALS-- 67 (241)
T ss_pred CcEEEEeecCCCCCChh-----------HHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHH--
Confidence 78999999999754321 1122333332 3589999999999985321 11122333344445444
Q ss_pred CCCceEEEecCCCCCCCCCCCCchhHHHHHHHhCC---CCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHH
Q psy2930 89 PDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNS---SMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAK 165 (293)
Q Consensus 89 ~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~ 165 (293)
..++|+++++||||.... ..|.+..+. +....+.++|.++++. +|+...... ...+++.+.
T Consensus 68 ~~g~~v~~v~GNHD~~~~--------~~~~~~~g~~~l~~~~~~~~~g~~i~l~-----HGd~~~~~d---~~y~~~r~~ 131 (241)
T PRK05340 68 DSGVPCYFMHGNRDFLLG--------KRFAKAAGMTLLPDPSVIDLYGQRVLLL-----HGDTLCTDD---KAYQRFRRK 131 (241)
T ss_pred HcCCeEEEEeCCCchhhh--------HHHHHhCCCEEeCCcEEEEECCEEEEEE-----CCcccccCC---HHHHHHHHH
Confidence 456899999999997431 233333331 1245677888888887 455432222 222222222
Q ss_pred hhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEec
Q psy2930 166 LKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDG 245 (293)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~G 245 (293)
++. ...+.+.|.++......-....... +..+...-...+.....+.+.+++++++++++++|
T Consensus 132 ~r~----------------~~~~~~~~~~p~~~~~~ia~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G 194 (241)
T PRK05340 132 VRN----------------PWLQWLFLALPLSIRLRIAAKMRAK-SKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHG 194 (241)
T ss_pred HhC----------------HHHHHHHHhCCHHHHHHHHHHHHHH-HHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEEC
Confidence 211 1111222222211100000000000 00000000000122234567788889999999999
Q ss_pred CCCCCceeeccCC--CeeEEeccceeccCCCCCceEEEEEecCCcee
Q psy2930 246 HTHNGCHKYHAYG--KVHEYTVPSFSWRNKNNPSFLMGYVVENSSGV 290 (293)
Q Consensus 246 H~H~~~~~~~~~~--~~~~~~~~s~~~~~~~~p~f~~~~~~~~~~~~ 290 (293)
|+|.+.......+ +...++.|+ |.. ...++.+++++.++
T Consensus 195 H~H~~~~~~~~~~~~~~~~~~lgd--w~~----~~~~~~~~~~~~~~ 235 (241)
T PRK05340 195 HTHRPAIHQLQAGGQPATRIVLGD--WHE----QGSVLKVDADGVEL 235 (241)
T ss_pred cccCcceeeccCCCcceEEEEeCC--CCC----CCeEEEEECCceEE
Confidence 9999865432222 235677776 422 24445666666543
No 39
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.65 E-value=2.9e-14 Score=115.18 Aligned_cols=211 Identities=18% Similarity=0.245 Sum_probs=114.6
Q ss_pred ceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHH---------------
Q psy2930 12 NIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFD--------------- 76 (293)
Q Consensus 12 ~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~--------------- 76 (293)
+-+|+.+||+|- +-.+.+.+...+...+||+|+++|||+...- ..++|.
T Consensus 5 ~~kilA~s~~~g--------------~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a--~~~e~~~a~~~~r~p~k~~i~ 68 (255)
T PF14582_consen 5 VRKILAISNFRG--------------DFELLERLVEVIPEKGPDAVVFVGDLLKAEA--RSDEYERAQEEQREPDKSEIN 68 (255)
T ss_dssp --EEEEEE--TT---------------HHHHHHHHHHHHHHT-SEEEEES-SS-TCH--HHHHHHHHHHTT----THHHH
T ss_pred chhheeecCcch--------------HHHHHHHHHhhccccCCCEEEEeccccccch--hhhHHHHHhhhccCcchhhhh
Confidence 458999999987 1124455677777789999999999987432 122333
Q ss_pred -------HHHHHHHhhhcCCCCceEEEecCCCCCCCCCCCCchhHHHHHHHhCC----CC-----cceEEeCC-EEEEEE
Q psy2930 77 -------NYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNS----SM-----VKLLSIKG-SYFVLI 139 (293)
Q Consensus 77 -------~~~~~~~~~~~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~-~~~i~l 139 (293)
+.++.|-..++ ..++|+++||||||... ...|+..+.. +. ...+.++| +.+++.
T Consensus 69 ~e~~~~~e~~~~ff~~L~-~~~~p~~~vPG~~Dap~--------~~~lr~a~~~e~v~p~~~~vH~sf~~~~g~y~v~G~ 139 (255)
T PF14582_consen 69 EEECYDSEALDKFFRILG-ELGVPVFVVPGNMDAPE--------RFFLREAYNAEIVTPHIHNVHESFFFWKGEYLVAGM 139 (255)
T ss_dssp HHHHHHHHHHHHHHHHHH-CC-SEEEEE--TTS-SH--------HHHHHHHHHCCCC-TTEEE-CTCEEEETTTEEEEEE
T ss_pred hhhhhhHHHHHHHHHHHH-hcCCcEEEecCCCCchH--------HHHHHHHhccceeccceeeeeeeecccCCcEEEEec
Confidence 22344444444 57999999999999852 2334444442 21 13355554 888888
Q ss_pred eceeccCCCCCCC---chhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCC-CcCCCCCCCCCCCchhhhhc
Q psy2930 140 NSMALEGDGCFLC---KPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPL-YRESDEECSGPDSAPDIEKR 215 (293)
Q Consensus 140 ds~~~~~~~~~~~---~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~-~~~~~~~~~~~~~~~~~~~~ 215 (293)
.+..........- -+.. ..++..+.++.. +..+.|++.|-|| ...+.
T Consensus 140 GGeI~~~~~~~~~~LrYP~w-eaey~lk~l~el-------------k~~r~IlLfhtpPd~~kg~--------------- 190 (255)
T PF14582_consen 140 GGEITDDQREEEFKLRYPAW-EAEYSLKFLREL-------------KDYRKILLFHTPPDLHKGL--------------- 190 (255)
T ss_dssp -SEEESSS-BCSSS-EEEHH-HHHHHHGGGGGC-------------TSSEEEEEESS-BTBCTCT---------------
T ss_pred CccccCCCccccccccchHH-HHHHHHHHHHhc-------------ccccEEEEEecCCccCCCc---------------
Confidence 6665443321100 0111 222223444433 4557899999999 21110
Q ss_pred ccccccccccCHHHHHHHHhhcCccEEEecCCCCCceeeccCCCeeEEeccceeccCCCCCceEEEEEecCCce
Q psy2930 216 KKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRNKNNPSFLMGYVVENSSG 289 (293)
Q Consensus 216 ~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~~~~p~f~~~~~~~~~~~ 289 (293)
.....+....+++.+++.+|+|||.|.....- ..|.+-+++-+|++. .+|.++++..+.+.
T Consensus 191 -------~h~GS~~V~dlIk~~~P~ivl~Ghihe~~~~e-~lG~TlVVNPGsL~~-----G~yAvI~l~~~~v~ 251 (255)
T PF14582_consen 191 -------IHVGSAAVRDLIKTYNPDIVLCGHIHESHGKE-SLGKTLVVNPGSLAE-----GDYAVIDLEQDKVE 251 (255)
T ss_dssp -------BTTSBHHHHHHHHHH--SEEEE-SSS-EE--E-EETTEEEEE--BGGG-----TEEEEEETTTTEEE
T ss_pred -------ccccHHHHHHHHHhcCCcEEEecccccchhhH-HhCCEEEecCccccc-----CceeEEEecccccc
Confidence 12334578999999999999999999987321 234677777778774 37999988776554
No 40
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.65 E-value=5.3e-15 Score=114.57 Aligned_cols=203 Identities=14% Similarity=0.131 Sum_probs=109.5
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHH--HHHHHHHHHHHhc-CCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCC
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREW--QMYKTFQTAVALH-QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTP 89 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (293)
|||..+||+|+..... +.+..+...| +-......+.... .-|.|++.|||.....-. +..+.|+-+- .-
T Consensus 1 M~iyaiaDLHLa~~~p-KpM~vFGe~W~gh~ekI~k~W~~~v~~eDiVllpGDiSWaM~l~------ea~~Dl~~i~-~L 72 (230)
T COG1768 1 MRIYAIADLHLALGVP-KPMEVFGEPWSGHHEKIKKHWRSKVSPEDIVLLPGDISWAMRLE------EAEEDLRFIG-DL 72 (230)
T ss_pred CceeeeehhhHhhCCC-CceeecCCcccCchHHHHHHHHhcCChhhEEEecccchhheech------hhhhhhhhhh-cC
Confidence 6899999999975443 1122221111 1111122333334 448999999999865411 1122222222 12
Q ss_pred CCceEEEecCCCCCCCCCCCCchhHHHHHHHhCCCC---cceEEeCCEEEEEEeceeccCCCC-CCCchhH----HHHHH
Q psy2930 90 DGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSM---VKLLSIKGSYFVLINSMALEGDGC-FLCKPAQ----DRISL 161 (293)
Q Consensus 90 ~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~lds~~~~~~~~-~~~~~~~----~~l~~ 161 (293)
+|+ .+++.||||++++ +..+..+.+.+.. +..+...++.+++.-.=....... .+.+.++ +.+..
T Consensus 73 PG~-K~m~rGNHDYWw~------s~skl~n~lp~~l~~~n~~f~l~n~aI~G~RgW~s~~~~~e~~te~Deki~~RE~~R 145 (230)
T COG1768 73 PGT-KYMIRGNHDYWWS------SISKLNNALPPILFYLNNGFELLNYAIVGVRGWDSPSFDSEPLTEQDEKIFLREIGR 145 (230)
T ss_pred CCc-EEEEecCCccccc------hHHHHHhhcCchHhhhccceeEeeEEEEEeecccCCCCCcCccchhHHHHHHHHHHH
Confidence 454 5899999999874 2455666666541 234556665555541111000111 1122222 23334
Q ss_pred HHHHhhh-cccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCcc
Q psy2930 162 ISAKLKC-CRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPR 240 (293)
Q Consensus 162 l~~~l~~-~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~ 240 (293)
|+..+.+ .++ .....|||+|+|++...... .-+.++|++..+.
T Consensus 146 Lrlsa~a~l~k-----------~~~~fivM~HYPP~s~~~t~-------------------------~~~sevlee~rv~ 189 (230)
T COG1768 146 LRLSADAALPK-----------GVSKFIVMTHYPPFSDDGTP-------------------------GPFSEVLEEGRVS 189 (230)
T ss_pred HHHHHHHhccc-----------CcCeEEEEEecCCCCCCCCC-------------------------cchHHHHhhccee
Confidence 4432221 111 45678999999998765421 1357888899999
Q ss_pred EEEecCCCCCceee---ccCCCeeEEecc
Q psy2930 241 LVIDGHTHNGCHKY---HAYGKVHEYTVP 266 (293)
Q Consensus 241 lvl~GH~H~~~~~~---~~~~~~~~~~~~ 266 (293)
.++.||.|.....- ...+|+..+.+.
T Consensus 190 ~~lyGHlHgv~~p~~~~s~v~Gi~y~Lva 218 (230)
T COG1768 190 KCLYGHLHGVPRPNIGFSNVRGIEYMLVA 218 (230)
T ss_pred eEEeeeccCCCCCCCCcccccCceEEEEe
Confidence 99999999986421 112366555553
No 41
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=99.62 E-value=5.3e-14 Score=126.62 Aligned_cols=92 Identities=16% Similarity=0.231 Sum_probs=60.7
Q ss_pred CceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhh-----
Q psy2930 11 NNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSL----- 85 (293)
Q Consensus 11 ~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~----- 85 (293)
..|||+|+||+|+|....... +....+...+.+.+.+.+.++|+||++|||++...++ .+......+.+++.
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~--r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps-~~~~~~~~~~lr~~~~g~~ 78 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPV--RGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPS-RKSLYQVLRSLRLYCLGDK 78 (405)
T ss_pred CceEEEEEcCCCCCCccCCch--hhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCC-HHHHHHHHHHHHHhhccCC
Confidence 569999999999985433211 1111233445566666778999999999999976653 34444444555431
Q ss_pred ------hcC--------------------CCCceEEEecCCCCCCC
Q psy2930 86 ------FST--------------------PDGTELHVVPGNHDMGF 105 (293)
Q Consensus 86 ------~~~--------------------~~~~~~~~v~GNHD~~~ 105 (293)
+.. ..++||++|.||||...
T Consensus 79 p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 79 PCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred ccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 100 14799999999999853
No 42
>KOG3770|consensus
Probab=99.62 E-value=1.4e-14 Score=131.87 Aligned_cols=242 Identities=16% Similarity=0.191 Sum_probs=149.0
Q ss_pred CCCCceEEEEEecCCcCCCCCC---------------------------chhHH-HH-hHHHHHHHHHHHHHh-cC-CCE
Q psy2930 8 ESINNIKAIFIADTHLLGPFRG---------------------------HWFDK-LR-REWQMYKTFQTAVAL-HQ-PEH 56 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~~~~~---------------------------~~~~~-~~-~~~~~~~~~~~~~~~-~~-pd~ 56 (293)
+++..+||+|++|+|....... .|-+- .+ ..+.+.++..+.+++ .+ +|+
T Consensus 134 ~~~p~~rvlhltDiH~D~~Y~~gs~a~c~~p~ccr~s~~~p~~~~~~Ag~wG~y~~CD~P~~lies~L~~ike~~~~iD~ 213 (577)
T KOG3770|consen 134 KNNPTFRVLHLTDIHLDPDYSEGSDADCDCPMCCRNSDGTPSGTKVAAGPWGDYGKCDSPKRLIESALDHIKENHKDIDY 213 (577)
T ss_pred CCCCceeEEEeeccccCcccccCCcccccCccccccCCCCCCCccccCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCCCE
Confidence 4446699999999999754310 11110 11 134455555555544 44 899
Q ss_pred EEEcCccCCCCccCC-h----hhHHHHHHHHHhhhcCCCCceEEEecCCCCCCCCC-----CCCch---------hHHHH
Q psy2930 57 IFVLGDLLDEGQYVG-G----EDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHY-----RLHPY---------LNDRF 117 (293)
Q Consensus 57 vi~~GDl~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~~~~-----~~~~~---------~~~~~ 117 (293)
|+.+||++..-.+.. . .......+.+.+.+ +++|||...||||..... ..... ....|
T Consensus 214 I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~F---pdvpvypalGNhe~~P~N~F~~~~~~~~~~~~wly~~~~~~W 290 (577)
T KOG3770|consen 214 IIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYF---PDVPVYPALGNHEIHPVNLFAPGSVPKRHSQLWLYKHLAGAW 290 (577)
T ss_pred EEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhC---CCCceeeecccCCCCcHhhcCCCCCcchhhhhHHHHHHHhhh
Confidence 999999998654322 2 22444455555555 689999999999985321 01111 01122
Q ss_pred HHHhCCC---------CcceEEeCCEEEEEEeceeccCCCCCC---CchhHHHHHHHHHHhhhcccCCCCCccccCCCCC
Q psy2930 118 SRAFNSS---------MVKLLSIKGSYFVLINSMALEGDGCFL---CKPAQDRISLISAKLKCCRKDRECPKSMKLGSYS 185 (293)
Q Consensus 118 ~~~~~~~---------~~~~~~~~~~~~i~lds~~~~~~~~~~---~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 185 (293)
..+.... .|-....+|.++|.||+.......... ......+|+|+..+|..+++ ++.
T Consensus 291 ~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae~-----------~Ge 359 (577)
T KOG3770|consen 291 STWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAES-----------AGE 359 (577)
T ss_pred hccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHHh-----------cCC
Confidence 2222221 133445699999999998876554321 12234569999999999876 788
Q ss_pred CCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcC--ccEEEecCCCCCceeeccCC-----
Q psy2930 186 QPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLN--PRLVIDGHTHNGCHKYHAYG----- 258 (293)
Q Consensus 186 ~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~--~~lvl~GH~H~~~~~~~~~~----- 258 (293)
.+-++.|+|+.. ..|.. +| . .-..+++.++. +...|.||+|.....+..+.
T Consensus 360 kVhil~HIPpG~---~~c~~---------------~w---s-~~f~~iv~r~~~tI~gqf~GH~h~d~f~v~yde~~~~p 417 (577)
T KOG3770|consen 360 KVHILGHIPPGD---GVCLE---------------GW---S-INFYRIVNRFRSTIAGQFYGHTHIDEFRVFYDEETGHP 417 (577)
T ss_pred EEEEEEeeCCCC---cchhh---------------hh---h-HHHHHHHHHHHHhhhhhccccCcceeEEEEeccccCCc
Confidence 999999999943 22221 11 1 12455666663 66789999999986542221
Q ss_pred CeeEEeccceeccCCCCCceEEEEEec
Q psy2930 259 KVHEYTVPSFSWRNKNNPSFLMGYVVE 285 (293)
Q Consensus 259 ~~~~~~~~s~~~~~~~~p~f~~~~~~~ 285 (293)
..--++.||+......+|+|.+..+++
T Consensus 418 ~~v~~i~~svtty~~~~p~yr~y~~~~ 444 (577)
T KOG3770|consen 418 IAVAYIGPSVTTYYNKNPGYRIYAVDS 444 (577)
T ss_pred eeeeeccccceehhccCCCceecccCc
Confidence 112255677777777789999988874
No 43
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.61 E-value=8.2e-14 Score=117.53 Aligned_cols=103 Identities=18% Similarity=0.271 Sum_probs=58.9
Q ss_pred EEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHh--cCCCEEEEcCccCCCCcc--CChhhHHHHHHHHHhhhcCCCC
Q psy2930 16 IFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL--HQPEHIFVLGDLLDEGQY--VGGEDFDNYVRRFYSLFSTPDG 91 (293)
Q Consensus 16 ~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pd~vi~~GDl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 91 (293)
+++||+|++..... ..+.+.+.+.+ .+||.|+++||+++.... ..........+.+..+. ..+
T Consensus 2 ~~iSDlHl~~~~~~-----------~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~--~~~ 68 (231)
T TIGR01854 2 LFISDLHLSPERPD-----------ITALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVS--DQG 68 (231)
T ss_pred eEEEecCCCCCChh-----------HHHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHH--HCC
Confidence 78999999754321 11122233322 289999999999985321 11122223333344433 346
Q ss_pred ceEEEecCCCCCCCCCCCCchhHHHHHHHhCC---CCcceEEeCCEEEEEE
Q psy2930 92 TELHVVPGNHDMGFHYRLHPYLNDRFSRAFNS---SMVKLLSIKGSYFVLI 139 (293)
Q Consensus 92 ~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~l 139 (293)
+|+++++||||.... ..+.+..+- .....+.+++.+++++
T Consensus 69 ~~v~~v~GNHD~~~~--------~~~~~~~gi~~l~~~~~~~~~g~~ill~ 111 (231)
T TIGR01854 69 VPCYFMHGNRDFLIG--------KRFAREAGMTLLPDPSVIDLYGQKVLLM 111 (231)
T ss_pred CeEEEEcCCCchhhh--------HHHHHHCCCEEECCCEEEEECCEEEEEE
Confidence 899999999997421 223222221 1235567788888887
No 44
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.61 E-value=2.3e-14 Score=113.45 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=44.9
Q ss_pred HHHhhcCccEEEecCCCCCceeeccCCCeeEEeccceeccC-CCCCceEEEEEecCCceeee
Q psy2930 232 MLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRN-KNNPSFLMGYVVENSSGVNL 292 (293)
Q Consensus 232 ~ll~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~-~~~p~f~~~~~~~~~~~~~~ 292 (293)
++++..+++++++||+|...... .+++..++.+|++... .+.++|.++++++ +.++++
T Consensus 96 ~~~~~~~~d~vi~GHtH~~~~~~--~~~~~~inpGs~~~~~~~~~~~~~i~~~~~-~~~~~~ 154 (155)
T cd00841 96 YLAKEGGADVVLYGHTHIPVIEK--IGGVLLLNPGSLSLPRGGGPPTYAILEIDD-KGEVEI 154 (155)
T ss_pred hhhhhcCCCEEEECcccCCccEE--ECCEEEEeCCCccCcCCCCCCeEEEEEecC-CCcEEE
Confidence 34455579999999999998653 3478889999988654 3567999999998 777764
No 45
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.60 E-value=1.9e-14 Score=114.37 Aligned_cols=56 Identities=21% Similarity=0.180 Sum_probs=41.4
Q ss_pred HHHhhcCccEEEecCCCCCceeeccCCCeeEEeccceeccCC-CCCceEEEEEecCCce
Q psy2930 232 MLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRNK-NNPSFLMGYVVENSSG 289 (293)
Q Consensus 232 ~ll~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~~-~~p~f~~~~~~~~~~~ 289 (293)
.+....+++++++||+|...... .+++..++.+|++.... ..|+|.++++.++..+
T Consensus 100 ~~~~~~~~d~vi~GHtH~~~~~~--~~~~~~iNpGs~~~~~~~~~~~~~il~~~~~~~~ 156 (158)
T TIGR00040 100 YLAKELGVDVLIFGHTHIPVAEE--LRGILLINPGSLTGPRNGNTPSYAILDVDKDKVT 156 (158)
T ss_pred HHHhccCCCEEEECCCCCCccEE--ECCEEEEECCccccccCCCCCeEEEEEecCCeEE
Confidence 33344578999999999997643 24788999998775443 3689999999877554
No 46
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.60 E-value=1.5e-13 Score=114.54 Aligned_cols=65 Identities=26% Similarity=0.305 Sum_probs=44.2
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
+||+++||+|.... . ...+.+++.+||+|+++||+++.. ....+.+.+ ...
T Consensus 1 ~rIa~isDiHg~~~------~----------~~~~~l~~~~pD~Vl~~GDi~~~~--------~~~~~~l~~-----l~~ 51 (238)
T cd07397 1 LRIAIVGDVHGQWD------L----------EDIKALHLLQPDLVLFVGDFGNES--------VQLVRAISS-----LPL 51 (238)
T ss_pred CEEEEEecCCCCch------H----------HHHHHHhccCCCEEEECCCCCcCh--------HHHHHHHHh-----CCC
Confidence 58999999996211 0 012345668999999999998632 122333333 246
Q ss_pred eEEEecCCCCCCCC
Q psy2930 93 ELHVVPGNHDMGFH 106 (293)
Q Consensus 93 ~~~~v~GNHD~~~~ 106 (293)
|+++++||||.++.
T Consensus 52 p~~~V~GNHD~~~~ 65 (238)
T cd07397 52 PKAVILGNHDAWYD 65 (238)
T ss_pred CeEEEcCCCccccc
Confidence 89999999999764
No 47
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.59 E-value=1.7e-13 Score=110.71 Aligned_cols=59 Identities=19% Similarity=0.045 Sum_probs=43.6
Q ss_pred HHHhhcCccEEEecCCCCCceeeccCCCeeEEeccceeccC----C-CCCceEEEEEecCCceeee
Q psy2930 232 MLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRN----K-NNPSFLMGYVVENSSGVNL 292 (293)
Q Consensus 232 ~ll~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~----~-~~p~f~~~~~~~~~~~~~~ 292 (293)
++.++.+++++++||+|.+.... .+++..++.+|++... + +.|+|.+++++.++..+.+
T Consensus 100 ~~~~~~~~dvii~GHTH~p~~~~--~~g~~viNPGSv~~~~~~~~~~~~~syail~~~~~~~~~~~ 163 (178)
T cd07394 100 ALQRQLDVDILISGHTHKFEAFE--HEGKFFINPGSATGAFSPLDPNVIPSFVLMDIQGSKVVTYV 163 (178)
T ss_pred HHHHhcCCCEEEECCCCcceEEE--ECCEEEEECCCCCCCCCCCCCCCCCeEEEEEecCCeEEEEE
Confidence 34444578999999999987643 3479999999987432 1 3579999999888765543
No 48
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=99.57 E-value=3.3e-13 Score=122.36 Aligned_cols=87 Identities=25% Similarity=0.336 Sum_probs=56.4
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
|||+|+||+|+|....+.. +...-..+.+.+.+.+.+.+||+||++|||++.+.... .....+.++...+. ..++
T Consensus 1 mkilh~SDlHlG~~~~~~~--~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~--~a~~~~~~~l~~L~-~~~~ 75 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKS--RAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPS--YARELYNRFVVNLQ-QTGC 75 (407)
T ss_pred CEEEEEcccCCCCcccCcc--cHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcH--HHHHHHHHHHHHHH-hcCC
Confidence 7999999999986432211 11111234456677777899999999999999765321 11222333333232 3468
Q ss_pred eEEEecCCCCCC
Q psy2930 93 ELHVVPGNHDMG 104 (293)
Q Consensus 93 ~~~~v~GNHD~~ 104 (293)
|+++|+||||..
T Consensus 76 ~v~~I~GNHD~~ 87 (407)
T PRK10966 76 QLVVLAGNHDSV 87 (407)
T ss_pred cEEEEcCCCCCh
Confidence 999999999974
No 49
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.56 E-value=1.2e-13 Score=106.66 Aligned_cols=64 Identities=22% Similarity=0.245 Sum_probs=40.0
Q ss_pred CCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCCCceee---ccCCCee
Q psy2930 185 SQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKY---HAYGKVH 261 (293)
Q Consensus 185 ~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~---~~~~~~~ 261 (293)
.+.|+++|.|++...... .. ........+.+++++.+++++++||+|.+.... ...+++.
T Consensus 68 ~~~ilv~H~~p~~~~~~~----~~-------------~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~~t~ 130 (135)
T cd07379 68 DTDILVTHGPPYGHLDLV----SS-------------GQRVGCEELLNRVQRVRPKLHVFGHIHEGYGAERVLDTDGETL 130 (135)
T ss_pred CCEEEEECCCCCcCcccc----cc-------------CcccCCHHHHHHHHHHCCcEEEEcCcCCcCceeEecccCCCEE
Confidence 367899999985432110 00 011223456778888899999999999997432 1344666
Q ss_pred EEec
Q psy2930 262 EYTV 265 (293)
Q Consensus 262 ~~~~ 265 (293)
++++
T Consensus 131 ~in~ 134 (135)
T cd07379 131 FVNA 134 (135)
T ss_pred EEeC
Confidence 6653
No 50
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=99.52 E-value=3.6e-13 Score=122.42 Aligned_cols=88 Identities=18% Similarity=0.289 Sum_probs=61.3
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
|||+|+||+|+|...... ..+...-+.....+...+.+.++|+||++||+++.+.+. .+....+.+.|+++. ..++
T Consensus 1 mkilHtSD~HLG~~~~~~-~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps-~~a~~~~~~~l~~l~--~~~I 76 (390)
T COG0420 1 MKILHTSDWHLGSKQLNL-PSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPS-PRALKLFLEALRRLK--DAGI 76 (390)
T ss_pred CeeEEecccccchhhccC-ccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCC-HHHHHHHHHHHHHhc--cCCC
Confidence 799999999998422111 111121223444455556668999999999999986643 455666666676665 5789
Q ss_pred eEEEecCCCCCC
Q psy2930 93 ELHVVPGNHDMG 104 (293)
Q Consensus 93 ~~~~v~GNHD~~ 104 (293)
|+++++||||..
T Consensus 77 pv~~I~GNHD~~ 88 (390)
T COG0420 77 PVVVIAGNHDSP 88 (390)
T ss_pred cEEEecCCCCch
Confidence 999999999984
No 51
>PRK04036 DNA polymerase II small subunit; Validated
Probab=99.52 E-value=1.1e-12 Score=122.24 Aligned_cols=125 Identities=18% Similarity=0.328 Sum_probs=72.6
Q ss_pred CCCCC------CCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHH---------hcCCCEEEEcCccCCCC
Q psy2930 3 WPASP------ESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVA---------LHQPEHIFVLGDLLDEG 67 (293)
Q Consensus 3 w~~~~------~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~pd~vi~~GDl~~~~ 67 (293)
||.++ ...+.++++++||+|+|...... ...+.|.++++ ..+++.||++||+++..
T Consensus 228 ~p~~p~~~~~~~~~~~~~i~~ISDlHlgs~~~~~---------~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~ 298 (504)
T PRK04036 228 RPDVPRTKEPPTKDEKVYAVFISDVHVGSKEFLE---------DAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGI 298 (504)
T ss_pred CCCCCccCCCCcCCCccEEEEEcccCCCCcchhH---------HHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccc
Confidence 56665 33556899999999997754211 11234555565 56899999999999852
Q ss_pred ccC--Ch---------hhHHHHHHHHHhhhcCCCCceEEEecCCCCCCCCCCCCchhHHHHHHHhCCC------CcceEE
Q psy2930 68 QYV--GG---------EDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSS------MVKLLS 130 (293)
Q Consensus 68 ~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 130 (293)
... .. +++....+.+.++ ..++|++++|||||.......++.....+.+.+... ++..+.
T Consensus 299 ~~~p~~~~~~~~~~~~~~~~~l~~~L~~L---~~~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~~~v~~lsNP~~i~ 375 (504)
T PRK04036 299 GIYPGQEEELEIVDIYEQYEAAAEYLKQI---PEDIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPEHNVTFVSNPALVN 375 (504)
T ss_pred cCCccchhhccchhhHHHHHHHHHHHHhh---hcCCeEEEecCCCcchhhccCCCCccHHHHHhcCcCCeEEecCCeEEE
Confidence 210 00 1122222222222 357899999999998532111121123344444432 245567
Q ss_pred eCCEEEEEE
Q psy2930 131 IKGSYFVLI 139 (293)
Q Consensus 131 ~~~~~~i~l 139 (293)
++|.++++.
T Consensus 376 l~G~~iLl~ 384 (504)
T PRK04036 376 LHGVDVLIY 384 (504)
T ss_pred ECCEEEEEE
Confidence 788888776
No 52
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.51 E-value=1.2e-13 Score=119.04 Aligned_cols=84 Identities=26% Similarity=0.344 Sum_probs=54.7
Q ss_pred CCCCCCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHH
Q psy2930 4 PASPESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFY 83 (293)
Q Consensus 4 ~~~~~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~ 83 (293)
|.++...+.++|+++||+|+.... . -..++...+....||+|+++||+++...... .......+.
T Consensus 36 ~~~~~~~~~~~iv~lSDlH~~~~~-----~-------~~~~~~~~i~~~~~DlivltGD~~~~~~~~~---~~~~~~~L~ 100 (284)
T COG1408 36 PKLPASLQGLKIVQLSDLHSLPFR-----E-------EKLALLIAIANELPDLIVLTGDYVDGDRPPG---VAALALFLA 100 (284)
T ss_pred CCCCcccCCeEEEEeehhhhchhh-----H-------HHHHHHHHHHhcCCCEEEEEeeeecCCCCCC---HHHHHHHHH
Confidence 344456678999999999994432 1 1122344455677799999999999622222 333333344
Q ss_pred hhhcCCCCceEEEecCCCCCCC
Q psy2930 84 SLFSTPDGTELHVVPGNHDMGF 105 (293)
Q Consensus 84 ~~~~~~~~~~~~~v~GNHD~~~ 105 (293)
++. ...+++++.||||++.
T Consensus 101 ~L~---~~~gv~av~GNHd~~~ 119 (284)
T COG1408 101 KLK---APLGVFAVLGNHDYGV 119 (284)
T ss_pred hhh---ccCCEEEEeccccccc
Confidence 432 4568999999999864
No 53
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.50 E-value=6.7e-13 Score=113.31 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=55.9
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCC-
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDG- 91 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 91 (293)
|||+|+||+|+|....+.. +........+.+.+.+.+.+||+|+++||+++...... .....+.+.+.++. ..+
T Consensus 1 mkilh~SD~Hlg~~~~~~~--~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~-~~~~~~~~~l~~l~--~~~~ 75 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVS--RLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPA-EAQELFNAFFRNLS--DANP 75 (253)
T ss_pred CEEEEEhhhcCCCccCCCC--hHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCH-HHHHHHHHHHHHHH--hcCC
Confidence 7999999999987543211 11111234455666667789999999999999765322 22222223333332 234
Q ss_pred ceEEEecCCCCCC
Q psy2930 92 TELHVVPGNHDMG 104 (293)
Q Consensus 92 ~~~~~v~GNHD~~ 104 (293)
+|+++++||||..
T Consensus 76 i~v~~i~GNHD~~ 88 (253)
T TIGR00619 76 IPIVVISGNHDSA 88 (253)
T ss_pred ceEEEEccCCCCh
Confidence 8999999999974
No 54
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.50 E-value=2.7e-14 Score=116.89 Aligned_cols=205 Identities=18% Similarity=0.203 Sum_probs=112.7
Q ss_pred EEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhc--CCCEEEEcCccCCCCc--cCChhhHHHHHHHHHhhhcCCCC
Q psy2930 16 IFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALH--QPEHIFVLGDLLDEGQ--YVGGEDFDNYVRRFYSLFSTPDG 91 (293)
Q Consensus 16 ~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~pd~vi~~GDl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 91 (293)
++|||+|+++.... ..+.|.+.++.. +.|.++++|||++... ...+....+...++..+. ..|
T Consensus 1 lFISDlHL~~~~p~-----------~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a--~~G 67 (237)
T COG2908 1 LFISDLHLGPKRPA-----------LTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLA--RKG 67 (237)
T ss_pred CeeeccccCCCCcH-----------HHHHHHHHHHhccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHH--hcC
Confidence 47999999755431 223455555555 4599999999999643 212334555566677766 689
Q ss_pred ceEEEecCCCCCCCCCCCCchhHHHHHHHhCC----CCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhh
Q psy2930 92 TELHVVPGNHDMGFHYRLHPYLNDRFSRAFNS----SMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLK 167 (293)
Q Consensus 92 ~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~ 167 (293)
+++|.++||||.- ..++|...++. +.+-.....|-+++++ +|+..... .....|+.....
T Consensus 68 ~~v~~i~GN~Dfl--------l~~~f~~~~g~~~l~~~~~~~~l~g~~~Ll~-----HGD~f~t~---~~~y~~~r~~~~ 131 (237)
T COG2908 68 TRVYYIHGNHDFL--------LGKRFAQEAGGMTLLPDPIVLDLYGKRILLA-----HGDTFCTD---DRAYQWFRYKVH 131 (237)
T ss_pred CeEEEecCchHHH--------HHHHHHhhcCceEEcCcceeeeecCcEEEEE-----eCCcccch---HHHHHHHHHHcc
Confidence 9999999999963 23556666662 2356777888888887 45433221 122223322111
Q ss_pred hcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCC---chhhhhcccccccccccCHHHHHHHHhhcCccEEEe
Q psy2930 168 CCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDS---APDIEKRKKFRQRWECISKESTDMLLDYLNPRLVID 244 (293)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~ 244 (293)
. ..-..++++.|+... ..-...+.. .......+.+ .+.-.......+..++.+++.+++
T Consensus 132 ~---------------~~~~~lflnl~l~~R-~ri~~k~r~~s~~~k~~~~~~~--~i~d~~~~~v~~~~~~~~vd~vI~ 193 (237)
T COG2908 132 W---------------AWLQLLFLNLPLRVR-RRIAYKIRSLSSWAKKKVKKAV--NIMDVNPAAVADEARRHGVDGVIH 193 (237)
T ss_pred c---------------HHHHHHHHHhHHHHH-HHHHHHHHHhhHHhHHhhhhHH--HHHHhhHHHHHHHHHHcCCCEEEe
Confidence 0 001112233332100 000000000 0000000000 012223446677888889999999
Q ss_pred cCCCCCceeeccCCCeeEEecccee
Q psy2930 245 GHTHNGCHKYHAYGKVHEYTVPSFS 269 (293)
Q Consensus 245 GH~H~~~~~~~~~~~~~~~~~~s~~ 269 (293)
||+|+.... ...+...+++|+..
T Consensus 194 GH~Hr~ai~--~i~~~~yi~lGdW~ 216 (237)
T COG2908 194 GHTHRPAIH--NIPGITYINLGDWV 216 (237)
T ss_pred cCcccHhhc--cCCCceEEecCcch
Confidence 999999863 33367888888743
No 55
>PRK09453 phosphodiesterase; Provisional
Probab=99.49 E-value=1.4e-12 Score=105.98 Aligned_cols=44 Identities=18% Similarity=0.147 Sum_probs=34.2
Q ss_pred CccEEEecCCCCCceeeccCCCeeEEeccceeccCC-CCCceEEEEE
Q psy2930 238 NPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRNK-NNPSFLMGYV 283 (293)
Q Consensus 238 ~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~~-~~p~f~~~~~ 283 (293)
+.+++++||+|.+.... .++...++.+|++...+ +.++|.++++
T Consensus 118 ~~d~vi~GHtH~p~~~~--~~~~~~iNpGs~~~p~~~~~~s~~il~~ 162 (182)
T PRK09453 118 DGDVLVYGHTHIPVAEK--QGGIILFNPGSVSLPKGGYPASYGILDD 162 (182)
T ss_pred CCCEEEECCCCCCcceE--ECCEEEEECCCccccCCCCCCeEEEEEC
Confidence 57899999999987643 24789999999875443 4578988887
No 56
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=99.48 E-value=2.5e-12 Score=102.37 Aligned_cols=160 Identities=21% Similarity=0.174 Sum_probs=101.5
Q ss_pred ceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCC
Q psy2930 12 NIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDG 91 (293)
Q Consensus 12 ~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (293)
.|+|+++||+|..... .....+.....++|+||++||.+.... ...+... ..
T Consensus 1 ~m~ilviSDtH~~~~~--------------~~~~~~~~~~~~~d~vih~GD~~~~~~----------~~~l~~~----~~ 52 (172)
T COG0622 1 MMKILVISDTHGPLRA--------------IEKALKIFNLEKVDAVIHAGDSTSPFT----------LDALEGG----LA 52 (172)
T ss_pred CcEEEEEeccCCChhh--------------hhHHHHHhhhcCCCEEEECCCcCCccc----------hHHhhcc----cc
Confidence 4899999999994321 111233444579999999999998543 2223331 14
Q ss_pred ceEEEecCCCCCCCCCCCCchhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhhhccc
Q psy2930 92 TELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRK 171 (293)
Q Consensus 92 ~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~ 171 (293)
.++++|.||.|..... ..+++ ...+.+++.+|.+. +|..+.. ....
T Consensus 53 ~~i~~V~GN~D~~~~~-----------~~~p~--~~~~~~~g~ki~l~-----HGh~~~~-~~~~--------------- 98 (172)
T COG0622 53 AKLIAVRGNCDGEVDQ-----------EELPE--ELVLEVGGVKIFLT-----HGHLYFV-KTDL--------------- 98 (172)
T ss_pred cceEEEEccCCCcccc-----------ccCCh--hHeEEECCEEEEEE-----CCCcccc-ccCH---------------
Confidence 5899999999985210 11111 25566666666665 3321110 0001
Q ss_pred CCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCCCc
Q psy2930 172 DRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGC 251 (293)
Q Consensus 172 ~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~ 251 (293)
..+..+-+..+.++++.||+|.+.
T Consensus 99 --------------------------------------------------------~~l~~la~~~~~Dvli~GHTH~p~ 122 (172)
T COG0622 99 --------------------------------------------------------SLLEYLAKELGADVLIFGHTHKPV 122 (172)
T ss_pred --------------------------------------------------------HHHHHHHHhcCCCEEEECCCCccc
Confidence 122333333378999999999998
Q ss_pred eeeccCCCeeEEeccceeccCCCCC-ceEEEEEecCCceee
Q psy2930 252 HKYHAYGKVHEYTVPSFSWRNKNNP-SFLMGYVVENSSGVN 291 (293)
Q Consensus 252 ~~~~~~~~~~~~~~~s~~~~~~~~p-~f~~~~~~~~~~~~~ 291 (293)
... .+++..++-+|+|...++.| +|.++++.+..+.+.
T Consensus 123 ~~~--~~~i~~vNPGS~s~pr~~~~~sy~il~~~~~~~~~~ 161 (172)
T COG0622 123 AEK--VGGILLVNPGSVSGPRGGNPASYAILDVDNLEVEVL 161 (172)
T ss_pred EEE--ECCEEEEcCCCcCCCCCCCCcEEEEEEcCCCEEEEE
Confidence 754 34789999999997665555 999999988776654
No 57
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=99.46 E-value=4e-13 Score=112.25 Aligned_cols=106 Identities=25% Similarity=0.310 Sum_probs=60.6
Q ss_pred EEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccC---ChhhHHHHHHHHHhhhcCCCCc
Q psy2930 16 IFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYV---GGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 16 ~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
+++||+|++........ ....+.......+||.|+++||+++..... ...........+.+.. ..++
T Consensus 1 ~~iSDlHlg~~~~~~~~--------~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~--~~~~ 70 (217)
T cd07398 1 LFISDLHLGDGGPAADF--------LLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLA--DRGT 70 (217)
T ss_pred CEeeeecCCCCCCCHHH--------HHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHH--HCCC
Confidence 47999999876543210 111111111135999999999999853211 1122222223444544 4678
Q ss_pred eEEEecCCCCCCCCCCCCchhHHHHHHHhCCC---Ccc-eEEeCCEEEEEE
Q psy2930 93 ELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSS---MVK-LLSIKGSYFVLI 139 (293)
Q Consensus 93 ~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~i~l 139 (293)
+++.++||||.... ..+....+.. ... .+..++.+++++
T Consensus 71 ~v~~v~GNHD~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 113 (217)
T cd07398 71 RVYYVPGNHDFLLG--------DFFAEELGLILLPDPLVHLELDGKRILLE 113 (217)
T ss_pred eEEEECCCchHHHH--------hHHHHHcCCEEeccceEEEeeCCeEEEEE
Confidence 99999999998531 1122221211 123 678899999997
No 58
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.42 E-value=5.1e-12 Score=96.72 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=35.3
Q ss_pred CHHHHHHHHhhcCccEEEecCCCCCceee---ccCCCeeEEeccceeccCCCCCceEEEEE
Q psy2930 226 SKESTDMLLDYLNPRLVIDGHTHNGCHKY---HAYGKVHEYTVPSFSWRNKNNPSFLMGYV 283 (293)
Q Consensus 226 ~~~~~~~ll~~~~~~lvl~GH~H~~~~~~---~~~~~~~~~~~~s~~~~~~~~p~f~~~~~ 283 (293)
+.+.+.+++.+.+++++|+||+|...... ...+++.++++ .||.++++
T Consensus 79 g~~~l~~~l~~~~~~~vl~GH~H~~~~~~~~~~~~~~t~~~n~----------~~~~~~~~ 129 (129)
T cd07403 79 GFEAFLDFIDRFRPKLFIHGHTHLNYGYQLRIRRVGDTTVINA----------YGYRVLEL 129 (129)
T ss_pred CHHHHHHHHHHHCCcEEEEcCcCCCcCccccccccCCEEEEeC----------CcEEEEeC
Confidence 34567788888899999999999998754 23456777765 47777764
No 59
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.41 E-value=3e-12 Score=97.34 Aligned_cols=69 Identities=29% Similarity=0.320 Sum_probs=45.2
Q ss_pred EEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEE
Q psy2930 16 IFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELH 95 (293)
Q Consensus 16 ~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (293)
+++||+|++........ ......+.++|+||++||+++.+.......+.. +.... ..+.|++
T Consensus 1 ~~~gD~h~~~~~~~~~~------------~~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~----~~~~~--~~~~~~~ 62 (131)
T cd00838 1 AVISDIHGNLEALEAVL------------EAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAA----LALLL--LLGIPVY 62 (131)
T ss_pred CeeecccCCccchHHHH------------HHHHhcccCCCEEEECCcccCCCCCchHHHHHH----HHHhh--cCCCCEE
Confidence 47899999654321100 023445679999999999999876443222221 22333 4688999
Q ss_pred EecCCCC
Q psy2930 96 VVPGNHD 102 (293)
Q Consensus 96 ~v~GNHD 102 (293)
+++||||
T Consensus 63 ~~~GNHD 69 (131)
T cd00838 63 VVPGNHD 69 (131)
T ss_pred EeCCCce
Confidence 9999999
No 60
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=99.36 E-value=3.7e-11 Score=102.20 Aligned_cols=115 Identities=21% Similarity=0.296 Sum_probs=61.7
Q ss_pred EEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhc-----CCCEEEEcCccCCCCccC--Ch-----hhHHHHHHHHH
Q psy2930 16 IFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALH-----QPEHIFVLGDLLDEGQYV--GG-----EDFDNYVRRFY 83 (293)
Q Consensus 16 ~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~pd~vi~~GDl~~~~~~~--~~-----~~~~~~~~~~~ 83 (293)
+++||+|++...... ...+.+.++++.. ++|.||++||+++..... .. ....+.++.+.
T Consensus 2 ~~iSDlHl~~~~~~~---------~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (243)
T cd07386 2 VFISDVHVGSKTFLE---------DAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAA 72 (243)
T ss_pred EEecccCCCchhhhH---------HHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHH
Confidence 789999997653211 1223455555554 569999999999963210 00 01111122333
Q ss_pred hhhc-CCCCceEEEecCCCCCCCCCCCCchhHHHHHHHhCC------CCcceEEeCCEEEEEE
Q psy2930 84 SLFS-TPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNS------SMVKLLSIKGSYFVLI 139 (293)
Q Consensus 84 ~~~~-~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~l 139 (293)
+++. ...+++++++|||||.......++.....+.+.+.. .+.+.+.++|.+|++.
T Consensus 73 ~~l~~L~~~~~v~~ipGNHD~~~~~~pq~~l~~~l~~~~~~~~v~~l~Np~~~~~~g~~i~~~ 135 (243)
T cd07386 73 EYLSDVPSHIKIIIIPGNHDAVRQAEPQPALPEEIRKLFLPGNVEFVSNPALVKIHGVDVLIY 135 (243)
T ss_pred HHHHhcccCCeEEEeCCCCCcccccCCCCCccHHHHhhcCCCceEEeCCCCEEEECCEEEEEE
Confidence 3321 134789999999999853211111112233332211 1235567788887765
No 61
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=99.25 E-value=7.6e-10 Score=94.65 Aligned_cols=83 Identities=13% Similarity=0.065 Sum_probs=44.9
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCC-EEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCC
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPE-HIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDG 91 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd-~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (293)
++|+++||+|. ......... .......+.+.+++..|| +++.+||+++..............+.+.. .+
T Consensus 1 l~i~~~sD~hg-~~~~~~~~~----g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~-----~g 70 (252)
T cd00845 1 LTILHTNDLHG-HFEPAGGVG----GAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNA-----LG 70 (252)
T ss_pred CEEEEeccccc-CccccCCcC----CHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHh-----cC
Confidence 58999999994 321100000 011122344455556788 77999999986553221122222333332 23
Q ss_pred ceEEEecCCCCCCCC
Q psy2930 92 TELHVVPGNHDMGFH 106 (293)
Q Consensus 92 ~~~~~v~GNHD~~~~ 106 (293)
..++++||||+...
T Consensus 71 -~d~~~~GNHe~d~g 84 (252)
T cd00845 71 -YDAVTIGNHEFDYG 84 (252)
T ss_pred -CCEEeecccccccc
Confidence 23677899998653
No 62
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=99.19 E-value=1.2e-09 Score=98.01 Aligned_cols=124 Identities=16% Similarity=0.241 Sum_probs=71.9
Q ss_pred CCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhc-----CCCEEEEcCccCCCCc--cCChhh-----H
Q psy2930 8 ESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALH-----QPEHIFVLGDLLDEGQ--YVGGED-----F 75 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~pd~vi~~GDl~~~~~--~~~~~~-----~ 75 (293)
..+..++++++||+|.|+..- .. ..+..+.++++-. +..+++++||++++.. .-+..+ .
T Consensus 221 ~~~e~v~v~~isDih~GSk~F---~~------~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di 291 (481)
T COG1311 221 TGDERVYVALISDIHRGSKEF---LE------DEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADI 291 (481)
T ss_pred CCCcceEEEEEeeeecccHHH---HH------HHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccc
Confidence 555668999999999977632 10 1223455555432 5689999999999522 111111 0
Q ss_pred HHHHHHHHhhhc-CCCCceEEEecCCCCCCCCCCCCchhHHHHHHHhCC------CCcceEEeCCEEEEEEe
Q psy2930 76 DNYVRRFYSLFS-TPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNS------SMVKLLSIKGSYFVLIN 140 (293)
Q Consensus 76 ~~~~~~~~~~~~-~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~ld 140 (293)
.+.++++++.+. ....+.++++|||||.......++.....-+..|.. .+++.+.++|+.++...
T Consensus 292 ~~qy~~~A~~L~~vp~~I~v~i~PGnhDa~r~a~PQp~~~~~~kslf~~~n~~~v~NP~~~~l~G~~vL~~h 363 (481)
T COG1311 292 YEQYEELAEFLDQVPEHIKVFIMPGNHDAVRQALPQPHFPELIKSLFSLNNLLFVSNPALVSLHGVDVLIYH 363 (481)
T ss_pred hHHHHHHHHHHhhCCCCceEEEecCCCCccccccCCCCcchhhcccccccceEecCCCcEEEECCEEEEEec
Confidence 111333444332 156888999999999865443333222222222221 14678888998888763
No 63
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=99.17 E-value=5.9e-09 Score=89.36 Aligned_cols=83 Identities=18% Similarity=0.288 Sum_probs=44.6
Q ss_pred eEEEEEecCCcCCCCC-CchhHHHHhHHHHHHHHHHHHHhcCCC-EEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCC
Q psy2930 13 IKAIFIADTHLLGPFR-GHWFDKLRREWQMYKTFQTAVALHQPE-HIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPD 90 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pd-~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (293)
++|++++|+|--.+.. +.+.. + ....++.+.+++.+|+ +++.+||+++.+......+-...++.+..+
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG-~----~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l----- 70 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGG-A----ARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNAL----- 70 (257)
T ss_pred CeEEEEccceeecccCCCCcCC-H----HHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhc-----
Confidence 5899999999322111 11111 1 1123344445556777 999999999865322111112223333322
Q ss_pred CceEEEecCCCCCCCC
Q psy2930 91 GTELHVVPGNHDMGFH 106 (293)
Q Consensus 91 ~~~~~~v~GNHD~~~~ 106 (293)
+. -++++||||+.++
T Consensus 71 ~~-d~~~~GNHefd~g 85 (257)
T cd07406 71 GV-DLACFGNHEFDFG 85 (257)
T ss_pred CC-cEEeecccccccC
Confidence 22 3778999999653
No 64
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=99.13 E-value=3.1e-09 Score=92.22 Aligned_cols=207 Identities=15% Similarity=0.127 Sum_probs=100.8
Q ss_pred eEEEEEecCCcCCCCCCc---hhHHHHhHHHHHHHHHHHHHhcCCCEEEE-cCccCCCCccCChh------hHHHHHHHH
Q psy2930 13 IKAIFIADTHLLGPFRGH---WFDKLRREWQMYKTFQTAVALHQPEHIFV-LGDLLDEGQYVGGE------DFDNYVRRF 82 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~pd~vi~-~GDl~~~~~~~~~~------~~~~~~~~~ 82 (293)
++|++++|+|..-..... ...... .......+.+.+++.+|+.+++ +||+++......-. .-...++.+
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~g-g~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~l 79 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASG-GLARVATLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAM 79 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCcc-CHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHH
Confidence 589999999954221100 000000 1111233455556668888887 99999854311100 001223333
Q ss_pred HhhhcCCCCceEEEecCCCCCCCCCCCCchhHHHHHHHhCC-----------------CCcceEEeC-CEEEEEEeceec
Q psy2930 83 YSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNS-----------------SMVKLLSIK-GSYFVLINSMAL 144 (293)
Q Consensus 83 ~~~~~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~-~~~~i~lds~~~ 144 (293)
..+ +.. ++++||||+.++.. ......+..+. ..+.++..+ |+++-++.-..-
T Consensus 80 n~~-----g~d-~~~lGNHe~d~g~~----~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~~~~ 149 (277)
T cd07410 80 NAL-----GYD-AGTLGNHEFNYGLD----YLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGLTTP 149 (277)
T ss_pred Hhc-----CCC-EEeecccCcccCHH----HHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEecCCc
Confidence 322 333 77789999865321 11111111111 113466788 877777632211
Q ss_pred cCC---------CCCCCchhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhc
Q psy2930 145 EGD---------GCFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKR 215 (293)
Q Consensus 145 ~~~---------~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~ 215 (293)
... +..+... .+.+++..++|+.. ..+.+|+++|......... .
T Consensus 150 ~~~~~~~~~~~~~~~~~d~-~~~~~~~v~~lr~~-------------~~D~IIvl~H~g~~~~~~~-~------------ 202 (277)
T cd07410 150 QIPNWEKPNLIGGLKFTDP-VETAKKYVPKLRAE-------------GADVVVVLAHGGFERDLEE-S------------ 202 (277)
T ss_pred ccccccCcccCCCcEEcCH-HHHHHHHHHHHHHc-------------CCCEEEEEecCCcCCCccc-c------------
Confidence 111 1111111 12344444455431 3567889999887543210 0
Q ss_pred ccccccccccCHHHHHHHHhh-cCccEEEecCCCCCceeeccCCCeeEEecc
Q psy2930 216 KKFRQRWECISKESTDMLLDY-LNPRLVIDGHTHNGCHKYHAYGKVHEYTVP 266 (293)
Q Consensus 216 ~~~~~~~~~l~~~~~~~ll~~-~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~ 266 (293)
........++.++ .++++||+||+|...... ..++++++.++
T Consensus 203 --------~~~~~~~~~la~~~~~vD~IlgGHsH~~~~~~-~~~~~~v~q~g 245 (277)
T cd07410 203 --------LTGENAAYELAEEVPGIDAILTGHQHRRFPGP-TVNGVPVVQPG 245 (277)
T ss_pred --------cCCccHHHHHHhcCCCCcEEEeCCCccccccC-CcCCEEEEcCC
Confidence 0001123455555 479999999999886531 22355555444
No 65
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=99.13 E-value=6.6e-11 Score=94.87 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=45.2
Q ss_pred EEEecCCcCCCCCCch-hHHHHhHHHHHHHHHHHHHhc--CCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 16 IFIADTHLLGPFRGHW-FDKLRREWQMYKTFQTAVALH--QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 16 ~~iSD~H~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
.++||+|+|....... .....+...+.+++.+.+.+. ++|.|+++||+++.+... .+ .+.+.+ .+.
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~---~~---~~~l~~-----~~~ 70 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAG---TE---LELLSR-----LNG 70 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChH---HH---HHHHHh-----CCC
Confidence 5799999987632110 000011112334444444443 789999999999976421 11 222322 345
Q ss_pred eEEEecCCCCCC
Q psy2930 93 ELHVVPGNHDMG 104 (293)
Q Consensus 93 ~~~~v~GNHD~~ 104 (293)
|++.|+||||..
T Consensus 71 ~~~~v~GNHD~~ 82 (168)
T cd07390 71 RKHLIKGNHDSS 82 (168)
T ss_pred CeEEEeCCCCch
Confidence 899999999974
No 66
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=99.10 E-value=1.5e-08 Score=86.51 Aligned_cols=174 Identities=17% Similarity=0.134 Sum_probs=89.2
Q ss_pred cCCCEEEEcCccCCCCccCChhhHH-----HHHHHHHhhhcC--CCCceEEEecCCCCCCCCCCCCchhHHHHHHHh-CC
Q psy2930 52 HQPEHIFVLGDLLDEGQYVGGEDFD-----NYVRRFYSLFST--PDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAF-NS 123 (293)
Q Consensus 52 ~~pd~vi~~GDl~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~-~~ 123 (293)
.++|+||++||+.........+... .....|.+.+.. ..++|+++|.||||.. ..+.+.. +.
T Consensus 27 ~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~GNHE~~----------~~l~~l~~gg 96 (262)
T cd00844 27 TKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIGGNHEAS----------NYLWELPYGG 96 (262)
T ss_pred CCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEECCCCCCH----------HHHHhhcCCC
Confidence 4799999999997644322111000 012223333221 3567789999999952 1111111 11
Q ss_pred ---C------CcceEEeCCEEEEEEeceeccCC----CCCCCchhHHHHHHHH-------HHhhhcccCCCCCccccCCC
Q psy2930 124 ---S------MVKLLSIKGSYFVLINSMALEGD----GCFLCKPAQDRISLIS-------AKLKCCRKDRECPKSMKLGS 183 (293)
Q Consensus 124 ---~------~~~~~~~~~~~~i~lds~~~~~~----~~~~~~~~~~~l~~l~-------~~l~~~~~~~~~~~~~~~~~ 183 (293)
+ ...++.++|++|.++.+..-... ........+.++..+- ..|... .
T Consensus 97 ~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~~~rs~y~~r~~~~~kl~~~-------------~ 163 (262)
T cd00844 97 WVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSEDTKRSAYHVRNIEVFKLKQL-------------K 163 (262)
T ss_pred eecCcEEEecCCCEEEECCeEEEEecccccccccccccccCCCCCHHHHHHhhhhhHHHHHHHHhc-------------C
Confidence 1 13567789999999854331111 0001112334443321 112111 2
Q ss_pred CCCCEEeeccCCCcCCCCCCCCCCCchhhhhccccccc--ccccCHHHHHHHHhhcCccEEEecCCCCCce
Q psy2930 184 YSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQR--WECISKESTDMLLDYLNPRLVIDGHTHNGCH 252 (293)
Q Consensus 184 ~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~ 252 (293)
...-|+++|.||....... +..........+.+. -..+......++++..+|+++|+||.|....
T Consensus 164 ~~vDIlLSHdWP~gI~~~~----~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryhf~gH~H~~f~ 230 (262)
T cd00844 164 QPIDIFLSHDWPRGIYKHG----DKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFSAHLHVKFA 230 (262)
T ss_pred CCCcEEEeCCCCcchhhcc----chHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEEEEecCCcccc
Confidence 3467999999996543211 000000000000000 0134556788999999999999999999665
No 67
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=99.10 E-value=6.9e-09 Score=87.92 Aligned_cols=209 Identities=14% Similarity=0.139 Sum_probs=111.1
Q ss_pred EEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHH-----------hcCCCEEEEcCccCCCCccCC-----------
Q psy2930 14 KAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVA-----------LHQPEHIFVLGDLLDEGQYVG----------- 71 (293)
Q Consensus 14 ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~pd~vi~~GDl~~~~~~~~----------- 71 (293)
.++++||+|+|+...... + .+.+.+++. ..+...+|++||.++......
T Consensus 1 ~i~~vSgL~ig~~~~~~~--~-------l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~ 71 (257)
T cd07387 1 YIALVSGLGLGGNAESSL--S-------LQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTK 71 (257)
T ss_pred CEEEEcccccCCCccchH--H-------HHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhcccc
Confidence 379999999988743221 1 122344443 235568999999999543211
Q ss_pred ------hhhHHHHHHHHHhhhcCCCCceEEEecCCCCCCCCC-CCCchhHHHHHHH------hCCCCcceEEeCCEEEEE
Q psy2930 72 ------GEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHY-RLHPYLNDRFSRA------FNSSMVKLLSIKGSYFVL 138 (293)
Q Consensus 72 ------~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~ 138 (293)
.+++.. ++.|..-+ ...+||.++|||||-.... ...+.....|... -.-.+++.+.++|++|++
T Consensus 72 ~~~~~~~~~~~~-ld~~l~~l--~~~i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~~~~~~~~vtNP~~~~i~g~~vLg 148 (257)
T cd07387 72 KSSAASVEAVKE-LDNFLSQL--ASSVPVDLMPGEFDPANHSLPQQPLHRCLFPKSSNYSTLNLVTNPYEFSIDGVRVLG 148 (257)
T ss_pred ccchhhHHHHHH-HHHHHHhh--hcCCeEEECCCCCCcccccCCCCCCCHHHhhcccccCCcEEeCCCeEEEECCEEEEE
Confidence 111222 22222222 4689999999999985422 2222223334321 111257889999999999
Q ss_pred EeceeccCC-CCCCCchhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhccc
Q psy2930 139 INSMALEGD-GCFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKK 217 (293)
Q Consensus 139 lds~~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~ 217 (293)
..+....-- .+. .....++.+++.|+-. |..|.......|.+.. +++
T Consensus 149 tsGqni~Di~ky~---~~~~~l~~me~~L~wr----------------------HlaPTaPDTL~~yP~~-----~~D-- 196 (257)
T cd07387 149 TSGQNVDDILKYS---SLESRLDILERTLKWR----------------------HIAPTAPDTLWCYPFT-----DRD-- 196 (257)
T ss_pred ECCCCHHHHHHhC---CCCCHHHHHHHHHHhc----------------------ccCCCCCCccccccCC-----CCC--
Confidence 744332211 111 1123355555555422 4443222222232210 000
Q ss_pred ccccccccCHHHHHHHHhhcCccEEEecCCCCCceeecc---CCCeeEEeccceeccCCCCCceEEEEEe
Q psy2930 218 FRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKYHA---YGKVHEYTVPSFSWRNKNNPSFLMGYVV 284 (293)
Q Consensus 218 ~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~~~---~~~~~~~~~~s~~~~~~~~p~f~~~~~~ 284 (293)
..++ + .-|+++|+||.|........ ...+..+++|+|+- .....++.+.
T Consensus 197 ----pfvi---------~-~~PhVyf~Gnq~~f~t~~~~~~~~~~v~lv~vP~Fs~----t~~~vlvdl~ 248 (257)
T cd07387 197 ----PFIL---------E-ECPHVYFAGNQPKFGTKLVEGEEGQRVLLVCVPSFSK----TGTAVLVNLR 248 (257)
T ss_pred ----ceee---------c-CCCCEEEeCCCcceeeeEEEcCCCCeEEEEEeCCcCc----CCEEEEEECC
Confidence 1122 1 14999999999998765421 22589999999862 3345555554
No 68
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.08 E-value=1.1e-09 Score=90.79 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=33.9
Q ss_pred cCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCC
Q psy2930 52 HQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMG 104 (293)
Q Consensus 52 ~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~ 104 (293)
.+.|.++++||+++.|. ...+....+.++..... ..+.++++++||||..
T Consensus 31 ~~~d~lv~lGD~vdrG~--~~~~vl~~l~~l~~~~~-~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 31 GGSTHLVQLGDIFDRGP--DVIEILWLLYKLEQEAA-KAGGKVHFLLGNHELM 80 (208)
T ss_pred CCCcEEEEECCCcCCCc--CHHHHHHHHHHHHHHHH-hcCCeEEEeeCCCcHH
Confidence 36899999999999886 33344444444432221 2456899999999974
No 69
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=99.05 E-value=4.6e-08 Score=83.89 Aligned_cols=83 Identities=14% Similarity=0.214 Sum_probs=43.3
Q ss_pred eEEEEEecCCcCCCCC-CchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCC
Q psy2930 13 IKAIFIADTHLLGPFR-GHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDG 91 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (293)
++|+++||+|...... .... -+. ++ .++.+.+++.++++++.+||++..........-....+.+.. .+
T Consensus 1 i~il~~~D~H~~~~~~~~~~~-g~~---~l-~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~-----~g 70 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGI-GYA---KL-ATYKKEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIMNA-----VG 70 (257)
T ss_pred CEEEEeccCcccccCCCCccc-cHH---HH-HHHHHHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHHHh-----cC
Confidence 5899999999743221 1100 011 12 222333333368999999999985432111111122222322 34
Q ss_pred ceEEEecCCCCCCCC
Q psy2930 92 TELHVVPGNHDMGFH 106 (293)
Q Consensus 92 ~~~~~v~GNHD~~~~ 106 (293)
.. ++++||||+.++
T Consensus 71 ~d-~~~~GNHefd~G 84 (257)
T cd07408 71 YD-AVTPGNHEFDYG 84 (257)
T ss_pred Cc-EEccccccccCC
Confidence 44 467899998653
No 70
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=99.05 E-value=3.5e-10 Score=91.05 Aligned_cols=84 Identities=24% Similarity=0.420 Sum_probs=53.6
Q ss_pred EEEecCCcCCCCC----CchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCC
Q psy2930 16 IFIADTHLLGPFR----GHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDG 91 (293)
Q Consensus 16 ~~iSD~H~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (293)
+++||+|+|.... +..... ...+...+.+.+.+++.+||.|+++||+++.........+.. .. +.... ..+
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~-~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~-~~-~~~~~--~~~ 75 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPR-GQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEE-VA-FLRLL--AKD 75 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCc-ccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHH-HH-HHHhc--cCC
Confidence 5799999986531 111111 112245667778888899999999999998654333222222 11 22222 467
Q ss_pred ceEEEecCCCCCC
Q psy2930 92 TELHVVPGNHDMG 104 (293)
Q Consensus 92 ~~~~~v~GNHD~~ 104 (293)
+++++++||||..
T Consensus 76 ~~v~~i~GNHD~~ 88 (172)
T cd07391 76 VDVILIRGNHDGG 88 (172)
T ss_pred CeEEEEcccCccc
Confidence 8999999999985
No 71
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=99.00 E-value=2.4e-08 Score=92.68 Aligned_cols=246 Identities=10% Similarity=0.097 Sum_probs=112.1
Q ss_pred CCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCcc--------------------
Q psy2930 10 INNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQY-------------------- 69 (293)
Q Consensus 10 ~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~-------------------- 69 (293)
...+||++.|+-+..... . ..+.+++++.+||++|++||.+.....
T Consensus 103 ~~~~r~a~~SC~~~~~~~----~----------~~~~~~a~~~~~D~~l~lGD~IY~d~~~~~~~~~~~~~~r~~~p~~~ 168 (453)
T PF09423_consen 103 PDPFRFAFGSCQNYEDGY----F----------PAYRRIAERDDPDFVLHLGDQIYEDGGGGYGNLSRRPIGRAPEPAHE 168 (453)
T ss_dssp ---EEEEEE----CCC-----------------HHHHHHTT-S--SEEEE-S-SS----TTSS--TT---S-----SSSS
T ss_pred CCceEEEEECCCCcccCh----H----------HHHHhhhccCCCcEEEEeCCeeeccCCcccccccccccccccccccc
Confidence 346999999999873322 1 223334444689999999998885321
Q ss_pred -CChhhHHHHH------HHHHhhhcCCCCceEEEecCCCCCCCCCC----CC-----c-------hhHHHHHHHhCCC--
Q psy2930 70 -VGGEDFDNYV------RRFYSLFSTPDGTELHVVPGNHDMGFHYR----LH-----P-------YLNDRFSRAFNSS-- 124 (293)
Q Consensus 70 -~~~~~~~~~~------~~~~~~~~~~~~~~~~~v~GNHD~~~~~~----~~-----~-------~~~~~~~~~~~~~-- 124 (293)
.+.+.++..+ ..+++++ ..+|++++.=.||+..+.. .. . .....|..+.+..
T Consensus 169 ~~~l~~yR~~y~~~~~~p~l~~~~---~~~P~~~iwDDHdi~nn~~~~~~~~~~~~~~~~~~~~~~a~~ay~e~~p~r~~ 245 (453)
T PF09423_consen 169 AETLDDYRRRYRQYRSDPDLRRLH---ANVPWIMIWDDHDIGNNWWGDGAENHQDTSGDFQDRRRAAYQAYFEYQPVRNP 245 (453)
T ss_dssp --SHHHHHHHHHHHHT-HHHHHHH---HHSEEEE---STTTSTT-BTTB-STT---HHHHHHHHHHHHHHHHHHS---GG
T ss_pred cccHHHHHHHHHHHcCCHHHHHHh---hcccEEEEccCceecccccCCccccccccccchHHHHHHHHHHHHhhcCccCC
Confidence 1112222222 2233333 4679999999999954321 00 0 1112222222211
Q ss_pred --------CcceEEeCC-EEEEEEeceeccCCC--------------CCCCchhHHHHHHHHHHhhhcccCCCCCccccC
Q psy2930 125 --------MVKLLSIKG-SYFVLINSMALEGDG--------------CFLCKPAQDRISLISAKLKCCRKDRECPKSMKL 181 (293)
Q Consensus 125 --------~~~~~~~~~-~~~i~lds~~~~~~~--------------~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~ 181 (293)
.++.+.+++ +.|++||+..+-... ....-+++.|++||++.|..+
T Consensus 246 ~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~s------------ 313 (453)
T PF09423_consen 246 DPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLASS------------ 313 (453)
T ss_dssp G-BTTB----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHHH-------------
T ss_pred CccCCCCceEEEEecCCceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHhcC------------
Confidence 256788999 999999998776531 111236789999999999975
Q ss_pred CCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCcc--EEEecCCCCCceee-ccCC
Q psy2930 182 GSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPR--LVIDGHTHNGCHKY-HAYG 258 (293)
Q Consensus 182 ~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~--lvl~GH~H~~~~~~-~~~~ 258 (293)
....+|+++-.|+............. .....| ++| ...++.+.++|++.+++ ++|+|-.|...... ....
T Consensus 314 -~a~~kvi~s~v~~~~~~~~~~~~~~~----~~~d~W-~g~-~~er~~Ll~~l~~~~~~~vV~LSGDvH~~~~~~~~~~~ 386 (453)
T PF09423_consen 314 -QATWKVIGSSVPFSPLNFPDAAEGLP----FNMDSW-DGY-PAERQRLLDFLRESGIRNVVFLSGDVHASAASRIPPDD 386 (453)
T ss_dssp --SSEEEEE-SS--S---SS-SS-S------EETTSG-GGS-HHHHHHHHHHHHHTT---EEEEE-SSSSEEEEEEESST
T ss_pred -CCcEEEEEeCCceecccccccccccc----cCCCch-hhC-HHHHHHHHHHHHhhCCCCEEEEecCcchheeeeccccc
Confidence 45678888887775433211000000 000011 112 12344556666666664 88999999997644 1111
Q ss_pred ---------CeeEEeccceeccC------------------------CCCCceEEEEEecCCceee
Q psy2930 259 ---------KVHEYTVPSFSWRN------------------------KNNPSFLMGYVVENSSGVN 291 (293)
Q Consensus 259 ---------~~~~~~~~s~~~~~------------------------~~~p~f~~~~~~~~~~~~~ 291 (293)
.+.++++++++... ...-||.+++++++.++++
T Consensus 387 ~~~~~~~~~~~~Ef~~s~vts~~~~~~~~~~~~~~~~~~np~~~~~~~~~~G~~~i~~~~~~~~~~ 452 (453)
T PF09423_consen 387 ADPPDGPGSVGVEFTSSSVTSPGFGLGTSPALDRALDKANPHLKFADLRNFGYVEIDITPERVTAE 452 (453)
T ss_dssp T---TTS-EEEEEEE---SSTT-S-BSB-TTHHH-HHHH-TTEEEEE-B-EEEEEEEEETTEEEEE
T ss_pred ccccCCCCCeEEEEECCCccCCCcccccchhhhhhhhhcCCceEEeECCCCcEEEEEEccceEEEE
Confidence 36888888765211 0234899999998887764
No 72
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.85 E-value=9.3e-07 Score=76.13 Aligned_cols=86 Identities=12% Similarity=0.070 Sum_probs=43.3
Q ss_pred eEEEEEecCCcCCCCCC-c--------hhHHHHhHHHHHHHHHHHHHhc-CCCEE-EEcCccCCCCccCChhhHHHHHHH
Q psy2930 13 IKAIFIADTHLLGPFRG-H--------WFDKLRREWQMYKTFQTAVALH-QPEHI-FVLGDLLDEGQYVGGEDFDNYVRR 81 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~-~pd~v-i~~GDl~~~~~~~~~~~~~~~~~~ 81 (293)
++|++++|+|.--.... . ...... ......++.+.+++. .+|.+ +.+||+++.............++.
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~g-G~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ 79 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAG-GFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGEALYTRGQAMVDA 79 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccC-cHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChHHhhcCChhHHHH
Confidence 47999999998532210 0 000000 111223445555556 89987 469999986542111111222222
Q ss_pred HHhhhcCCCCceEEEecCCCCCCCC
Q psy2930 82 FYSLFSTPDGTELHVVPGNHDMGFH 106 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~v~GNHD~~~~ 106 (293)
+.. .++.++.||||+..+
T Consensus 80 l~~-------~g~da~~GNHefd~g 97 (264)
T cd07411 80 LNA-------LGVDAMVGHWEFTYG 97 (264)
T ss_pred HHh-------hCCeEEecccccccC
Confidence 222 233333399998653
No 73
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.81 E-value=3.9e-07 Score=93.52 Aligned_cols=81 Identities=19% Similarity=0.127 Sum_probs=46.1
Q ss_pred CCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEE-cCccCCCCccCChhhHHHHHHHHHhhhc
Q psy2930 9 SINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFV-LGDLLDEGQYVGGEDFDNYVRRFYSLFS 87 (293)
Q Consensus 9 ~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~-~GDl~~~~~~~~~~~~~~~~~~~~~~~~ 87 (293)
+...++|++++|+|..-. . ..+ ...+.+.+++.+|+.|++ +||++..............++.+.. +
T Consensus 657 ~~~~l~Il~~nD~Hg~l~---g-~~r-------~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~-l- 723 (1163)
T PRK09419 657 DNWELTILHTNDFHGHLD---G-AAK-------RVTKIKEVKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKE-M- 723 (1163)
T ss_pred CceEEEEEEEeecccCCC---C-HHH-------HHHHHHHHHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHhC-c-
Confidence 445599999999994221 1 111 123344455668888877 9999985432211111222333332 2
Q ss_pred CCCCceEEEecCCCCCCCC
Q psy2930 88 TPDGTELHVVPGNHDMGFH 106 (293)
Q Consensus 88 ~~~~~~~~~v~GNHD~~~~ 106 (293)
+. -++++||||+.++
T Consensus 724 ---g~-d~~~~GNHEfd~g 738 (1163)
T PRK09419 724 ---GY-DASTFGNHEFDWG 738 (1163)
T ss_pred ---CC-CEEEecccccccC
Confidence 22 2679999999764
No 74
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.76 E-value=2e-08 Score=84.00 Aligned_cols=83 Identities=19% Similarity=0.095 Sum_probs=52.3
Q ss_pred EEEEEecCCcCCCCC----CchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCC
Q psy2930 14 KAIFIADTHLLGPFR----GHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTP 89 (293)
Q Consensus 14 ri~~iSD~H~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (293)
+.+++||+|+|.... +...... +.....+.+.+.+++.+||.|+++||+++..... ..+....+.+++ +
T Consensus 16 ~~LvisDlHLG~~~~~~~~Gi~~P~~-~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~--~~~~~~~~~l~~-~--- 88 (225)
T TIGR00024 16 DKAVIADLHLGFERHLDEQGVMVPGF-QFREIIERALSIADKYGIEALIINGDLKHEFKKG--LEWRFIREFIEV-T--- 88 (225)
T ss_pred CeEEEEeccCCCHHHHHhcCCcCChh-HHHHHHHHHHHHHhhcCCCEEEEcCccccccCCh--HHHHHHHHHHHh-c---
Confidence 689999999986431 1111111 1223555667777788999999999999865421 233332223332 2
Q ss_pred CCceEEEecCCCCCC
Q psy2930 90 DGTELHVVPGNHDMG 104 (293)
Q Consensus 90 ~~~~~~~v~GNHD~~ 104 (293)
..+++.|+||||..
T Consensus 89 -~~~v~~V~GNHD~~ 102 (225)
T TIGR00024 89 -FRDLILIRGNHDAL 102 (225)
T ss_pred -CCcEEEECCCCCCc
Confidence 35899999999964
No 75
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=98.76 E-value=6e-08 Score=81.00 Aligned_cols=64 Identities=19% Similarity=0.294 Sum_probs=39.7
Q ss_pred EEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHH-hcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 14 KAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVA-LHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 14 ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
|++++||+|.. ++. + +++.+.+. ..+.|.++++||+++.|... . +.++.+.+ .
T Consensus 16 ri~visDiHg~-------~~~------l-~~~l~~~~~~~~~d~l~~lGD~vdrG~~~--~---~~l~~l~~-------~ 69 (218)
T PRK09968 16 HIWVVGDIHGE-------YQL------L-QSRLHQLSFCPETDLLISVGDNIDRGPES--L---NVLRLLNQ-------P 69 (218)
T ss_pred eEEEEEeccCC-------HHH------H-HHHHHhcCCCCCCCEEEECCCCcCCCcCH--H---HHHHHHhh-------C
Confidence 89999999971 111 1 11222222 24689999999999988632 1 22222221 1
Q ss_pred eEEEecCCCCC
Q psy2930 93 ELHVVPGNHDM 103 (293)
Q Consensus 93 ~~~~v~GNHD~ 103 (293)
.+++|.||||.
T Consensus 70 ~~~~v~GNHE~ 80 (218)
T PRK09968 70 WFISVKGNHEA 80 (218)
T ss_pred CcEEEECchHH
Confidence 46899999996
No 76
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=98.75 E-value=1.4e-07 Score=78.82 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=39.8
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHh-cCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCC
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL-HQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDG 91 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (293)
.|+.++||+|.... ...++.+.+.. .+.|.++++||+++.|+.+ . +.++.+.+ .
T Consensus 17 ~ri~vigDIHG~~~--------------~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s--~---~vl~~l~~-----~- 71 (218)
T PRK11439 17 RHIWLVGDIHGCFE--------------QLMRKLRHCRFDPWRDLLISVGDLIDRGPQS--L---RCLQLLEE-----H- 71 (218)
T ss_pred CeEEEEEcccCCHH--------------HHHHHHHhcCCCcccCEEEEcCcccCCCcCH--H---HHHHHHHc-----C-
Confidence 48999999999111 11112222222 2578999999999988732 1 22222322 1
Q ss_pred ceEEEecCCCCC
Q psy2930 92 TELHVVPGNHDM 103 (293)
Q Consensus 92 ~~~~~v~GNHD~ 103 (293)
.+++|.||||.
T Consensus 72 -~~~~v~GNHE~ 82 (218)
T PRK11439 72 -WVRAVRGNHEQ 82 (218)
T ss_pred -CceEeeCchHH
Confidence 35789999996
No 77
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.71 E-value=2.1e-06 Score=74.65 Aligned_cols=87 Identities=11% Similarity=0.038 Sum_probs=43.2
Q ss_pred eEEEEEecCCcCCCCCCc--------hhHHHHhHHHHHHHHHHHHHhcCCCE-EEEcCccCCCCccCChhhHHHHHHHHH
Q psy2930 13 IKAIFIADTHLLGPFRGH--------WFDKLRREWQMYKTFQTAVALHQPEH-IFVLGDLLDEGQYVGGEDFDNYVRRFY 83 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~pd~-vi~~GDl~~~~~~~~~~~~~~~~~~~~ 83 (293)
++|++++|+|..-..... ...... ......++.+.+++..++. ++.+||.+......+...-....+.+.
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~g-G~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln 79 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYG-GFARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMN 79 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccC-CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHH
Confidence 589999999975321110 000000 0111223444444556774 555999998654322111122222232
Q ss_pred hhhcCCCCceEEEecCCCCCCCC
Q psy2930 84 SLFSTPDGTELHVVPGNHDMGFH 106 (293)
Q Consensus 84 ~~~~~~~~~~~~~v~GNHD~~~~ 106 (293)
. .+.. ++++||||+.++
T Consensus 80 ~-----~g~D-~~~lGNHefd~G 96 (281)
T cd07409 80 L-----LGYD-AMTLGNHEFDDG 96 (281)
T ss_pred h-----cCCC-EEEeccccccCC
Confidence 2 2344 566799999764
No 78
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=98.71 E-value=5.4e-08 Score=80.44 Aligned_cols=88 Identities=25% Similarity=0.389 Sum_probs=61.0
Q ss_pred eEEEEEecCCcCCCCC----CchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcC
Q psy2930 13 IKAIFIADTHLLGPFR----GHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFST 88 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (293)
-+.+++||+|+|-... +..+..+. ...+.+.+.+.+...+|+.||++||+.+........++.. ..+|.+.+.
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~-~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~-~~~f~~~~~- 96 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQ-TDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEE-VREFLELLD- 96 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchh-HHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHH-HHHHHHHhc-
Confidence 4789999999985431 22222222 2345666777888999999999999999866544444444 566666663
Q ss_pred CCCceEEEecCCCCCCC
Q psy2930 89 PDGTELHVVPGNHDMGF 105 (293)
Q Consensus 89 ~~~~~~~~v~GNHD~~~ 105 (293)
. ..++++.||||-+.
T Consensus 97 -~-~evi~i~GNHD~~i 111 (235)
T COG1407 97 -E-REVIIIRGNHDNGI 111 (235)
T ss_pred -c-CcEEEEeccCCCcc
Confidence 2 25999999999863
No 79
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.70 E-value=4.7e-06 Score=72.23 Aligned_cols=89 Identities=13% Similarity=0.082 Sum_probs=44.1
Q ss_pred CceEEEEEecCCcCCCCC---CchhHHHHhHHHHHHHHHHHHHhcCCC-EEEEcCccCCCCccCChh--hHHHHHHHHHh
Q psy2930 11 NNIKAIFIADTHLLGPFR---GHWFDKLRREWQMYKTFQTAVALHQPE-HIFVLGDLLDEGQYVGGE--DFDNYVRRFYS 84 (293)
Q Consensus 11 ~~~ri~~iSD~H~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pd-~vi~~GDl~~~~~~~~~~--~~~~~~~~~~~ 84 (293)
.+++|++++|+|.--... ......+.+-..+.+.+.+..++..++ +++..||.+++.....-. .-....+.+ .
T Consensus 4 ~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~m-N 82 (282)
T cd07407 4 GDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPIF-R 82 (282)
T ss_pred ceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHHH-H
Confidence 458999999999532110 000001111011223333333334565 567799999965432211 122222222 2
Q ss_pred hhcCCCCceEEEecCCCCCCC
Q psy2930 85 LFSTPDGTELHVVPGNHDMGF 105 (293)
Q Consensus 85 ~~~~~~~~~~~~v~GNHD~~~ 105 (293)
.+ +.. ++++||||+.+
T Consensus 83 ~m----gyD-a~tlGNHEFd~ 98 (282)
T cd07407 83 MM----PYD-LLTIGNHELYN 98 (282)
T ss_pred hc----CCc-EEeecccccCc
Confidence 22 211 89999999964
No 80
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=98.68 E-value=1.4e-06 Score=66.61 Aligned_cols=81 Identities=22% Similarity=0.267 Sum_probs=47.6
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHH-HHHHHHhcCC-CEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCC
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKT-FQTAVALHQP-EHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPD 90 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p-d~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (293)
..+-++||+|++....-..- .+..-..+... +..+.+..+| |.|.++||+..+.+. +..+..+.+.+ .
T Consensus 4 ~mmyfisDtHfgh~nvi~~~-pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~------~~~a~~IlerL---n 73 (186)
T COG4186 4 TMMYFISDTHFGHKNVISMR-PFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANR------ERAAGLILERL---N 73 (186)
T ss_pred eEEEEecccccCCcceeecC-CCCCHHHHhHHHHHhHHhcCCccceEEEecccccccch------hhHHHHHHHHc---C
Confidence 35788999999977531110 01111112222 3334445556 889999999986542 22344455555 3
Q ss_pred CceEEEecCCCCCC
Q psy2930 91 GTELHVVPGNHDMG 104 (293)
Q Consensus 91 ~~~~~~v~GNHD~~ 104 (293)
|.+ +.|+||||-.
T Consensus 74 Grk-hlv~GNhDk~ 86 (186)
T COG4186 74 GRK-HLVPGNHDKC 86 (186)
T ss_pred CcE-EEeeCCCCCC
Confidence 544 9999999963
No 81
>KOG2310|consensus
Probab=98.66 E-value=4e-06 Score=76.13 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=62.2
Q ss_pred CCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhh-cC
Q psy2930 10 INNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLF-ST 88 (293)
Q Consensus 10 ~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~-~~ 88 (293)
+..+||++.||.|+|-....... -...+...+.+..+....+.|+|+..|||++...++ .+.+...++-|+.-+ +.
T Consensus 11 entirILVaTD~HlGY~EkD~vr--g~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPS-r~~L~~~i~lLRryClgd 87 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVR--GDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPS-RKTLHRCLELLRRYCLGD 87 (646)
T ss_pred ccceEEEEeecCccccccCCccc--ccchHHHHHHHHHHHHhcCCcEEEecCcccccCCcc-HHHHHHHHHHHHHHccCC
Confidence 46799999999999876543211 011334556677777788999999999999976643 233333344444321 00
Q ss_pred ------------------------------CCCceEEEecCCCCCCC
Q psy2930 89 ------------------------------PDGTELHVVPGNHDMGF 105 (293)
Q Consensus 89 ------------------------------~~~~~~~~v~GNHD~~~ 105 (293)
.-++||+.|-||||-.-
T Consensus 88 kP~~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpS 134 (646)
T KOG2310|consen 88 KPVQLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPS 134 (646)
T ss_pred CceeeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCc
Confidence 12899999999999743
No 82
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.65 E-value=1.3e-05 Score=69.99 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=41.8
Q ss_pred eEEEEEecCCcCCCCCCc----hhHHHHhHHHHHHHHHHHHHhcCC-CEEEEcCccCCCCcc-CChhhHHHHHHHHHhhh
Q psy2930 13 IKAIFIADTHLLGPFRGH----WFDKLRREWQMYKTFQTAVALHQP-EHIFVLGDLLDEGQY-VGGEDFDNYVRRFYSLF 86 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p-d~vi~~GDl~~~~~~-~~~~~~~~~~~~~~~~~ 86 (293)
++|++++|+|..-..... ...-+. ++ ..+.+.+++..+ .+++.+||++..... .....-...++.+..
T Consensus 1 i~il~tnD~Hg~~~~~~~~~~~~~gG~a---rl-~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~-- 74 (288)
T cd07412 1 VQILAINDFHGRLEPPGKVVTVPAGGAA---YL-AAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNA-- 74 (288)
T ss_pred CeEEEEeccccCccCCCCccccccccHH---HH-HHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHh--
Confidence 589999999953221110 000011 12 223333444455 489999999974432 110000122233322
Q ss_pred cCCCCceEEEecCCCCCCCC
Q psy2930 87 STPDGTELHVVPGNHDMGFH 106 (293)
Q Consensus 87 ~~~~~~~~~~v~GNHD~~~~ 106 (293)
.+.. ++++||||+.++
T Consensus 75 ---~g~D-a~t~GNHefd~G 90 (288)
T cd07412 75 ---MGVD-ASAVGNHEFDEG 90 (288)
T ss_pred ---hCCe-eeeecccccccC
Confidence 2333 578899998753
No 83
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.63 E-value=5.9e-06 Score=71.91 Aligned_cols=84 Identities=20% Similarity=0.100 Sum_probs=41.4
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHh-----cCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL-----HQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFS 87 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~ 87 (293)
++|++++|+|..-........-+.+ + .++.+.+++ ...-+++.+||++.+........-...++.+ ..+
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar---~-a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~-n~~- 74 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAA---Q-KTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDFRGM-NLV- 74 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHH---H-HHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHHHHH-Hhh-
Confidence 5799999999854221110000111 1 122222222 2345899999999743321111112222222 322
Q ss_pred CCCCceEEEecCCCCCCCC
Q psy2930 88 TPDGTELHVVPGNHDMGFH 106 (293)
Q Consensus 88 ~~~~~~~~~v~GNHD~~~~ 106 (293)
+.- ++++||||+.++
T Consensus 75 ---g~D-a~~~GNHEfD~G 89 (285)
T cd07405 75 ---GYD-AMAVGNHEFDNP 89 (285)
T ss_pred ---CCc-EEeecccccccC
Confidence 333 567799999764
No 84
>PHA02239 putative protein phosphatase
Probab=98.53 E-value=3.1e-07 Score=77.38 Aligned_cols=70 Identities=24% Similarity=0.402 Sum_probs=44.7
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHh-c-CCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCC
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL-H-QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPD 90 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (293)
||+++|||+|. .. +. + ..+.+.+.. . ..|.|+++||+++.|..+ .+.++.+.+.. ..
T Consensus 1 m~~~~IsDIHG-~~------~~------l-~~ll~~i~~~~~~~d~li~lGD~iDrG~~s-----~~v~~~l~~~~--~~ 59 (235)
T PHA02239 1 MAIYVVPDIHG-EY------QK------L-LTIMDKINNERKPEETIVFLGDYVDRGKRS-----KDVVNYIFDLM--SN 59 (235)
T ss_pred CeEEEEECCCC-CH------HH------H-HHHHHHHhhcCCCCCEEEEecCcCCCCCCh-----HHHHHHHHHHh--hc
Confidence 68999999995 21 11 2 222333332 2 359999999999987632 23344454443 23
Q ss_pred CceEEEecCCCCC
Q psy2930 91 GTELHVVPGNHDM 103 (293)
Q Consensus 91 ~~~~~~v~GNHD~ 103 (293)
+.++++++||||.
T Consensus 60 ~~~~~~l~GNHE~ 72 (235)
T PHA02239 60 DDNVVTLLGNHDD 72 (235)
T ss_pred CCCeEEEECCcHH
Confidence 4578999999996
No 85
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=98.43 E-value=8.7e-06 Score=71.70 Aligned_cols=84 Identities=11% Similarity=0.143 Sum_probs=41.7
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHh-cCCCEEEEcCccCCCCccCChh--------hHHHHHHHHH
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL-HQPEHIFVLGDLLDEGQYVGGE--------DFDNYVRRFY 83 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pd~vi~~GDl~~~~~~~~~~--------~~~~~~~~~~ 83 (293)
++|++++|+|......+... ++. .+.+.+.+..++ .+..+++.+||++..+...+.. .-.... .++
T Consensus 1 l~IlhtnD~Hg~~~~~gg~a-r~a---~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i-~~m 75 (313)
T cd08162 1 LQLLHTSDGESGLLAEDDAP-NFS---ALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADI-LIL 75 (313)
T ss_pred CeEEEecccccCccccCCHH-HHH---HHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHH-HHH
Confidence 57999999998543222211 111 111111111111 2345899999999865422100 001112 222
Q ss_pred hhhcCCCCceEEEecCCCCCCCC
Q psy2930 84 SLFSTPDGTELHVVPGNHDMGFH 106 (293)
Q Consensus 84 ~~~~~~~~~~~~~v~GNHD~~~~ 106 (293)
..+ +.. ++++||||+.++
T Consensus 76 N~~----g~D-a~tlGNHEFD~G 93 (313)
T cd08162 76 NAL----GVQ-AIALGNHEFDLG 93 (313)
T ss_pred hcc----CCc-EEeccccccccC
Confidence 222 222 789999999764
No 86
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=98.41 E-value=5.7e-07 Score=77.47 Aligned_cols=64 Identities=23% Similarity=0.312 Sum_probs=42.5
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHh----cCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcC
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL----HQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFST 88 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (293)
|++++|||+|..- .++.+.+++ .++|.++++||+++.|+.+ .+.++.+.+
T Consensus 1 M~~~vIGDIHG~~-----------------~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s-----~~vl~~l~~---- 54 (275)
T PRK00166 1 MATYAIGDIQGCY-----------------DELQRLLEKIDFDPAKDTLWLVGDLVNRGPDS-----LEVLRFVKS---- 54 (275)
T ss_pred CcEEEEEccCCCH-----------------HHHHHHHHhcCCCCCCCEEEEeCCccCCCcCH-----HHHHHHHHh----
Confidence 6899999999711 112223332 3689999999999988632 222333333
Q ss_pred CCCceEEEecCCCCC
Q psy2930 89 PDGTELHVVPGNHDM 103 (293)
Q Consensus 89 ~~~~~~~~v~GNHD~ 103 (293)
.+.++++|.||||.
T Consensus 55 -l~~~~~~VlGNHD~ 68 (275)
T PRK00166 55 -LGDSAVTVLGNHDL 68 (275)
T ss_pred -cCCCeEEEecChhH
Confidence 23468999999997
No 87
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=98.37 E-value=2.6e-05 Score=74.09 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=27.1
Q ss_pred CCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCCCC
Q psy2930 53 QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFH 106 (293)
Q Consensus 53 ~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~~~ 106 (293)
..-+++.+||.+......+...-....+ +...+ +. =++++||||+.++
T Consensus 49 ~n~l~ldaGD~~~gs~~~~~~~g~~~i~-~~N~~----g~-Da~~lGNHEFd~G 96 (550)
T TIGR01530 49 KNALVLHAGDAIIGTLYFTLFGGRADAA-LMNAA----GF-DFFTLGNHEFDAG 96 (550)
T ss_pred CCeEEEECCCCCCCccchhhcCCHHHHH-HHhcc----CC-CEEEeccccccCC
Confidence 4468889999998544222111111222 22222 22 2889999999764
No 88
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=98.35 E-value=3e-05 Score=73.82 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=43.6
Q ss_pred CCCceEEEEEecCCcCCCCCC--c-hhHHHHhHHHHHHHHHHHHHh-cCCCEEEEcCccCCCCccCChhhHHHHHHHHHh
Q psy2930 9 SINNIKAIFIADTHLLGPFRG--H-WFDKLRREWQMYKTFQTAVAL-HQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYS 84 (293)
Q Consensus 9 ~~~~~ri~~iSD~H~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~-~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~ 84 (293)
...+++|++++|+|..-.... . -+.++. .+.+...+..++ ...-+++.+||.+.+.....-..-...++.+ .
T Consensus 31 ~~~~ltil~tnD~Hg~~~~~~~~~~G~a~~a---~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~m-N 106 (551)
T PRK09558 31 KTYKITILHTNDHHGHFWRNEYGEYGLAAQK---TLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGM-N 106 (551)
T ss_pred CceEEEEEEecccCCCccccccCCccHHHHH---HHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCCchhHHHH-h
Confidence 345699999999998543211 0 011111 111111111111 2346789999998854321111111112222 2
Q ss_pred hhcCCCCceEEEecCCCCCCCC
Q psy2930 85 LFSTPDGTELHVVPGNHDMGFH 106 (293)
Q Consensus 85 ~~~~~~~~~~~~v~GNHD~~~~ 106 (293)
.+ +.. ++++||||+.++
T Consensus 107 ~~----g~D-a~tlGNHEFD~G 123 (551)
T PRK09558 107 LI----GYD-AMAVGNHEFDNP 123 (551)
T ss_pred cC----CCC-EEcccccccCcC
Confidence 22 333 667799999764
No 89
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=98.28 E-value=2e-06 Score=72.66 Aligned_cols=42 Identities=31% Similarity=0.491 Sum_probs=28.6
Q ss_pred CCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 54 PEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 54 pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
.|.++++||+++.|.. . .+.++.+.++. . .-.++++.||||.
T Consensus 38 ~d~lv~lGDlIDrG~~--s---~evl~~l~~l~--~-~~~~~~v~GNHE~ 79 (234)
T cd07423 38 GRRAVFVGDLVDRGPD--S---PEVLRLVMSMV--A-AGAALCVPGNHDN 79 (234)
T ss_pred CCEEEEECCccCCCCC--H---HHHHHHHHHHh--h-CCcEEEEECCcHH
Confidence 6899999999998863 2 22334444432 1 1257899999996
No 90
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.25 E-value=4.4e-05 Score=72.12 Aligned_cols=91 Identities=13% Similarity=0.080 Sum_probs=48.6
Q ss_pred CCCceEEEEEecCCcCCCCCCc--hhHHHHhHHHHHHHHHHHHHhc-CCCEEEEcCccCCCCccCCh-hhHHHHHHHHHh
Q psy2930 9 SINNIKAIFIADTHLLGPFRGH--WFDKLRREWQMYKTFQTAVALH-QPEHIFVLGDLLDEGQYVGG-EDFDNYVRRFYS 84 (293)
Q Consensus 9 ~~~~~ri~~iSD~H~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~pd~vi~~GDl~~~~~~~~~-~~~~~~~~~~~~ 84 (293)
..-+++|++++|+|..-..... .... .-.+....++.+.+++. +..++|.+||++++....+. ..-....+ ++.
T Consensus 23 ~~~~l~ilhtnD~H~~l~~~~~~~~~~~-~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~-~mN 100 (517)
T COG0737 23 ETVKLTILHTNDLHGHLEPYDYDDDGDT-DGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVD-LLN 100 (517)
T ss_pred CceeEEEEEeccccccceeccccccCcc-cccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHH-HHh
Confidence 3456999999999986541100 0000 00112223344444444 55789999999996443221 11122222 223
Q ss_pred hhcCCCCceEEEecCCCCCCCC
Q psy2930 85 LFSTPDGTELHVVPGNHDMGFH 106 (293)
Q Consensus 85 ~~~~~~~~~~~~v~GNHD~~~~ 106 (293)
.+ +. =+++.|||++.++
T Consensus 101 ~m----~y-Da~tiGNHEFd~g 117 (517)
T COG0737 101 AL----GY-DAMTLGNHEFDYG 117 (517)
T ss_pred hc----CC-cEEeecccccccC
Confidence 23 11 1889999999764
No 91
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.24 E-value=2.3e-05 Score=66.77 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=44.6
Q ss_pred EEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCce
Q psy2930 14 KAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTE 93 (293)
Q Consensus 14 ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (293)
||+++.|+ +|.+... .+.+.+.+..++.++|++|..||....+...+ ...++.+.. .++-
T Consensus 1 ~ilfigdi-~g~~G~~----------~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~----~~~~~~L~~-----~G~D 60 (255)
T cd07382 1 KILFIGDI-VGKPGRK----------AVKEHLPKLKKEYKIDFVIANGENAAGGKGIT----PKIAKELLS-----AGVD 60 (255)
T ss_pred CEEEEEeC-CCHHHHH----------HHHHHHHHHHHHCCCCEEEECCccccCCCCCC----HHHHHHHHh-----cCCC
Confidence 58889998 4444221 23344555556679999999999988764333 222333333 3445
Q ss_pred EEEecCCCCCCCC
Q psy2930 94 LHVVPGNHDMGFH 106 (293)
Q Consensus 94 ~~~v~GNHD~~~~ 106 (293)
++..|||++...
T Consensus 61 -~iTlGNH~fD~g 72 (255)
T cd07382 61 -VITMGNHTWDKK 72 (255)
T ss_pred -EEEecccccCcc
Confidence 555599988654
No 92
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=98.22 E-value=3.6e-05 Score=74.04 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=44.2
Q ss_pred ceEEEEEecCCcCCCCCCchhHHHHh--HHHHHHHHHHHHHhc-CCCEEEEcCccCCCCccCChh--------hHHHHHH
Q psy2930 12 NIKAIFIADTHLLGPFRGHWFDKLRR--EWQMYKTFQTAVALH-QPEHIFVLGDLLDEGQYVGGE--------DFDNYVR 80 (293)
Q Consensus 12 ~~ri~~iSD~H~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~pd~vi~~GDl~~~~~~~~~~--------~~~~~~~ 80 (293)
.++|++++|+|.--.....+.+.... ...-..++.+.+++. ..-+++..||++.+....+-. .....++
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p~~~ 81 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVKNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHPVYK 81 (626)
T ss_pred eEEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCCCeEEEECCCcCCCccchhhhhhccccCCCcChHHH
Confidence 48999999999864322111100000 000112233333333 446899999999965422100 0011222
Q ss_pred HHHhhhcCCCCceEEEecCCCCCCCC
Q psy2930 81 RFYSLFSTPDGTELHVVPGNHDMGFH 106 (293)
Q Consensus 81 ~~~~~~~~~~~~~~~~v~GNHD~~~~ 106 (293)
.+. .+ +.- .+++||||+.++
T Consensus 82 ~mN-~l----gyD-a~tlGNHEFd~G 101 (626)
T TIGR01390 82 AMN-LL----KYD-VGNLGNHEFNYG 101 (626)
T ss_pred HHh-hc----Ccc-EEeccccccccc
Confidence 232 22 222 789999999764
No 93
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.19 E-value=8.2e-05 Score=72.98 Aligned_cols=90 Identities=12% Similarity=0.108 Sum_probs=45.4
Q ss_pred CceEEEEEecCCcCCCCCCchhHHHHh--HHHHHHHHHHHHHhcCC-CEEEEcCccCCCCccCChh---------hHHHH
Q psy2930 11 NNIKAIFIADTHLLGPFRGHWFDKLRR--EWQMYKTFQTAVALHQP-EHIFVLGDLLDEGQYVGGE---------DFDNY 78 (293)
Q Consensus 11 ~~~ri~~iSD~H~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p-d~vi~~GDl~~~~~~~~~~---------~~~~~ 78 (293)
-.++|++++|+|..-.....+.+.... ...-...+++.+++..+ -++|..||++.+....+-. .....
T Consensus 114 ~~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~ 193 (814)
T PRK11907 114 VDVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPM 193 (814)
T ss_pred eEEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCcchHH
Confidence 368999999999864322111110000 00011223333333333 5799999999964432100 00112
Q ss_pred HHHHHhhhcCCCCceEEEecCCCCCCCC
Q psy2930 79 VRRFYSLFSTPDGTELHVVPGNHDMGFH 106 (293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~v~GNHD~~~~ 106 (293)
++.+.. + +.- .+.+||||+.++
T Consensus 194 i~amN~-L----GyD-A~tLGNHEFDyG 215 (814)
T PRK11907 194 YAALEA-L----GFD-AGTLGNHEFNYG 215 (814)
T ss_pred HHHHhc-c----CCC-EEEechhhcccC
Confidence 333322 2 222 789999999764
No 94
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.19 E-value=5.5e-05 Score=78.00 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=44.7
Q ss_pred CceEEEEEecCCcCCCCCCchhHHHHh--HHHHHHHHHHHHHhcCCCEEEE-cCccCCCCccCC---------hhhHHHH
Q psy2930 11 NNIKAIFIADTHLLGPFRGHWFDKLRR--EWQMYKTFQTAVALHQPEHIFV-LGDLLDEGQYVG---------GEDFDNY 78 (293)
Q Consensus 11 ~~~ri~~iSD~H~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~pd~vi~-~GDl~~~~~~~~---------~~~~~~~ 78 (293)
..++|++++|+|..-.....+.++... ...-...+.+.+++..++.+++ +||++.+..... .......
T Consensus 40 ~~l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~~n~llld~GD~~qGs~l~~~~~~~~~~~~~~~~~~ 119 (1163)
T PRK09419 40 VNIQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKENPNTLLVDNGDLIQGNPLGEYAVKDNILFKNKTHPM 119 (1163)
T ss_pred eEEEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhCCCeEEEeCCCccCCChhhhHHhhhccccCCCcCHH
Confidence 359999999999753221100000000 0011223444445556766555 999999653110 0001122
Q ss_pred HHHHHhhhcCCCCceEEEecCCCCCCCC
Q psy2930 79 VRRFYSLFSTPDGTELHVVPGNHDMGFH 106 (293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~v~GNHD~~~~ 106 (293)
++.+.. + +.- ++++||||+.++
T Consensus 120 i~~mN~-l----gyD-a~~lGNHEFd~G 141 (1163)
T PRK09419 120 IKAMNA-L----GYD-AGTLGNHEFNYG 141 (1163)
T ss_pred HHHHhh-c----Ccc-EEeecccccccC
Confidence 332322 2 222 778999999764
No 95
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=98.13 E-value=6.8e-05 Score=72.38 Aligned_cols=91 Identities=12% Similarity=0.058 Sum_probs=45.9
Q ss_pred CCceEEEEEecCCcCCCCCCchhHHHHh--HHHHHHHHHHHHHhc-CCCEEEEcCccCCCCccCChhhH--------HHH
Q psy2930 10 INNIKAIFIADTHLLGPFRGHWFDKLRR--EWQMYKTFQTAVALH-QPEHIFVLGDLLDEGQYVGGEDF--------DNY 78 (293)
Q Consensus 10 ~~~~ri~~iSD~H~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~pd~vi~~GDl~~~~~~~~~~~~--------~~~ 78 (293)
...++|++.+|+|..-.....+.+.... ...-..++.+.+++. ..-+++..||++.+....+-... ...
T Consensus 23 ~~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~~p~ 102 (649)
T PRK09420 23 TVDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGSPLGDYMAAKGLKAGDVHPV 102 (649)
T ss_pred CceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCchhhhhhhhccccCCCcchH
Confidence 4579999999999854322111110000 001112233333433 34688999999996442110000 112
Q ss_pred HHHHHhhhcCCCCceEEEecCCCCCCCC
Q psy2930 79 VRRFYSLFSTPDGTELHVVPGNHDMGFH 106 (293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~v~GNHD~~~~ 106 (293)
++.+.. + +.- .+++||||+.++
T Consensus 103 i~amN~-l----gyD-a~tlGNHEFd~G 124 (649)
T PRK09420 103 YKAMNT-L----DYD-VGNLGNHEFNYG 124 (649)
T ss_pred HHHHHh-c----CCc-EEeccchhhhcC
Confidence 333332 2 221 889999999764
No 96
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.12 E-value=0.0002 Score=70.10 Aligned_cols=58 Identities=16% Similarity=0.075 Sum_probs=30.9
Q ss_pred CceEEEEEecCCcCCCCCCchhHHHHh--HHHHHHHHHHHHHhc-CCCEEEEcCccCCCCc
Q psy2930 11 NNIKAIFIADTHLLGPFRGHWFDKLRR--EWQMYKTFQTAVALH-QPEHIFVLGDLLDEGQ 68 (293)
Q Consensus 11 ~~~ri~~iSD~H~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~pd~vi~~GDl~~~~~ 68 (293)
-.++|++.+|+|..-.....+.+.... ...-...+++.+++. .--++|..||++.+..
T Consensus 38 ~~L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e~~ntlllD~GD~iqGsp 98 (780)
T PRK09418 38 VNLRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREEAKNSVLFDDGDALQGTP 98 (780)
T ss_pred eEEEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHhCCCeEEEECCCCCCCch
Confidence 469999999999864322111110000 000112233333333 3458999999998543
No 97
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=98.10 E-value=8.2e-06 Score=69.41 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=28.7
Q ss_pred CCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 54 PEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 54 pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
-|.++++||+++.|+.+ . +.++.+.++. . .-.++++.||||.
T Consensus 37 ~d~li~lGDliDRGp~S--~---~vl~~~~~~~--~-~~~~~~l~GNHE~ 78 (245)
T PRK13625 37 QRKLAFVGDLTDRGPHS--L---RMIEIVWELV--E-KKAAYYVPGNHCN 78 (245)
T ss_pred CCEEEEECcccCCCcCh--H---HHHHHHHHHh--h-CCCEEEEeCccHH
Confidence 47999999999988632 1 2233344443 1 2368999999985
No 98
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=98.03 E-value=1.1e-05 Score=66.87 Aligned_cols=65 Identities=22% Similarity=0.334 Sum_probs=40.0
Q ss_pred EEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHh-cCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 14 KAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL-HQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 14 ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
||+++||+|. .. .. + .++.+.+.. .++|.++++||+++.|... .+.++.+. . .
T Consensus 2 ri~~isDiHg-~~------~~------l-~~~l~~~~~~~~~d~~~~~GD~v~~g~~~-----~~~~~~l~-----~--~ 55 (207)
T cd07424 2 RDFVVGDIHG-HY------SL------L-QKALDAVGFDPARDRLISVGDLIDRGPES-----LACLELLL-----E--P 55 (207)
T ss_pred CEEEEECCCC-CH------HH------H-HHHHHHcCCCCCCCEEEEeCCcccCCCCH-----HHHHHHHh-----c--C
Confidence 7999999996 11 11 1 112222222 3689999999999987632 12222222 1 2
Q ss_pred eEEEecCCCCCC
Q psy2930 93 ELHVVPGNHDMG 104 (293)
Q Consensus 93 ~~~~v~GNHD~~ 104 (293)
++++|.||||..
T Consensus 56 ~~~~v~GNhe~~ 67 (207)
T cd07424 56 WFHAVRGNHEQM 67 (207)
T ss_pred CEEEeECCChHH
Confidence 579999999963
No 99
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.03 E-value=7.6e-05 Score=63.80 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=45.5
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
|||+++.|+ +|.+.. ..+.+.+.+..++.++|++|..||....|...+ ...++.+.+ .|+
T Consensus 1 m~ilfiGDi-~G~~Gr----------~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~----~~~~~~L~~-----~Gv 60 (266)
T TIGR00282 1 IKFLFIGDV-YGKAGR----------KIVKNNLPQLKSKYQADLVIANGENTTHGKGLT----LKIYEFLKQ-----SGV 60 (266)
T ss_pred CeEEEEEec-CCHHHH----------HHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCC----HHHHHHHHh-----cCC
Confidence 789999999 433321 123344445555678999999999997664333 222333433 466
Q ss_pred eEEEecCCCCCCCC
Q psy2930 93 ELHVVPGNHDMGFH 106 (293)
Q Consensus 93 ~~~~v~GNHD~~~~ 106 (293)
.++.+ |||.+...
T Consensus 61 DviT~-GNH~~Dkg 73 (266)
T TIGR00282 61 NYITM-GNHTWFQK 73 (266)
T ss_pred CEEEc-cchhccCc
Confidence 65555 99998653
No 100
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=98.03 E-value=1e-05 Score=68.98 Aligned_cols=42 Identities=31% Similarity=0.533 Sum_probs=29.5
Q ss_pred CCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCC
Q psy2930 53 QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMG 104 (293)
Q Consensus 53 ~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~ 104 (293)
+.|.++++||+++.|+.+ .+.++.+.++ +..+++|.||||..
T Consensus 26 ~~D~Li~lGDlVdRGp~s-----~evl~~l~~l-----~~~v~~VlGNHD~~ 67 (257)
T cd07422 26 AKDRLWLVGDLVNRGPDS-----LETLRFVKSL-----GDSAKTVLGNHDLH 67 (257)
T ss_pred CCCEEEEecCcCCCCcCH-----HHHHHHHHhc-----CCCeEEEcCCchHH
Confidence 579999999999988632 2223333332 23688999999973
No 101
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=97.99 E-value=6.1e-05 Score=58.82 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=22.9
Q ss_pred cCHHHHHHHHhhcCccEEEecCCCCCce
Q psy2930 225 ISKESTDMLLDYLNPRLVIDGHTHNGCH 252 (293)
Q Consensus 225 l~~~~~~~ll~~~~~~lvl~GH~H~~~~ 252 (293)
.......+++++.+|+++||||.|.+..
T Consensus 97 ~GS~~i~~l~~~lkPrYhf~gh~~~fye 124 (150)
T cd07380 97 CGSDLIAELAKKLKPRYHFAGLEGVFYE 124 (150)
T ss_pred CCCHHHHHHHHHcCCCeEeecCCCceEe
Confidence 3445778899999999999999997544
No 102
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=97.98 E-value=2.2e-05 Score=65.80 Aligned_cols=43 Identities=28% Similarity=0.516 Sum_probs=29.8
Q ss_pred CCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 53 QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 53 ~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
..|.+|++||+++.|+.+ .+.++.+.++. ..+ .++++.||||.
T Consensus 33 ~~d~lvflGD~IDRGp~S-----~~vl~~l~~l~--~~~-~~~~l~GNHE~ 75 (222)
T cd07413 33 PERQVVFLGDLIDRGPEI-----RELLEIVKSMV--DAG-HALAVMGNHEF 75 (222)
T ss_pred CCCEEEEeCcccCCCCCH-----HHHHHHHHHhh--cCC-CEEEEEccCcH
Confidence 368999999999988732 22344454443 122 68999999996
No 103
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=97.95 E-value=1.7e-05 Score=67.99 Aligned_cols=64 Identities=27% Similarity=0.456 Sum_probs=40.8
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHh----cCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcC
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL----HQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFST 88 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (293)
|++.+|||+|.- + +++.+.+++ .+.|.++++||+++.|+.+ .+.++.+.++
T Consensus 1 m~~YvIGDIHGc-------~----------daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~s-----levL~~l~~l--- 55 (279)
T TIGR00668 1 MATYLIGDLHGC-------Y----------DELQALLERVEFDPGQDTLWLTGDLVARGPGS-----LEVLRYVKSL--- 55 (279)
T ss_pred CcEEEEEcccCC-------H----------HHHHHHHHHhCcCCCCCEEEEeCCccCCCCCH-----HHHHHHHHhc---
Confidence 568899999981 1 122233333 3569999999999988732 1223333332
Q ss_pred CCCceEEEecCCCCC
Q psy2930 89 PDGTELHVVPGNHDM 103 (293)
Q Consensus 89 ~~~~~~~~v~GNHD~ 103 (293)
+..+++|.||||.
T Consensus 56 --~~~~~~VlGNHD~ 68 (279)
T TIGR00668 56 --GDAVRLVLGNHDL 68 (279)
T ss_pred --CCCeEEEEChhHH
Confidence 2246799999996
No 104
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=97.94 E-value=3.9e-05 Score=65.97 Aligned_cols=47 Identities=23% Similarity=0.315 Sum_probs=28.9
Q ss_pred CCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCC
Q psy2930 53 QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMG 104 (293)
Q Consensus 53 ~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~ 104 (293)
..+.+|++||+++.|.. ..+. ++.+...........+++++||||..
T Consensus 34 ~~~~iVfLGDyVDRGPd--S~eV---ld~L~~l~~~~~~~~vv~LrGNHE~~ 80 (304)
T cd07421 34 ASALVIFLGDYCDRGPE--TRKV---IDFLISLPEKHPKQRHVFLCGNHDFA 80 (304)
T ss_pred CCcEEEEeCCcCCCCCC--HHHH---HHHHHHhhhcccccceEEEecCChHH
Confidence 35789999999998863 2223 33333322101122578999999963
No 105
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.85 E-value=3.7e-05 Score=64.43 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=32.9
Q ss_pred HHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCC
Q psy2930 49 VALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMG 104 (293)
Q Consensus 49 ~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~ 104 (293)
+...++|.+|++||+++.|... ...++.+.++.. ...+++++.||||..
T Consensus 20 ~~~~~~d~li~lGD~vdrg~~~-----~~~l~~l~~~~~--~~~~~~~l~GNHe~~ 68 (225)
T cd00144 20 IGFPPNDKLIFLGDYVDRGPDS-----VEVIDLLLALKI--LPDNVILLRGNHEDM 68 (225)
T ss_pred hCCCCCCEEEEECCEeCCCCCc-----HHHHHHHHHhcC--CCCcEEEEccCchhh
Confidence 3335789999999999987632 233333443321 145799999999974
No 106
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=97.85 E-value=0.0015 Score=56.33 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=41.7
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
.++++++|+|..-. . +.+. .+.......+.++++||+++.|... .+.......+. + ..+-
T Consensus 28 ~~i~vvGDiHG~~~-------~------l~~l-l~~~~~~~~~~~vfLGD~VDrG~~s--~e~l~~l~~lk-~---~~p~ 87 (271)
T smart00156 28 APVTVCGDIHGQFD-------D------LLRL-FDLNGPPPDTNYVFLGDYVDRGPFS--IEVILLLFALK-I---LYPN 87 (271)
T ss_pred CCEEEEEeCcCCHH-------H------HHHH-HHHcCCCCCceEEEeCCccCCCCCh--HHHHHHHHHHH-h---cCCC
Confidence 47899999997111 0 1111 1222234668899999999988632 12222122221 1 1234
Q ss_pred eEEEecCCCCCC
Q psy2930 93 ELHVVPGNHDMG 104 (293)
Q Consensus 93 ~~~~v~GNHD~~ 104 (293)
.++.+.||||..
T Consensus 88 ~v~llrGNHE~~ 99 (271)
T smart00156 88 RVVLLRGNHESR 99 (271)
T ss_pred CEEEEeccccHH
Confidence 689999999983
No 107
>KOG3947|consensus
Probab=97.77 E-value=0.00065 Score=57.14 Aligned_cols=72 Identities=22% Similarity=0.299 Sum_probs=48.2
Q ss_pred CCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhc
Q psy2930 8 ESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFS 87 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~ 87 (293)
......|++.+||+|-...... +-..-|+++.+||.+..|. .++ ...+.+.++
T Consensus 57 ~~~~~~r~VcisdtH~~~~~i~--------------------~~p~gDvlihagdfT~~g~---~~e----v~~fn~~~g 109 (305)
T KOG3947|consen 57 VGPGYARFVCISDTHELTFDIN--------------------DIPDGDVLIHAGDFTNLGL---PEE----VIKFNEWLG 109 (305)
T ss_pred CCCCceEEEEecCcccccCccc--------------------cCCCCceEEeccCCccccC---HHH----HHhhhHHhc
Confidence 5556689999999998433221 1256799999999999775 222 344444443
Q ss_pred CCCCceEEEecCCCCCCCC
Q psy2930 88 TPDGTELHVVPGNHDMGFH 106 (293)
Q Consensus 88 ~~~~~~~~~v~GNHD~~~~ 106 (293)
.-...-.++|.|||+++++
T Consensus 110 slph~yKIVIaGNHELtFd 128 (305)
T KOG3947|consen 110 SLPHEYKIVIAGNHELTFD 128 (305)
T ss_pred cCcceeeEEEeeccceeec
Confidence 2223335899999999875
No 108
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=97.67 E-value=0.0063 Score=53.40 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=21.2
Q ss_pred cCHHHHHHHHhhcCccEEEecCCCC
Q psy2930 225 ISKESTDMLLDYLNPRLVIDGHTHN 249 (293)
Q Consensus 225 l~~~~~~~ll~~~~~~lvl~GH~H~ 249 (293)
.+.....+.|++.+.++++=||.=.
T Consensus 220 fG~~~~~~Fl~~n~l~~iiR~He~~ 244 (305)
T cd07416 220 YSYRAVCEFLQKNNLLSIIRAHEAQ 244 (305)
T ss_pred cCHHHHHHHHHHcCCeEEEEecccc
Confidence 3566889999999999999999844
No 109
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=97.64 E-value=0.0049 Score=54.31 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=21.8
Q ss_pred cCHHHHHHHHhhcCccEEEecCCCCC
Q psy2930 225 ISKESTDMLLDYLNPRLVIDGHTHNG 250 (293)
Q Consensus 225 l~~~~~~~ll~~~~~~lvl~GH~H~~ 250 (293)
.+.+...+.|++.+.++++-||.=..
T Consensus 231 fg~~~~~~Fl~~n~l~~iiR~He~~~ 256 (316)
T cd07417 231 FGPDVTKRFLEENNLEYIIRSHEVKD 256 (316)
T ss_pred eCHHHHHHHHHHcCCcEEEECCcccc
Confidence 35668889999999999999998543
No 110
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=97.52 E-value=0.011 Score=52.01 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=20.4
Q ss_pred cCHHHHHHHHhhcCccEEEecCC
Q psy2930 225 ISKESTDMLLDYLNPRLVIDGHT 247 (293)
Q Consensus 225 l~~~~~~~ll~~~~~~lvl~GH~ 247 (293)
.+.+...+.+++.+.++++=||.
T Consensus 240 fg~~~~~~Fl~~n~l~~iiRgHe 262 (311)
T cd07419 240 FGPDRVHRFLEENDLQMIIRAHE 262 (311)
T ss_pred ECHHHHHHHHHHCCCeEEEEech
Confidence 45678899999999999999998
No 111
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=97.51 E-value=0.00011 Score=61.04 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=57.0
Q ss_pred EEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHH-hcCCCEEEEcCccCCCCccCC--------hhhHHHHHHHHHhh
Q psy2930 15 AIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVA-LHQPEHIFVLGDLLDEGQYVG--------GEDFDNYVRRFYSL 85 (293)
Q Consensus 15 i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pd~vi~~GDl~~~~~~~~--------~~~~~~~~~~~~~~ 85 (293)
|+++||+|++..... ++ ..+.+...+. ..+|+.+|++|++++...... ..........+.+.
T Consensus 1 Iv~~Sg~~~~~~~~~--~~-------~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (209)
T PF04042_consen 1 IVFASGPFLDSDNLS--LE-------PLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSF 71 (209)
T ss_dssp EEEEES--CTTT-HH--HH-------HHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHH
T ss_pred CEEEecCccCCCHhH--HH-------HHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHH
Confidence 689999999644221 11 2222333333 667999999999999533110 01111122223322
Q ss_pred hc-CCCCceEEEecCCCCCCCC-CCCC----chhHHHHHH---HhCCCCcceEEeCCEEEEEE
Q psy2930 86 FS-TPDGTELHVVPGNHDMGFH-YRLH----PYLNDRFSR---AFNSSMVKLLSIKGSYFVLI 139 (293)
Q Consensus 86 ~~-~~~~~~~~~v~GNHD~~~~-~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~i~l 139 (293)
+. ....+++++|||+||.... .-.+ ........+ ..-.+++..+.++|..|++.
T Consensus 72 ~~~i~~~~~vvlvPg~~D~~~~~~lPq~pl~~~~~~~~~~~~~~~~~sNP~~~~i~~~~i~~~ 134 (209)
T PF04042_consen 72 LESILPSTQVVLVPGPNDPTSSPVLPQPPLHSKLFPKLKKYSNIHFVSNPCRISINGQEIGVT 134 (209)
T ss_dssp HCCCHCCSEEEEE--TTCTT-S-SCSB----TTTTCHHCTTTTEEE--CSEEEEETTEEEEE-
T ss_pred HhhcccccEEEEeCCCccccccCCCCCCCCCHHHHhhhhhcCceEEeCCCeEEEEeCCcEEEE
Confidence 22 1257899999999998643 1111 111122222 12223578899999999886
No 112
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=97.50 E-value=0.0064 Score=53.03 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=22.0
Q ss_pred cCHHHHHHHHhhcCccEEEecCCCCC
Q psy2930 225 ISKESTDMLLDYLNPRLVIDGHTHNG 250 (293)
Q Consensus 225 l~~~~~~~ll~~~~~~lvl~GH~H~~ 250 (293)
.++....+.+++.+.++++=||.=..
T Consensus 222 fg~~~~~~Fl~~n~l~~iiR~Hq~~~ 247 (294)
T PTZ00244 222 FGEDIVNDFLDMVDMDLIVRAHQVME 247 (294)
T ss_pred cCHHHHHHHHHHcCCcEEEEcCcccc
Confidence 35678899999999999999998553
No 113
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=97.48 E-value=0.0038 Score=54.47 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=22.0
Q ss_pred cCHHHHHHHHhhcCccEEEecCCCCC
Q psy2930 225 ISKESTDMLLDYLNPRLVIDGHTHNG 250 (293)
Q Consensus 225 l~~~~~~~ll~~~~~~lvl~GH~H~~ 250 (293)
.+.....+.|++.+.++++-||.=..
T Consensus 220 fg~~~~~~Fl~~n~l~~iiR~He~~~ 245 (293)
T cd07414 220 FGKDVVAKFLNKHDLDLICRAHQVVE 245 (293)
T ss_pred cCHHHHHHHHHHcCCeEEEECCcccc
Confidence 35678899999999999999998553
No 114
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=97.41 E-value=0.014 Score=50.63 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=21.8
Q ss_pred ccCHHHHHHHHhhcCccEEEecCCCC
Q psy2930 224 CISKESTDMLLDYLNPRLVIDGHTHN 249 (293)
Q Consensus 224 ~l~~~~~~~ll~~~~~~lvl~GH~H~ 249 (293)
..+.....+.|++.+.++++=||.=.
T Consensus 211 ~fg~~~~~~Fl~~n~l~~iiR~He~~ 236 (285)
T cd07415 211 LFGQDVVEEFNHNNGLTLICRAHQLV 236 (285)
T ss_pred ccCHHHHHHHHHHCCCeEEEEcCccc
Confidence 34567889999999999999999954
No 115
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=97.36 E-value=0.037 Score=49.76 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.0
Q ss_pred ccCHHHHHHHHhhcCccEEEecCC
Q psy2930 224 CISKESTDMLLDYLNPRLVIDGHT 247 (293)
Q Consensus 224 ~l~~~~~~~ll~~~~~~lvl~GH~ 247 (293)
..+.+...+.|++.+.++++=||.
T Consensus 270 ~FG~~~~~~FL~~n~l~~IIRsHe 293 (377)
T cd07418 270 LWGPDCTEEFLEKNNLKLIIRSHE 293 (377)
T ss_pred ccCHHHHHHHHHHcCCcEEEECCC
Confidence 345678899999999999999999
No 116
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=97.30 E-value=0.021 Score=50.32 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=22.4
Q ss_pred ccCHHHHHHHHhhcCccEEEecCCCCC
Q psy2930 224 CISKESTDMLLDYLNPRLVIDGHTHNG 250 (293)
Q Consensus 224 ~l~~~~~~~ll~~~~~~lvl~GH~H~~ 250 (293)
..++....+.|++.+.++++=||.=..
T Consensus 228 ~FG~~~~~~Fl~~n~l~~IiR~Hq~v~ 254 (320)
T PTZ00480 228 VFSQEIVQVFLKKHELDLICRAHQVVE 254 (320)
T ss_pred ccCHHHHHHHHHhCCCcEEEEcCcccc
Confidence 345678899999999999999998553
No 117
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=97.18 E-value=0.089 Score=46.43 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=21.7
Q ss_pred ccCHHHHHHHHhhcCccEEEecCCCC
Q psy2930 224 CISKESTDMLLDYLNPRLVIDGHTHN 249 (293)
Q Consensus 224 ~l~~~~~~~ll~~~~~~lvl~GH~H~ 249 (293)
..+++...+.|++.+.++++=||.=.
T Consensus 250 ~FG~~~~~~Fl~~n~l~~IIR~He~v 275 (321)
T cd07420 250 YFGPDVTSKVLQKHGLSLLIRSHECK 275 (321)
T ss_pred ccCHHHHHHHHHHCCCcEEEEcChhh
Confidence 34567889999999999999999843
No 118
>KOG2863|consensus
Probab=97.17 E-value=0.00043 Score=60.24 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=25.2
Q ss_pred ccCHHHHHHHHhhcCccEEEecCCCCCce
Q psy2930 224 CISKESTDMLLDYLNPRLVIDGHTHNGCH 252 (293)
Q Consensus 224 ~l~~~~~~~ll~~~~~~lvl~GH~H~~~~ 252 (293)
-|+...+.++|++.+|..+|+.|.|.-..
T Consensus 204 ~LGSp~~~eLL~~LkP~yWfsAHLH~KFa 232 (456)
T KOG2863|consen 204 KLGSPALEELLEDLKPQYWFSAHLHVKFA 232 (456)
T ss_pred CcCChHHHHHHHHhCcchhhhhhHhhHHh
Confidence 45666789999999999999999998765
No 119
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=97.10 E-value=0.0032 Score=53.28 Aligned_cols=212 Identities=17% Similarity=0.157 Sum_probs=102.4
Q ss_pred CEEEEcCccCCCCccCC--h---hhHHHHHHHHHhhhcC-CCCceEEEecCCCCCCCCCCCCc--hhHHHHHHHh----C
Q psy2930 55 EHIFVLGDLLDEGQYVG--G---EDFDNYVRRFYSLFST-PDGTELHVVPGNHDMGFHYRLHP--YLNDRFSRAF----N 122 (293)
Q Consensus 55 d~vi~~GDl~~~~~~~~--~---~~~~~~~~~~~~~~~~-~~~~~~~~v~GNHD~~~~~~~~~--~~~~~~~~~~----~ 122 (293)
=-++.-||+++.+.... + .++...-.++..-.+. .-..|||.-.||||+........ ..+...+.+. .
T Consensus 128 lGlV~ggDitddgggq~~qprEg~ql~qf~~RYsq~vG~~h~H~PvYvGlgnhdldq~gpph~~DWyRrElrdyve~~Hr 207 (392)
T COG5555 128 LGLVEGGDITDDGGGQSFQPREGNQLKQFELRYSQDVGNIHMHYPVYVGLGNHDLDQKGPPHSLDWYRRELRDYVENYHR 207 (392)
T ss_pred eeEEeecceeccCCCcccCccccchhhchHhhhccCCCCceeeeeeEeccCchhhcccCCCCchhHHHHHHHHHHHhhcC
Confidence 34788899999755211 1 2232222222221110 12579999999999964321110 1111122211 1
Q ss_pred C------C----------CcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhhhcccCCCCCccccCCCCCC
Q psy2930 123 S------S----------MVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQ 186 (293)
Q Consensus 123 ~------~----------~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 186 (293)
+ + ..|++.+++++.+-+.... |.... -...-+-|++..|...-. ...|
T Consensus 208 ~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf~--Gd~~~---ga~sslpwlk~dl~~~aa-----------dgrp 271 (392)
T COG5555 208 SDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRFI--GDAEP---GANSSLPWLKVDLIYSAA-----------DGRP 271 (392)
T ss_pred cCcccCCCCCcccccccchheeccccceeEEEEeeec--cccCC---CccccCcceeccceeecc-----------CCCc
Confidence 1 1 1356778888777764322 22111 112235577777765432 6789
Q ss_pred CEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCCCceeeccCCCeeEEecc
Q psy2930 187 PIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVP 266 (293)
Q Consensus 187 ~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~ 266 (293)
++++.|+---..+.....+ -.-.....+..-...|..-++..+...++-|++...|+||.|..-.....+ -.+
T Consensus 272 v~LfqhyGwdtfsteawdp-AsrT~Dd~Gsgaphww~a~er~all~~lqGYNvvg~fhGhkhd~~mayrr~------~ld 344 (392)
T COG5555 272 VYLFQHYGWDTFSTEAWDP-ASRTLDDTGSGAPHWWPAPERGALLFFLQGYNVVGTFHGHKHDFNMAYRRY------DLD 344 (392)
T ss_pred eeehhhhCccceeccccCc-hhcccccCCCCCCCCCCCCCcchHHHhhcCceeEEeccccccccceeeeec------Ccc
Confidence 9999998442111100000 000011111111111223344566777788899999999999986543222 222
Q ss_pred ceeccCCCCCceEEEEEecCCce
Q psy2930 267 SFSWRNKNNPSFLMGYVVENSSG 289 (293)
Q Consensus 267 s~~~~~~~~p~f~~~~~~~~~~~ 289 (293)
.+.....-..||.+..+....+.
T Consensus 345 ~fkpkaa~~Ggfav~rvt~~~mD 367 (392)
T COG5555 345 AFKPKAAVRGGFAVGRVTNPWMD 367 (392)
T ss_pred ccCccchhhcceeEEEecCchhh
Confidence 22222212235666665554443
No 120
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.013 Score=53.35 Aligned_cols=162 Identities=9% Similarity=0.092 Sum_probs=91.7
Q ss_pred CCceEEEecCCCCCCCCC----CC-Cc-hhH-----------HHHHHHhCC-----C----CcceEEeCC-EEEEEEece
Q psy2930 90 DGTELHVVPGNHDMGFHY----RL-HP-YLN-----------DRFSRAFNS-----S----MVKLLSIKG-SYFVLINSM 142 (293)
Q Consensus 90 ~~~~~~~v~GNHD~~~~~----~~-~~-~~~-----------~~~~~~~~~-----~----~~~~~~~~~-~~~i~lds~ 142 (293)
.-+|+++.-=.|+..... .. .+ +.. +.|-++++- + -|..+..+. ..|.+||+.
T Consensus 231 A~~Pwi~~WDDHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A~qAyyE~mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR 310 (522)
T COG3540 231 AAFPWIVQWDDHEVANNWSNSIDENDSRYDEKDFVLRAAAARQAYYEHMPIRYSSLPTDGRLYRSFTYGPLADLFVLDTR 310 (522)
T ss_pred ccCCEEEEeccccccccccccccccCCCCChHHHHHHHHHHHHHHHHhCccccccCCccceeeeeeccccccceeeeehh
Confidence 578999999999984321 11 11 111 223332221 0 145667776 478889998
Q ss_pred ecc------CCCCC---------CCchhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCC-C
Q psy2930 143 ALE------GDGCF---------LCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSG-P 206 (293)
Q Consensus 143 ~~~------~~~~~---------~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~-~ 206 (293)
.|- +.... ..-.++.|.+||+++|..+ +..+.||.+-.|+.....+...- .
T Consensus 311 ~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~S-------------katWnVia~q~~~~~~~~d~~~a~~ 377 (522)
T COG3540 311 SYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGLGAS-------------KATWNVIAQQMPLGLVVFDGSPATE 377 (522)
T ss_pred hhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhhhhc-------------chhhhhhhhhcceeEeecCCCcccc
Confidence 886 22211 1235689999999999986 45677777777774322111000 0
Q ss_pred CCchhhhhcccccccccccCHHHHHHHHhhcCcc--EEEecCCCCCcee-eccCC-------CeeEEecccee
Q psy2930 207 DSAPDIEKRKKFRQRWECISKESTDMLLDYLNPR--LVIDGHTHNGCHK-YHAYG-------KVHEYTVPSFS 269 (293)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~--lvl~GH~H~~~~~-~~~~~-------~~~~~~~~s~~ 269 (293)
+.....+. +++ -...++.+..+++..++. ++|+|-.|..... ...++ ...++++.|++
T Consensus 378 ~~~a~~D~----wdG-y~~~RerLl~fi~~~~~~N~V~LtgDvH~~wA~~l~~d~a~~~~~~~f~Efv~tsi~ 445 (522)
T COG3540 378 GQEANADG----WDG-YPAGRERLLRFIADRKIRNTVVLTGDVHYSWAHDLDPDFAQFEDFAPFWEFVSTSIN 445 (522)
T ss_pred CccccccC----cCC-CcccHHHHHHHHHhcCCCCcEEEechhHHHHHhhcCcchhcccccCceeeEeeccCc
Confidence 00000000 112 245667788888888766 8999999987542 11221 34566666654
No 121
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=96.57 E-value=0.039 Score=46.66 Aligned_cols=21 Identities=29% Similarity=0.083 Sum_probs=16.3
Q ss_pred HHhhcCccEEEecCCCCCcee
Q psy2930 233 LLDYLNPRLVIDGHTHNGCHK 253 (293)
Q Consensus 233 ll~~~~~~lvl~GH~H~~~~~ 253 (293)
.+...++++|+.||.|..+..
T Consensus 202 ~l~~~G~D~IiG~H~Hv~q~~ 222 (239)
T cd07381 202 ALIDAGADLVIGHHPHVLQGI 222 (239)
T ss_pred HHHHCCCCEEEcCCCCcCCCe
Confidence 333458999999999998753
No 122
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=96.53 E-value=0.055 Score=45.31 Aligned_cols=93 Identities=12% Similarity=0.192 Sum_probs=55.5
Q ss_pred HhcCCCEEEEcCccCCCCc-------------------cCChhhHHHHHHHH------HhhhcCCCCceEEEecCCCCCC
Q psy2930 50 ALHQPEHIFVLGDLLDEGQ-------------------YVGGEDFDNYVRRF------YSLFSTPDGTELHVVPGNHDMG 104 (293)
Q Consensus 50 ~~~~pd~vi~~GDl~~~~~-------------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~GNHD~~ 104 (293)
.+.+||++|++||.+..-. ....+.+...+... ++. ...+|++++.-+||+.
T Consensus 26 ~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~p~~~~~---~~~~p~~~iwDDHDi~ 102 (228)
T cd07389 26 SEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSDPDLQRL---LAQVPTIGIWDDHDIG 102 (228)
T ss_pred cccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCCHHHHHH---hhcCCEEEeccccccc
Confidence 4679999999999887432 12223333332222 222 2578999999999996
Q ss_pred CCCCCC--------------chhHHHHHHHhCCC-----------CcceEEeCCE-EEEEEeceecc
Q psy2930 105 FHYRLH--------------PYLNDRFSRAFNSS-----------MVKLLSIKGS-YFVLINSMALE 145 (293)
Q Consensus 105 ~~~~~~--------------~~~~~~~~~~~~~~-----------~~~~~~~~~~-~~i~lds~~~~ 145 (293)
.+.... ....+.|..+.+.. .++.+.++.. .|++||+..+-
T Consensus 103 ~n~~~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~~~~lD~R~~R 169 (228)
T cd07389 103 DNWGGDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVDLILLDTRTYR 169 (228)
T ss_pred cccccccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcceEEEEeccccc
Confidence 532211 01123343333322 2456777886 99999998755
No 123
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=96.51 E-value=0.054 Score=45.18 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=46.4
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
||++++.|+ +|.+... .+.+.+.....+.++|+||+-|-....|.-...+- ++.+.+ .|+
T Consensus 1 mriLfiGDv-vGk~Gr~----------~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~----y~~l~~-----~G~ 60 (266)
T COG1692 1 MRILFIGDV-VGKPGRK----------AVKEHLPQLKSKYKIDFVIVNGENAAGGFGITEKI----YKELLE-----AGA 60 (266)
T ss_pred CeEEEEecc-cCcchHH----------HHHHHhHHHHHhhcCcEEEEcCccccCCcCCCHHH----HHHHHH-----hCC
Confidence 799999999 5455332 23344555556789999999999998877555222 333333 344
Q ss_pred eEEEecCCCCC
Q psy2930 93 ELHVVPGNHDM 103 (293)
Q Consensus 93 ~~~~v~GNHD~ 103 (293)
. ++.+|||=.
T Consensus 61 d-viT~GNH~w 70 (266)
T COG1692 61 D-VITLGNHTW 70 (266)
T ss_pred C-EEecccccc
Confidence 4 788999943
No 124
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=96.42 E-value=0.051 Score=46.00 Aligned_cols=20 Identities=25% Similarity=0.076 Sum_probs=15.7
Q ss_pred HhhcCccEEEecCCCCCcee
Q psy2930 234 LDYLNPRLVIDGHTHNGCHK 253 (293)
Q Consensus 234 l~~~~~~lvl~GH~H~~~~~ 253 (293)
+.+.++++|+.||.|..+..
T Consensus 201 l~~~G~DvIiG~H~H~~~~~ 220 (239)
T smart00854 201 LIDAGADVVIGHHPHVLQPI 220 (239)
T ss_pred HHHcCCCEEEcCCCCcCCce
Confidence 33358999999999988653
No 125
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=96.27 E-value=0.013 Score=51.40 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=21.8
Q ss_pred cCHHHHHHHHhhcCccEEEecCCCCC
Q psy2930 225 ISKESTDMLLDYLNPRLVIDGHTHNG 250 (293)
Q Consensus 225 l~~~~~~~ll~~~~~~lvl~GH~H~~ 250 (293)
.+.....+.|++.+.++++=||.=..
T Consensus 213 fg~~~~~~Fl~~n~l~~iiR~He~~~ 238 (303)
T PTZ00239 213 FGAKVTKEFCRLNDLTLICRAHQLVM 238 (303)
T ss_pred cCHHHHHHHHHHCCCcEEEEcChhhc
Confidence 45668899999999999999998553
No 126
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=96.24 E-value=0.037 Score=47.66 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=55.5
Q ss_pred CCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHH-HHhcCCCEEEEcCccCCCCc---cCChhhHHHHHHHHH
Q psy2930 8 ESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTA-VALHQPEHIFVLGDLLDEGQ---YVGGEDFDNYVRRFY 83 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pd~vi~~GDl~~~~~---~~~~~~~~~~~~~~~ 83 (293)
.++...+|+++||+|++.+.. ++.++. +...+... -+...|-++|++|+.+...- ......+++.++++.
T Consensus 23 ~~~~~~~~VilSDV~LD~p~t---l~~L~k---vf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La 96 (291)
T PTZ00235 23 KNDKRHNWIIMHDVYLDSPYT---FEVLDK---MLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLS 96 (291)
T ss_pred cCCCceEEEEEEeeccCCHHH---HHHHHH---HHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHH
Confidence 456668999999999965532 222221 22222110 11234999999999988631 112234666677776
Q ss_pred hh-hc----CCCCceEEEecCCCCCCC
Q psy2930 84 SL-FS----TPDGTELHVVPGNHDMGF 105 (293)
Q Consensus 84 ~~-~~----~~~~~~~~~v~GNHD~~~ 105 (293)
.+ +. ......+++|||-+|-+.
T Consensus 97 ~llls~fp~L~~~s~fVFVPGpnDPw~ 123 (291)
T PTZ00235 97 VMLISKFKLILEHCYLIFIPGINDPCA 123 (291)
T ss_pred HHHHHhChHHHhcCeEEEECCCCCCCc
Confidence 52 31 124678999999999854
No 127
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=96.15 E-value=0.31 Score=41.48 Aligned_cols=147 Identities=15% Similarity=0.141 Sum_probs=75.0
Q ss_pred CCCceEEEecCCCCCCCCCCCCchhHHHHHH----HhCC-------CCcceEEeCCEEEEEEeceeccCCCCCC------
Q psy2930 89 PDGTELHVVPGNHDMGFHYRLHPYLNDRFSR----AFNS-------SMVKLLSIKGSYFVLINSMALEGDGCFL------ 151 (293)
Q Consensus 89 ~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~~i~lds~~~~~~~~~~------ 151 (293)
..++.++.+..||-+.++.+......+.+++ ++|. ..+.+++.+|+++-++............
T Consensus 73 ~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~ 152 (250)
T PF09587_consen 73 DAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPYVGAGRNLEEARRPAIIEVNGVKIAFLGYTDGENGYSSANGNRPY 152 (250)
T ss_pred HcCCCEEEecCCCCccccHHHHHHHHHHHHHCCCcEeECcCChHHhcCeEEEEECCEEEEEEEEEcCCCCCccccccccc
Confidence 3577888888899776543211122222221 2221 1246788899888887444322111000
Q ss_pred ----------CchhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhccccccc
Q psy2930 152 ----------CKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQR 221 (293)
Q Consensus 152 ----------~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (293)
.......++.+.+.++.+++ ..+.+|+++|--.-.... +.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~r~-----------~~D~vIv~~HwG~e~~~~----p~--------------- 202 (250)
T PF09587_consen 153 GFSYRPDKAGLNPNRPGIERIKEDIREARK-----------KADVVIVSLHWGIEYENY----PT--------------- 202 (250)
T ss_pred cccccccccccccccchHHHHHHHHHHHhc-----------CCCEEEEEeccCCCCCCC----CC---------------
Confidence 00112234555555555543 567889999964321111 00
Q ss_pred ccccCHHHHHHHHhhcCccEEEecCCCCCceeeccCCCeeEEeccce
Q psy2930 222 WECISKESTDMLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSF 268 (293)
Q Consensus 222 ~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~ 268 (293)
.-.++....++ +.++++|+.+|.|..+..-...++.-.|..+.|
T Consensus 203 --~~q~~~a~~li-daGaDiIiG~HpHv~q~~E~y~~~~I~YSLGNf 246 (250)
T PF09587_consen 203 --PEQRELARALI-DAGADIIIGHHPHVIQPVEIYKGKPIFYSLGNF 246 (250)
T ss_pred --HHHHHHHHHHH-HcCCCEEEeCCCCcccceEEECCEEEEEeCccc
Confidence 00112333333 358999999999999864211223444444443
No 128
>KOG3325|consensus
Probab=96.01 E-value=0.026 Score=43.20 Aligned_cols=59 Identities=20% Similarity=0.125 Sum_probs=41.6
Q ss_pred HHHHHHhhcCccEEEecCCCCCceeeccCCCeeEEeccceeccC----C--CCCceEEEEEecCCce
Q psy2930 229 STDMLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRN----K--NNPSFLMGYVVENSSG 289 (293)
Q Consensus 229 ~~~~ll~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~----~--~~p~f~~~~~~~~~~~ 289 (293)
.+..+.++..++..++||+|....+-+. |.-.++-+|.+... . ..|+|.+++++.....
T Consensus 98 sL~~LaRqldvDILl~G~Th~f~Aye~e--g~ffvnPGSaTGAfn~~~t~~~~PSFvLmDiqg~~~v 162 (183)
T KOG3325|consen 98 SLALLARQLDVDILLTGHTHKFEAYEHE--GKFFVNPGSATGAFNVSDTDIIVPSFVLMDIQGSTVV 162 (183)
T ss_pred HHHHHHHhcCCcEEEeCCceeEEEEEeC--CcEEeCCCcccCCCcccccCCCCCceEEEEecCCEEE
Confidence 5555666669999999999999876543 34455555544332 1 4799999999987643
No 129
>KOG4419|consensus
Probab=95.71 E-value=0.21 Score=46.88 Aligned_cols=93 Identities=14% Similarity=0.086 Sum_probs=47.4
Q ss_pred CCCCceEEEEEecCCcCCCCC---CchhHHHHhHHHHHHHHHHHHHhcCCCE-EEEcCccCCCCccCC-hhhHHHHHHHH
Q psy2930 8 ESINNIKAIFIADTHLLGPFR---GHWFDKLRREWQMYKTFQTAVALHQPEH-IFVLGDLLDEGQYVG-GEDFDNYVRRF 82 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pd~-vi~~GDl~~~~~~~~-~~~~~~~~~~~ 82 (293)
......++.+.||+|.....- ..+-..++.-..+...+.+.++...+|. ++-+||+-++..+.+ -+........+
T Consensus 38 ~~~~~~nf~hTtdthG~~~~h~~~~~~~~~~G~f~~f~~~~k~~a~~~~~dvl~~dtGD~hdGtg~sd~~~~~g~~t~~l 117 (602)
T KOG4419|consen 38 LNWGQPNFIHTTDTHGWLGSHLRDARYDADFGDFAAFALRMKELADRKGVDVLLVDTGDLHDGTGLSDATDPPGIYTNFL 117 (602)
T ss_pred cccccccceeeccccccccccccchhhhhhhhhHHHHHHHHHHHHhccCCCEEEEecccccCCceeeeccCCchHHHHHH
Confidence 344557899999999875521 1111111111123333333344455655 667999888533221 01111223344
Q ss_pred HhhhcCCCCceEEEecCCCCCCC
Q psy2930 83 YSLFSTPDGTELHVVPGNHDMGF 105 (293)
Q Consensus 83 ~~~~~~~~~~~~~~v~GNHD~~~ 105 (293)
.+++ +- =+++.|||+++.
T Consensus 118 ~~~~--~y---D~l~lGNHEl~~ 135 (602)
T KOG4419|consen 118 FKMM--PY---DILTLGNHELYQ 135 (602)
T ss_pred HhcC--cc---chhhhcchhhhh
Confidence 5554 11 267899999975
No 130
>KOG3818|consensus
Probab=92.89 E-value=2 Score=39.09 Aligned_cols=122 Identities=11% Similarity=0.173 Sum_probs=70.4
Q ss_pred CCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCcc-CChhhHHHHHHHHHhhh
Q psy2930 8 ESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQY-VGGEDFDNYVRRFYSLF 86 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~-~~~~~~~~~~~~~~~~~ 86 (293)
+..+.-.|+++||+|++.... +. ..+.+.+..+...|-++|+.|-....... .+-.++.+.++.++..+
T Consensus 278 ~~~~d~~fVfLSdV~LD~~~v---m~-------aL~kifqgy~~~pP~~iIlcG~FtS~p~~~~s~~~~k~~f~~LA~~l 347 (525)
T KOG3818|consen 278 AENTDTSFVFLSDVFLDDKKV---ME-------ALRKIFQGYKDAPPTAIILCGSFTSSPRQTSSSDQLKDGFRWLAAQL 347 (525)
T ss_pred HhCcCceEEEEehhccccHHH---HH-------HHHHHHhhccCCCCeEEEEeccccccccccchHHHHHHHHHHHHhhc
Confidence 344556899999999943321 11 11223333344688999999999886442 23455666677776664
Q ss_pred cC----CCCceEEEecCCCCCCCCCC-CCchhHHHHHHHhCCC-CcceEEeCCEEEEEE
Q psy2930 87 ST----PDGTELHVVPGNHDMGFHYR-LHPYLNDRFSRAFNSS-MVKLLSIKGSYFVLI 139 (293)
Q Consensus 87 ~~----~~~~~~~~v~GNHD~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~l 139 (293)
.- ..+..+++|||-.|-+.+.- .++.....|-+.+... .+.+|..+-.|+...
T Consensus 348 ~~~~~~~ekT~fIFVPGP~Dp~~~~iLPr~piP~~~~~~i~kv~~~tvfasNPcRIqy~ 406 (525)
T KOG3818|consen 348 TCFRKDYEKTQFIFVPGPNDPWVDNILPRPPIPSLFTKHISKVCKNTVFASNPCRIQYC 406 (525)
T ss_pred cccccccccceEEEecCCCCCCcCccCCCCCchHHHHHHHHhhcCCceeccCCeeeEee
Confidence 21 24578999999999876431 1111223333322221 145666666666654
No 131
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=90.97 E-value=6.6 Score=33.34 Aligned_cols=87 Identities=13% Similarity=0.177 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCCCCCCCCchhHHHHHH-
Q psy2930 41 MYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSR- 119 (293)
Q Consensus 41 ~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~- 119 (293)
+.+.+.+..++.++|+||..|.....|.-.+.+. ++.+.+ .|+. .+..|||=.... ...+.+.+
T Consensus 15 v~~~Lp~L~~~~~~DfVIaNgENaa~G~Git~~~----~~~L~~-----~GvD-viT~GNH~wdkk-----ei~~~i~~~ 79 (253)
T PF13277_consen 15 VKEHLPELKEEYGIDFVIANGENAAGGFGITPKI----AEELFK-----AGVD-VITMGNHIWDKK-----EIFDFIDKE 79 (253)
T ss_dssp HHHHHHHHGG--G-SEEEEE-TTTTTTSS--HHH----HHHHHH-----HT-S-EEE--TTTTSST-----THHHHHHH-
T ss_pred HHHHHHHHHhhcCCCEEEECCcccCCCCCCCHHH----HHHHHh-----cCCC-EEecCcccccCc-----HHHHHHhcC
Confidence 4445555556779999999999998887555333 233333 2444 678999954321 11111111
Q ss_pred --H-----hCC----CCcceEEeCCEEEEEEece
Q psy2930 120 --A-----FNS----SMVKLLSIKGSYFVLINSM 142 (293)
Q Consensus 120 --~-----~~~----~~~~~~~~~~~~~i~lds~ 142 (293)
. +++ ..+.++..++.++.++|-+
T Consensus 80 ~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~ 113 (253)
T PF13277_consen 80 PRILRPANYPPGTPGRGYRIFEKNGKKVAVINLM 113 (253)
T ss_dssp SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE
T ss_pred CCcEECCCCCCCCCcCcEEEEEECCEEEEEEECc
Confidence 1 111 1256788899988888543
No 132
>PHA03008 hypothetical protein; Provisional
Probab=89.80 E-value=2.8 Score=33.88 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=28.5
Q ss_pred CCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCCC
Q psy2930 186 QPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNG 250 (293)
Q Consensus 186 ~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~ 250 (293)
.-||++|.||+..... .++...+.+-+.+.+|++.+.||.-+.
T Consensus 162 tDILITHgPP~GhLD~----------------------~vGC~~Ll~~I~rVKPKyHVFGh~~~~ 204 (234)
T PHA03008 162 CDILITASPPFAILDD----------------------DLACGDLFSKVIKIKPKFHIFNGLTQF 204 (234)
T ss_pred CCEEEeCCCCcccccc----------------------ccCcHHHHHHHHHhCCcEEEeCCcccc
Confidence 6699999999765421 112223444455778999999995444
No 133
>KOG2476|consensus
Probab=89.61 E-value=14 Score=34.14 Aligned_cols=190 Identities=11% Similarity=0.054 Sum_probs=92.1
Q ss_pred ceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhc-CCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCC
Q psy2930 12 NIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALH-QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPD 90 (293)
Q Consensus 12 ~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (293)
..||+++.|.-. .+. .+.+.+.++-++. ..|++|+.|+++.... ...+|..+..... .-
T Consensus 5 ~~kILv~Gd~~G------r~~-------eli~rI~~v~Kk~GpFd~liCvGnfF~~~~--~~~e~~~ykng~~-----~v 64 (528)
T KOG2476|consen 5 DAKILVCGDVEG------RFD-------ELIKRIQKVNKKSGPFDLLICVGNFFGHDT--QNAEVEKYKNGTK-----KV 64 (528)
T ss_pred CceEEEEcCccc------cHH-------HHHHHHHHHhhcCCCceEEEEecccCCCcc--chhHHHHHhcCCc-----cC
Confidence 368899888733 211 2334445554555 4799999999998622 3344444322222 34
Q ss_pred CceEEEecCCCCCCCCCCCCchhHHH--HHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhhh
Q psy2930 91 GTELHVVPGNHDMGFHYRLHPYLNDR--FSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKC 168 (293)
Q Consensus 91 ~~~~~~v~GNHD~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~~ 168 (293)
.+|+|+.-+|--....+-......+- --.+.+.- ...-...|+.+.-|.+..-... ......+...+.+...+..
T Consensus 65 PiptY~~g~~~~~~~ky~~n~~g~Ei~~Nlt~Lg~~-G~~~l~sGl~IaYLsG~e~~~~--~~~~fs~~dv~~l~~~~~~ 141 (528)
T KOG2476|consen 65 PIPTYFLGDNANETEKYFENSDGKEIAENLTYLGRK-GTYKLASGLTIAYLSGPESSEK--GESKFSQADVDELRHRLDT 141 (528)
T ss_pred ceeEEEecCCCCccceecccCCCcccccceeeeccc-ceEeecCCcEEEEeeccccccc--cccccCHHHHHHHhccccc
Confidence 67889888887421110000000000 00011111 1222334677766633221111 2223455566666655554
Q ss_pred cccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCC
Q psy2930 169 CRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTH 248 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H 248 (293)
++. ....-|+++-.=+...+.. +...+.++ ..-+.....++.....+++.|+|=.-
T Consensus 142 ~~~-----------~~gvDILlTseWP~~v~e~------~ss~~~~~-------~~~gs~lvs~La~~lkPRYHFa~~~~ 197 (528)
T KOG2476|consen 142 QKE-----------FKGVDILLTSEWPADVQER------NSSLPESK-------RLCGSELVSELAAELKPRYHFAGSDG 197 (528)
T ss_pred ccc-----------cCCccEEEecCCcchhhhc------cccCcccc-------CCcchHHHHHHHHhcCcceEeccCCC
Confidence 433 4455677765443322210 00000010 12223466778888899998888663
No 134
>KOG2732|consensus
Probab=86.36 E-value=26 Score=31.88 Aligned_cols=200 Identities=16% Similarity=0.124 Sum_probs=104.4
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHH----------hcCCCEEEEcCccCCCCccC------------
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVA----------LHQPEHIFVLGDLLDEGQYV------------ 70 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~pd~vi~~GDl~~~~~~~------------ 70 (293)
-+|+++|=+-++...... .++ +.+.+++. ....+-++++|.++......
T Consensus 176 ~~i~lVSGL~l~~~~~~~--~~l-------~~l~D~l~g~lg~e~~~~~~~i~rliv~Gn~l~~~~~~~~~~~~~~~~~~ 246 (435)
T KOG2732|consen 176 RKIALVSGLDLGGGSKNL--LRL-------ELLVDWLRGQLGNEYEQSASSIGRLIVAGNSLSFSIKILDSQSTSISRLT 246 (435)
T ss_pred CEEEEEeccccCCCcchh--HHH-------HHHHHHHhcccCccccccccccceEEEeccccchhhhccccceeeeeecc
Confidence 379999999887665321 111 11222222 12457799999998842210
Q ss_pred ------ChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCCC-CCCCCchhHHHHH-------HHhCCCCcceEEeCCEEE
Q psy2930 71 ------GGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGF-HYRLHPYLNDRFS-------RAFNSSMVKLLSIKGSYF 136 (293)
Q Consensus 71 ------~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 136 (293)
......++...+.++ ...+++=+.||=.|-.. ....++.....|. ..-...++|.+.++++++
T Consensus 247 ~~~~~~~~~~v~~ld~~L~~~---~~s~~VdimPG~~Dp~~~~lPqqPlh~~lfp~s~~~~~~~q~vTNPy~~~ld~~~v 323 (435)
T KOG2732|consen 247 KKDSAASVIPVKELDNFLAQI---PASISVDIMPGVNDPSNFMLPQQPLHRCLFPKSPQSLSTLQLVTNPYEFSLDGARV 323 (435)
T ss_pred ccccccccccHHHHHHHHHhc---cccCCccCCCCCCChhhccCCcCCcchhhhccCccccchhhcccCceEEEEcCEEE
Confidence 111223322233333 46788999999998632 1122222222222 222233579999999999
Q ss_pred EEEeceeccCCCCCCCchhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcc
Q psy2930 137 VLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRK 216 (293)
Q Consensus 137 i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~ 216 (293)
+.. .|.+.. ++. ...-.+..|+.. ..++-..|+.|.....-.|.+. .+++
T Consensus 324 l~t-----SGqNvs--Dl~--ry~~~~s~ld~l---------------e~tlkw~HvaPTaPDTL~cyPf-----tekD- 373 (435)
T KOG2732|consen 324 LGT-----SGQNVS--DLL--RYSSKKSGLDAL---------------ENTLKWGHVAPTAPDTLWCYPF-----TEKD- 373 (435)
T ss_pred Eec-----CCccHH--HHh--hhcchhhHHHHH---------------hhhheeccccCCCCCccccccc-----ccCC-
Confidence 987 332211 000 000112223222 2455667887754433334331 1221
Q ss_pred cccccccccCHHHHHHHHhhcCccEEEecCCCCCceeeccCC--CeeEEecccee
Q psy2930 217 KFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKYHAYG--KVHEYTVPSFS 269 (293)
Q Consensus 217 ~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~~~~~--~~~~~~~~s~~ 269 (293)
..+-. ..+.++++|-.=.........+ .+..+++|.||
T Consensus 374 ------PFv~~---------~~Phvy~~GNqp~f~~r~i~~~g~~~~Lv~VP~Fs 413 (435)
T KOG2732|consen 374 ------PFVMD---------ECPHVYIVGNQPKFGTRLIEGGGKNTLLVCVPKFS 413 (435)
T ss_pred ------Ceeec---------CCCeEEEecCCCcccceeeecCCceEEEEEccccc
Confidence 11111 1589999999877765543333 68999999987
No 135
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=85.83 E-value=0.8 Score=43.54 Aligned_cols=58 Identities=19% Similarity=0.402 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCCC
Q psy2930 37 REWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGF 105 (293)
Q Consensus 37 ~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~~ 105 (293)
+...+..++...++++-.|-+=+.|||+|-|+.. + .+.+.++..- -|=+--||||+-|
T Consensus 168 ~a~~fI~al~~lIqrL~VDhLHIvGDIyDRGp~p--d---~ImD~Lm~~h------svDIQWGNHDIlW 225 (640)
T PF06874_consen 168 RADEFIIALSELIQRLAVDHLHIVGDIYDRGPRP--D---KIMDRLMNYH------SVDIQWGNHDILW 225 (640)
T ss_pred cHHHHHHHHHHHHHHHhhhheeecccccCCCCCh--h---HHHHHHhcCC------CccccccchHHHH
Confidence 3456888899999999999999999999988732 2 3344444432 2456679999854
No 136
>KOG0374|consensus
Probab=82.49 E-value=2.3 Score=37.80 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=35.7
Q ss_pred cCHHHHHHHHhhcCccEEEecCCCCCceeeccCC--CeeEEeccceeccCCCCCceEEEEEecC
Q psy2930 225 ISKESTDMLLDYLNPRLVIDGHTHNGCHKYHAYG--KVHEYTVPSFSWRNKNNPSFLMGYVVEN 286 (293)
Q Consensus 225 l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~~~~~--~~~~~~~~s~~~~~~~~p~f~~~~~~~~ 286 (293)
-++....+.+++.+.++++-||.=....+-.-.+ -++.+.+|.-|-...+ ...++.++++
T Consensus 231 fg~~~v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP~Ycg~~~n--~gavm~Vd~~ 292 (331)
T KOG0374|consen 231 FGPAVVEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAPNYCGEFDN--AGAVMRVDKN 292 (331)
T ss_pred ecHHHHHHHHHHhCcceEEEcCccccccceEecCceEEEEecCchhccccCC--ceEEEEECCC
Confidence 3456788899999999999999644433211111 3566666655544322 2455555543
No 137
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=80.25 E-value=2.7 Score=38.55 Aligned_cols=59 Identities=19% Similarity=0.393 Sum_probs=42.4
Q ss_pred HhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCCC
Q psy2930 36 RREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGF 105 (293)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~~ 105 (293)
++...+.-++...++++-.|.+=+.|||.+.|+... .+.+++...- .+=+--||||+-|
T Consensus 173 ~~a~e~I~ala~~iqrLvVDhLHiVGDIyDRGP~pd-----~Imd~L~~yh------svDiQWGNHDilW 231 (648)
T COG3855 173 DRAKEFIIALAYLIQRLVVDHLHIVGDIYDRGPYPD-----KIMDTLINYH------SVDIQWGNHDILW 231 (648)
T ss_pred chHHHHHHHHHHHHHHHhhhheeeecccccCCCCch-----HHHHHHhhcc------cccccccCcceEE
Confidence 444567788888899999999999999999988432 3344555433 2334569999854
No 138
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=78.25 E-value=8.6 Score=32.62 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=44.1
Q ss_pred CCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCC-CCccCChhhHHHHHHHHHhhhc
Q psy2930 9 SINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLD-EGQYVGGEDFDNYVRRFYSLFS 87 (293)
Q Consensus 9 ~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (293)
.++..+|++.||++...... ..+++...+|+.+|+.|=.+. .|....+.......+.++.+..
T Consensus 173 ~dg~~~i~faSDvqGp~~~~----------------~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~ 236 (304)
T COG2248 173 TDGKSSIVFASDVQGPINDE----------------ALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIE 236 (304)
T ss_pred ecCCeEEEEcccccCCCccH----------------HHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHH
Confidence 45678999999998622211 234455579999999999884 3444455667777888888874
No 139
>KOG0372|consensus
Probab=78.03 E-value=7.1 Score=32.94 Aligned_cols=44 Identities=25% Similarity=0.425 Sum_probs=25.9
Q ss_pred CEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCC
Q psy2930 55 EHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMG 104 (293)
Q Consensus 55 d~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~ 104 (293)
.--+++||.|+.|..+- +.+.- .-. .+. .-+..+..+.|||+..
T Consensus 71 t~YLFLGDyVDRG~~Sv-Et~lL-Ll~-lK~---rYP~ritLiRGNHEsR 114 (303)
T KOG0372|consen 71 TNYLFLGDYVDRGYYSV-ETFLL-LLA-LKV---RYPDRITLIRGNHESR 114 (303)
T ss_pred CceEeecchhccccchH-HHHHH-HHH-Hhh---cCcceeEEeeccchhh
Confidence 44688999999876331 11111 111 121 2344689999999964
No 140
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=74.77 E-value=6.5 Score=35.26 Aligned_cols=46 Identities=11% Similarity=0.241 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecC
Q psy2930 40 QMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPG 99 (293)
Q Consensus 40 ~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G 99 (293)
.+...+.+.+.+.+||+||+.||-.. ....++.... .++|+..+-|
T Consensus 54 ~~~~~~~~~~~~~~Pd~Vlv~GD~~~-----------~la~alaA~~---~~ipv~Hiea 99 (346)
T PF02350_consen 54 LAIIELADVLEREKPDAVLVLGDRNE-----------ALAAALAAFY---LNIPVAHIEA 99 (346)
T ss_dssp HHHHHHHHHHHHHT-SEEEEETTSHH-----------HHHHHHHHHH---TT-EEEEES-
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCch-----------HHHHHHHHHH---hCCCEEEecC
Confidence 36677888888899999999999765 2233344433 5789876654
No 141
>KOG0376|consensus
Probab=68.59 E-value=52 Score=30.64 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=36.2
Q ss_pred HHHHHHHHhhcCccEEEecCCCCCceee--ccCCCeeEEeccceeccCCCCCceEEEEEecCCcee
Q psy2930 227 KESTDMLLDYLNPRLVIDGHTHNGCHKY--HAYGKVHEYTVPSFSWRNKNNPSFLMGYVVENSSGV 290 (293)
Q Consensus 227 ~~~~~~ll~~~~~~lvl~GH~H~~~~~~--~~~~~~~~~~~~s~~~~~~~~p~f~~~~~~~~~~~~ 290 (293)
+......+..-+.+.++-+|.=...-+. |....+.++..|..|-+.++. +..+.++++.++.
T Consensus 387 ~d~t~~f~~~n~l~~i~rshe~~d~gy~~eh~g~l~tvfsapnycd~~~n~--ga~i~~~~~~~~p 450 (476)
T KOG0376|consen 387 PDVTERFLQDNNLDKIIRSHEVKDEGYEVEHSGKLITVFSAPNYCDQMGNK--GAFIHLEPDDLTP 450 (476)
T ss_pred CCchhhHHhhcchHHHhhccccCCCceeeecCCcEEEEecCcchhhhcCCc--ceEEEecCCCCcc
Confidence 3455666677778888888865554321 322246666777777666654 4445555554443
No 142
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=66.66 E-value=6.4 Score=32.30 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=21.4
Q ss_pred CccEEEecCCCCCceeeccCCCeeEEeccce
Q psy2930 238 NPRLVIDGHTHNGCHKYHAYGKVHEYTVPSF 268 (293)
Q Consensus 238 ~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~ 268 (293)
+.+++++||+|...... .++...+.++|+
T Consensus 168 ~~~~iV~GHTh~~~~~~--~~~~i~ID~Gsv 196 (207)
T cd07424 168 GVDAVVHGHTPVKRPLR--LGNVLYIDTGAV 196 (207)
T ss_pred CCCEEEECCCCCCcceE--ECCEEEEECCCC
Confidence 46899999999987543 235677777775
No 143
>KOG0373|consensus
Probab=60.97 E-value=26 Score=29.09 Aligned_cols=43 Identities=26% Similarity=0.459 Sum_probs=25.6
Q ss_pred EEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCC
Q psy2930 56 HIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMG 104 (293)
Q Consensus 56 ~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~ 104 (293)
--|++||.++.|..+ -+.+.. +.-+. ..-+.++-.+.|||+..
T Consensus 75 nYiFmGDfVDRGyyS-LEtfT~----l~~Lk-aryP~~ITLlRGNHEsR 117 (306)
T KOG0373|consen 75 NYIFMGDFVDRGYYS-LETFTL----LLLLK-ARYPAKITLLRGNHESR 117 (306)
T ss_pred ceEEecccccccccc-HHHHHH----HHHHh-hcCCceeEEeeccchhh
Confidence 367899999987632 222222 21111 12345688999999863
No 144
>KOG3325|consensus
Probab=54.72 E-value=49 Score=25.74 Aligned_cols=106 Identities=16% Similarity=0.283 Sum_probs=57.6
Q ss_pred EEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCce
Q psy2930 14 KAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTE 93 (293)
Q Consensus 14 ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (293)
=++.++|+|+-... .+... .|.+.+---+..-|+++|.+... +.++-++.+. -.
T Consensus 2 LvL~lgD~HiP~Ra-~~Lp~----------KFkklLvPgki~hilctGNlcs~----------e~~dylk~l~-----~d 55 (183)
T KOG3325|consen 2 LVLVLGDLHIPHRA-NDLPA----------KFKKLLVPGKIQHILCTGNLCSK----------ESYDYLKTLS-----SD 55 (183)
T ss_pred EEEEeccccCCccc-cccCH----------HHHhccCCCceeEEEEeCCcchH----------HHHHHHHhhC-----CC
Confidence 47899999994432 22222 23333323477899999997752 2244444443 14
Q ss_pred EEEecCCCCCCCCCCCCchhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhh
Q psy2930 94 LHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLK 167 (293)
Q Consensus 94 ~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~ 167 (293)
+.+|.|.-|..-. ++ .+.+...+.+++=..+ |.-.-+ ..+++.|.-|.++|.
T Consensus 56 vhiVrGeFD~~~~--------------yP--~~kvvtvGqfkIG~ch-----GhqViP-~gd~~sL~~LaRqld 107 (183)
T KOG3325|consen 56 VHIVRGEFDENLK--------------YP--ENKVVTVGQFKIGLCH-----GHQVIP-WGDPESLALLARQLD 107 (183)
T ss_pred cEEEecccCcccc--------------CC--ccceEEeccEEEEeec-----CcEeec-CCCHHHHHHHHHhcC
Confidence 6889997776411 11 1466777766654432 211111 123455666666654
No 145
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=52.02 E-value=62 Score=29.15 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEE-EecCCCCC
Q psy2930 41 MYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELH-VVPGNHDM 103 (293)
Q Consensus 41 ~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~GNHD~ 103 (293)
+...+.+.+.+.+||+|++.||-... + ...+.... .++|++ +--|++-.
T Consensus 81 ~~~~~~~~~~~~~Pd~vlv~GD~~~~--------l---a~alaA~~---~~IPv~HveaG~rs~ 130 (365)
T TIGR03568 81 TIIGFSDAFERLKPDLVVVLGDRFEM--------L---AAAIAAAL---LNIPIAHIHGGEVTE 130 (365)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCchHH--------H---HHHHHHHH---hCCcEEEEECCccCC
Confidence 55677888888999999999997651 1 12222222 578987 56666743
No 146
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=50.65 E-value=94 Score=24.02 Aligned_cols=29 Identities=7% Similarity=-0.025 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCccCCCCc
Q psy2930 40 QMYKTFQTAVALHQPEHIFVLGDLLDEGQ 68 (293)
Q Consensus 40 ~~~~~~~~~~~~~~pd~vi~~GDl~~~~~ 68 (293)
.+.+++.+..+..+.|+||.+|-..-...
T Consensus 48 ~i~~~l~~~~~~~~~DlVittGG~s~g~~ 76 (152)
T cd00886 48 EIREALIEWADEDGVDLILTTGGTGLAPR 76 (152)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcCCCCC
Confidence 35555555544347999999999776544
No 147
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=49.12 E-value=46 Score=30.22 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCccCC
Q psy2930 40 QMYKTFQTAVALHQPEHIFVLGDLLD 65 (293)
Q Consensus 40 ~~~~~~~~~~~~~~pd~vi~~GDl~~ 65 (293)
.+...+.+.+.+.+||.|++-||-..
T Consensus 79 ~~i~~~~~vl~~~kPD~VlVhGDT~t 104 (383)
T COG0381 79 NIIEGLSKVLEEEKPDLVLVHGDTNT 104 (383)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcch
Confidence 46677888888999999999999775
No 148
>KOG0371|consensus
Probab=48.57 E-value=19 Score=30.73 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=27.4
Q ss_pred cCCCE-EEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 52 HQPEH-IFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 52 ~~pd~-vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
..||. -+++||-++.|..+. +-..+.-+++ + .-.-.|-++.|||+.
T Consensus 84 ~~pdtnylfmGDyvdrGy~Sv--etVS~lva~K--v--ry~~rvtilrGNHEs 130 (319)
T KOG0371|consen 84 LAPDTNYLFMGDYVDRGYYSV--ETVSLLVALK--V--RYPDRVTILRGNHES 130 (319)
T ss_pred CCCCcceeeeeeecccccchH--HHHHHHHHhh--c--cccceeEEecCchHH
Confidence 45554 678999999886321 1222222221 1 223468999999996
No 149
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=46.60 E-value=65 Score=27.92 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEcCc
Q psy2930 38 EWQMYKTFQTAVALHQPEHIFVLGD 62 (293)
Q Consensus 38 ~~~~~~~~~~~~~~~~pd~vi~~GD 62 (293)
+..+-+.+.+.+...+||.|++||=
T Consensus 139 E~eqp~~i~~Ll~~~~PDIlViTGH 163 (287)
T PF05582_consen 139 EKEQPEKIYRLLEEYRPDILVITGH 163 (287)
T ss_pred hHHhhHHHHHHHHHcCCCEEEEeCc
Confidence 3456778888999999999999993
No 150
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=44.89 E-value=91 Score=25.71 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=33.4
Q ss_pred HHHHHHhcCCCEEEEcCcc-CCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 45 FQTAVALHQPEHIFVLGDL-LDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 45 ~~~~~~~~~pd~vi~~GDl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
+...+.....|++++.|=. + +.+...+..+++++. .++|++.-|||++.
T Consensus 16 ia~~v~~~gtDaI~VGGS~gv------t~~~~~~~v~~ik~~----~~lPvilfp~~~~~ 65 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGSLGI------VESNLDQTVKKIKKI----TNLPVILFPGNVNG 65 (205)
T ss_pred HHHHHHhcCCCEEEEcCcCCC------CHHHHHHHHHHHHhh----cCCCEEEECCCccc
Confidence 4445556789999998863 2 233445555666653 36899999999995
No 151
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=44.63 E-value=1.3e+02 Score=23.65 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCccCCCCc
Q psy2930 40 QMYKTFQTAVALHQPEHIFVLGDLLDEGQ 68 (293)
Q Consensus 40 ~~~~~~~~~~~~~~pd~vi~~GDl~~~~~ 68 (293)
.+.+++.++++..+.|+||.+|-..-+..
T Consensus 50 ~i~~~l~~~~~~~~~DlVIttGGtg~g~~ 78 (163)
T TIGR02667 50 QIRAQVSAWIADPDVQVILITGGTGFTGR 78 (163)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcCCCCC
Confidence 35566666555567999999998766444
No 152
>KOG0375|consensus
Probab=42.90 E-value=59 Score=29.20 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=27.2
Q ss_pred CEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCC
Q psy2930 55 EHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMG 104 (293)
Q Consensus 55 d~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~ 104 (293)
---+++||-|+.|.-+. +..- +-.-.++. .....+.+.|||+..
T Consensus 116 t~YLFLGDYVDRGyFSi--ECvl-YLwsLKi~---yp~tl~lLRGNHECr 159 (517)
T KOG0375|consen 116 TRYLFLGDYVDRGYFSI--ECVL-YLWSLKIN---YPKTLFLLRGNHECR 159 (517)
T ss_pred ceeEeeccccccceeee--ehHH-HHHHHhcC---CCCeEEEecCCcchh
Confidence 34578999999887432 1222 22223443 344689999999983
No 153
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=42.57 E-value=22 Score=30.69 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=18.9
Q ss_pred HHHHHHHhhcCcc-EEEecCCCC
Q psy2930 228 ESTDMLLDYLNPR-LVIDGHTHN 249 (293)
Q Consensus 228 ~~~~~ll~~~~~~-lvl~GH~H~ 249 (293)
+...++|++++|+ +|++||+=-
T Consensus 144 ~~i~~Ll~~~~PDIlViTGHD~~ 166 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILVITGHDGY 166 (287)
T ss_pred HHHHHHHHHcCCCEEEEeCchhh
Confidence 4678999999999 789999864
No 154
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=42.01 E-value=23 Score=30.42 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=18.7
Q ss_pred HHHHHHHhhcCcc-EEEecCCCC
Q psy2930 228 ESTDMLLDYLNPR-LVIDGHTHN 249 (293)
Q Consensus 228 ~~~~~ll~~~~~~-lvl~GH~H~ 249 (293)
+....+|++++|+ +|++||+=-
T Consensus 143 ~~i~~Ll~~~~PDIlViTGHD~~ 165 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVITGHDAY 165 (283)
T ss_pred HHHHHHHHHhCCCEEEEeCchhh
Confidence 4678899999999 789999843
No 155
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=39.98 E-value=36 Score=25.68 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCCEEEEcCccCCCC
Q psy2930 41 MYKTFQTAVALHQPEHIFVLGDLLDEG 67 (293)
Q Consensus 41 ~~~~~~~~~~~~~pd~vi~~GDl~~~~ 67 (293)
+.+++.++++ +.|+||.+|-+.-..
T Consensus 48 i~~~i~~~~~--~~DlvittGG~g~g~ 72 (133)
T cd00758 48 IRAALIEASR--EADLVLTTGGTGVGR 72 (133)
T ss_pred HHHHHHHHHh--cCCEEEECCCCCCCC
Confidence 4455555544 389999999977643
No 156
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=39.29 E-value=63 Score=27.31 Aligned_cols=47 Identities=13% Similarity=0.018 Sum_probs=23.7
Q ss_pred CEEEEcCccCCCCc--cCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCC
Q psy2930 55 EHIFVLGDLLDEGQ--YVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMG 104 (293)
Q Consensus 55 d~vi~~GDl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~ 104 (293)
+-++++||.+..+. ...+....++++.+.++. ..+....++|| |++.
T Consensus 119 ~~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l~--~l~~~~~i~pG-H~~~ 167 (248)
T TIGR03413 119 SPALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLA--ALPDDTLVYCA-HEYT 167 (248)
T ss_pred CCEEEEcCccccCCcCCCCCCCHHHHHHHHHHHH--cCCCCeEEECC-CCch
Confidence 34899999765321 111122333344444443 22334567888 8753
No 157
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=36.71 E-value=1.1e+02 Score=27.46 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhc--CCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 41 MYKTFQTAVALH--QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 41 ~~~~~~~~~~~~--~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
+...+...+... +||.|+++|=+... +. + .+.+.+.+. .-.||+++||.-++
T Consensus 279 la~~Ia~l~~~l~g~pD~IV~gGGI~e~-----~~-l---~~~I~~~l~--~~a~v~~~pg~~e~ 332 (351)
T TIGR02707 279 IAKEIGKMAVVLKGKVDAIVLTGGLAYS-----KY-F---VSEIIKRVS--FIAPVLVYPGEDEM 332 (351)
T ss_pred HHHHHHHHHHHhCCCCCEEEEcchhhcC-----HH-H---HHHHHHHHH--hhCCEEEeCCcHHH
Confidence 444455555667 79999999988752 11 2 233333331 23699999995543
No 158
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=35.69 E-value=70 Score=27.13 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=24.0
Q ss_pred EEEcCccCCCCc--cCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCC
Q psy2930 57 IFVLGDLLDEGQ--YVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMG 104 (293)
Q Consensus 57 vi~~GDl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~ 104 (293)
++++||.+-.+. ...+....+.++.+.++. ..+..+.+.|| |++.
T Consensus 122 ~lFtGDtlf~~g~gr~f~g~~~~~~~Sl~kl~--~l~~~t~i~pg-H~y~ 168 (251)
T PRK10241 122 YLFCGDTLFSGGCGRLFEGTASQMYQSLKKIN--ALPDDTLICCA-HEYT 168 (251)
T ss_pred cEEEcCeeccCCcCCCCCCCHHHHHHHHHHHH--cCCCCEEEECC-CCCh
Confidence 699999555422 111222344445555444 23345677788 8874
No 159
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=35.31 E-value=50 Score=25.95 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcC
Q psy2930 39 WQMYKTFQTAVALHQPEHIFVLG 61 (293)
Q Consensus 39 ~~~~~~~~~~~~~~~pd~vi~~G 61 (293)
+.+.+.+.+.+++.+||+||+|=
T Consensus 75 ~~~~~~l~~~l~~~~PD~IIsTh 97 (169)
T PF06925_consen 75 RLFARRLIRLLREFQPDLIISTH 97 (169)
T ss_pred HHHHHHHHHHHhhcCCCEEEECC
Confidence 34667788888999999999973
No 160
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=34.17 E-value=1.8e+02 Score=21.06 Aligned_cols=52 Identities=12% Similarity=-0.052 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 44 TFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 44 ~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
.+.+.+.+.+||+|.++.=.... ........+.+++.. ++-..+++-|+|-.
T Consensus 41 ~l~~~~~~~~pdvV~iS~~~~~~-----~~~~~~~i~~l~~~~---~~~~~i~vGG~~~~ 92 (119)
T cd02067 41 EIVEAAKEEDADAIGLSGLLTTH-----MTLMKEVIEELKEAG---LDDIPVLVGGAIVT 92 (119)
T ss_pred HHHHHHHHcCCCEEEEecccccc-----HHHHHHHHHHHHHcC---CCCCeEEEECCCCC
Confidence 45666778899999997764442 223444455555532 22355889999843
No 161
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=34.13 E-value=46 Score=27.84 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=21.1
Q ss_pred CccEEEecCCCCCceeeccCCCeeEEeccce
Q psy2930 238 NPRLVIDGHTHNGCHKYHAYGKVHEYTVPSF 268 (293)
Q Consensus 238 ~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~ 268 (293)
+.+.+++||+|...... .++...|.++|+
T Consensus 181 ~~~~vv~GHt~~~~~~~--~~~~i~IDtGav 209 (234)
T cd07423 181 GDALVVYGHTPVPEPRW--LNNTINIDTGCV 209 (234)
T ss_pred CCeEEEECCCCCccceE--eCCEEEEECCCC
Confidence 46789999999986543 235677777774
No 162
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=33.58 E-value=1.6e+02 Score=20.36 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=33.3
Q ss_pred HHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 45 FQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 45 ~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
+.+.+.+..||++++-.++-+.. ..+..+.++... ..+|++++..++|.
T Consensus 35 ~~~~~~~~~~d~iiid~~~~~~~-------~~~~~~~i~~~~---~~~~ii~~t~~~~~ 83 (112)
T PF00072_consen 35 ALELLKKHPPDLIIIDLELPDGD-------GLELLEQIRQIN---PSIPIIVVTDEDDS 83 (112)
T ss_dssp HHHHHHHSTESEEEEESSSSSSB-------HHHHHHHHHHHT---TTSEEEEEESSTSH
T ss_pred HHHHhcccCceEEEEEeeecccc-------cccccccccccc---ccccEEEecCCCCH
Confidence 34555678899999988877732 234455565543 57898888877774
No 163
>smart00475 53EXOc 5'-3' exonuclease.
Probab=33.54 E-value=1.4e+02 Score=25.54 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcCccCCC------------CccCChhhHHHHHHHHHhhhcCCCCceEEEecC
Q psy2930 41 MYKTFQTAVALHQPEHIFVLGDLLDE------------GQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPG 99 (293)
Q Consensus 41 ~~~~~~~~~~~~~pd~vi~~GDl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G 99 (293)
+.+.+...++..+|+.++++=|--.. .+...++.+...+..+++++. ..++|++..+|
T Consensus 36 ~~~~l~~l~~~~~p~~~~~~fD~~~~~~R~~l~p~YKa~R~~~pe~L~~q~~~~~~~l~-~~gi~~i~~~g 105 (259)
T smart00475 36 FLRMLLKLIKEEKPTYVAVVFDAKGKTFRHELYPEYKANRPKTPDELLEQIPLIKELLD-ALGIPVLEVEG 105 (259)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCccccchhHHHHhCCCCCCHHHHHHHHHHHHHHH-HCCCCEEeeCC
Confidence 55667777778899999998885321 112224555555666666664 46899999888
No 164
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=31.88 E-value=1.5e+02 Score=27.75 Aligned_cols=75 Identities=13% Similarity=0.054 Sum_probs=46.7
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
.|+.+ +|+.=. +....+..++.+.+++.+++++.+|+++++.|==+-.- .-+......+++.+ ..++
T Consensus 63 ~r~~~-tdl~E~-----Di~~~~g~~~~L~~~i~ei~~~~~p~~ifv~~TC~t~i---IGdDle~va~~~~~----~~gi 129 (457)
T CHL00073 63 PRYAM-AELEEG-----DISAQLNDYEELKRLCLQIKKDRNPSVIVWIGTCTTEI---IKMDLEGMAPKLEA----EIGI 129 (457)
T ss_pred cccee-cccCch-----hhhhhcCCHHHHHHHHHHHHHhCCCCEEEEEccCcHHh---hccCHHHHHHHHHH----hhCC
Confidence 67777 777542 22222334567888999999999999999887533211 11224444455554 3478
Q ss_pred eEEEecCC
Q psy2930 93 ELHVVPGN 100 (293)
Q Consensus 93 ~~~~v~GN 100 (293)
||+.+-+|
T Consensus 130 pVV~v~~~ 137 (457)
T CHL00073 130 PIVVARAN 137 (457)
T ss_pred CEEEEeCC
Confidence 99888774
No 165
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=31.75 E-value=66 Score=24.62 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcCccCCC
Q psy2930 41 MYKTFQTAVALHQPEHIFVLGDLLDE 66 (293)
Q Consensus 41 ~~~~~~~~~~~~~pd~vi~~GDl~~~ 66 (293)
+.+++.++++ +.|+||.+|-+.-.
T Consensus 56 i~~~l~~~~~--~~DliIttGG~g~g 79 (144)
T TIGR00177 56 IREILRKAVD--EADVVLTTGGTGVG 79 (144)
T ss_pred HHHHHHHHHh--CCCEEEECCCCCCC
Confidence 4444444432 79999999986653
No 166
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=31.41 E-value=67 Score=26.30 Aligned_cols=10 Identities=30% Similarity=0.405 Sum_probs=8.2
Q ss_pred EEecCCCCCC
Q psy2930 95 HVVPGNHDMG 104 (293)
Q Consensus 95 ~~v~GNHD~~ 104 (293)
|+||||.|-.
T Consensus 149 ypIP~Ndds~ 158 (196)
T TIGR01012 149 LVIPTNNKGR 158 (196)
T ss_pred EEECCCCchH
Confidence 8899999863
No 167
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=30.67 E-value=2.3e+02 Score=26.64 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=31.5
Q ss_pred HHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 46 QTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 46 ~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
.+.+...+||.|+++|=. |+|. .+.....++.+.+. ..++| +++.||-|.
T Consensus 113 l~~I~~~~PDIILLaGGt-DGG~---~e~~l~NA~~La~~---~~~~p-IIyAGN~~a 162 (463)
T TIGR01319 113 IEAIEESNLDIILFAGGT-DGGE---EECGIHNAKMLAEH---GLDCA-IIVAGNKDI 162 (463)
T ss_pred HHHHhhcCCCEEEEeCCc-CCCc---hHHHHHHHHHHHhc---CCCCc-EEEeCCHHH
Confidence 455566899999999964 4443 12223334444433 45677 677899987
No 168
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=30.51 E-value=83 Score=26.53 Aligned_cols=49 Identities=18% Similarity=0.340 Sum_probs=25.7
Q ss_pred EEcCccCCCCc--cCChhhHHHHHHHHHhhhcC-C--CCceEEEecCCCCCCCC
Q psy2930 58 FVLGDLLDEGQ--YVGGEDFDNYVRRFYSLFST-P--DGTELHVVPGNHDMGFH 106 (293)
Q Consensus 58 i~~GDl~~~~~--~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~v~GNHD~~~~ 106 (293)
+++||-+...- .-.++........++.+-+. + -...|.++.|||+..+.
T Consensus 89 iflgdhtgdrfsti~gd~yiltllnsm~nme~nkdsrinknvvvlagnhein~n 142 (318)
T PF13258_consen 89 IFLGDHTGDRFSTIFGDQYILTLLNSMRNMEGNKDSRINKNVVVLAGNHEINFN 142 (318)
T ss_pred eeecCcccchhhhhcchHHHHHHHHHHHhcccccccccccceEEEecCceeccC
Confidence 56666554311 11233344444444443211 1 24458999999999763
No 169
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=29.67 E-value=2.1e+02 Score=24.16 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=34.4
Q ss_pred HHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 45 FQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 45 ~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
+.+.+....-|+|++.|=.-- +.+...+..+++++. .++|++.-||||..
T Consensus 33 i~~~~~~~GTDaImIGGS~gv-----t~~~~~~~v~~ik~~----~~lPvilfP~~~~~ 82 (240)
T COG1646 33 IAEAAAEAGTDAIMIGGSDGV-----TEENVDNVVEAIKER----TDLPVILFPGSPSG 82 (240)
T ss_pred HHHHHHHcCCCEEEECCcccc-----cHHHHHHHHHHHHhh----cCCCEEEecCChhc
Confidence 344455678999999985422 223455556666653 57899999999986
No 170
>KOG3873|consensus
Probab=29.61 E-value=1.5e+02 Score=26.74 Aligned_cols=50 Identities=14% Similarity=0.415 Sum_probs=29.5
Q ss_pred EEEEEecCCcCCCCCC---ch-hHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCC
Q psy2930 14 KAIFIADTHLLGPFRG---HW-FDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLD 65 (293)
Q Consensus 14 ri~~iSD~H~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~ 65 (293)
+++.+=-+|+=.++.. .+ -.+..+.|.+.+.+... ..+.|.||.+||+=-
T Consensus 128 ~~v~~yntHLHAeY~rq~D~YL~HR~~QAwdlaqfi~~t--~q~~~vVI~~GDLN~ 181 (422)
T KOG3873|consen 128 RMVNLYNTHLHAEYDRQNDEYLCHRVAQAWDLAQFIRAT--RQNADVVILAGDLNM 181 (422)
T ss_pred EEeeeeehhccccccccCchhhhHHHHHHHHHHHHHHHH--hcCCcEEEEecCCCC
Confidence 4555555565444321 22 23455566665555442 468999999999865
No 171
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=28.93 E-value=82 Score=25.76 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCccC
Q psy2930 39 WQMYKTFQTAVALHQPEHIFVLGDLL 64 (293)
Q Consensus 39 ~~~~~~~~~~~~~~~pd~vi~~GDl~ 64 (293)
..+.+++.+.++..+||+|+++|=+-
T Consensus 65 ~~~d~~l~~~l~~~~~dlvvLAGyMr 90 (200)
T COG0299 65 EAFDRALVEALDEYGPDLVVLAGYMR 90 (200)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcchHH
Confidence 34777889999999999999999643
No 172
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=28.62 E-value=1.3e+02 Score=25.90 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCc
Q psy2930 39 WQMYKTFQTAVALHQPEHIFVLGD 62 (293)
Q Consensus 39 ~~~~~~~~~~~~~~~pd~vi~~GD 62 (293)
..+-+.+.+.+++.+||.|++||=
T Consensus 139 ~eqp~~i~~Ll~~~~PDIlViTGH 162 (283)
T TIGR02855 139 KEMPEKVLDLIEEVRPDILVITGH 162 (283)
T ss_pred hhchHHHHHHHHHhCCCEEEEeCc
Confidence 346677888899999999999993
No 173
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=27.25 E-value=1.8e+02 Score=20.72 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCC
Q psy2930 45 FQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNH 101 (293)
Q Consensus 45 ~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNH 101 (293)
..+.+++-+..+||++.|.-.. . .+.+..... ..++|++...|+-
T Consensus 24 v~kai~~gkaklViiA~D~~~~--------~---~~~i~~~c~-~~~Ip~~~~~~tk 68 (99)
T PRK01018 24 TIKAIKLGKAKLVIVASNCPKD--------I---KEDIEYYAK-LSGIPVYEYEGSS 68 (99)
T ss_pred HHHHHHcCCceEEEEeCCCCHH--------H---HHHHHHHHH-HcCCCEEEECCCH
Confidence 3455666789999999996331 1 222333322 3578988876654
No 174
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=26.52 E-value=86 Score=25.54 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCCEEEEcCccCC
Q psy2930 41 MYKTFQTAVALHQPEHIFVLGDLLD 65 (293)
Q Consensus 41 ~~~~~~~~~~~~~pd~vi~~GDl~~ 65 (293)
..+.+.+.+++.+||+|+++|=--.
T Consensus 48 s~~~l~~~i~~~qPd~vl~iG~A~G 72 (207)
T COG2039 48 SIDALVQAIAEVQPDLVLAIGQAGG 72 (207)
T ss_pred HHHHHHHHHHhhCCCeEEEecccCC
Confidence 4566778888899999999996554
No 175
>PRK09482 flap endonuclease-like protein; Provisional
Probab=26.46 E-value=2.3e+02 Score=24.25 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCCEEEEcCccCCCC--------------ccCChhhHHHHHHHHHhhhcCCCCceEEEecC
Q psy2930 41 MYKTFQTAVALHQPEHIFVLGDLLDEG--------------QYVGGEDFDNYVRRFYSLFSTPDGTELHVVPG 99 (293)
Q Consensus 41 ~~~~~~~~~~~~~pd~vi~~GDl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G 99 (293)
+.+.+.+.++..+|+.++++=|.-... +...++++...+..+++++. ..++|++..+|
T Consensus 34 f~~~l~~ll~~~~p~~i~v~fD~~~~~~~fR~~l~p~YKa~R~~~Pe~l~~Q~~~i~~~l~-~~gi~~~~~~g 105 (256)
T PRK09482 34 CQHALDKLIRHSQPTHAVAVFDGDARSSGWRHQLLPDYKAGRKPMPEALQQGLPAIRAAFE-ELGIDSWHADG 105 (256)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeCCCCCcccHHHHhHHHhcCCCCCcHHHHHHHHHHHHHHH-hCCCCEeccCC
Confidence 567788888889999999988863221 12235566666777777764 46888888887
No 176
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=26.26 E-value=2.6e+02 Score=22.02 Aligned_cols=50 Identities=12% Similarity=0.021 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceE
Q psy2930 44 TFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTEL 94 (293)
Q Consensus 44 ~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (293)
.+...++..++|.||++|=++.+.....+.-.....+.+.++- .+.++|+
T Consensus 60 ~a~~l~~~~~yDaiIaLG~VIrGeT~H~e~V~~~v~~gl~~vs-l~~~~PV 109 (158)
T PRK12419 60 HAQTLAKTGRYAAIVAAALVVDGGIYRHEFVAQAVIDGLMRVQ-LDTEVPV 109 (158)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCCchhHHHHHHHHHHHHHHH-hccCCCE
Confidence 3344455568999999999999766544444555555666553 2568886
No 177
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.11 E-value=2.8e+02 Score=21.24 Aligned_cols=9 Identities=22% Similarity=0.564 Sum_probs=5.5
Q ss_pred EEEEecCCc
Q psy2930 15 AIFIADTHL 23 (293)
Q Consensus 15 i~~iSD~H~ 23 (293)
|+++.|.+.
T Consensus 2 v~~~GdSi~ 10 (169)
T cd01828 2 LVFLGDSLT 10 (169)
T ss_pred EEEecchhh
Confidence 556666655
No 178
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.95 E-value=2.6e+02 Score=20.52 Aligned_cols=50 Identities=16% Similarity=-0.055 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCC
Q psy2930 44 TFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNH 101 (293)
Q Consensus 44 ~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNH 101 (293)
.+.+.+.+.+||+|++.+-... ......+..+.+++.. .....+++-|+.
T Consensus 41 ~~~~~a~~~~~d~V~iS~~~~~-----~~~~~~~~~~~L~~~~---~~~i~i~~GG~~ 90 (122)
T cd02071 41 EIVEAAIQEDVDVIGLSSLSGG-----HMTLFPEVIELLRELG---AGDILVVGGGII 90 (122)
T ss_pred HHHHHHHHcCCCEEEEcccchh-----hHHHHHHHHHHHHhcC---CCCCEEEEECCC
Confidence 4566667789999999887643 2233445455555532 223457777763
No 179
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=25.92 E-value=1.6e+02 Score=18.90 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=28.3
Q ss_pred cCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEec
Q psy2930 52 HQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVP 98 (293)
Q Consensus 52 ~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 98 (293)
.=++.|++.=|+.+.+.. +-+++...++.+++.+ .+.|++.|.
T Consensus 12 hL~~~ilfi~D~Se~CGy-sie~Q~~L~~~ik~~F---~~~P~i~V~ 54 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGY-SIEEQLSLFKEIKPLF---PNKPVIVVL 54 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS--HHHHHHHHHHHHHHT---TTS-EEEEE
T ss_pred hhcceEEEEEcCCCCCCC-CHHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 457899999999997553 4456677788898887 467887764
No 180
>PRK00955 hypothetical protein; Provisional
Probab=25.90 E-value=6.4e+02 Score=24.77 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=23.8
Q ss_pred cCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecC
Q psy2930 52 HQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPG 99 (293)
Q Consensus 52 ~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G 99 (293)
...|+|+++||-.=.- +.-...++.++.+ ..|-.|.+++-
T Consensus 12 ~~~d~i~v~gdayvdh----p~fg~a~i~r~L~----~~G~~v~ii~q 51 (620)
T PRK00955 12 DELDFILVTGDAYVDH----PSFGTAIIGRVLE----AEGFRVGIIAQ 51 (620)
T ss_pred CccCEEEEeCcccccC----CccHHHHHHHHHH----HCCCEEEEecC
Confidence 3789999999944322 2234445555554 34667766643
No 181
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=25.80 E-value=80 Score=27.54 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=27.6
Q ss_pred CCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 53 QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 53 ~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
+||+|++||-|... +.+...+.+-.+.+ .|+++.||-.++
T Consensus 296 ~vDaIvLTGGiA~~------~~f~~~I~~~v~~i-----apv~v~PGE~El 335 (358)
T COG3426 296 KVDAIVLTGGIAYE------KLFVDAIEDRVSWI-----APVIVYPGEDEL 335 (358)
T ss_pred CCCEEEEecchhhH------HHHHHHHHHHHhhh-----cceEecCCchHH
Confidence 99999999999872 23333333333333 489999998876
No 182
>PF14360 PAP2_C: PAP2 superfamily C-terminal
Probab=25.63 E-value=26 Score=23.58 Aligned_cols=9 Identities=44% Similarity=0.807 Sum_probs=7.4
Q ss_pred ccEEEecCC
Q psy2930 239 PRLVIDGHT 247 (293)
Q Consensus 239 ~~lvl~GH~ 247 (293)
-|++||||+
T Consensus 3 gDliFSGHt 11 (74)
T PF14360_consen 3 GDLIFSGHT 11 (74)
T ss_pred CCEEEchhH
Confidence 478999996
No 183
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=24.76 E-value=2.9e+02 Score=23.61 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecC
Q psy2930 42 YKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPG 99 (293)
Q Consensus 42 ~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G 99 (293)
.+.....+....+|.|+++|.-+.... +. +...++++.. ++|+++-.|
T Consensus 161 ~~~~~~a~~~~~aDaviVtG~~TG~~~--~~----~~l~~vr~~~----~~PVlvGSG 208 (254)
T PF03437_consen 161 EEAAKDAVERGGADAVIVTGKATGEPP--DP----EKLKRVREAV----PVPVLVGSG 208 (254)
T ss_pred HHHHHHHHHhcCCCEEEECCcccCCCC--CH----HHHHHHHhcC----CCCEEEecC
Confidence 344455556679999999999886433 21 2244455544 378887666
No 184
>PRK14976 5'-3' exonuclease; Provisional
Probab=24.70 E-value=2.3e+02 Score=24.61 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcCccCCC------------CccCChhhHHHHHHHHHhhhcCCCCceEEEecC
Q psy2930 41 MYKTFQTAVALHQPEHIFVLGDLLDE------------GQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPG 99 (293)
Q Consensus 41 ~~~~~~~~~~~~~pd~vi~~GDl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G 99 (293)
+.+.+.+.++..+|+.+++.=|--.. .+...++.+...+..+++++. ..++|++..+|
T Consensus 42 f~~~l~~ll~~~~p~~~~v~fD~~~~~~R~~l~p~YKanR~~~p~~l~~q~~~i~~~l~-~~gi~~~~~~g 111 (281)
T PRK14976 42 FLTMIFKILKKLNPSYILIAFDAGRKTFRHQLYDEYKQGRKKTPESLISQIPLLKKILK-LAGIKWEEQPG 111 (281)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECCCCcccccccHHHhcCCCCCCHHHHHHHHHHHHHHH-HCCCCEEecCC
Confidence 55667777788899988888885321 111224455555666666654 46888888885
No 185
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=23.78 E-value=3e+02 Score=21.08 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=32.9
Q ss_pred HHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceE
Q psy2930 45 FQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTEL 94 (293)
Q Consensus 45 ~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (293)
+...+++.++|.++.+|=++.+.....+.-.....+.+.++- .+.++|+
T Consensus 51 ~~~l~~~~~~DavI~LG~VIrG~T~H~e~v~~~v~~gl~~~s-l~~~~PV 99 (138)
T TIGR00114 51 VKKLAETGKYDAVIALGCVIRGGTPHFEYVADEAAKGIADLA-LDYDKPV 99 (138)
T ss_pred HHHHHhcCCCCEEEEEeeEEeCCCchhHHHHHHHHHHHHHHH-hhhCCCE
Confidence 344455568999999999999766544444555566666653 2567886
No 186
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=23.61 E-value=2e+02 Score=25.54 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcCccCC
Q psy2930 41 MYKTFQTAVALHQPEHIFVLGDLLD 65 (293)
Q Consensus 41 ~~~~~~~~~~~~~pd~vi~~GDl~~ 65 (293)
+...+.+.+++.+||+|++.||-..
T Consensus 74 ~~~~l~~~l~~~~pDiv~~~gd~~~ 98 (365)
T TIGR00236 74 MLEGLEELLLEEKPDIVLVQGDTTT 98 (365)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchH
Confidence 4456777888899999999999643
No 187
>PF13941 MutL: MutL protein
Probab=23.53 E-value=3e+02 Score=25.81 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=31.4
Q ss_pred HHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 46 QTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 46 ~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
.+.+...+||.|+++|=. |+|. .+......+.+.+. ...+| +++.||-+.
T Consensus 117 l~~i~~~~PDiILLaGGt-DgG~---~~~il~nA~~La~~---~~~~p-VIyAGN~~a 166 (457)
T PF13941_consen 117 LEEIREIRPDIILLAGGT-DGGN---KEVILHNAEMLAEA---NLRIP-VIYAGNKAA 166 (457)
T ss_pred HHHHhccCCCEEEEeCCc-cCCc---hHHHHHHHHHHHhC---CCCCc-EEEECCHHH
Confidence 344677899999999964 3444 22333434444433 34556 778899986
No 188
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=23.51 E-value=2.4e+02 Score=19.60 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=29.9
Q ss_pred HHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 46 QTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 46 ~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
.+.+++-....|++++|.-.. ....+..+.+ +.++|+.+++==.|+
T Consensus 22 ~Kai~kg~~~~v~iA~Da~~~-----------vv~~l~~lce-ek~Ip~v~V~s~~~L 67 (84)
T PRK13600 22 LKALKKDQVTSLIIAEDVEVY-----------LMTRVLSQIN-QKNIPVSFFKSKHAL 67 (84)
T ss_pred HHHHhcCCceEEEEeCCCCHH-----------HHHHHHHHHH-HcCCCEEEECCHHHH
Confidence 445566789999999998752 1233444443 578999888654443
No 189
>PRK03011 butyrate kinase; Provisional
Probab=23.30 E-value=2.8e+02 Score=25.05 Aligned_cols=50 Identities=22% Similarity=0.265 Sum_probs=30.0
Q ss_pred HHHHHHHHhc--CCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 43 KTFQTAVALH--QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 43 ~~~~~~~~~~--~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
..+...+... +||.||++|=+.+ .. . +. +.+.+.+. .-.|+.++||+.+.
T Consensus 283 k~I~~l~~~L~gdpD~IVlgGGI~~-~~----~-l~---~~I~~~l~--~~~pv~i~p~~~e~ 334 (358)
T PRK03011 283 KEIGAMAAVLKGKVDAIVLTGGLAY-SK----R-LV---ERIKERVS--FIAPVIVYPGEDEM 334 (358)
T ss_pred HHHHHHHHHhCCCCCEEEEeCcccc-CH----H-HH---HHHHHHHH--hhCCeEEEeCCCHH
Confidence 3444444455 7999999988875 21 1 22 22333321 11489999998874
No 190
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=22.90 E-value=1e+02 Score=21.11 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCC
Q psy2930 45 FQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMG 104 (293)
Q Consensus 45 ~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~ 104 (293)
..+.+++-+..+||++.|.-.. . .+.+..... ..++|++.++=+.|++
T Consensus 19 v~kai~~gkaklViiA~D~~~~--------~---~~~i~~~c~-~~~Vp~~~~~s~~eLG 66 (82)
T PRK13602 19 TVKALKRGSVKEVVVAEDADPR--------L---TEKVEALAN-EKGVPVSKVDSMKKLG 66 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHH--------H---HHHHHHHHH-HcCCCEEEECCHHHHH
Confidence 3455667899999999998762 1 223333332 4579998887656553
No 191
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=22.67 E-value=2.1e+02 Score=26.05 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=19.2
Q ss_pred HHHHHHhhcC---------ccEEEecCCCCCceee
Q psy2930 229 STDMLLDYLN---------PRLVIDGHTHNGCHKY 254 (293)
Q Consensus 229 ~~~~ll~~~~---------~~lvl~GH~H~~~~~~ 254 (293)
.+.+|..+++ .++++.||.|......
T Consensus 182 ~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~l 216 (388)
T COG1168 182 KIAELCLRHGVRVISDEIHADLVLGGHKHIPFASL 216 (388)
T ss_pred HHHHHHHHcCCEEEeecccccccccCCCccchhhc
Confidence 4566777775 3578999999998754
No 192
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=22.31 E-value=3e+02 Score=24.14 Aligned_cols=46 Identities=15% Similarity=0.285 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCC
Q psy2930 41 MYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGN 100 (293)
Q Consensus 41 ~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GN 100 (293)
+...+.+.+.+.+||+|++.||-.. .+ ...+.... .++|++.+.|+
T Consensus 76 ~~~~l~~~l~~~~pDvV~~~g~~~~--------~~---~~~~aa~~---~~iPvv~~~~g 121 (363)
T cd03786 76 LLIGLEAVLLEEKPDLVLVLGDTNE--------TL---AAALAAFK---LGIPVAHVEAG 121 (363)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCchH--------HH---HHHHHHHH---cCCCEEEEecc
Confidence 4455666677789999999998532 01 11222222 47898887765
No 193
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=22.29 E-value=91 Score=25.55 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcCccC
Q psy2930 41 MYKTFQTAVALHQPEHIFVLGDLL 64 (293)
Q Consensus 41 ~~~~~~~~~~~~~pd~vi~~GDl~ 64 (293)
..+.+.+.+++.+||+||++|=-.
T Consensus 48 ~~~~l~~~l~~~~PdlVIhlGva~ 71 (202)
T PF01470_consen 48 AFEALEELLEEHQPDLVIHLGVAG 71 (202)
T ss_dssp HHHHHHHHHHHH--SEEEEEEE-T
T ss_pred HHHHHHHHHHhcCCcEEEEEeecC
Confidence 334566677778999999999654
No 194
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=21.93 E-value=1.9e+02 Score=24.07 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=10.5
Q ss_pred CCceEEEecCCC
Q psy2930 90 DGTELHVVPGNH 101 (293)
Q Consensus 90 ~~~~~~~v~GNH 101 (293)
.++||++||||.
T Consensus 3 ~g~pVlFIhG~~ 14 (225)
T PF07819_consen 3 SGIPVLFIHGNA 14 (225)
T ss_pred CCCEEEEECcCC
Confidence 578999999975
No 195
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=21.83 E-value=3.7e+02 Score=20.55 Aligned_cols=13 Identities=15% Similarity=-0.095 Sum_probs=8.8
Q ss_pred eEEEecCCCCCCC
Q psy2930 93 ELHVVPGNHDMGF 105 (293)
Q Consensus 93 ~~~~v~GNHD~~~ 105 (293)
-+++..|-+|...
T Consensus 67 ~v~i~~G~ND~~~ 79 (177)
T cd01822 67 LVILELGGNDGLR 79 (177)
T ss_pred EEEEeccCccccc
Confidence 4677778778643
No 196
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=21.68 E-value=3.1e+02 Score=23.07 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCCEEEEcCccCCC------------CccCChhhHHHHHHHHHhhhcCCCCceEEEecC
Q psy2930 41 MYKTFQTAVALHQPEHIFVLGDLLDE------------GQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPG 99 (293)
Q Consensus 41 ~~~~~~~~~~~~~pd~vi~~GDl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G 99 (293)
+...+.+.++..+|+.+++.=|--.. .+...++.+...+..+++++. ..++|++..+|
T Consensus 37 ~~~~l~~~~~~~~p~~~~~~fD~~~~~~R~~l~p~YK~~R~~~p~~l~~q~~~~~~~l~-~~gi~~i~~~~ 106 (240)
T cd00008 37 FLNMLLKLIKEYKPTYVAVVFDAGGKTFRHELYPEYKANRKKMPEELREQIPLIKELLE-ALGIPVLEIEG 106 (240)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCcccccccHHHHcCCCCCCHHHHHHHHHHHHHHH-HCCCCEEecCC
Confidence 55567777778889988888886421 111235556666677777664 46899998886
No 197
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=21.55 E-value=3.6e+02 Score=20.74 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceE---EEecCCCC
Q psy2930 44 TFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTEL---HVVPGNHD 102 (293)
Q Consensus 44 ~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~GNHD 102 (293)
++...++..++|.||.+|=++.+.....+.-.....+.+.++. .+.++|+ +..++|.+
T Consensus 57 a~~~l~~s~~~DavIaLG~VIrGeT~H~e~V~~~v~~gl~~vs-l~~~~PV~~GVLt~~~~e 117 (141)
T PLN02404 57 VAQRLAKSGKYDAILCIGAVIRGDTTHYDAVANSAASGVLSAG-LNSGVPCIFGVLTCDDME 117 (141)
T ss_pred HHHHHHhcCCCCEEEEEEEEEeCCCchhHHHHHHHHHHHHHHH-hccCCCEEEEEcCCCCHH
Confidence 3344445568999999999999766544444455556666553 2567886 33444443
No 198
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=21.21 E-value=1.1e+02 Score=25.57 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCCEEEEcCccC
Q psy2930 43 KTFQTAVALHQPEHIFVLGDLL 64 (293)
Q Consensus 43 ~~~~~~~~~~~pd~vi~~GDl~ 64 (293)
+.+.+.+++.+||+||++|=-.
T Consensus 51 ~~l~~~i~~~~Pd~Vi~~G~a~ 72 (222)
T PRK13195 51 AAAQQAIAEIEPALVIMLGEYP 72 (222)
T ss_pred HHHHHHHHHHCCCEEEEeCccC
Confidence 4566667788999999999543
No 199
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=21.04 E-value=3.2e+02 Score=23.05 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=30.7
Q ss_pred HHHhcCCCEEEEcCcc-CCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 48 AVALHQPEHIFVLGDL-LDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 48 ~~~~~~pd~vi~~GDl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
.+.....|++++.|=. +. .+.......++++ .++|++.-|||++.
T Consensus 27 ~~~~~gtdai~vGGS~~vt------~~~~~~~v~~ik~-----~~lPvilfp~~~~~ 72 (232)
T PRK04169 27 AICESGTDAIIVGGSDGVT------EENVDELVKAIKE-----YDLPVILFPGNIEG 72 (232)
T ss_pred HHHhcCCCEEEEcCCCccc------hHHHHHHHHHHhc-----CCCCEEEeCCCccc
Confidence 3445788999999966 33 2233444455554 35899999999986
No 200
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=20.48 E-value=2.2e+02 Score=21.91 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=21.6
Q ss_pred ccccCHHHHHHHHhhcCcc-EEEecCCCCCce
Q psy2930 222 WECISKESTDMLLDYLNPR-LVIDGHTHNGCH 252 (293)
Q Consensus 222 ~~~l~~~~~~~ll~~~~~~-lvl~GH~H~~~~ 252 (293)
|+......+.+.|++.+++ ++++|=.=..+.
T Consensus 71 ~saf~~t~L~~~L~~~gi~~lii~G~~T~~CV 102 (157)
T cd01012 71 FSCWEDEAFRKALKATGRKQVVLAGLETHVCV 102 (157)
T ss_pred ccCcCCHHHHHHHHhcCCCEEEEEEeeccHHH
Confidence 4555555678899988876 888887655543
No 201
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=20.46 E-value=4.3e+02 Score=23.79 Aligned_cols=80 Identities=9% Similarity=0.234 Sum_probs=45.2
Q ss_pred CCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCC--CCccCChhhHHHHHHHHHhhhc
Q psy2930 10 INNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLD--EGQYVGGEDFDNYVRRFYSLFS 87 (293)
Q Consensus 10 ~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~--~~~~~~~~~~~~~~~~~~~~~~ 87 (293)
...+|.+.++|+-.......... . .+.+.|...+.+.+||+||+== ++. .|...++.+...+.+.++++..
T Consensus 157 Padvrn~dltd~~Gaa~~~d~l~-----p-kl~rRfek~~~Q~rp~~vViDp-~v~f~~G~s~s~vqv~~fi~~~rkla~ 229 (402)
T COG3598 157 PADVRNMDLTDVSGAADESDVLS-----P-KLYRRFEKILEQKRPDFVVIDP-FVAFYEGKSISDVQVKEFIKKTRKLAR 229 (402)
T ss_pred hHhhhheeccccccCCCcccccc-----H-HHHHHHHHHHHHhCCCeEEEcc-hhhhcCCccchhHHHHHHHHHHHHHHH
Confidence 34467777788755222211111 1 3566788888889999998721 221 2333445566666666666553
Q ss_pred CCCCceEEEe
Q psy2930 88 TPDGTELHVV 97 (293)
Q Consensus 88 ~~~~~~~~~v 97 (293)
..++.|+.+
T Consensus 230 -~l~caIiy~ 238 (402)
T COG3598 230 -NLECAIIYI 238 (402)
T ss_pred -hcCCeEEEE
Confidence 345555554
No 202
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=20.10 E-value=1.6e+02 Score=21.72 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=28.5
Q ss_pred HHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 45 FQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 45 ~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
....+++-+..+||+++|..... ...-+..+.+ ..++|++.+.-+.|+
T Consensus 34 v~kaikkgka~LVilA~D~s~~~-------~~~~i~~lc~----~~~Ip~~~~~sk~eL 81 (117)
T TIGR03677 34 VTKAVERGIAKLVVIAEDVEPPE-------IVAHLPALCE----EKGIPYVYVKKKEDL 81 (117)
T ss_pred HHHHHHcCCccEEEEeCCCCcHH-------HHHHHHHHHH----HcCCCEEEeCCHHHH
Confidence 45556667899999999997621 1122333333 357896555444333
Done!