Query psy2930
Match_columns 293
No_of_seqs 130 out of 1339
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 21:15:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ib7_A ICC protein; metallopho 100.0 8.3E-28 2.8E-32 212.0 24.8 234 8-291 21-274 (330)
2 2nxf_A Putative dimetal phosph 100.0 1.1E-27 3.8E-32 209.9 19.0 242 9-291 2-309 (322)
3 3d03_A Phosphohydrolase; glyce 100.0 1.6E-26 5.5E-31 198.4 23.6 229 13-291 1-250 (274)
4 2xmo_A LMO2642 protein; phosph 100.0 2.4E-26 8.1E-31 211.0 24.8 244 9-287 36-322 (443)
5 1ute_A Protein (II purple acid 99.9 7E-26 2.4E-30 197.7 14.7 239 9-291 3-286 (313)
6 3tgh_A Glideosome-associated p 99.9 2.7E-26 9.3E-31 202.3 10.8 231 11-291 2-289 (342)
7 1xzw_A Purple acid phosphatase 99.9 2.7E-21 9.3E-26 176.4 22.3 195 8-253 122-329 (426)
8 1uf3_A Hypothetical protein TT 99.9 1.7E-20 5.7E-25 156.3 22.3 204 10-285 3-219 (228)
9 2yvt_A Hypothetical protein AQ 99.9 1.1E-20 3.9E-25 160.8 19.6 219 11-290 4-256 (260)
10 2qfp_A Purple acid phosphatase 99.9 3.8E-21 1.3E-25 175.3 17.5 195 8-253 115-322 (424)
11 3av0_A DNA double-strand break 99.8 3E-19 1E-23 160.8 19.8 232 5-291 13-260 (386)
12 2q8u_A Exonuclease, putative; 99.8 4.6E-19 1.6E-23 156.7 18.2 241 8-291 14-275 (336)
13 3rl5_A Metallophosphoesterase 99.8 2.5E-17 8.5E-22 141.4 23.5 219 4-284 51-291 (296)
14 3tho_B Exonuclease, putative; 99.7 1.2E-16 4.1E-21 143.3 19.4 233 13-287 1-252 (379)
15 1z2w_A Vacuolar protein sortin 99.7 3.9E-17 1.3E-21 132.9 14.0 61 229-291 108-173 (192)
16 2a22_A Vacuolar protein sortin 99.7 4.5E-17 1.5E-21 134.8 11.2 168 12-291 25-197 (215)
17 4fbk_A DNA repair and telomere 99.7 1.2E-15 4.2E-20 137.9 20.2 238 8-291 72-361 (472)
18 4fbw_A DNA repair protein RAD3 99.7 1.4E-15 5E-20 136.4 20.4 238 8-291 9-298 (417)
19 1nnw_A Hypothetical protein; s 99.7 3.2E-16 1.1E-20 132.7 15.2 209 12-289 1-218 (252)
20 2yeq_A Apased, PHOD, alkaline 99.7 4.6E-15 1.6E-19 138.1 24.2 244 10-291 114-455 (527)
21 1s3l_A Hypothetical protein MJ 99.7 5.5E-16 1.9E-20 125.7 15.7 170 4-290 16-187 (190)
22 3t1i_A Double-strand break rep 99.7 4.4E-15 1.5E-19 133.9 20.3 235 8-291 28-317 (431)
23 3rqz_A Metallophosphoesterase; 99.7 1E-16 3.5E-21 135.5 8.5 192 11-289 2-214 (246)
24 3qfm_A SAPH, putative uncharac 99.7 9.2E-16 3.1E-20 131.2 14.1 210 8-291 7-225 (270)
25 1ii7_A MRE11 nuclease; RAD50, 99.7 2.8E-14 9.5E-19 125.8 23.5 88 13-104 1-88 (333)
26 3ck2_A Conserved uncharacteriz 99.6 8.2E-15 2.8E-19 117.4 14.4 61 229-291 96-158 (176)
27 1xm7_A Hypothetical protein AQ 99.6 3.3E-15 1.1E-19 121.7 9.9 169 12-270 1-174 (195)
28 2kkn_A Uncharacterized protein 99.6 9.1E-14 3.1E-18 111.4 14.3 49 237-292 127-175 (178)
29 1su1_A Hypothetical protein YF 99.5 6.3E-13 2.2E-17 109.2 17.0 77 9-104 22-101 (208)
30 2z1a_A 5'-nucleotidase; metal- 99.1 1.4E-09 4.7E-14 102.0 15.3 89 9-105 26-120 (552)
31 1hp1_A 5'-nucleotidase; metall 99.1 4E-09 1.4E-13 98.2 18.2 87 10-105 6-96 (516)
32 1g5b_A Serine/threonine protei 99.1 1.4E-10 4.6E-15 96.1 6.7 68 11-104 11-79 (221)
33 3e0j_A DNA polymerase subunit 99.0 2.2E-09 7.6E-14 97.0 12.6 203 10-269 198-439 (476)
34 3ive_A Nucleotidase; structura 99.0 1.6E-08 5.3E-13 93.9 16.4 91 10-106 4-99 (509)
35 3qfk_A Uncharacterized protein 98.9 3.2E-08 1.1E-12 92.2 17.4 92 8-106 15-115 (527)
36 4h2g_A 5'-nucleotidase; dimer, 98.9 8.8E-08 3E-12 89.6 18.9 88 11-105 24-119 (546)
37 2wdc_A SOXB, sulfur oxidation 98.9 6.9E-08 2.4E-12 90.5 16.7 54 45-105 110-168 (562)
38 3ztv_A NAD nucleotidase, NADN; 98.8 2.6E-07 9E-12 87.0 19.7 88 11-105 11-107 (579)
39 3c9f_A 5'-nucleotidase; 2',3'- 98.6 2.6E-07 8.7E-12 86.4 12.6 99 2-106 5-109 (557)
40 4h1s_A 5'-nucleotidase; hydrol 98.4 5.2E-05 1.8E-09 70.6 20.3 85 12-106 3-98 (530)
41 1wao_1 Serine/threonine protei 98.3 3E-06 1E-10 77.9 11.8 62 225-288 384-447 (477)
42 3jyf_A 2',3'-cyclic nucleotide 98.3 2.5E-05 8.6E-10 68.4 16.2 57 11-67 7-66 (339)
43 3gve_A YFKN protein; alpha-bet 98.3 2.3E-05 7.8E-10 68.8 14.8 57 11-67 10-69 (341)
44 2qjc_A Diadenosine tetraphosph 98.2 1.6E-06 5.6E-11 73.3 5.1 66 13-104 19-85 (262)
45 2dfj_A Diadenosinetetraphospha 98.1 1.1E-06 3.9E-11 74.9 3.6 67 13-103 1-68 (280)
46 3h63_A Serine/threonine-protei 98.1 6.3E-05 2.1E-09 64.9 13.1 62 225-288 231-294 (315)
47 2z72_A Protein-tyrosine-phosph 98.0 1.4E-05 4.9E-10 70.1 7.2 48 53-103 105-152 (342)
48 1t71_A Phosphatase, conserved 97.9 0.0004 1.4E-08 58.8 15.1 74 12-106 4-77 (281)
49 2ie4_C PP2A-alpha;, serine/thr 97.9 2.3E-05 8E-10 67.6 7.2 72 13-104 50-121 (309)
50 1fjm_A Protein serine/threonin 97.8 4.1E-05 1.4E-09 66.6 7.3 72 13-104 57-128 (330)
51 3icf_A PPT, serine/threonine-p 97.8 7.8E-05 2.7E-09 64.8 8.4 60 224-285 234-295 (335)
52 3e7a_A PP-1A, serine/threonine 97.7 7.5E-05 2.6E-09 63.9 7.2 71 13-103 56-126 (299)
53 3ll8_A Serine/threonine-protei 97.6 0.00013 4.3E-09 63.8 7.1 72 13-104 70-141 (357)
54 2z06_A Putative uncharacterize 97.5 0.0035 1.2E-07 52.1 14.4 101 13-141 1-112 (252)
55 1aui_A Calcineurin, serine/thr 97.5 0.00021 7.1E-09 65.2 7.3 72 13-104 83-154 (521)
56 1t70_A Phosphatase; crystal, X 97.4 0.001 3.5E-08 55.6 10.0 71 13-106 1-71 (255)
57 3flo_A DNA polymerase alpha su 96.4 0.012 4E-07 53.1 8.6 121 10-139 145-289 (460)
58 2kqs_B Death domain-associated 49.9 7.8 0.00027 19.4 1.3 17 8-24 8-24 (26)
59 2z72_A Protein-tyrosine-phosph 47.8 39 0.0014 28.8 6.5 27 226-252 266-292 (342)
60 4hf7_A Putative acylhydrolase; 47.0 40 0.0014 26.0 6.0 53 43-96 68-123 (209)
61 4h17_A Hydrolase, isochorismat 43.0 1.1E+02 0.0039 23.5 8.0 124 117-252 8-137 (197)
62 4hwg_A UDP-N-acetylglucosamine 42.1 36 0.0012 29.6 5.4 25 41-65 82-106 (385)
63 1jlj_A Gephyrin; globular alph 42.0 64 0.0022 24.9 6.3 26 40-65 65-90 (189)
64 1uuy_A CNX1, molybdopterin bio 38.3 82 0.0028 23.6 6.3 26 40-65 58-83 (167)
65 1ivn_A Thioesterase I; hydrola 37.1 1E+02 0.0034 23.0 6.8 16 45-60 54-69 (190)
66 2pbq_A Molybdenum cofactor bio 35.4 1E+02 0.0034 23.5 6.4 26 40-65 55-80 (178)
67 2pjk_A 178AA long hypothetical 34.7 72 0.0025 24.4 5.5 26 40-65 68-93 (178)
68 3ot5_A UDP-N-acetylglucosamine 32.4 68 0.0023 27.9 5.6 26 40-65 101-126 (403)
69 3p94_A GDSL-like lipase; serin 32.3 60 0.0021 24.4 4.8 55 42-97 63-120 (204)
70 3iwt_A 178AA long hypothetical 31.8 1.3E+02 0.0046 22.6 6.7 26 40-65 68-93 (178)
71 1y5e_A Molybdenum cofactor bio 31.8 81 0.0028 23.7 5.3 26 40-65 59-84 (169)
72 3mcw_A Putative hydrolase; iso 29.7 70 0.0024 24.8 4.7 31 222-252 96-127 (198)
73 2xzm_U Ribosomal protein L7AE 28.9 1E+02 0.0035 22.1 5.1 49 45-104 32-80 (126)
74 3pzy_A MOG; ssgcid, seattle st 28.7 1.6E+02 0.0056 21.9 6.5 26 40-66 54-79 (164)
75 2lbw_A H/ACA ribonucleoprotein 28.2 39 0.0013 24.1 2.7 49 45-104 28-76 (121)
76 3cpq_A 50S ribosomal protein L 28.1 1.3E+02 0.0043 20.8 5.4 43 45-99 29-71 (110)
77 1di6_A MOGA, molybdenum cofact 26.7 1.9E+02 0.0063 22.4 6.7 27 40-66 53-79 (195)
78 2ll1_A U1-TRTX-SP1A; toxin; NM 26.3 22 0.00076 18.1 0.8 10 244-253 2-11 (33)
79 3vzx_A Heptaprenylglyceryl pho 24.4 1.5E+02 0.0051 23.7 5.8 44 50-103 28-71 (228)
80 3j21_Z 50S ribosomal protein L 24.0 1.7E+02 0.0057 19.7 5.7 48 45-104 23-71 (99)
81 3w01_A Heptaprenylglyceryl pho 23.4 2.2E+02 0.0074 22.9 6.6 45 49-103 32-76 (235)
82 3hp4_A GDSL-esterase; psychrot 23.4 96 0.0033 22.9 4.4 12 13-24 3-14 (185)
83 1yzf_A Lipase/acylhydrolase; s 23.0 2.2E+02 0.0076 20.7 6.7 13 13-25 2-14 (195)
84 4eyb_A Beta-lactamase NDM-1; m 22.9 93 0.0032 25.2 4.5 44 55-102 201-252 (270)
85 3jyw_G 60S ribosomal protein L 22.1 56 0.0019 23.1 2.5 49 45-104 33-81 (113)
86 2vqe_B 30S ribosomal protein S 22.0 68 0.0023 26.3 3.3 10 53-62 158-167 (256)
87 1w41_A 50S ribosomal protein L 21.5 1.8E+02 0.006 19.6 5.0 46 45-102 24-70 (101)
88 3giu_A Pyrrolidone-carboxylate 21.3 74 0.0025 25.2 3.4 24 41-64 50-73 (215)
89 2obx_A DMRL synthase 1, 6,7-di 21.2 1.6E+02 0.0054 22.1 5.0 51 46-97 63-113 (157)
90 3hdg_A Uncharacterized protein 21.0 2E+02 0.0069 19.5 6.2 48 46-103 44-91 (137)
91 3v7e_A Ribosome-associated pro 20.9 1.3E+02 0.0045 19.5 4.1 48 45-104 19-66 (82)
92 1di0_A Lumazine synthase; tran 20.7 1.4E+02 0.0049 22.3 4.7 51 46-97 62-112 (158)
93 3lac_A Pyrrolidone-carboxylate 20.7 68 0.0023 25.5 3.0 22 43-64 51-72 (215)
94 3eef_A N-carbamoylsarcosine am 20.6 2.3E+02 0.0079 21.3 6.1 31 222-252 93-124 (182)
95 1vq8_F 50S ribosomal protein L 20.3 1.2E+02 0.0041 21.3 4.1 48 45-103 37-84 (120)
No 1
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=99.96 E-value=8.3e-28 Score=211.96 Aligned_cols=234 Identities=15% Similarity=0.178 Sum_probs=158.7
Q ss_pred CCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHh--cCCCEEEEcCccCCCCccCChhhHHHHHHHHHhh
Q psy2930 8 ESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL--HQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSL 85 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~ 85 (293)
.+.++|||+++||+|++......+. ... .....+.+.+.+++ .++|+||++||+++.+.. ..+..+.+.+..+
T Consensus 21 ~~~~~~ri~~iSD~H~~~~~~~~~~-~~~-~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~---~~~~~~~~~l~~l 95 (330)
T 3ib7_A 21 HPRPDYVLLHISDTHLIGGDRRLYG-AVD-ADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEP---AAYRKLRGLVEPF 95 (330)
T ss_dssp SCCCSEEEEEECCCCBCSSSCCBTT-TBC-HHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCCH---HHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCccCCCCccccc-ccC-HHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCH---HHHHHHHHHHHHH
Confidence 5567899999999999765432211 001 11223334444555 699999999999997753 3344433333332
Q ss_pred hcCCCCceEEEecCCCCCCCCCCCCchhHHHHHHHhCC------CCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHH
Q psy2930 86 FSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNS------SMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRI 159 (293)
Q Consensus 86 ~~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l 159 (293)
.. ..++|+++++||||.. ..|...+.. ..++.+..++++|+++|+.... ...+....+|+
T Consensus 96 ~~-~~~~pv~~v~GNHD~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~---~~~~~~~~~q~ 161 (330)
T 3ib7_A 96 AA-QLGAELVWVMGNHDDR----------AELRKFLLDEAPSMAPLDRVCMIDGLRIIVLDTSVPG---HHHGEIRASQL 161 (330)
T ss_dssp HH-HHTCEEEECCCTTSCH----------HHHHHHHHCCCCCCSCCCEEEEETTEEEEECCCCCTT---CCSBCCCHHHH
T ss_pred Hh-hcCCCEEEeCCCCCCH----------HHHHHHhcccccccCCcceEEEeCCEEEEEecCCCCC---CCCCccCHHHH
Confidence 21 1368999999999973 223333321 1357899999999999987632 22344678899
Q ss_pred HHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCc
Q psy2930 160 SLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNP 239 (293)
Q Consensus 160 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~ 239 (293)
+||++.|+.. +..++|+++|||+....... ...+...+.+.+.++++++++
T Consensus 162 ~wl~~~l~~~-------------~~~~~iv~~Hh~p~~~~~~~----------------~~~~~~~~~~~l~~~l~~~~v 212 (330)
T 3ib7_A 162 GWLAEELATP-------------APDGTILALHHPPIPSVLDM----------------AVTVELRDQAALGRVLRGTDV 212 (330)
T ss_dssp HHHHHHTTSC-------------CTTCEEEECSSCSSCCSSGG----------------GGGGSBSCHHHHHHHHTTSSE
T ss_pred HHHHHHHHhc-------------ccCCeEEEEECCCCCCCccc----------------cccccccCHHHHHHHHhccCc
Confidence 9999999865 34558999999997543210 011223455678899999999
Q ss_pred cEEEecCCCCCceeeccCCCeeEEeccceeccC------------CCCCceEEEEEecCCceee
Q psy2930 240 RLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRN------------KNNPSFLMGYVVENSSGVN 291 (293)
Q Consensus 240 ~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~------------~~~p~f~~~~~~~~~~~~~ 291 (293)
+++|+||+|...... .+++++++.||.+... .+.+||.+++++++++.++
T Consensus 213 ~~v~~GH~H~~~~~~--~~g~~~~~~gs~~~~~~~~~~~g~~~~~~~~~gy~iv~i~~~~~~~~ 274 (330)
T 3ib7_A 213 RAILAGHLHYSTNAT--FVGIPVSVASATCYTQDLTVAAGGTRGRDGAQGCNLVHVYPDTVVHS 274 (330)
T ss_dssp EEEEECSSSSCEEEE--ETTEEEEECCCSSCEECTTSCTTCCCEESCSCEEEEEEECSSCEEEE
T ss_pred eEEEECCCCCcccce--ECCEEEEecCcceeccCCCCCCcceeccCCCCceEEEEEECCCeEEE
Confidence 999999999998653 2488999999887421 1357899999999987765
No 2
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=99.96 E-value=1.1e-27 Score=209.91 Aligned_cols=242 Identities=15% Similarity=0.154 Sum_probs=156.9
Q ss_pred CCCceEEEEEecCCcCCCCCC--------chhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHH
Q psy2930 9 SINNIKAIFIADTHLLGPFRG--------HWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVR 80 (293)
Q Consensus 9 ~~~~~ri~~iSD~H~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~ 80 (293)
+.+.|||+++||+|++..... .+... .....+.+.+.+++.+||+||++||+++.+...... ....++
T Consensus 2 ~~~~~~i~~isD~H~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~d~vi~~GD~~~~~~~~~~~-~~~~~~ 77 (322)
T 2nxf_A 2 EDPVFTFGLIADVQYADIEDGENYLRTRRRYYRG---SADLLRDAVLQWRRERVQCVVQLGDIIDGHNRRRDA-SDRALD 77 (322)
T ss_dssp -CCSEEEEEECCCCBCSSCCEECTTSSSEECTTH---HHHHHHHHHHHHHHTTCSEEEECSCCBCTHHHHTTC-HHHHHH
T ss_pred CCCceEEEEEeeccccccCcccccccchHHHHHH---HHHHHHHHHHHHHhcCCCEEEECCCccCCCCCcchH-HHHHHH
Confidence 456799999999999874321 11100 111223344445558999999999999976421111 112234
Q ss_pred HHHhhhcCCCCceEEEecCCCCCCCCCCCCchhHHHHHHHhC-----------------CCCcceEEe-CCEEEEEEece
Q psy2930 81 RFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFN-----------------SSMVKLLSI-KGSYFVLINSM 142 (293)
Q Consensus 81 ~~~~~~~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~-~~~~~i~lds~ 142 (293)
.+.+.+. ..++|+++++||||.+.. ....|.+.+. ...++.+.. ++++||++|+.
T Consensus 78 ~~~~~l~-~~~~p~~~v~GNHD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~ld~~ 150 (322)
T 2nxf_A 78 TVMAELD-ACSVDVHHVWGNHEFYNF------SRPSLLSSRLNSAQRTGTDTGSDLIGDDIYAYEFSPAPNFRFVLLDAY 150 (322)
T ss_dssp HHHHHHH-TTCSEEEECCCHHHHHHC------CHHHHHTSTTCCCC------CEECGGGTCCCEEEEEETTEEEEECCTT
T ss_pred HHHHHHH-hcCCcEEEecCCCCcccC------CHHHHhhhhCCcccccccccccccCCCCceEEEEecCCCEEEEEEcCc
Confidence 4444443 346899999999998411 0122332222 112577776 99999999997
Q ss_pred eccCCC---------------------------------------CCCCchhHHHHHHHHHHhhhcccCCCCCccccCCC
Q psy2930 143 ALEGDG---------------------------------------CFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGS 183 (293)
Q Consensus 143 ~~~~~~---------------------------------------~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 183 (293)
.+...+ ...+....+|++||++.|+.+.+ .
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~q~~wL~~~L~~~~~-----------~ 219 (322)
T 2nxf_A 151 DLSVIGREEESEKHTHSWRILTQHNHNLQDLNLPPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDH-----------K 219 (322)
T ss_dssp SBCSSSSCTTSHHHHHHHHHHHHHCCCTTCTTSCSCSSSGGGGCSTTCCBCCHHHHHHHHHHHHHHHH-----------H
T ss_pred eecccccCCCChhhHHHHHHHhhcCcccccccCccccccccccccccCCccCHHHHHHHHHHHHHHHh-----------c
Confidence 652110 00134568899999999987632 2
Q ss_pred CCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhc-CccEEEecCCCCCceeeccCCCeeE
Q psy2930 184 YSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYL-NPRLVIDGHTHNGCHKYHAYGKVHE 262 (293)
Q Consensus 184 ~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~-~~~lvl~GH~H~~~~~~~~~~~~~~ 262 (293)
+.++||++|+|++...... . ....+.+.+.++++++ +++++|+||+|....... .+++++
T Consensus 220 ~~~~iv~~H~p~~~~~~~~-----------~-------~~~~~~~~~~~ll~~~~~v~~~~~GH~H~~~~~~~-~~g~~~ 280 (322)
T 2nxf_A 220 QERVLIFSHLPVHPCAADP-----------I-------CLAWNHEAVLSVLRSHQSVLCFIAGHDHDGGRCTD-SSGAQH 280 (322)
T ss_dssp TCEEEEEESSCCCTTSSCG-----------G-------GSCTTHHHHHHHHHTCTTEEEEEECSCTTCEEEEC-TTSCEE
T ss_pred CCcEEEEEccCCCCCCCCc-----------c-------ccccCHHHHHHHHhcCCCeEEEEcCCcCCCCceec-cCCceE
Confidence 5678999999997543210 0 0112455778899988 799999999999987641 347899
Q ss_pred EeccceeccCCCCCceEEEEEecCCceee
Q psy2930 263 YTVPSFSWRNKNNPSFLMGYVVENSSGVN 291 (293)
Q Consensus 263 ~~~~s~~~~~~~~p~f~~~~~~~~~~~~~ 291 (293)
+++|++.-.....++|.+++++++++.++
T Consensus 281 i~~~~~~~~~~~~~~y~~v~~~~~~~~~~ 309 (322)
T 2nxf_A 281 ITLEGVIETPPHSHAFATAYLYEDRMVMK 309 (322)
T ss_dssp EECCCGGGCCTTSCEEEEEEECSSEEEEE
T ss_pred EEecchhhCCCCCCcEEEEEEECCeEEEE
Confidence 99988754334568999999999988765
No 3
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=99.95 E-value=1.6e-26 Score=198.40 Aligned_cols=229 Identities=17% Similarity=0.168 Sum_probs=148.6
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhc--CCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCC
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALH--QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPD 90 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (293)
|||+++||+|++......+- ... .....+++.+.+++. ++|+||++||+++.+. ..++ +.+.+.+. ..
T Consensus 1 mri~~iSD~H~~~~~~~~~g-~~~-~~~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~---~~~~----~~~~~~l~-~l 70 (274)
T 3d03_A 1 MLLAHISDTHFRSRGEKLYG-FID-VNAANADVVSQLNALRERPDAVVVSGDIVNCGR---PEEY----QVARQILG-SL 70 (274)
T ss_dssp CEEEEECCCCBCSTTCCBTT-TBC-HHHHHHHHHHHHHTCSSCCSEEEEESCCBSSCC---HHHH----HHHHHHHT-TC
T ss_pred CEEEEEecCCcCCCCccccc-ccC-HHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCC---HHHH----HHHHHHHH-hc
Confidence 79999999999754321110 000 111223344444444 6899999999999765 2233 33444443 34
Q ss_pred CceEEEecCCCCCCCCCCCCchhHHHHHH-Hh--CC---CCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHH
Q psy2930 91 GTELHVVPGNHDMGFHYRLHPYLNDRFSR-AF--NS---SMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISA 164 (293)
Q Consensus 91 ~~~~~~v~GNHD~~~~~~~~~~~~~~~~~-~~--~~---~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~ 164 (293)
++|+++++||||.... ..+.|.. ++ .. ..++.+..++++|+++|+..... ..+....+|++||++
T Consensus 71 ~~p~~~v~GNHD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ld~~~~~~---~~~~~~~~~~~wl~~ 141 (274)
T 3d03_A 71 NYPLYLIPGNHDDKAL------FLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGT---SKGWLTDETISWLEA 141 (274)
T ss_dssp SSCEEEECCTTSCHHH------HHHHHGGGSGGGCSCGGGCCEEECSSSSEEEECCCCCTTC---SSBCCCHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHH------HHHHhhhhhcCcccCCCceEEEEEeCCEEEEEEeCCCCCC---CCCeeCHHHHHHHHH
Confidence 6899999999998421 1122222 11 11 12567788999999999876432 233466789999999
Q ss_pred HhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhc-CccEEE
Q psy2930 165 KLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYL-NPRLVI 243 (293)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~-~~~lvl 243 (293)
.|+.. ++.++|+++|+|++..... ..+ .+...+...+.++++++ +++++|
T Consensus 142 ~l~~~-------------~~~~~iv~~H~p~~~~~~~---~~~-------------~~~~~~~~~l~~~l~~~~~v~~vl 192 (274)
T 3d03_A 142 QLFEG-------------GDKPATIFMHHPPLPLGNA---QMD-------------PIACENGHRLLALVERFPSLTRIF 192 (274)
T ss_dssp HHHHH-------------TTSCEEEEESSCSSCCSCT---TTG-------------GGSBTTTHHHHHHHHHCTTEEEEE
T ss_pred HHHhC-------------CCCCEEEEECCCCcccCCc---ccC-------------cccCcCHHHHHHHHHhCCCceEEE
Confidence 99864 4578999999999754321 010 01223345678899988 899999
Q ss_pred ecCCCCCceeeccCCCeeEEeccceecc------------CCCCCceEEEEEecCCceee
Q psy2930 244 DGHTHNGCHKYHAYGKVHEYTVPSFSWR------------NKNNPSFLMGYVVENSSGVN 291 (293)
Q Consensus 244 ~GH~H~~~~~~~~~~~~~~~~~~s~~~~------------~~~~p~f~~~~~~~~~~~~~ 291 (293)
+||+|...... .++++.++.|+.+.+ .+..|||.+++++++++++.
T Consensus 193 ~GH~H~~~~~~--~~g~~~~~~pg~~~~~~~~~~~~~~~~~~~~~gy~i~~i~~~~~~~~ 250 (274)
T 3d03_A 193 CGHNHSLTMTQ--YRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSY 250 (274)
T ss_dssp ECSSSSCEEEE--ETTEEEEECCCSSCBCCCCSSCCSCEEBCCCCEEEEEEEETTEEEEE
T ss_pred eCCCCCchhhe--ECCEEEEEcCCcceeeccCCCccccccccCCCceEEEEEeCCcEEEE
Confidence 99999998653 236777777766532 12468999999999877654
No 4
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=99.95 E-value=2.4e-26 Score=210.95 Aligned_cols=244 Identities=15% Similarity=0.215 Sum_probs=158.6
Q ss_pred CCCceEEEEEecCCcCCCCC---CchhHHH---------HhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHH
Q psy2930 9 SINNIKAIFIADTHLLGPFR---GHWFDKL---------RREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFD 76 (293)
Q Consensus 9 ~~~~~ri~~iSD~H~~~~~~---~~~~~~~---------~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~ 76 (293)
++++|||+++||+|++.... +...... .......+++.+.+++.+||+||++||+++.+.. ..+.
T Consensus 36 ~~~~~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~---~~~~ 112 (443)
T 2xmo_A 36 KDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGDLTNNGEK---TSHE 112 (443)
T ss_dssp SCCCEEEEEECCCCBCCGGGBCCCHHHHHHHHTSTTCCGGGHHHHHHHHHHHHHHHTCSEEEEESCCBSSCCH---HHHH
T ss_pred CCCCeEEEEEeCCCCCCccccccchhhhcccccccccccccHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCH---HHHH
Confidence 45679999999999975421 1111100 0012344555666667899999999999997752 2344
Q ss_pred HHHHHHHhhhcCCCCceEEEecCCCCCCCCCCC----------CchhHHHHHHHhCCC-------------CcceEEeCC
Q psy2930 77 NYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRL----------HPYLNDRFSRAFNSS-------------MVKLLSIKG 133 (293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~v~GNHD~~~~~~~----------~~~~~~~~~~~~~~~-------------~~~~~~~~~ 133 (293)
...+.+..+. ..++|+++++||||....... .......|.+.|+.. .+.....++
T Consensus 113 ~~~~~l~~l~--~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 190 (443)
T 2xmo_A 113 ELAKKLTQVE--KNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIYSDFGYEDAISSDEFSLSYLAAPSSK 190 (443)
T ss_dssp HHHHHHHHHH--HTTCEEEEECCTTTSSCTTCEEEETTEEEECCCCCHHHHHHHTCCCCCTTCSEECSSSSCEEECSBSS
T ss_pred HHHHHHHHHH--hCCCeEEEECCcCCCCCccccccCCcccccccccCHHHHHHHhhhcChhhhhccCCCCceEEEecCCC
Confidence 4344444432 247899999999998642110 011246677777731 122334789
Q ss_pred EEEEEEeceeccC-----CCCCCCchhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCC
Q psy2930 134 SYFVLINSMALEG-----DGCFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDS 208 (293)
Q Consensus 134 ~~~i~lds~~~~~-----~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~ 208 (293)
++|++||+..+.. +....+....+|++||++.|+.+.+ .+.++|+++|+|+....... .
T Consensus 191 ~~~i~Lds~~~~~~~~~~~~~~~g~~~~~ql~wL~~~L~~~~~-----------~~~~~Iv~~H~p~~~~~~~~---~-- 254 (443)
T 2xmo_A 191 VWLLMLDTAIYKTNMQQGNPTTEGGLTAGTLDWIKESSALAKK-----------NGAKLIPVLHHNLTDHNDVI---Q-- 254 (443)
T ss_dssp EEEEECCCBCCTTHHHHTSCCCCBCCCHHHHHHHHHHHHHHHH-----------TTCEEEEECSSBSSCSSCC-------
T ss_pred EEEEEeeCCCcCcccccCCCCcCCccCHHHHHHHHHHHHHHHH-----------cCCeEEEEECCCCccccccc---c--
Confidence 9999999987541 1122344667999999999987643 35678999999997543210 0
Q ss_pred chhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCCCceeec--cCC-CeeEEeccceeccCCCCCceEEEEEec
Q psy2930 209 APDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKYH--AYG-KVHEYTVPSFSWRNKNNPSFLMGYVVE 285 (293)
Q Consensus 209 ~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~~--~~~-~~~~~~~~s~~~~~~~~p~f~~~~~~~ 285 (293)
+.+...+...+.+++++++++++|+||+|....... ..| ++..++.+|++. .+++|.++++.+
T Consensus 255 -----------~~~~~~~~~~l~~ll~~~~v~lvl~GH~H~~~~~~~~~~~g~~~~~i~~gs~~~---~p~~y~il~i~~ 320 (443)
T 2xmo_A 255 -----------KGYTINYNQQVIDALTEGAMDFSLSGHIHTQNIRSAKSTDGKEITDIVTNALSV---FPHKYGNITYSA 320 (443)
T ss_dssp -----------CCSBCTTHHHHHHHHHHTTCCEEEECSSCSCEEEEEECTTSCEEEEEECCCTTS---TTCEEEEEEEET
T ss_pred -----------cccccccHHHHHHHHHHcCCeEEEECCcccCchhhcccCCCCceEEEEcCcccc---CCCCeEEEEEeC
Confidence 011222455778899999999999999999986432 122 367777777653 358999999999
Q ss_pred CC
Q psy2930 286 NS 287 (293)
Q Consensus 286 ~~ 287 (293)
++
T Consensus 321 ~~ 322 (443)
T 2xmo_A 321 KN 322 (443)
T ss_dssp TT
T ss_pred CC
Confidence 87
No 5
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=99.93 E-value=7e-26 Score=197.75 Aligned_cols=239 Identities=18% Similarity=0.195 Sum_probs=151.4
Q ss_pred CCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCc-c-CChhhHHHHHHHHHhhh
Q psy2930 9 SINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQ-Y-VGGEDFDNYVRRFYSLF 86 (293)
Q Consensus 9 ~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~-~-~~~~~~~~~~~~~~~~~ 86 (293)
++++|||+++||+|++.... +... ....+.+++.+.++..+||+||++||++.... . ..+.++ .+.+.+++
T Consensus 3 ~~~~~~~~~isD~h~~~~~~--~~~~--~~~~~~~~l~~~~~~~~~d~vv~~GD~~~~~g~~~~~~~~~---~~~~~~~~ 75 (313)
T 1ute_A 3 PTPILRFVAVGDWGGVPNAP--FHTA--REMANAKAIATTVKTLGADFILSLGDNFYFTGVHDAKDKRF---QETFEDVF 75 (313)
T ss_dssp CCCCEEEEEECSCCCCSSTT--SSCH--HHHHHHHHHHHHHHHHCCSEEEECSCCSTTTCCSSTTCTHH---HHHTTTTS
T ss_pred CCCceEEEEEcccCCCCCcc--ccCc--hHHHHHHHHHHHHHhcCCCEEEECCCccCcCCCCCcchHHH---HHHHHHHc
Confidence 35679999999999975422 1100 11235566667677789999999999976422 1 112223 33344433
Q ss_pred cC-CC-CceEEEecCCCCCCCCCCCCchhHHHHHH---HhC-CCCcceEEe------CCEEEEEEeceeccCCC------
Q psy2930 87 ST-PD-GTELHVVPGNHDMGFHYRLHPYLNDRFSR---AFN-SSMVKLLSI------KGSYFVLINSMALEGDG------ 148 (293)
Q Consensus 87 ~~-~~-~~~~~~v~GNHD~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~------~~~~~i~lds~~~~~~~------ 148 (293)
.. .. ++|+++++||||...... ....|.. .+. ...++.+.+ ++++|++||+..+.+..
T Consensus 76 ~~~~l~~~p~~~v~GNHD~~~~~~----~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~ 151 (313)
T 1ute_A 76 SDPSLRNVPWHVLAGNHDHLGNVS----AQIAYSKISKRWNFPSPYYRLRFKIPRSNVSVAIFMLDTVTLCGNSDDFVSQ 151 (313)
T ss_dssp CSGGGTTCCEEECCCHHHHHSCHH----HHHHGGGTSTTEECCSSSEEEEEECTTSSCEEEEEECCHHHHHCCGGGSTTC
T ss_pred CchhhcCCCEEEECCCCccCCCcc----ccccccccCCCccCcccceEEEEecCCCCceEEEEEEEChHHhCcCcccccc
Confidence 10 13 789999999999853210 0000110 111 122455665 48999999998764321
Q ss_pred ----CCCCchhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccc
Q psy2930 149 ----CFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWEC 224 (293)
Q Consensus 149 ----~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (293)
...+....+|++||++.|+.. +..++|+++|+|++..... ... ..
T Consensus 152 ~~~~~~~~~~~~~q~~wL~~~L~~~-------------~~~~~iv~~H~p~~~~~~~---~~~---------------~~ 200 (313)
T 1ute_A 152 QPERPRNLALARTQLAWIKKQLAAA-------------KEDYVLVAGHYPVWSIAEH---GPT---------------HC 200 (313)
T ss_dssp SCCSCSCHHHHHHHHHHHHHHHHHC-------------CCSEEEEECSSCSSCCSSS---CCC---------------HH
T ss_pred ccCCccccchHHHHHHHHHHHHHhC-------------CCCeEEEEECCCCccCCCC---CCc---------------HH
Confidence 112345789999999999875 4568899999999764321 000 00
Q ss_pred cCHHHHHHHHhhcCccEEEecCCCCCceeeccCCCeeEEeccceeccCC---------------------CCCceEEEEE
Q psy2930 225 ISKESTDMLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRNK---------------------NNPSFLMGYV 283 (293)
Q Consensus 225 l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~~---------------------~~p~f~~~~~ 283 (293)
+ .+.+.+++++++++++|+||+|....... .+++.+++++|.+.... ..+||.++++
T Consensus 201 ~-~~~l~~~l~~~~v~~~l~GH~H~~~~~~~-~~g~~~i~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gy~~l~v 278 (313)
T 1ute_A 201 L-VKQLLPLLTTHKVTAYLCGHDHNLQYLQD-ENGLGFVLSGAGNFMDPSKKHLRKVPNGYLRFHFGAENSLGGFAYVEI 278 (313)
T ss_dssp H-HHHTHHHHHHTTCSEEEECSSSSEEEEEC-TTCCEEEEECBSSCCCCCCTTGGGSCTTCEEEEECCTTSCCEEEEEEE
T ss_pred H-HHHHHHHHHHcCCcEEEECChhhhhhccC-CCCceEEEECCCcCcCccccccccCCCcccceeccCcCCCCceEEEEE
Confidence 0 13567788889999999999998766532 34788888887652110 1269999999
Q ss_pred ecCCceee
Q psy2930 284 VENSSGVN 291 (293)
Q Consensus 284 ~~~~~~~~ 291 (293)
++++++++
T Consensus 279 ~~~~~~~~ 286 (313)
T 1ute_A 279 TPKEMSVT 286 (313)
T ss_dssp CSSCEEEE
T ss_pred EcCEEEEE
Confidence 99887765
No 6
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}
Probab=99.93 E-value=2.7e-26 Score=202.30 Aligned_cols=231 Identities=16% Similarity=0.081 Sum_probs=150.6
Q ss_pred CceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCcc-CChhhHHHHHHHHHhhhcCC
Q psy2930 11 NNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQY-VGGEDFDNYVRRFYSLFSTP 89 (293)
Q Consensus 11 ~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~-~~~~~~~~~~~~~~~~~~~~ 89 (293)
..+||++++|+|.+.. . .....+++.+.+++.+||+||++||+++.|.. ..+..|.+.++.+.+.....
T Consensus 2 ~~l~f~~igD~g~g~~-----~-----q~~va~~m~~~~~~~~pd~vl~~GD~~y~G~~~~~d~~~~~~f~~~~~~~~~~ 71 (342)
T 3tgh_A 2 CQLRFASLGDWGKDTK-----G-----QILNAKYFKQFIKNERVTFIVSPGSNFIDGVKGLNDPAWKNLYEDVYSEEKGD 71 (342)
T ss_dssp CCEEEEECCSCBSCCH-----H-----HHHHHHHHHHHHHHTTCCEEEECSCSBTTCCCSTTCTHHHHHTTTTSCCGGGT
T ss_pred ceEEEEEEecCCCCCc-----h-----HHHHHHHHHHHHhhcCCCEEEECCCcccCCCCcCccHHHHHHHHHHhhhhhhh
Confidence 4699999999997421 1 12344567777788999999999999988652 22344554443333221013
Q ss_pred CCceEEEecCCCCCCCCCCCCchhHHHHHH--------------H---------hCCCCcceE----Ee---------C-
Q psy2930 90 DGTELHVVPGNHDMGFHYRLHPYLNDRFSR--------------A---------FNSSMVKLL----SI---------K- 132 (293)
Q Consensus 90 ~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~--------------~---------~~~~~~~~~----~~---------~- 132 (293)
.++|++.|+||||..... ...-.+.. . ..+..+|.+ .. +
T Consensus 72 ~~~P~~~vlGNHD~~~~~----~aq~~~~~~~~~~~~~~~~~~~~~~~~~~~rw~~P~~yY~~~~~f~~~~~~~~~~~g~ 147 (342)
T 3tgh_A 72 MYMPFFTVLGTRDWTGNY----NAQLLKGQGIYIEKNGETSIEKDADATNYPKWIMPNYWYHYFTHFTVSSGPSIVKTGH 147 (342)
T ss_dssp TCSEEEECCCHHHHTSCH----HHHHHHHHC---------------CCCSSCEEECSSSSEEEEEEEEEC---------C
T ss_pred hCCCEEEeCCCCccCCCc----hHhhhhhhcccccccccccccccccccCCCCccCCcceEEEEEEeeccccccccccCC
Confidence 689999999999986321 11111111 0 011124433 22 1
Q ss_pred ---CEEEEEEeceeccCCCCC---CCchhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCC
Q psy2930 133 ---GSYFVLINSMALEGDGCF---LCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGP 206 (293)
Q Consensus 133 ---~~~~i~lds~~~~~~~~~---~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~ 206 (293)
.++|++|||+.+.+.... ......+|++||++.|. ...++||++|+|++..... .
T Consensus 148 ~~~~v~fi~LDT~~l~~~~~~~~~~~~~~~~Ql~WLe~~L~---------------~~~~~IV~~HhP~~~~~~~----~ 208 (342)
T 3tgh_A 148 KDLAAAFIFIDTWVLSSNFPYKKIHEKAWNDLKSQLSVAKK---------------IADFIIVVGDQPIYSSGYS----R 208 (342)
T ss_dssp EEEEEEEEECCTTTTSTTCSCHHHHHHHHHHHHHHHHHHHH---------------HCSEEEEECSSCSSCSSTT----C
T ss_pred CCceEEEEEEeCcccccCCcccccchHHHHHHHHHHHHhhc---------------cCCcEEEEECCCCCCCCCC----C
Confidence 389999999877643211 01234689999999994 3468999999999875421 0
Q ss_pred CCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCCCceeeccCCCeeEEeccceeccCC-------------
Q psy2930 207 DSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRNK------------- 273 (293)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~~------------- 273 (293)
+.. .+ +..+..+|++++++++|+||+|.+..... +++.++++++.+....
T Consensus 209 ~~~--------------~l-~~~l~~ll~~~~VdlvlsGH~H~~~~~~~--~g~~~iv~Ga~g~~~~~~~~~~~~s~f~~ 271 (342)
T 3tgh_A 209 GSS--------------YL-AYYLLPLLKDAEVDLYISGHDNNMEVIED--NDMAHITCGSGSMSQGKSGMKNSKSLFFS 271 (342)
T ss_dssp CCH--------------HH-HHHTHHHHHHTTCCEEEECSSSSEEEEEE--TTEEEEEECCSSCCCCCCSSCCTTEEEEE
T ss_pred CcH--------------HH-HHHHHHHHHHcCCCEEEECCCcceeEEee--CCcEEEEeCccccccccCCCCCCcceeec
Confidence 100 01 24678899999999999999999987642 3688999988763321
Q ss_pred CCCceEEEEEecCCceee
Q psy2930 274 NNPSFLMGYVVENSSGVN 291 (293)
Q Consensus 274 ~~p~f~~~~~~~~~~~~~ 291 (293)
..+||.++++++++++++
T Consensus 272 ~~~Gf~~l~v~~~~l~~~ 289 (342)
T 3tgh_A 272 SDIGFCVHELSNNGIVTK 289 (342)
T ss_dssp CSSEEEEEEEETTEEEEE
T ss_pred CCCcEEEEEEECCEEEEE
Confidence 346999999999887765
No 7
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=99.88 E-value=2.7e-21 Score=176.40 Aligned_cols=195 Identities=13% Similarity=0.152 Sum_probs=125.8
Q ss_pred CCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHh-cCCCEEEEcCccCCCCcc--CChhhHHHHHHHHHh
Q psy2930 8 ESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL-HQPEHIFVLGDLLDEGQY--VGGEDFDNYVRRFYS 84 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pd~vi~~GDl~~~~~~--~~~~~~~~~~~~~~~ 84 (293)
.+..++||+++||+|.+. . ....+.++.+. .+||+||++||+++.... .....|..+.+.+..
T Consensus 122 ~~~~~~~f~~~gD~~~~~-----~---------~~~~l~~i~~~~~~~D~vl~~GD~~y~~~~~~~~~~~~~~~~~~l~~ 187 (426)
T 1xzw_A 122 GPDVPYVFGLIGDIGQTH-----D---------SNTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSER 187 (426)
T ss_dssp CTTCCEEEEEECSCTTBH-----H---------HHHHHHHHHHCTTCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEEeCCCCC-----c---------hHHHHHHHHhCCCCCCEEEeCCChhhcccCCcccchHHHHHHHHHHH
Confidence 356789999999999731 1 01223333333 399999999999975331 112345444333443
Q ss_pred hhcCCCCceEEEecCCCCCCCCCCC-CchhHHHHHHHhCCC---------CcceEEeCCEEEEEEeceeccCCCCCCCch
Q psy2930 85 LFSTPDGTELHVVPGNHDMGFHYRL-HPYLNDRFSRAFNSS---------MVKLLSIKGSYFVLINSMALEGDGCFLCKP 154 (293)
Q Consensus 85 ~~~~~~~~~~~~v~GNHD~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~i~lds~~~~~~~~~~~~~ 154 (293)
+. ..+|+++++||||....... .......|.+.|.-+ .++.+..++++|++||+.... ..
T Consensus 188 l~---~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~ys~~~g~~~~i~Ldt~~~~-------~~ 257 (426)
T 1xzw_A 188 SV---AYQPWIWTAGNHEIDYAPDIGEYQPFVPFTNRYPTPHEASGSGDPLWYAIKRASAHIIVLSSYSGF-------VK 257 (426)
T ss_dssp HH---TTSCEECCCCGGGCCCBGGGTBCSTTHHHHHHSCCCCGGGTCSSTTSEEEEETTEEEEECCTTSCC-------ST
T ss_pred HH---hcCCEEEeccccccccCCccccccCChhheEEEeCCcccCCCCCCCeEEEEECCEEEEEeeCcccC-------CC
Confidence 33 47899999999999642110 011234566665422 367889999999999985421 13
Q ss_pred hHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHH
Q psy2930 155 AQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLL 234 (293)
Q Consensus 155 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll 234 (293)
..+|++||++.|+..... ...++||++|+|++....... .+. ..+ ++.+.+++
T Consensus 258 ~~~Q~~WL~~~L~~~~~~----------~~~w~Iv~~H~P~~~~~~~~~--~~~--------------~~~-r~~l~~ll 310 (426)
T 1xzw_A 258 YSPQYKWFTSELEKVNRS----------ETPWLIVLVHAPLYNSYEAHY--MEG--------------EAM-RAIFEPYF 310 (426)
T ss_dssp TSHHHHHHHHHHHHCCTT----------TCCEEEEECSSCSSCCBSTTT--TTT--------------HHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhhhc----------CCCEEEEEeccCceeCCCccc--CCC--------------HHH-HHHHHHHH
Confidence 468999999999875310 234589999999976432110 000 011 34677899
Q ss_pred hhcCccEEEecCCCCCcee
Q psy2930 235 DYLNPRLVIDGHTHNGCHK 253 (293)
Q Consensus 235 ~~~~~~lvl~GH~H~~~~~ 253 (293)
.+++++++|+||+|.+...
T Consensus 311 ~~~~VdlvlsGH~H~~~r~ 329 (426)
T 1xzw_A 311 VYYKVDIVFSGHVHSYERS 329 (426)
T ss_dssp HHTTCSEEEECSSSSEEEE
T ss_pred HHhCCCEEEEcChhhheee
Confidence 9999999999999998764
No 8
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=99.87 E-value=1.7e-20 Score=156.34 Aligned_cols=204 Identities=12% Similarity=0.036 Sum_probs=119.7
Q ss_pred CCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCC
Q psy2930 10 INNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTP 89 (293)
Q Consensus 10 ~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (293)
..+|||+++||+|++.. ..+.+.+.+++.+||+||++||+++.+. ..+.+...++.+.+
T Consensus 3 ~~~mri~~iSD~H~~~~--------------~~~~~~~~~~~~~~D~vi~~GDl~~~~~--~~~~~~~~~~~l~~----- 61 (228)
T 1uf3_A 3 RTVRYILATSNPMGDLE--------------ALEKFVKLAPDTGADAIALIGNLMPKAA--KSRDYAAFFRILSE----- 61 (228)
T ss_dssp CCCCEEEEEECCTTCHH--------------HHHHHHTHHHHHTCSEEEEESCSSCTTC--CHHHHHHHHHHHGG-----
T ss_pred cceEEEEEEeeccCCHH--------------HHHHHHHHHhhcCCCEEEECCCCCCCCC--CHHHHHHHHHHHHh-----
Confidence 34689999999998421 1123444455569999999999999763 23334444444432
Q ss_pred CCceEEEecCCCCCCCCCCCCchhHHHHHHHh------CCC---CcceEEeC-CEEEEEEeceeccCCCCC---CCchhH
Q psy2930 90 DGTELHVVPGNHDMGFHYRLHPYLNDRFSRAF------NSS---MVKLLSIK-GSYFVLINSMALEGDGCF---LCKPAQ 156 (293)
Q Consensus 90 ~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~-~~~~i~lds~~~~~~~~~---~~~~~~ 156 (293)
.++|+++|+||||.... +.+...+ +.. ....+.++ +++|+++++......... ......
T Consensus 62 ~~~pv~~v~GNHD~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~ 133 (228)
T 1uf3_A 62 AHLPTAYVPGPQDAPIW--------EYLREAANVELVHPEMRNVHETFTFWRGPYLVAGVGGEIADEGEPEEHEALRYPA 133 (228)
T ss_dssp GCSCEEEECCTTSCSHH--------HHHHHHHHHHHHCTTEEECBTSEEEETTTEEEEEECSEEESSSCCBSSSSCEEEH
T ss_pred cCCcEEEECCCCCchhH--------HHHHhhhhhhccCcceEEcccceEeeCCCcEEecCCCCcCCCCccChhhcccchh
Confidence 35799999999998421 1122221 110 12345566 899999876442111000 000001
Q ss_pred HHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhh
Q psy2930 157 DRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDY 236 (293)
Q Consensus 157 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~ 236 (293)
...+++.+.|+.. +..+.|+++|+|++.... ...+...+.+++++
T Consensus 134 ~~~~~~~~~l~~~-------------~~~~~il~~H~p~~~~~~----------------------~~~~~~~~~~~~~~ 178 (228)
T 1uf3_A 134 WVAEYRLKALWEL-------------KDYPKIFLFHTMPYHKGL----------------------NEQGSHEVAHLIKT 178 (228)
T ss_dssp HHHHHHHGGGGGS-------------CSCCEEEEESSCBCBTTT----------------------BTTSBHHHHHHHHH
T ss_pred hhHHHHHHHHHhC-------------CCCCeEEEEccCcccCCc----------------------cccCHHHHHHHHHH
Confidence 1112223333322 345889999999864311 01112356678888
Q ss_pred cCccEEEecCCCCCceeeccCCCeeEEeccceeccCCCCCceEEEEEec
Q psy2930 237 LNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRNKNNPSFLMGYVVE 285 (293)
Q Consensus 237 ~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~~~~p~f~~~~~~~ 285 (293)
.+++++++||+| .... ..++...++.+|++ .++|.++++++
T Consensus 179 ~~~~~~~~GH~H-~~~~--~~~~~~~in~Gs~~-----~~~~~i~~~~~ 219 (228)
T 1uf3_A 179 HNPLLVLVAGKG-QKHE--MLGASWVVVPGDLS-----EGEYSLLDLRA 219 (228)
T ss_dssp HCCSEEEECCSS-CEEE--EETTEEEEECCBGG-----GTEEEEEETTT
T ss_pred hCCCEEEEcccc-cCcc--ccCCceEEEecccC-----CCceEEEEecc
Confidence 899999999999 3332 22467777777765 46899998865
No 9
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=99.87 E-value=1.1e-20 Score=160.79 Aligned_cols=219 Identities=13% Similarity=0.102 Sum_probs=123.3
Q ss_pred CceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCCh-------------hhH--
Q psy2930 11 NNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGG-------------EDF-- 75 (293)
Q Consensus 11 ~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~-------------~~~-- 75 (293)
.+|||+++||+|++.. .+ +.+.+.++..+||+||++||+++.+....+ +++
T Consensus 4 ~~mri~~iSDlH~~~~-------~~-------~~~l~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~ 69 (260)
T 2yvt_A 4 MPRKVLAIKNFKERFD-------LL-------PKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHE 69 (260)
T ss_dssp CCCEEEEEECCTTCGG-------GH-------HHHHHHHHHHCCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHH
T ss_pred ceEEEEEEeecCCChH-------HH-------HHHHHHHHhcCCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhH
Confidence 4699999999999432 11 223444556799999999999997642100 000
Q ss_pred -----HHHHHHHHhhhcCCCCceEEEecCCCCCCCCCCCCchhHHHHHHHhCCC---------Ccce-EEeCCEEEEEEe
Q psy2930 76 -----DNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSS---------MVKL-LSIKGSYFVLIN 140 (293)
Q Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~i~ld 140 (293)
...+..+.+.+. ..++|+++|+||||... ...+.+.+... .... +.+++++|++++
T Consensus 70 ~~~~~~~~~~~~l~~l~-~~~~pv~~v~GNHD~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~g~~ 140 (260)
T 2yvt_A 70 NEHYIIETLDKFFREIG-ELGVKTFVVPGKNDAPL--------KIFLRAAYEAETAYPNIRVLHEGFAGWRGEFEVIGFG 140 (260)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCSEEEEECCTTSCCH--------HHHHHHHHHTTTTCTTEEECSSEEEEETTTEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHH-hcCCcEEEEcCCCCchh--------hhhHHHHhhhccCCcceEEecCcceEEECCEEEEecC
Confidence 011233333332 34689999999999742 11111121111 1234 778899999997
Q ss_pred ceeccCCCCCCCchh--HHHH--HHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcc
Q psy2930 141 SMALEGDGCFLCKPA--QDRI--SLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRK 216 (293)
Q Consensus 141 s~~~~~~~~~~~~~~--~~~l--~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~ 216 (293)
+..... ........ ..++ +|| +.++.. +..+.|+++|+|++....... + .
T Consensus 141 ~~~~~~-~~~~~~~~~~~~~~~~~~l-~~l~~~-------------~~~~~Il~~H~pp~~~~~d~~-~-~--------- 194 (260)
T 2yvt_A 141 GLLTEH-EFEEDFVLKYPRWYVEYIL-KFVNEL-------------KPRRLVTIFYTPPIGEFVDRT-P-E--------- 194 (260)
T ss_dssp SEEESS-CCBSSSSCEEEHHHHHHHG-GGGGGS-------------CCCEEEEEESSCCSCSSTTCB-T-T---------
T ss_pred CCcCCC-CcCHHHHhhcchhhHHHHH-HHHHhc-------------CCCCEEEEECCCccccccccC-c-c---------
Confidence 654211 11000000 0111 233 222221 345679999999864311100 0 0
Q ss_pred cccccccccCHHHHHHHHhhcCccEEEecCCCCCceeeccCCCeeEEeccceeccCCCCCceEEEEEecCCcee
Q psy2930 217 KFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRNKNNPSFLMGYVVENSSGV 290 (293)
Q Consensus 217 ~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~~~~p~f~~~~~~~~~~~~ 290 (293)
.+...+...+.+++++++++++++||+| .... ..++...++.+|++. .+|.+++++++.+++
T Consensus 195 ----~~~~~~~~~l~~~~~~~~~~~vl~GH~H-~~~~--~~~~~~~in~Gs~~~-----g~~~ii~~~~~~~~~ 256 (260)
T 2yvt_A 195 ----DPKHHGSAVVNTIIKSLNPEVAIVGHVG-KGHE--LVGNTIVVNPGEFEE-----GRYAFLDLTQHKIKL 256 (260)
T ss_dssp ----BSCCCSCHHHHHHHHHHCCSEEEECSSC-CEEE--EETTEEEEECCBGGG-----TEEEEEETTTTEEEE
T ss_pred ----cccccCcHHHHHHHHHhCCCEEEECCcc-CCcE--EeCCEEEEeCCCCCC-----CceEEEEEcCCEEEe
Confidence 0012233466788888899999999999 4332 224667778777653 289999998765544
No 10
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Probab=99.87 E-value=3.8e-21 Score=175.32 Aligned_cols=195 Identities=14% Similarity=0.164 Sum_probs=123.1
Q ss_pred CCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHh-cCCCEEEEcCccCCCCcc--CChhhHHHHHHHHHh
Q psy2930 8 ESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL-HQPEHIFVLGDLLDEGQY--VGGEDFDNYVRRFYS 84 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pd~vi~~GDl~~~~~~--~~~~~~~~~~~~~~~ 84 (293)
.+..++||+++||+|.+.. . .+.+..+.+. .+||+||++||+++.... .....|..+.+.+..
T Consensus 115 ~~~~~~~f~~igD~~~~~~-------~-------~~~l~~~~~~~~~~D~vl~~GDl~y~~~~~~~~~~~~~~~~~~l~~ 180 (424)
T 2qfp_A 115 GLDVPYTFGLIGDLGQSFD-------S-------NTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTER 180 (424)
T ss_dssp CTTCCEEEEEECSCTTBHH-------H-------HHHHHHHHTCSSCCCEEEECSCCSCGGGSGGGCTHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEEeCCCCCC-------h-------HHHHHHHHhCCCCCCEEEEcCccccccccccccchHHHHHHHHHHH
Confidence 3457899999999998421 0 0122222232 289999999999986431 112334443333333
Q ss_pred hhcCCCCceEEEecCCCCCCCCCCCC-chhHHHHHHHhCCC---------CcceEEeCCEEEEEEeceeccCCCCCCCch
Q psy2930 85 LFSTPDGTELHVVPGNHDMGFHYRLH-PYLNDRFSRAFNSS---------MVKLLSIKGSYFVLINSMALEGDGCFLCKP 154 (293)
Q Consensus 85 ~~~~~~~~~~~~v~GNHD~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~i~lds~~~~~~~~~~~~~ 154 (293)
+. ..+|+++++||||........ ......|...|..+ .++.+..++++|++||+....+ .
T Consensus 181 ~~---~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ys~~~g~~~~i~Ldt~~~~~-------~ 250 (424)
T 2qfp_A 181 SV---AYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYG-------R 250 (424)
T ss_dssp HH---TTSCEEECCCHHHHCCBGGGTBCSTTHHHHHHCCCCGGGGTCSSTTSEEEEETTEEEEECCTTSCCS-------T
T ss_pred HH---hcCCeEeecCCcccccCCcccccccchhhhhhccCCccccCCCCCcEEEEEECCEEEEEecCCccCC-------C
Confidence 33 468999999999986421110 11134555555422 3678999999999999864211 2
Q ss_pred hHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHH
Q psy2930 155 AQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLL 234 (293)
Q Consensus 155 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll 234 (293)
..+|++||++.|+..... ...++|+++|+|++....... .+. . .+ +..+.+++
T Consensus 251 ~~~Q~~WL~~~L~~~~~~----------~~~~~Iv~~H~P~~~~~~~~~--~~~-------------~-~~-r~~l~~ll 303 (424)
T 2qfp_A 251 GTPQYTWLKKELRKVKRS----------ETPWLIVLMHSPLYNSYNHHF--MEG-------------E-AM-RTKFEAWF 303 (424)
T ss_dssp TSHHHHHHHHHHHHCCTT----------TCCEEEEECSSCSSCCBSTTT--TTT-------------H-HH-HHHHHHHH
T ss_pred cHHHHHHHHHHHhhhccc----------CCCEEEEEeCcCceecCcccc--ccc-------------H-HH-HHHHHHHH
Confidence 247999999999875310 234689999999976432100 000 0 11 23577899
Q ss_pred hhcCccEEEecCCCCCcee
Q psy2930 235 DYLNPRLVIDGHTHNGCHK 253 (293)
Q Consensus 235 ~~~~~~lvl~GH~H~~~~~ 253 (293)
++++++++|+||+|.+...
T Consensus 304 ~~~~VdlvlsGH~H~y~r~ 322 (424)
T 2qfp_A 304 VKYKVDVVFAGHVHAYERS 322 (424)
T ss_dssp HHTTCSEEEECSSSSEEEE
T ss_pred HHhCCcEEEECChhhhhee
Confidence 9999999999999997654
No 11
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=99.83 E-value=3e-19 Score=160.77 Aligned_cols=232 Identities=13% Similarity=0.121 Sum_probs=122.5
Q ss_pred CCCCCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHh
Q psy2930 5 ASPESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYS 84 (293)
Q Consensus 5 ~~~~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~ 84 (293)
+|+...++|||+++||+|++....+. ..+........+.+.+.+...+||+||++||+++.+... ...+....+.+.+
T Consensus 13 ~~~~~~~~mrilhiSD~Hlg~~~~~~-~~r~~~~~~~l~~~v~~~~~~~~D~VliaGDl~d~~~p~-~~~~~~~~~~l~~ 90 (386)
T 3av0_A 13 GLVPRGSHMMFVHIADNHLGYRQYNL-DDREKDIYDSFKLCIKKILEIKPDVVLHSGDLFNDLRPP-VKALRIAMQAFKK 90 (386)
T ss_dssp -----CCCCEEEEECCCCBTCCGGGC-HHHHHHHHHHHHHHHHHHHTTCCSEEEECSCSBSSSSCC-HHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEEccCCCCccccCc-chhhHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCC-HHHHHHHHHHHHH
Confidence 35567788999999999997542211 111111112334455555667999999999999976532 3334444444544
Q ss_pred hhcCCCCceEEEecCCCCCCCCCCCCchhHHHHHHH---hCCCCcceEEe--CCEEEEEEeceeccCCCCCCCchhHHHH
Q psy2930 85 LFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRA---FNSSMVKLLSI--KGSYFVLINSMALEGDGCFLCKPAQDRI 159 (293)
Q Consensus 85 ~~~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~i~lds~~~~~~~~~~~~~~~~~l 159 (293)
+. ..++|+++|+||||......... ....+... +... .+... +++.+++++... ........+++
T Consensus 91 L~--~~~~pv~~v~GNHD~~~~~~~~~-~~~~l~~~v~~l~~~--~v~~~~~~~v~i~gl~~~~-----~~~~~~~~~~l 160 (386)
T 3av0_A 91 LH--ENNIKVYIVAGNHEMPRRLGEES-PLALLKDYVKILDGK--DVINVNGEEIFICGTYYHK-----KSKREEMLDKL 160 (386)
T ss_dssp HH--HTTCEEEECCCGGGSCSSTTSCC-GGGGGTTTCEECSEE--EEEEETTEEEEEEEECCCC-----STTHHHHHHHH
T ss_pred HH--hcCCcEEEEcCCCCCCccccccC-HHHHHHHHeEEcCCC--cEEEeCCCCEEEEeCCCCC-----HHHHHHHHHHH
Confidence 43 24689999999999854221100 01111111 1111 11111 345666664321 01001112333
Q ss_pred HHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCc
Q psy2930 160 SLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNP 239 (293)
Q Consensus 160 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~ 239 (293)
.++...+. .+.+.|+++|.|+...... . + .+.... +. ++
T Consensus 161 ~~l~~~~~---------------~~~~~Ill~H~~~~~~~~~---~----------------~-~~~~~~----l~--~~ 199 (386)
T 3av0_A 161 KNFESEAK---------------NYKKKILMLHQGINPYIPL---D----------------Y-ELEHFD----LP--KF 199 (386)
T ss_dssp HHHHHHHH---------------TCSSEEEEECCCCTTTSSS---S----------------C-SSCGGG----SC--CC
T ss_pred HHhhhhcc---------------cCCCEEEEECcCccccCCC---C----------------c-ccCHHH----hh--hC
Confidence 33333222 4568899999998432110 0 0 011011 11 38
Q ss_pred cEEEecCCCCCceeeccCCCeeEEeccceeccC-C-------CCCceEEEEEec---CCceee
Q psy2930 240 RLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRN-K-------NNPSFLMGYVVE---NSSGVN 291 (293)
Q Consensus 240 ~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~-~-------~~p~f~~~~~~~---~~~~~~ 291 (293)
+++++||+|.+... ..++...+..+|..... + ..+||.++++.+ +..+++
T Consensus 200 d~v~~GH~H~~~~~--~~~~~~i~ypGS~~~~~~~e~~~~~~~~kg~~lv~i~~~~~~~~~v~ 260 (386)
T 3av0_A 200 SYYALGHIHKRILE--RFNDGILAYSGSTEIIYRNEYEDYKKEGKGFYLVDFSGNDLDISDIE 260 (386)
T ss_dssp SEEEECSCCSCEEE--ECSSSEEEECCCSSCCSGGGTHHHHHHCSEEEEEECCSSSCCGGGEE
T ss_pred CeEEccCCCCCccc--cCCCceEEECCcccccCcchhccccCCCCEEEEEEEecCcCCCceEE
Confidence 99999999998532 22356677778775322 1 357999999987 444443
No 12
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=99.82 E-value=4.6e-19 Score=156.70 Aligned_cols=241 Identities=14% Similarity=0.045 Sum_probs=125.6
Q ss_pred CCCCceEEEEEecCCcCC----CCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCc-cCCCCccCChhhHHHHHHHH
Q psy2930 8 ESINNIKAIFIADTHLLG----PFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGD-LLDEGQYVGGEDFDNYVRRF 82 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GD-l~~~~~~~~~~~~~~~~~~~ 82 (293)
.+.+.|||+++||+|+|. ...+. .+........+.+.+.+++.+||+||++|| +++.+... .+....+.+.+
T Consensus 14 ~~~~~mrilh~SD~HlG~~~~~~~~~~--~r~~~~~~~l~~lv~~~~~~~~D~vliaGD~l~d~~~~~-~~~~~~~~~~l 90 (336)
T 2q8u_A 14 INLKELKILHTSDWHLGVTSWTSSRPV--DRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNPS-VVALHDLLDYL 90 (336)
T ss_dssp TTCCEEEEEEEECCCBTCEECTTTCCE--ECHHHHHHHHHHHHHHHHHHTCSEEEEESCSBSCSSCCC-HHHHHHHHHHH
T ss_pred eecCceEEEEECcccCCCCccccccCc--ChhHHHHHHHHHHHHHHHHhCCCEEEECCccccCCCCCC-HHHHHHHHHHH
Confidence 566789999999999983 21111 011111234455666677789999999999 99876532 22233333444
Q ss_pred HhhhcCCCCceEEEecCCCCCCCCCCCCchhHHHHHHHhCCC-----Ccce-----EEeCCEEEEEEeceeccCCCCCCC
Q psy2930 83 YSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSS-----MVKL-----LSIKGSYFVLINSMALEGDGCFLC 152 (293)
Q Consensus 83 ~~~~~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~~i~lds~~~~~~~~~~~ 152 (293)
.++. .. +|+++++||||... ......+....+.. .... +..+++.|++++............
T Consensus 91 ~~L~--~~-~pv~~i~GNHD~~~-----~~~~~~~l~~~g~nv~v~~~~~~~~~~~~~~~~v~i~glp~~~~~~~~~~~~ 162 (336)
T 2q8u_A 91 KRMM--RT-APVVVLPGNHDWKG-----LKLFGNFVTSISSDITFVMSFEPVDVEAKRGQKVRILPFPYPDESEALRKNE 162 (336)
T ss_dssp HHHH--HH-SCEEECCC-----------CHHHHHHHHHHCSSEEECCSSSCEEEECTTSCEEEEEEECCC-------CCS
T ss_pred HHHH--hc-CCEEEECCCCCccc-----cccHHHHHHhcCCEEEEEecccccCceEEeCCCEEEEECCCCCHHHHHHHhh
Confidence 4433 12 69999999999853 11122232222311 0111 112456777774322100001112
Q ss_pred chhHHHHHHHHHHhhhcc-cCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHH
Q psy2930 153 KPAQDRISLISAKLKCCR-KDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTD 231 (293)
Q Consensus 153 ~~~~~~l~~l~~~l~~~~-~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (293)
....++++|+.+.+.... . ++.+.|+++|.|+...... .... . +. . ..+..
T Consensus 163 ~~~~~~~~~~~~~l~~~~~~-----------~~~~~Ill~H~~~~~~~~~--~~~~-------~--~~-~-~~v~~---- 214 (336)
T 2q8u_A 163 GDFRFFLESRLNKLYEEALK-----------KEDFAIFMGHFTVEGLAGY--AGIE-------Q--GR-E-IIINR---- 214 (336)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-----------CSSEEEEEEESEETTCC-------------------C-C-CEECG----
T ss_pred HHHHHHHHHHHHHHHHhccC-----------CCCCEEEEECccccCCCCC--CCcc-------c--hh-h-cccCH----
Confidence 334567777777665421 1 4567899999998532210 0000 0 00 0 00111
Q ss_pred HHHhhcCccEEEecCCCCCceeeccCCCeeEEecccee---ccC-CCCCceEEEEEecCC-ceee
Q psy2930 232 MLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFS---WRN-KNNPSFLMGYVVENS-SGVN 291 (293)
Q Consensus 232 ~ll~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~---~~~-~~~p~f~~~~~~~~~-~~~~ 291 (293)
. +...+++++++||+|..+.... +...+.++|.. +.. +..+||.++++++++ .+++
T Consensus 215 ~-l~~~~~d~v~~GH~H~~~~~~~---~~~i~y~GS~~~~s~~e~~~~~~~~lv~i~~~~~~~v~ 275 (336)
T 2q8u_A 215 A-LIPSVVDYAALGHIHSFREIQK---QPLTIYPGSLIRIDFGEEADEKGAVFVELKRGEPPRYE 275 (336)
T ss_dssp G-GSCTTSSEEEEESCSSCEEEEE---TTEEEECCCSSCCSGGGTTCCCEEEEEEEETTSCCEEE
T ss_pred H-HccccCCEEEEccccCceEeCC---CccEEECCCCcCCCccccCCCCEEEEEEEeCCCccEEE
Confidence 1 2234799999999999987531 33556666653 222 236899999999764 4443
No 13
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=99.80 E-value=2.5e-17 Score=141.40 Aligned_cols=219 Identities=14% Similarity=0.130 Sum_probs=123.9
Q ss_pred CCCCCCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHH
Q psy2930 4 PASPESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFY 83 (293)
Q Consensus 4 ~~~~~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~ 83 (293)
|.+++....|||+++||+|...... +-.++|+||++||+++.+. .+++....+.+.
T Consensus 51 ~~~p~~~~~mri~~iSD~H~~~~~l---------------------~i~~~D~vi~aGDl~~~g~---~~e~~~~~~~L~ 106 (296)
T 3rl5_A 51 YDTPKPAGHTRFVCISDTRSRTDGI---------------------QMPYGDILLHTGDFTELGL---PSEVKKFNDWLG 106 (296)
T ss_dssp TTSCCCTTEEEEEEEBCCTTCCTTC---------------------CCCSCSEEEECSCCSSSCC---HHHHHHHHHHHH
T ss_pred CCCCCCCCCeEEEEEeeCCCCcchh---------------------ccCCCCEEEECCcccCCCC---HHHHHHHHHHHH
Confidence 4455777889999999999854311 1247999999999999875 334444444444
Q ss_pred hhhcCCCCceEEEecCCCCCCCCCCCCc------hh---------HHHH---HHHhCCC---CcceEEeCCEEEEEEece
Q psy2930 84 SLFSTPDGTELHVVPGNHDMGFHYRLHP------YL---------NDRF---SRAFNSS---MVKLLSIKGSYFVLINSM 142 (293)
Q Consensus 84 ~~~~~~~~~~~~~v~GNHD~~~~~~~~~------~~---------~~~~---~~~~~~~---~~~~~~~~~~~~i~lds~ 142 (293)
++ ...++++|+||||.+.+..... .. .+.+ +..+... ......++|++|++....
T Consensus 107 ~l----~~~~v~~V~GNHD~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~i~Gl~i~Gsp~t 182 (296)
T 3rl5_A 107 NL----PYEYKIVIAGNHELTFDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGFRIYGAPWT 182 (296)
T ss_dssp TS----CCSEEEECCCTTCGGGCHHHHHHHTTSCGGGSHHHHTCCHHHHTTTGGGCTTSEECSSEEEEETTEEEEEECCB
T ss_pred hC----CCCeEEEEcCCcccccchhhhhhhhcccccccccccccccchhhhHhhhcCCeEEecCCcEEECCEEEEEecCC
Confidence 32 2346899999999965311000 00 0000 0001111 135677899999885433
Q ss_pred eccCCCCCCCchhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccc
Q psy2930 143 ALEGDGCFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRW 222 (293)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (293)
-..+. +.+ +....+++.+..... +....|+++|.|++...... . .. .
T Consensus 183 P~~~~-~~f---~~~~~~~~~~~~~~i-------------p~~~dILvTH~PP~g~~D~~-------~--~~-------~ 229 (296)
T 3rl5_A 183 PWFNG-WGF---NLPRGQSLLDKWNLI-------------PEGTDILMTHGPPLGFRDWV-------P--KE-------L 229 (296)
T ss_dssp CC--C-CTT---BCCTTHHHHHHHTTS-------------CTTCSEEEESSCBTTSSCEE-------G--GG-------T
T ss_pred CCCCC-cCC---CcchHHHHHHHHhhC-------------CCCCeEEEECCCcccccccc-------c--cc-------c
Confidence 22221 111 111122222222211 56678999999997643210 0 00 0
Q ss_pred cccCHHHHHHHH-hhcCccEEEecCCCCCceeeccCCCeeEEeccceeccCCCCCceEEEEEe
Q psy2930 223 ECISKESTDMLL-DYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRNKNNPSFLMGYVV 284 (293)
Q Consensus 223 ~~l~~~~~~~ll-~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~~~~p~f~~~~~~ 284 (293)
..+....+.+.+ ++.+++++++||+|...... ..+++.+++.+|+.....+...=.++++.
T Consensus 230 ~~~G~~~L~~~i~~~~~p~l~v~GH~H~~~~~~-~~g~t~vvNpGs~~~~~~~~n~p~v~dl~ 291 (296)
T 3rl5_A 230 QRVGCVELLNTVQRRVRPKLHVFGGIHEGYGTM-TDGYTTYINASTCTVSFQPTNPPIIFDLP 291 (296)
T ss_dssp EECSBHHHHHHHHHTTCCSEEEECSCGGGCEEE-ECSSCEEEECBCSCTTSCCCSCCEEEEEE
T ss_pred CcCChHHHHHHHHHhcCCCEEEECCccCCCceE-EECCEEEEECCcCCcCcCCCCCCEEEEec
Confidence 123333455555 68899999999999986532 34578899999988765421112445544
No 14
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=99.74 E-value=1.2e-16 Score=143.30 Aligned_cols=233 Identities=14% Similarity=0.099 Sum_probs=121.2
Q ss_pred eEEEEEecCCcCCC----CCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccC-CCCccCChhhHHHHHHHHHhhhc
Q psy2930 13 IKAIFIADTHLLGP----FRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLL-DEGQYVGGEDFDNYVRRFYSLFS 87 (293)
Q Consensus 13 ~ri~~iSD~H~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~-~~~~~~~~~~~~~~~~~~~~~~~ 87 (293)
|||+|+||+|+|.. ..+.. ....-....+.+.+.+...+||+||++||++ +.+. .....+..+.+.+..+.
T Consensus 1 mrilh~SD~Hlg~~~~~~~~g~~--~~~~~~~~l~~l~~~~~~~~~D~vliaGDl~hd~~~-~~~~~~~~~~~~l~~l~- 76 (379)
T 3tho_B 1 MKILHTSDWHLGVTSWTSSRPVD--RREELKKALDKVVEEAEKREVDLILLTGDLLHSRNN-PSVVALHDLLDYLKRMM- 76 (379)
T ss_dssp CEEEEECCCCBTCEECSSSSCEE--CHHHHHHHHHHHHHHHHHHTCSEEEECSCCBSCSSS-CCHHHHHHHHHHHHHHH-
T ss_pred CeEEEEcccCCCCCccccccCcC--hhHHHHHHHHHHHHHHHhcCCCEEEECCCccccCCC-CCHHHHHHHHHHHHHHH-
Confidence 79999999999876 22211 1111223445566666778999999999999 5433 23333444344444443
Q ss_pred CCCCceEEEecCCCCCCCCCCCCchhHHHHHHHhCCC-------CcceEE-eCC--EEEEEEeceeccCCCCCCCchhHH
Q psy2930 88 TPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSS-------MVKLLS-IKG--SYFVLINSMALEGDGCFLCKPAQD 157 (293)
Q Consensus 88 ~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~--~~~i~lds~~~~~~~~~~~~~~~~ 157 (293)
.. +|+++|+||||... ......+...+... ....+. .+| +.++++.- .............
T Consensus 77 -~~-~~v~~i~GNHD~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~G~~v~i~glp~---~~~~~~~~~~~~~ 146 (379)
T 3tho_B 77 -RT-APVVVLPGNQDWKG-----LKLFGNFVTSISSDITFVMSFEPVDVEAKRGQKVRILPFPY---PDESEALRKNEGD 146 (379)
T ss_dssp -HH-SCEEECCCTTSCTT-----HHHHHHHHHTTCSSEEECCSSCCEEEECTTCCEEEEEEECC---CCCC----CHHHH
T ss_pred -hC-CCEEEEcCCCcccc-----CccccccccccCCcceeecccceEEEEcCCCCEEEEEECCC---CCHHHHhhhhccc
Confidence 23 79999999999531 11122222212221 011121 123 55555521 1111111123445
Q ss_pred HHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhc
Q psy2930 158 RISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYL 237 (293)
Q Consensus 158 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~ 237 (293)
..+|+.+.++..... ...++.+.|+++|.++..... .+..... +. ..+... ++ ..
T Consensus 147 ~~~~l~~~l~~~~~~-------~~~~~~~~I~l~H~~v~g~~~-~~~se~~---------~~---~~v~~~----~~-~~ 201 (379)
T 3tho_B 147 FRFFLESRLNKLYEE-------ALKKEDFAIFMGHFTVEGLAG-YAGIEQG---------RE---IIINRA----LI-PS 201 (379)
T ss_dssp HHHHHHHHHHHHHHH-------HHTCSSEEEEEEESCBSCCCC-----------------CS---CCBCGG----GS-CT
T ss_pred hHHHHHHHHHHHHHH-------hcCCCCCeEEEEeccccCCcc-CCCCccc---------cc---cccCHH----Hc-Cc
Confidence 667777666521100 000456789999999853221 0000000 00 011111 11 23
Q ss_pred CccEEEecCCCCCceeeccCCCeeEEecccee---ccC-CCCCceEEEEEecCC
Q psy2930 238 NPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFS---WRN-KNNPSFLMGYVVENS 287 (293)
Q Consensus 238 ~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~---~~~-~~~p~f~~~~~~~~~ 287 (293)
+++++++||+|.+.... . +...+..+|.. +.. +..+||.++++.+++
T Consensus 202 ~~dyvalGH~H~~q~~~-~--~~~i~y~GS~~~~~f~E~~~~k~~~lv~~~~~~ 252 (379)
T 3tho_B 202 VVDYAALGHIHSFREIQ-K--QPLTIYPGSLIRIDFGEEADEKGAVFVELKRGE 252 (379)
T ss_dssp TSSEEEEESCSSCEEEE-E--TTEEEECCCSSCCSGGGSSSCCEEEEEECCSSS
T ss_pred CCCEEEcccccCCeEeC-C--CCcEEecCCCCCCCcccccCCCEEEEEEEcCCC
Confidence 79999999999996542 1 23566666652 222 236899999998765
No 15
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=99.73 E-value=3.9e-17 Score=132.86 Aligned_cols=61 Identities=18% Similarity=0.087 Sum_probs=46.5
Q ss_pred HHHHHHhhcCccEEEecCCCCCceeeccCCCeeEEeccceeccC-----CCCCceEEEEEecCCceee
Q psy2930 229 STDMLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRN-----KNNPSFLMGYVVENSSGVN 291 (293)
Q Consensus 229 ~~~~ll~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~-----~~~p~f~~~~~~~~~~~~~ 291 (293)
.+.++++..+++++++||+|...... .+++..++.+|++... ...++|.+++++++++++.
T Consensus 108 ~l~~~~~~~~~d~vi~GHtH~~~~~~--~~~~~~inpGS~~~~~~~~~~~~~~~y~il~~~~~~~~~~ 173 (192)
T 1z2w_A 108 SLALLQRQFDVDILISGHTHKFEAFE--HENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTY 173 (192)
T ss_dssp HHHHHHHHHSSSEEECCSSCCCEEEE--ETTEEEEECCCTTCCCCSSCSCCCCEEEEEEEETTEEEEE
T ss_pred HHHHHHHhcCCCEEEECCcCcCccEe--ECCEEEEECCcccccCCCCCcCCCCcEEEEEEECCEEEEE
Confidence 45566666789999999999997643 3478899999986522 2468999999998776654
No 16
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=99.71 E-value=4.5e-17 Score=134.85 Aligned_cols=168 Identities=14% Similarity=0.093 Sum_probs=104.0
Q ss_pred ceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCC
Q psy2930 12 NIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDG 91 (293)
Q Consensus 12 ~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (293)
.|||+++||+|++.... .+. +.+.+.++..++|+|+++||+++ .+.++.++++ +
T Consensus 25 ~m~i~~iSD~H~~~~~~-~l~----------~~l~~~~~~~~~D~vi~~GDl~~----------~~~l~~l~~~-----~ 78 (215)
T 2a22_A 25 GDLVLLIGDLKIPYGAK-ELP----------SNFRELLATDKINYVLCTGNVCS----------QEYVEMLKNI-----T 78 (215)
T ss_dssp CEEEEEECCCCTTTTCS-SCC----------GGGHHHHHCTTCCEEEECSCCCC----------HHHHHHHHHH-----C
T ss_pred CcEEEEEecCCCCCChH-HHH----------HHHHHHHhcCCCCEEEECCCCCC----------HHHHHHHHHc-----C
Confidence 48999999999964321 111 11233344578999999999996 1224444443 3
Q ss_pred ceEEEecCCCCCCCCCCCCchhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhhhccc
Q psy2930 92 TELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRK 171 (293)
Q Consensus 92 ~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~ 171 (293)
.|+++|+||||...... . . +|+. .+....
T Consensus 79 ~~v~~V~GNHD~~~~~~-~-------------~-----------------------------------~~~~-~lp~~~- 107 (215)
T 2a22_A 79 KNVYIVSGDLDSAIFNP-D-------------P-----------------------------------ESNG-VFPEYV- 107 (215)
T ss_dssp SCEEECCCTTCCSCCBC-C-------------G-----------------------------------GGTB-CCCSEE-
T ss_pred CCEEEecCCCcCccccc-C-------------h-----------------------------------hhHh-hCCceE-
Confidence 58999999999853210 0 0 0000 000000
Q ss_pred CCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCCCc
Q psy2930 172 DRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGC 251 (293)
Q Consensus 172 ~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~ 251 (293)
....+...|+++|.+++.... +.+.+.++++..+++++++||+|...
T Consensus 108 --------~~~~~~~~i~l~Hg~~~~~~~-------------------------~~~~l~~~~~~~~~d~vl~GHtH~~~ 154 (215)
T 2a22_A 108 --------VVQIGEFKIGLMHGNQVLPWD-------------------------DPGSLEQWQRRLDCDILVTGHTHKLR 154 (215)
T ss_dssp --------EEEETTEEEEEECSTTSSSTT-------------------------CHHHHHHHHHHHTCSEEEECSSCCCE
T ss_pred --------EEecCCeEEEEEcCCccCCCC-------------------------CHHHHHHHHhhcCCCEEEECCcCCCc
Confidence 000234678999966532110 12245566667789999999999987
Q ss_pred eeeccCCCeeEEeccceecc----C-CCCCceEEEEEecCCceee
Q psy2930 252 HKYHAYGKVHEYTVPSFSWR----N-KNNPSFLMGYVVENSSGVN 291 (293)
Q Consensus 252 ~~~~~~~~~~~~~~~s~~~~----~-~~~p~f~~~~~~~~~~~~~ 291 (293)
... .+++..++.+|++.. . ...++|.+++++++++++.
T Consensus 155 ~~~--~~~~~~inpGS~~~~~~~~~~~~~~~y~il~i~~~~i~~~ 197 (215)
T 2a22_A 155 VFE--KNGKLFLNPGTATGAFSALTPDAPPSFMLMALQGNKVVLY 197 (215)
T ss_dssp EEE--ETTEEEEECCCSSCCCCTTSTTCCCEEEEEEEETTEEEEE
T ss_pred cEe--eCCEEEEECCcccccCCCCCCCCCCcEEEEEEeCCcEEEE
Confidence 643 347889999998642 2 2468999999998876654
No 17
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=99.70 E-value=1.2e-15 Score=137.91 Aligned_cols=238 Identities=12% Similarity=0.017 Sum_probs=127.0
Q ss_pred CCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhh--
Q psy2930 8 ESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSL-- 85 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~-- 85 (293)
.+.+.|||+|+||+|++....+.... .......+.+.+.+.+.+||+||++|||++.+... .+......+.+++.
T Consensus 72 ~~~~~mrilhiSDlHLG~~~~~~~~~--~d~~~~l~~lv~~~~~~~~D~VliaGDLfd~~~ps-~~a~~~~~~~Lr~~~~ 148 (472)
T 4fbk_A 72 GSENTIRILISSDPHVGYGEKDPVRG--NDSFVSFNEILEIARERDVDMILLGGDIFHDNKPS-RKALYQALRSLRLNCL 148 (472)
T ss_dssp -CTTCEEEEEECCCCBTTTTTCTTTT--THHHHHHHHHHHHHHHTTCSEEEECSCSBSSSSCC-HHHHHHHHHHHHHHHB
T ss_pred CCCCCeEEEEEecccCCCcccCcccc--hhHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCC-HHHHHHHHHHHHHhcc
Confidence 56778999999999998765332110 11223445566677778999999999999976643 34444445555441
Q ss_pred ---------hc--------------------CCCCceEEEecCCCCCCCCCCCCchhHHHHHH-----HhCCCC------
Q psy2930 86 ---------FS--------------------TPDGTELHVVPGNHDMGFHYRLHPYLNDRFSR-----AFNSSM------ 125 (293)
Q Consensus 86 ---------~~--------------------~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~-----~~~~~~------ 125 (293)
+. ...++||++|+||||....... ......+.. .++...
T Consensus 149 g~~~~~~e~L~d~~~~~~~~~~~~vn~~dp~~~~gIpVf~I~GNHD~~~~~~~-~s~~~LL~~~g~v~l~g~~~~~d~i~ 227 (472)
T 4fbk_A 149 GDKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGDGR-YSALDILQVTGLVNYFGRVPENDNIV 227 (472)
T ss_dssp SSCCCCCEEEEEC-----CCCSCSSSTTCTTBCBSSCEEECCCCCCSCCC--C-CCHHHHHHHTTSCEECCCCSCSSSEE
T ss_pred cCCcchheecchhhhhcccccccccccccccccCCCcEEEEecCCCCcccccc-ccHHHHhccCCcEEEeCCcccCCcee
Confidence 11 0248999999999998532111 011222211 122210
Q ss_pred --cceEEeCCEEEEEEeceeccCCCCCCCchhHHHH-HHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCC
Q psy2930 126 --VKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRI-SLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEE 202 (293)
Q Consensus 126 --~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~ 202 (293)
+..+..++..+.+ .|.++. ..+.+ ..+.+.......+. ....+...|+++|........
T Consensus 228 ~~pv~l~kg~~~val------yGl~y~----~d~rl~r~~~e~~v~~~~p~------~~~~~~~nIlvlH~~~~~~~~-- 289 (472)
T 4fbk_A 228 VSPILLQKGFTKLAL------YGISNV----RDERLYHSFRENKVKFLRPD------LYRDEWFNLLTVHQNHSAHTP-- 289 (472)
T ss_dssp ECCEEEEETTEEEEE------EECCCC----CHHHHHHHHHTTCEEEEEES------TTGGGEEEEEEEESCSCCSST--
T ss_pred EEEEEEEeCCceEEE------EecCCC----chhhhhhhhhhhhhhhhCcc------cccCCceEEEEecCCccCCCc--
Confidence 0112222222211 232221 11222 12221111111000 000345689999988743321
Q ss_pred CCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCCCceee--ccCCCeeEEecccee---cc--CCCC
Q psy2930 203 CSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKY--HAYGKVHEYTVPSFS---WR--NKNN 275 (293)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~--~~~~~~~~~~~~s~~---~~--~~~~ 275 (293)
.+. +.. . +...++++|+.||+|...... .+.++...+..+|.. .. ..+.
T Consensus 290 ---~~y----------------ipe----~-ll~~g~DyValGH~H~~~~~~~~~~~~g~~ivyPGS~~~~s~~e~E~~~ 345 (472)
T 4fbk_A 290 ---TSY----------------LPE----S-FIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAP 345 (472)
T ss_dssp ---TSS----------------CCG----G-GSCTTCSEEEEESCCSCEEEEEEETTTTEEEEECCCSSCSSCCGGGCSC
T ss_pred ---ccc----------------CCh----h-hhhcCCCEEEecCcccceeeecccCCCCeEEEECCCccccccCccCCCC
Confidence 111 111 1 122379999999999998653 233467788888753 22 1247
Q ss_pred CceEEEEEecCCceee
Q psy2930 276 PSFLMGYVVENSSGVN 291 (293)
Q Consensus 276 p~f~~~~~~~~~~~~~ 291 (293)
+||.+++++++.+.++
T Consensus 346 kg~~lveI~~~~v~ve 361 (472)
T 4fbk_A 346 KHCGILNITGKDFHLE 361 (472)
T ss_dssp CEEEEEEEETTEEEEE
T ss_pred CEEEEEEEECCEEEEE
Confidence 8999999998776654
No 18
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=99.70 E-value=1.4e-15 Score=136.43 Aligned_cols=238 Identities=11% Similarity=0.007 Sum_probs=125.5
Q ss_pred CCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhh--
Q psy2930 8 ESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSL-- 85 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~-- 85 (293)
.+.+.|||+|+||+|++....+.... ...+...+.+.+.+.+.+||+||++|||++.+... .+......+.+++.
T Consensus 9 ~~~~~mrilhiSDlHLg~~~~~~~~~--~d~~~~l~~lv~~~~~~~~D~VliaGDLfd~~~p~-~~~~~~~~~~lr~~~~ 85 (417)
T 4fbw_A 9 HNENTIRILISSDPHVGYGEKDPVRG--NDSFVSFNEILEIARERDVDMILLGGDIFHDNKPS-RKALYQALRSLRLNCL 85 (417)
T ss_dssp -CTTCEEEEEECCCCBTTTTTCTTTT--THHHHHHHHHHHHHHHTTCSEEEECSCCBSSSSCC-HHHHHHHHHHHHHHHB
T ss_pred CCCCCeEEEEEEcCCCCCcccccccc--hhHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCC-HHHHHHHHHHHHHhcc
Confidence 45677999999999998764332111 11223445566777778999999999999976643 33444444555441
Q ss_pred ---------hc--------------------CCCCceEEEecCCCCCCCCCCCCchhHHHHHH-----HhCCCC------
Q psy2930 86 ---------FS--------------------TPDGTELHVVPGNHDMGFHYRLHPYLNDRFSR-----AFNSSM------ 125 (293)
Q Consensus 86 ---------~~--------------------~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~-----~~~~~~------ 125 (293)
+. ...++||++++||||....... ......+.. .++...
T Consensus 86 g~~~~~~e~L~d~~~~~~~~~~~~~n~~d~~~~~gIpV~~I~GNHD~~~~~~~-~s~~~lL~~~g~v~l~g~~~~~~~i~ 164 (417)
T 4fbw_A 86 GDKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGDGR-YSALDILQVTGLVNYFGRVPENDNIV 164 (417)
T ss_dssp SSCCCCCEECC------------CCGGGCTTBCBSSCEEECCCGGGC-----C-CCHHHHHHHTTSCEECCCCC---CEE
T ss_pred cCCcccceeccchhhhcccccccccccccccccCCCeEEEEecCCCCcccccc-ccHHHHhccCCeEEEeCCcccCCcee
Confidence 11 0248999999999998532111 011122211 122210
Q ss_pred --cceEEeCCEEEEEEeceeccCCCCCCCchhHHHH-HHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCC
Q psy2930 126 --VKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRI-SLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEE 202 (293)
Q Consensus 126 --~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~ 202 (293)
...+..++..+.+ .|.++. ..+.+ ..+.+.......+. ....+...|+++|........
T Consensus 165 ~~pv~l~~g~~~val------yG~~~~----~d~rl~r~~~~~~v~~~~p~------~~~~~~~nIlvlH~~~~~~~~-- 226 (417)
T 4fbw_A 165 VSPILLQKGFTKLAL------YGISNV----RDERLYHSFRENKVKFLRPD------LYRDEWFNLLTVHQNHSAHTP-- 226 (417)
T ss_dssp ECCEEEEETTEEEEE------EEECCC----CHHHHHHHHHTTCEEEEEES------TTTTTSEEEEEEESCSSCSSS--
T ss_pred EEeEEEEecCceEEE------EeccCC----chhhhhhhhhhhhhhhcCcc------cccCCceEEEEecCCccCCCC--
Confidence 0111222221111 222211 11222 12221111111000 001456789999988743321
Q ss_pred CCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCCCceee--ccCCCeeEEeccceec-cC----CCC
Q psy2930 203 CSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKY--HAYGKVHEYTVPSFSW-RN----KNN 275 (293)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~--~~~~~~~~~~~~s~~~-~~----~~~ 275 (293)
... +.. . +...++++|+.||+|...... ...++...+..+|... +. .+.
T Consensus 227 ---~~y----------------ip~----~-l~~~~~DyvalGH~H~~~~~~~~~~~~g~~i~~PGS~~~~s~~e~E~~~ 282 (417)
T 4fbw_A 227 ---TSY----------------LPE----S-FIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAP 282 (417)
T ss_dssp ---SSS----------------CCG----G-GSCTTCSEEEEESCCSCEEEEEEETTTTEEEEECCCSSCSSCCHHHHSC
T ss_pred ---ccc----------------Cch----h-HhhcCCCEEEecCccccceeccccCCCCEEEEECCCCCcCCCccccCCC
Confidence 111 111 1 222379999999999998653 2344778888888642 22 157
Q ss_pred CceEEEEEecCCceee
Q psy2930 276 PSFLMGYVVENSSGVN 291 (293)
Q Consensus 276 p~f~~~~~~~~~~~~~ 291 (293)
+||.++++.++.+.++
T Consensus 283 kg~~lvei~~~~~~~e 298 (417)
T 4fbw_A 283 KHCGILNITGKDFHLE 298 (417)
T ss_dssp CEEEEEEEETTEEEEE
T ss_pred CEEEEEEEECCEEEEE
Confidence 8999999998776654
No 19
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=99.70 E-value=3.2e-16 Score=132.74 Aligned_cols=209 Identities=8% Similarity=-0.022 Sum_probs=111.2
Q ss_pred ceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHH---hc--CCCEEEEcCccCCCCccCChhhHHHHHHHHHhhh
Q psy2930 12 NIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVA---LH--QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLF 86 (293)
Q Consensus 12 ~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~ 86 (293)
+|||+++||+|.. ... + +++.+.++ .. ++|.||++||+++.+. ...+. ++.+.++.
T Consensus 1 mm~i~~isD~H~~-------~~~------l-~~~l~~~~~~~~~~~~~d~ii~~GD~~~~g~--~~~~~---~~~l~~l~ 61 (252)
T 1nnw_A 1 MVYVAVLANIAGN-------LPA------L-TAALSRIEEMREEGYEIEKYYILGNIVGLFP--YPKEV---IEVIKDLT 61 (252)
T ss_dssp -CEEEEEECCTTC-------HHH------H-HHHHHHHHHHHHTTCCEEEEEEESCSSSSSS--CHHHH---HHHHHHHH
T ss_pred CcEEEEEeecCCC-------HHH------H-HHHHHHHHhhhhccCCCCEEEEeCccCCCCC--CHHHH---HHHHHhhH
Confidence 4899999999961 111 1 12233333 45 7999999999999775 22222 33344332
Q ss_pred cCCCCceEEEecCCCCCCCCCCCCchhHHHHHHHhCCCCc-ceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHH
Q psy2930 87 STPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMV-KLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAK 165 (293)
Q Consensus 87 ~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~ 165 (293)
. ..++++|+||||....... ...+.... .....++.. . ....+......+++++||++.
T Consensus 62 ~---~~~~~~v~GNhD~~~~~~~---------~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~l~~~~~~~L~~l 121 (252)
T 1nnw_A 62 K---KENVKIIRGKYDQIIAMSD---------PHATDPGYIDKLELPGHV---K-----KALKFTWEKLGHEGREYLRDL 121 (252)
T ss_dssp H---HSCEEEECCHHHHHHHHSC---------TTCSSSGGGGGSSCCHHH---H-----HHHHHHHHHHHHHHHHHHHTS
T ss_pred h---hcCeeEEecchHHHhhccc---------cccCCcccccchhhhHHH---H-----HHHHHHHHHCCHHHHHHHHhC
Confidence 1 1479999999997320000 00000000 000000000 0 000000112445677777652
Q ss_pred hhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhc-CccEEEe
Q psy2930 166 LKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYL-NPRLVID 244 (293)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~-~~~lvl~ 244 (293)
...... ..+...|+++|+++....... .. .....+.+.+++++. +++++++
T Consensus 122 p~~~~~----------~~~~~~i~~~H~~p~~~~~~~--~~----------------~~~~~~~l~~~~~~~~~~~~vi~ 173 (252)
T 1nnw_A 122 PIYLVD----------KIGGNEVFGVYGSPINPFDGE--VL----------------AEQPTSYYEAIMRPVKDYEMLIV 173 (252)
T ss_dssp CSCEEE----------EETTEEEEEESSCSSCTTTCC--CC----------------SSCCHHHHHHHHGGGTTSSEEEE
T ss_pred CceEEE----------eeCCcEEEEEcCCCCCCcccc--cC----------------CCCCHHHHHHHHhcCCCCCEEEE
Confidence 211100 013457899999874221100 00 011234567788888 8999999
Q ss_pred cCCCCCceeeccCCCeeEEeccceeccCC--CCCceEEEEEecCCce
Q psy2930 245 GHTHNGCHKYHAYGKVHEYTVPSFSWRNK--NNPSFLMGYVVENSSG 289 (293)
Q Consensus 245 GH~H~~~~~~~~~~~~~~~~~~s~~~~~~--~~p~f~~~~~~~~~~~ 289 (293)
||+|...... .+++..++++|++.... +.++|.++++++..++
T Consensus 174 GHtH~~~~~~--~~~~~~in~Gs~~~~~~~~~~~~y~il~~~~~~v~ 218 (252)
T 1nnw_A 174 ASPMYPVDAM--TRYGRVVCPGSVGFPPGKEHKATFALVDVDTLKPK 218 (252)
T ss_dssp STTCSEEEEE--ETTEEEEEECCSSSCSSSSCCEEEEEEETTTCCEE
T ss_pred CCccccceEe--cCCeEEEECCCccCCCCCCCcceEEEEECCCCeEE
Confidence 9999987653 24788899988775433 3568998887664443
No 20
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase; HET: PE5; 1.93A {Bacillus subtilis}
Probab=99.70 E-value=4.6e-15 Score=138.12 Aligned_cols=244 Identities=11% Similarity=0.137 Sum_probs=145.0
Q ss_pred CCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccC------------------C
Q psy2930 10 INNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYV------------------G 71 (293)
Q Consensus 10 ~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~------------------~ 71 (293)
..++||+++||.+..... ... +.. +.+.+||+||++||.+...... +
T Consensus 114 ~~~~rfa~~sc~~~~~g~----~~~----------~~~-ia~~~~D~vlhlGD~iY~d~~~~~~~~~~~~R~~~~~e~~t 178 (527)
T 2yeq_A 114 VPQMTFAFASCQQYEHGY----YTA----------YKH-MAKEKLDLVFHLGDYIYEYGPNEYVSKTGNVRTHNSAEIIT 178 (527)
T ss_dssp CCCEEEEEECCCCGGGCC----CHH----------HHH-HTTSCCSEEEECSCSSCCCCTTSSCCTTCCCSCCSSSSCCS
T ss_pred CCCeEEEEEecCCCCCCc----cHH----------HHH-HHhcCCCEEEecCCcccCCCCCcccccccccccCCcccccC
Confidence 367999999999873221 111 111 2346999999999999643211 1
Q ss_pred hhhHHHHHHH------HHhhhcCCCCceEEEecCCCCCCCCCCCC------ch------hHHHHHHHh---CC-------
Q psy2930 72 GEDFDNYVRR------FYSLFSTPDGTELHVVPGNHDMGFHYRLH------PY------LNDRFSRAF---NS------- 123 (293)
Q Consensus 72 ~~~~~~~~~~------~~~~~~~~~~~~~~~v~GNHD~~~~~~~~------~~------~~~~~~~~~---~~------- 123 (293)
.+.|...++. ++.+. ..+|++++.||||+....... +. ....++.+| +.
T Consensus 179 l~~yr~~y~~~~~dp~lq~~~---a~~P~i~~wDDHE~~nn~~~~~~~~~~~~~~f~~rr~~A~~ay~e~~P~~~~~~p~ 255 (527)
T 2yeq_A 179 LQDYRNRHAQYRSDANLKAAH---AAFPWVVTWDDHEVENNYANKIPEKGQSVEAFVLRRAAAYQAYYEHMPLRISSLPN 255 (527)
T ss_dssp HHHHHHHHHHHHTCHHHHHHH---HHSEEEECCCSTTTSTTCBTTBCSTTCCHHHHHHHHHHHHHHHHHHSCCCGGGCCB
T ss_pred HHHHHHHHHHHhCCHHHHHHH---hcCCEEEecccccccCCCCCCcccccCCcccHHHHHHHHHHHHHHhCCCCcccCCC
Confidence 1223333322 22222 358999999999996432111 00 001233333 21
Q ss_pred ----CCcceEEeCC-EEEEEEeceeccCCCC---------------CCCchhHHHHHHHHHHhhhcccCCCCCccccCCC
Q psy2930 124 ----SMVKLLSIKG-SYFVLINSMALEGDGC---------------FLCKPAQDRISLISAKLKCCRKDRECPKSMKLGS 183 (293)
Q Consensus 124 ----~~~~~~~~~~-~~~i~lds~~~~~~~~---------------~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 183 (293)
..|+.+.+++ ++|++||+..+..... .-.-...+|++||++.|+.+ .
T Consensus 256 ~~~~~~y~sf~~G~lv~~i~LDtR~yr~~~~~~~~~~~~~~~~~~~~~~~lG~~Q~~WL~~~L~~s-------------~ 322 (527)
T 2yeq_A 256 GPDMQLYRHFTYGNLASFNVLDTRQYRDDQANNDGNKPPSDESRNPNRTLLGKEQEQWLFNNLGSS-------------T 322 (527)
T ss_dssp TTBCCCCEEEEETTTEEEEECCSSSSCCCCGGGSSEECCCHHHHCTTCCSSCHHHHHHHHHHHHHC-------------C
T ss_pred CCCceEEEEEEcCCcceEEEEeccccccccccccccccccccccCCcccccCHHHHHHHHHHHhcC-------------C
Confidence 1367899999 9999999987543210 01124679999999999875 4
Q ss_pred CCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCcc--EEEecCCCCCceee--ccC--
Q psy2930 184 YSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPR--LVIDGHTHNGCHKY--HAY-- 257 (293)
Q Consensus 184 ~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~--lvl~GH~H~~~~~~--~~~-- 257 (293)
..++||++|+|++...... +.. .. .+ ...| .+| ...++.+.++|.+++++ ++|+||.|...... ...
T Consensus 323 a~W~Iv~s~~p~~~~~~~~-g~~--~~-~~-~D~W-~g~-~~~R~~Ll~~l~~~~v~n~vvLsGDvH~~~~~~~~~~~~~ 395 (527)
T 2yeq_A 323 AHWNVLAQQIFFAKWNFGT-SAS--PI-YS-MDSW-DGY-PAQRERVINFIKSKNLNNVVVLTGDVHASWASNLHVDFEK 395 (527)
T ss_dssp SSEEEEECSSCCSCCCSSC-SSS--CC-EE-TTSG-GGS-HHHHHHHHHHHHHTTCCCEEEEECSSSSEEEEEEESSTTC
T ss_pred CCeEEEEeCCcccccccCC-Ccc--cc-cC-ccch-hcc-HHHHHHHHHHHHHhCCCCEEEEEcchHHHhHhhccccccC
Confidence 5688999999997653211 100 00 00 0011 111 22355777888888874 99999999997632 111
Q ss_pred --CC--eeEEeccceeccC-C---------------------CCCceEEEEEecCCceee
Q psy2930 258 --GK--VHEYTVPSFSWRN-K---------------------NNPSFLMGYVVENSSGVN 291 (293)
Q Consensus 258 --~~--~~~~~~~s~~~~~-~---------------------~~p~f~~~~~~~~~~~~~ 291 (293)
.+ ..++++++++... + ...||.+++|+++.+++.
T Consensus 396 p~~~~~~~ef~~ssi~s~~~g~~~~~~~~~~~~~np~~~~~~~~~Gy~~v~vt~~~~~~~ 455 (527)
T 2yeq_A 396 TSSKIFGAEFVGTSITSGGNGADKRADTDQILKENPHIQFFNDYRGYVRCTVTPHQWKAD 455 (527)
T ss_dssp TTSCEEEEEEECCCSSTTCSCBSBCTTHHHHHHHCTTEEEEEBCEEEEEEEEETTEEEEE
T ss_pred CCCCceEEEEEcCCeeCCCCcccchhhhhhhhhcCCcceeeeCCCCEEEEEEeccEEEEE
Confidence 11 5788777664321 0 134899999999876654
No 21
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=99.70 E-value=5.5e-16 Score=125.72 Aligned_cols=170 Identities=12% Similarity=0.010 Sum_probs=99.7
Q ss_pred CCCCCCCCc-eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHH
Q psy2930 4 PASPESINN-IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRF 82 (293)
Q Consensus 4 ~~~~~~~~~-~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~ 82 (293)
|.+|.+.+. |||+++||+|. . .. ..+++.+.++..++|+|+++||+++. +.++.+
T Consensus 16 ~~~~~~~~g~m~i~~iSD~Hg-~------~~-------~l~~~l~~~~~~~~D~ii~~GDl~~~----------~~~~~l 71 (190)
T 1s3l_A 16 TTENLYFQGHMKIGIMSDTHD-H------LP-------NIRKAIEIFNDENVETVIHCGDFVSL----------FVIKEF 71 (190)
T ss_dssp ----------CEEEEECCCTT-C------HH-------HHHHHHHHHHHSCCSEEEECSCCCST----------HHHHHG
T ss_pred cccChhhcCCeEEEEEeeCCC-C------HH-------HHHHHHHHHhhcCCCEEEECCCCCCH----------HHHHHH
Confidence 455666564 99999999994 1 11 11233344556799999999999861 123333
Q ss_pred HhhhcCCCCceEEEecCCCCCCCCCCCCchhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHH
Q psy2930 83 YSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLI 162 (293)
Q Consensus 83 ~~~~~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l 162 (293)
.+ .+.|+++|+||||... ..+.+.+..... .. +... .
T Consensus 72 ~~-----l~~~~~~V~GNhD~~~---------~~~~~~~~~~~~-----~~--l~~~--------------~-------- 108 (190)
T 1s3l_A 72 EN-----LNANIIATYGNNDGER---------CKLKEWLKDINE-----EN--IIDD--------------F-------- 108 (190)
T ss_dssp GG-----CSSEEEEECCTTCCCH---------HHHHHHHHHHCT-----TC--EEES--------------E--------
T ss_pred Hh-----cCCCEEEEeCCCcchH---------HHHHHHhcccCh-----hh--hccc--------------c--------
Confidence 32 2579999999999752 111111111000 00 0000 0
Q ss_pred HHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhc-CccE
Q psy2930 163 SAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYL-NPRL 241 (293)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~-~~~l 241 (293)
..+. .+...|+++|.|+.. +.+.+.+. ++++
T Consensus 109 -~~~~---------------~~~~~ill~Hg~~~~--------------------------------l~~~~~~~~~~d~ 140 (190)
T 1s3l_A 109 -ISVE---------------IDDLKFFITHGHHQS--------------------------------VLEMAIKSGLYDV 140 (190)
T ss_dssp -EEEE---------------ETTEEEEEEESCCHH--------------------------------HHHHHHHHSCCSE
T ss_pred -eEEe---------------eCCcEEEEECCChHH--------------------------------HHHHHHhcCCCCE
Confidence 0011 235679999988621 22334444 8999
Q ss_pred EEecCCCCCceeeccCCCeeEEeccceeccCCCCCceEEEEEecCCcee
Q psy2930 242 VIDGHTHNGCHKYHAYGKVHEYTVPSFSWRNKNNPSFLMGYVVENSSGV 290 (293)
Q Consensus 242 vl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~~~~p~f~~~~~~~~~~~~ 290 (293)
+++||+|.+.... .+++..++.+|++.+.+..++|.++++.++++++
T Consensus 141 vl~GHtH~~~~~~--~~~~~~iNpGs~~~r~~~~~~y~il~~~~~~v~~ 187 (190)
T 1s3l_A 141 VIYGHTHERVFEE--VDDVLVINPGECCGYLTGIPTIGILDTEKKEYRE 187 (190)
T ss_dssp EEEECSSCCEEEE--ETTEEEEECCCSSCTTTSCCEEEEEETTTTEEEE
T ss_pred EEECCCCCcceEE--ECCEEEEECCcccccCCCCCEEEEEEcCCCcEEE
Confidence 9999999998653 3478899999987733356899999998776554
No 22
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=99.67 E-value=4.4e-15 Score=133.87 Aligned_cols=235 Identities=15% Similarity=0.061 Sum_probs=125.8
Q ss_pred CCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhh-
Q psy2930 8 ESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLF- 86 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~- 86 (293)
...+.|||+++||+|++......... .......+.+.+.+.+.+||+||++||+++.+.. ..+.+....+.++++.
T Consensus 28 ~~~~~mrilhiSDlHLg~~~~~~~~~--~d~~~~l~~ll~~~~~~~~D~VliaGDlfd~~~~-~~~~~~~~~~~L~r~~~ 104 (431)
T 3t1i_A 28 DDENTFKILVATDIHLGFMEKDAVRG--NDTFVTLDEILRLAQENEVDFILLGGDLFHENKP-SRKTLHTCLELLRKYCM 104 (431)
T ss_dssp CGGGEEEEEEECCCCBTTTSSCTTTT--THHHHHHHHHHHHHHHTTCSEEEECSCCBSSSSC-CHHHHHHHHHHHHHHHB
T ss_pred CCCCCEEEEEEeccCCCCcccccchh--hhHHHHHHHHHHHHhhcCCCEEEEcCccccCCCC-CHHHHHHHHHHHHHHhc
Confidence 45567999999999998765432111 1122344556667778899999999999997653 2344445455555431
Q ss_pred ----------c--------------------CCCCceEEEecCCCCCCCCCCCCchhHHHHH-----HHhCCCC-c----
Q psy2930 87 ----------S--------------------TPDGTELHVVPGNHDMGFHYRLHPYLNDRFS-----RAFNSSM-V---- 126 (293)
Q Consensus 87 ----------~--------------------~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~-----~~~~~~~-~---- 126 (293)
. ...++|+++|+||||......... ..+.+. .+|+... .
T Consensus 105 ~~~~~~~~~lsd~~~~~~~~~~~~~ny~d~n~~~~ipV~~I~GNHD~~~g~~~l~-~~~lL~~~glv~~fg~~~~~e~i~ 183 (431)
T 3t1i_A 105 GDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHDDPTGADALC-ALDILSCAGFVNHFGRSMSVEKID 183 (431)
T ss_dssp CSSCCCCEECSCC------------------CCBCSCEEECCCSSSCCBTTTTBC-HHHHHHHHTSEEECCCCCCSSCEE
T ss_pred cCCcccceeccchhhccccccccccccccccccCCCcEEEEccCCCCcccccccC-HHHHhccCCcEEEECCcCccccee
Confidence 0 024899999999999853211111 122221 1233210 0
Q ss_pred ---ceEEeCC--EEEEEEeceeccCCCCCCCchhHHHHHHHHHH--hhhcccCCCCCccccCCCCCCCEEeeccCCCcCC
Q psy2930 127 ---KLLSIKG--SYFVLINSMALEGDGCFLCKPAQDRISLISAK--LKCCRKDRECPKSMKLGSYSQPIILQHFPLYRES 199 (293)
Q Consensus 127 ---~~~~~~~--~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~--l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~ 199 (293)
..+..++ +.++++ ++ ...+.+..+... ++... + . ...++.+.|+++|......+
T Consensus 184 ~~Pv~l~~g~~~valyGl--------~~----~~~~~l~~~~~~~~v~~~~-p----~--~~~~~~~~Ilv~H~~~~~~g 244 (431)
T 3t1i_A 184 ISPVLLQKGSTKIALYGL--------GS----IPDERLYRMFVNKKVTMLR-P----K--EDENSWFNLFVIHQNRSKHG 244 (431)
T ss_dssp ECCEEEEETTEEEEEEEE--------CC----CCHHHHHHHHHTTCEEECC-C----S--SCGGGEEEEEEECSCCSCSS
T ss_pred eEEEEEecCCEeEEEEeC--------CC----CCHHHHhhhhccccceeec-c----c--ccCCCceEEEEECCCccCCC
Confidence 0111233 222222 11 112222221111 11000 0 0 00034578999999773221
Q ss_pred CCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCCCceee--ccCCCeeEEeccceecc-C----
Q psy2930 200 DEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKY--HAYGKVHEYTVPSFSWR-N---- 272 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~--~~~~~~~~~~~~s~~~~-~---- 272 (293)
. .+. +.. .+ ...++++|+.||+|...... .+.++...+..+|.... .
T Consensus 245 ~-----~~~----------------ip~----~l-~~~~~Dyv~lGH~H~~~~~~~~~~~~~~~i~yPGS~~~~s~~e~E 298 (431)
T 3t1i_A 245 S-----TNF----------------IPE----QF-LDDFIDLVIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGE 298 (431)
T ss_dssp S-----SSS----------------CCG----GG-SCTTCCEEEECSCCSCEEEEEECTTTCCEEEECCCSSCCSCCHHH
T ss_pred c-----ccc----------------CCH----hH-hhCCCCEEEecccccccccccccCCCCEEEEeCCCCcccCcCccc
Confidence 1 111 111 11 12268999999999998643 12346777888875432 1
Q ss_pred CCCCceEEEEEecCCceee
Q psy2930 273 KNNPSFLMGYVVENSSGVN 291 (293)
Q Consensus 273 ~~~p~f~~~~~~~~~~~~~ 291 (293)
...+||.+++++++.+.++
T Consensus 299 ~~~k~~~lvei~~~~~~ve 317 (431)
T 3t1i_A 299 AVKKHVGLLRIKGRKMNMH 317 (431)
T ss_dssp HSCCEEEEEEEETTEEEEE
T ss_pred CCCCEEEEEEEECCEEEEE
Confidence 2467999999998766554
No 23
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=99.67 E-value=1e-16 Score=135.46 Aligned_cols=192 Identities=15% Similarity=0.093 Sum_probs=109.7
Q ss_pred CceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCC
Q psy2930 11 NNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPD 90 (293)
Q Consensus 11 ~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (293)
+.|||+++||+|.. . .. + +++.+.+. ++|.|+++||+++.+. .. .+.++.+.++-
T Consensus 2 ~~mri~~isDiHg~-~------~~------l-~~~l~~~~--~~d~ii~~GDl~~~g~--~~---~~~~~~l~~~~---- 56 (246)
T 3rqz_A 2 NAMRILIISDVHAN-L------VA------L-EAVLSDAG--RVDDIWSLGDIVGYGP--RP---RECVELVRVLA---- 56 (246)
T ss_dssp CCCCEEEECCCTTC-H------HH------H-HHHHHHHC--SCSEEEECSCCSSSSS--CH---HHHHHHHHHHC----
T ss_pred CCcEEEEEeecCCC-H------HH------H-HHHHHhcc--CCCEEEECCCcCCCCC--CH---HHHHHHHHhcC----
Confidence 46999999999951 1 11 1 22233333 8999999999999776 22 23344444431
Q ss_pred CceEEEecCCCCCCCCCCCCchhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhhhcc
Q psy2930 91 GTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCR 170 (293)
Q Consensus 91 ~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 170 (293)
.+++|+||||......... ..+. ................++++||+......
T Consensus 57 --~~~~v~GNhD~~~~~~~~~---~~~~----------------------~~~~~~~~~~~~~l~~~~~~~L~~lp~~~- 108 (246)
T 3rqz_A 57 --PNISVIGNHDWACIGRLSL---DEFN----------------------PVARFASYWTTMQLQAEHLQYLESLPNRM- 108 (246)
T ss_dssp --SSEECCCHHHHHHTCCCCC---C--C----------------------GGGGCHHHHHHHHCCHHHHHHHHHCCSEE-
T ss_pred --CCEEEeCchHHHHhccCCc---cccC----------------------HHHHHHHHHHHHHcCHHHHHHHHhCCcEE-
Confidence 2599999999742110000 0000 00000000000123356777777532211
Q ss_pred cCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCCC
Q psy2930 171 KDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNG 250 (293)
Q Consensus 171 ~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~ 250 (293)
....++++|.++...... .........+++++.+++++|+||+|.+
T Consensus 109 -------------~~~~i~~~Hg~p~~~~~~---------------------~~~~~~~~~~~l~~~~~~l~i~GHtH~p 154 (246)
T 3rqz_A 109 -------------IDGDWTVVHGSPRHPIWE---------------------YIYNARIAALNFPAFDTPLCFVGHTHVP 154 (246)
T ss_dssp -------------EETTEEEESSCSSSTTTC---------------------CCCSHHHHHHHGGGCCSSEEECCSSSSE
T ss_pred -------------EECCEEEEECCcCCcccc---------------------ccCChHHHHHHHhccCCCEEEECCcCcc
Confidence 123789999887432110 1223346678889999999999999998
Q ss_pred ceeec-------------------cCCCeeEEeccceeccCC--CCCceEEEEEecCCce
Q psy2930 251 CHKYH-------------------AYGKVHEYTVPSFSWRNK--NNPSFLMGYVVENSSG 289 (293)
Q Consensus 251 ~~~~~-------------------~~~~~~~~~~~s~~~~~~--~~p~f~~~~~~~~~~~ 289 (293)
..... -..+...++++|+..... +..+|.+++.....++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ivNpGSVG~Prdg~p~A~Y~i~d~~~~~v~ 214 (246)
T 3rqz_A 155 LYIREDEALSNVAPHHPNDGEVLDVSSGRYIINPGAVGQPRDGDPRASYAIFEPDAQRVT 214 (246)
T ss_dssp EEEEHHHHHTTCCCBCCCTTCEEECSSSCEEEEECCSSCCCSSCCSEEEEEEEGGGTEEE
T ss_pred cEEEecccccccccccccccceeecCCCeEEEECCccCCCCCcCCcceEEEEECCCCEEE
Confidence 75431 012478899999875443 3458999987765444
No 24
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=99.67 E-value=9.2e-16 Score=131.25 Aligned_cols=210 Identities=12% Similarity=0.091 Sum_probs=114.1
Q ss_pred CCCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhc
Q psy2930 8 ESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFS 87 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~ 87 (293)
..-.++||+++||+|.. +. ..+++.+.++..++|.|+++||+++.|.. . .+.++.++++
T Consensus 7 ~~~~~~~i~~iSDiHg~-------~~-------~l~~vl~~~~~~~~D~ii~~GDlv~~g~~--~---~~~~~~l~~~-- 65 (270)
T 3qfm_A 7 HHMDMTKIALLSDIHGN-------TT-------ALEAVLADARQLGVDEYWLLGDILMPGTG--R---RRILDLLDQL-- 65 (270)
T ss_dssp ----CEEEEEECCCTTC-------HH-------HHHHHHHHHHHTTCCEEEECSCCSSSSSC--S---HHHHHHHHTS--
T ss_pred ccccccEEEEEecCCCC-------HH-------HHHHHHHHHHhcCCCEEEEcCCCCCCCCC--H---HHHHHHHHcc--
Confidence 34467899999999961 11 12334455566789999999999998763 1 2223334332
Q ss_pred CCCCceEEEecCCCCCCCCCCCCchhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhh
Q psy2930 88 TPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLK 167 (293)
Q Consensus 88 ~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~ 167 (293)
.|+++|+||||.... ......++.......... .... +....+.+++++||+..-.
T Consensus 66 ----~~~~~v~GNhD~~~~--------~~~~~~~~~~~~~~~~~~-------~~~~-----~~~~~L~~~~~~~L~~LP~ 121 (270)
T 3qfm_A 66 ----PITARVLGNWEDSLW--------HGVRKELDSTRPSQRYLL-------RQCQ-----YVLEEISLEEIEVLHNQPL 121 (270)
T ss_dssp ----CEEEECCCHHHHHHH--------HHHTTCSCTTSHHHHHHH-------HHHH-----HHHTTSCHHHHHHHHSCCS
T ss_pred ----CCEEEEcCChHHHHH--------HhhccccCCCcHHHHHHH-------HHHH-----HHHHHcCHHHHHHHHhCCC
Confidence 278999999997420 000000000000000000 0000 0001234566777764321
Q ss_pred hcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCC
Q psy2930 168 CCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHT 247 (293)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~ 247 (293)
.... .-+...|+++|..+...-..... ..-..+.+.++++..+++++|+||+
T Consensus 122 ~~~~----------~~~g~~i~lvHg~p~~~~~~~~~------------------~~~~~~~l~~~~~~~~~d~~i~GHt 173 (270)
T 3qfm_A 122 QIHR----------QFGDLTVGISHHLPDKNWGRELI------------------HTGKQEEFDRLVTHPPCDIAVYGHI 173 (270)
T ss_dssp EEEE----------EETTEEEEEESSBTTBSSSSTTS------------------TTCCHHHHHHTTTTTTCSEEECCSS
T ss_pred ceEE----------EECCcEEEEEECCCCCCCCceec------------------CCCcHHHHHHHhcccCCCEEEECCc
Confidence 1100 01345788999776432110000 0111234566677778999999999
Q ss_pred CCCceeeccCCCeeEEeccceeccCC--------CCCceEEEEEecCC-ceee
Q psy2930 248 HNGCHKYHAYGKVHEYTVPSFSWRNK--------NNPSFLMGYVVENS-SGVN 291 (293)
Q Consensus 248 H~~~~~~~~~~~~~~~~~~s~~~~~~--------~~p~f~~~~~~~~~-~~~~ 291 (293)
|.+..... .++...++.+|++.... +.++|.++++++++ .+|+
T Consensus 174 H~~~~~~~-~~~~~~iNpGSvg~pr~~~~~~~~~~~asyaild~~~~~~~~v~ 225 (270)
T 3qfm_A 174 HQQLLRYG-TGGQLIVNPGSIGQPFFLDAQLRKDLRAQYMILEFDDKGLVDMD 225 (270)
T ss_dssp CSEEEEEC-TTSCEEEEECCSSSCCCSSTTGGGCCCEEEEEEEEETTEEEEEE
T ss_pred CchHheec-cCCEEEEECCCccCCCCCCccccCCCCCEEEEEEecCCCceEEE
Confidence 98876432 24788999999885432 25799999999875 3444
No 25
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=99.66 E-value=2.8e-14 Score=125.82 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=56.6
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
|||+++||+|++...... ..+...-....+.+.+.+.+.+||+||++||+++.+.. ..+.+....+.+.++. ..++
T Consensus 1 mkilh~sD~Hlg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~vl~~GDl~d~~~~-~~~~~~~~~~~l~~l~--~~~~ 76 (333)
T 1ii7_A 1 MKFAHLADIHLGYEQFHK-PQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRP-SPGTLKKAIALLQIPK--EHSI 76 (333)
T ss_dssp CEEEEECCCCBTCCGGGC-HHHHHHHHHHHHHHHHHHHHTTCSEEEEESCSBSSSSC-CHHHHHHHHHHHHHHH--TTTC
T ss_pred CEEEEEcccCCCCcccCC-chhhHHHHHHHHHHHHHHHhcCCCEEEECCCcCCCCCC-CHHHHHHHHHHHHHHH--HCCC
Confidence 799999999997642111 11111111233445566667899999999999996543 2333444444444443 3578
Q ss_pred eEEEecCCCCCC
Q psy2930 93 ELHVVPGNHDMG 104 (293)
Q Consensus 93 ~~~~v~GNHD~~ 104 (293)
|+++|+||||..
T Consensus 77 ~v~~v~GNHD~~ 88 (333)
T 1ii7_A 77 PVFAIEGNHDRT 88 (333)
T ss_dssp CEEEECCTTTCC
T ss_pred cEEEeCCcCCCc
Confidence 999999999985
No 26
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=99.62 E-value=8.2e-15 Score=117.38 Aligned_cols=61 Identities=15% Similarity=0.035 Sum_probs=46.8
Q ss_pred HHHHHHhhcCccEEEecCCCCCceeeccCCCeeEEeccceecc-CCC-CCceEEEEEecCCceee
Q psy2930 229 STDMLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWR-NKN-NPSFLMGYVVENSSGVN 291 (293)
Q Consensus 229 ~~~~ll~~~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~-~~~-~p~f~~~~~~~~~~~~~ 291 (293)
.+.+++++.+++++++||+|...... .+++..++.+|++.. .+. .++|.+++++++++++.
T Consensus 96 ~l~~~~~~~~~d~vi~GHtH~~~~~~--~~~~~~inpGs~~~~~~~~~~~~y~il~~~~~~~~v~ 158 (176)
T 3ck2_A 96 KLDYWAQEEEAAICLYGHLHVPSAWL--EGKILFLNPGSISQPRGTIRECLYARVEIDDSYFKVD 158 (176)
T ss_dssp HHHHHHHHTTCSEEECCSSCCEEEEE--ETTEEEEEECCSSSCCTTCCSCCEEEEEECSSEEEEE
T ss_pred HHHHHHHhcCCCEEEECCcCCCCcEE--ECCEEEEECCCCCcCCCCCCCCeEEEEEEcCCEEEEE
Confidence 45677777899999999999997643 247888999887743 333 38999999998776654
No 27
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=99.60 E-value=3.3e-15 Score=121.69 Aligned_cols=169 Identities=18% Similarity=0.157 Sum_probs=94.6
Q ss_pred ceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHh--cCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCC
Q psy2930 12 NIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL--HQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTP 89 (293)
Q Consensus 12 ~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (293)
.|||+++||+|++....... ..+.....+.+.+.+.+++ .++|+|+++||+++.+. ..... .+.+.++
T Consensus 1 ~~~i~~iSD~H~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~D~vi~~GDl~~~~~--~~~~~---~~~l~~l---- 70 (195)
T 1xm7_A 1 NAMMYFISDTHFYHENIINL-NPEVRFKGFEIVILTNLLKVLKPEDTLYHLGDFTWHFN--DKNEY---LRIWKAL---- 70 (195)
T ss_dssp CCCEEEEBCCCBTCTTHHHH-STTTCCTTHHHHHHHHHHTTCCTTCEEEECSCCBSCSC--CTTSH---HHHHHHS----
T ss_pred CcEEEEEeccccCCCccccc-cCCCCHHHHHHHHHHHHHHhCCCCCEEEECCCCCCCch--hHHHH---HHHHHHC----
Confidence 48999999999975421110 0111001233445555555 48999999999998752 22222 2333332
Q ss_pred CCceEEEecCCCCCCCCCCCCchhHHHHHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhhhc
Q psy2930 90 DGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCC 169 (293)
Q Consensus 90 ~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 169 (293)
+.|+++|+||||... ..+. .. .. .+ . ++.+ ++.
T Consensus 71 -~~~~~~v~GNhD~~~---------~~~~----~~-~~----------~l-----~------------~~~~----l~~- 103 (195)
T 1xm7_A 71 -PGRKILVMGNHDKDK---------ESLK----EY-FD----------EI-----Y------------DFYK----IIE- 103 (195)
T ss_dssp -SSEEEEECCTTCCCH---------HHHT----TT-CS----------EE-----E------------SSEE----EEE-
T ss_pred -CCCEEEEeCCCCCch---------hhhh----hh-hh----------ch-----h------------HHHH----HHh-
Confidence 248999999999742 1111 10 00 00 0 0000 110
Q ss_pred ccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhhhcccccccccccCHHHHHHHHhhcCccEEEecCCCC
Q psy2930 170 RKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHN 249 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~ 249 (293)
.+...|+++|+|+....... | ..+.+.+.+++++.+++++++||+|.
T Consensus 104 -------------~~~~~i~~~H~~~~~~~~~~-------------------~-~~~~~~l~~~~~~~~~~~vi~GHtH~ 150 (195)
T 1xm7_A 104 -------------HKGKRILLSHYPAKDPITER-------------------Y-PDRQEMVREIYFKENCDLLIHGHVHW 150 (195)
T ss_dssp -------------ETTEEEEEESSCSSCSSCCS-------------------C-HHHHHHHHHHHHHTTCSEEEECCCCC
T ss_pred -------------cCCcEEEEEccCCcCCCccc-------------------c-cchHHHHHHHHHHcCCcEEEECCcCC
Confidence 12457999999985432110 0 11124567778888999999999999
Q ss_pred Cceeec--cCC-CeeEEeccceec
Q psy2930 250 GCHKYH--AYG-KVHEYTVPSFSW 270 (293)
Q Consensus 250 ~~~~~~--~~~-~~~~~~~~s~~~ 270 (293)
...... ..+ +++.+++++-.+
T Consensus 151 ~~~~~~~g~~~~g~~~~nvg~~~~ 174 (195)
T 1xm7_A 151 NREGIKCACKDYRIECINANVEWN 174 (195)
T ss_dssp CSCC--CCTTSSSCCEEECBGGGT
T ss_pred CCcccccccccCCcceEEEeEecc
Confidence 976432 112 566788776443
No 28
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=99.55 E-value=9.1e-14 Score=111.39 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=39.4
Q ss_pred cCccEEEecCCCCCceeeccCCCeeEEeccceeccCCCCCceEEEEEecCCceeee
Q psy2930 237 LNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRNKNNPSFLMGYVVENSSGVNL 292 (293)
Q Consensus 237 ~~~~lvl~GH~H~~~~~~~~~~~~~~~~~~s~~~~~~~~p~f~~~~~~~~~~~~~~ 292 (293)
.+++++++||+|.+.... .+++..++.+|++. ++|.+++++++++++++
T Consensus 127 ~~~d~vi~GHtH~~~~~~--~~~~~~iNpGS~~~-----~sy~il~~~~~~~~~~~ 175 (178)
T 2kkn_A 127 EKPQVILFGHTHEPEDTV--KAGVRFLNPGSLAE-----GSYAVLELDGGEVRFEL 175 (178)
T ss_dssp SCCSEEECCSCSSCCEEE--ETTEEEECCCCTTT-----TEEEEEEEETTEEEEEE
T ss_pred cCCCEEEECccCCCCeEE--eCCEEEEECCCCCC-----CeEEEEEECCCEEEEEE
Confidence 478999999999997643 24788888888653 89999999998877764
No 29
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=99.52 E-value=6.3e-13 Score=109.20 Aligned_cols=77 Identities=23% Similarity=0.253 Sum_probs=48.6
Q ss_pred CCCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCC-hhh--HHHHHHHHHhh
Q psy2930 9 SINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVG-GED--FDNYVRRFYSL 85 (293)
Q Consensus 9 ~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~-~~~--~~~~~~~~~~~ 85 (293)
+.+.||++++||+|... . ..+++.+.++..++|.|+++||+++.+.... ..+ ..+..+.+.+
T Consensus 22 ~~~mmki~~iSD~H~~~-------~-------~l~~~l~~~~~~~~d~vi~~GDl~~~g~~~~~~~~~~~~~~~~~l~~- 86 (208)
T 1su1_A 22 SNAMMKLMFASDIHGSL-------P-------ATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNE- 86 (208)
T ss_dssp ---CCEEEEECCCTTBH-------H-------HHHHHHHHHHHHTCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHT-
T ss_pred ccccEEEEEEEcCCCCH-------H-------HHHHHHHHHHhcCCCEEEECCCccccCcccccccccCHHHHHHHHHh-
Confidence 34458999999999721 1 1233444555578999999999998765211 111 2333444443
Q ss_pred hcCCCCceEEEecCCCCCC
Q psy2930 86 FSTPDGTELHVVPGNHDMG 104 (293)
Q Consensus 86 ~~~~~~~~~~~v~GNHD~~ 104 (293)
.+.|+++|+||||..
T Consensus 87 ----~~~~v~~V~GNHD~~ 101 (208)
T 1su1_A 87 ----VAHKVIAVRGNCDSE 101 (208)
T ss_dssp ----TGGGEEECCCTTCCH
T ss_pred ----cCCceEEEECCCchH
Confidence 236899999999973
No 30
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2
Probab=99.10 E-value=1.4e-09 Score=102.03 Aligned_cols=89 Identities=11% Similarity=-0.024 Sum_probs=46.7
Q ss_pred CCCceEEEEEecCCcCCCCCCchhHH-----HHhHHHHHHHHHHHHHhcCCC-EEEEcCccCCCCccCChhhHHHHHHHH
Q psy2930 9 SINNIKAIFIADTHLLGPFRGHWFDK-----LRREWQMYKTFQTAVALHQPE-HIFVLGDLLDEGQYVGGEDFDNYVRRF 82 (293)
Q Consensus 9 ~~~~~ri~~iSD~H~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~pd-~vi~~GDl~~~~~~~~~~~~~~~~~~~ 82 (293)
....++|+++||+|...... .+... .. .......+.+.+++..|| +++.+||+++.....+........+.+
T Consensus 26 ~~~~l~Il~~~D~H~~~~~~-~~~~~~~~~~~g-g~~~~~~~v~~~r~~~~~~l~l~~GD~~~gs~~~~~~~~~~~~~~l 103 (552)
T 2z1a_A 26 GGFTLTLVHTNDTHAHLEPV-ELTLSGEKTPVG-GVARRVALFDRVWARAKNPLFLDAGDVFQGTLYFNQYRGLADRYFM 103 (552)
T ss_dssp --CEEEEEEECCCTTCCSCE-EEECSSSEEEEC-CHHHHHHHHHHHHHHSSSEEEEECSCCSSSSHHHHHHTTHHHHHHH
T ss_pred CCeeEEEEEEcccccCcccc-cccCcccccccC-CHHHHHHHHHHHHhhCCCEEEEeCCCCCCCcHHHHHhCCcHHHHHH
Confidence 44569999999999642211 00000 00 001122344455566787 889999999864321111112223333
Q ss_pred HhhhcCCCCceEEEecCCCCCCC
Q psy2930 83 YSLFSTPDGTELHVVPGNHDMGF 105 (293)
Q Consensus 83 ~~~~~~~~~~~~~~v~GNHD~~~ 105 (293)
.. + +. -++++||||+.+
T Consensus 104 n~-l----g~-d~~~lGNHEfd~ 120 (552)
T 2z1a_A 104 HR-L----RY-RAMALGNHEFDL 120 (552)
T ss_dssp HH-T----TC-CEEECCGGGGTT
T ss_pred Hh-c----CC-CccccccccccC
Confidence 33 2 22 378999999865
No 31
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Probab=99.10 E-value=4e-09 Score=98.16 Aligned_cols=87 Identities=15% Similarity=0.092 Sum_probs=44.8
Q ss_pred CCceEEEEEecCCcCCCCCC--ch-hHHHHhHHHHHHHHHHHHHhcCC-CEEEEcCccCCCCccCChhhHHHHHHHHHhh
Q psy2930 10 INNIKAIFIADTHLLGPFRG--HW-FDKLRREWQMYKTFQTAVALHQP-EHIFVLGDLLDEGQYVGGEDFDNYVRRFYSL 85 (293)
Q Consensus 10 ~~~~ri~~iSD~H~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~p-d~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~ 85 (293)
...++|+++||+|....... .+ +.++. .+.+.+.+.....+| ++++.+||++...............+.+..
T Consensus 6 ~~~l~Il~~~D~H~~~~~~~~~~~G~~~~~---~~v~~~r~~~~~~~~~~lvl~~GD~~~g~~~~~~~~~~~~~~~ln~- 81 (516)
T 1hp1_A 6 TYKITVLHTNDHHGHFWRNEYGEYGLAAQK---TLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNL- 81 (516)
T ss_dssp CEEEEEEEECCCTTCCSCCTTSCCCHHHHH---HHHHHHHHHHHHHTCEEEEEECSCCSSSCHHHHTTTTHHHHHHHHH-
T ss_pred ceEEEEEEecccccCccCCCCCCcCHHHHH---HHHHHHHHhhhccCCCEEEEeCCccCCCcchhhhcCCcHHHHHHhc-
Confidence 34699999999998532211 00 11111 122222222112246 799999999875331110111222333333
Q ss_pred hcCCCCceEEEecCCCCCCC
Q psy2930 86 FSTPDGTELHVVPGNHDMGF 105 (293)
Q Consensus 86 ~~~~~~~~~~~v~GNHD~~~ 105 (293)
+ + +-++++||||+.+
T Consensus 82 l----g-~d~~~~GNHEfd~ 96 (516)
T 1hp1_A 82 V----G-YDAMAIGNHEFDN 96 (516)
T ss_dssp H----T-CCEEECCGGGGSS
T ss_pred c----C-CCEEeeccccccC
Confidence 2 2 2378999999965
No 32
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=99.08 E-value=1.4e-10 Score=96.09 Aligned_cols=68 Identities=19% Similarity=0.312 Sum_probs=42.7
Q ss_pred CceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHh-cCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCC
Q psy2930 11 NNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL-HQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTP 89 (293)
Q Consensus 11 ~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (293)
+.+|++++||+|.. ... + .++.+.+.. .++|.|+++||+++.|... .+.+ +.+.
T Consensus 11 ~~~~i~visDiHg~-------~~~------l-~~~l~~~~~~~~~d~~i~~GD~~~~g~~~--------~~~~-~~l~-- 65 (221)
T 1g5b_A 11 KYRNIWVVGDLHGC-------YTN------L-MNKLDTIGFDNKKDLLISVGDLVDRGAEN--------VECL-ELIT-- 65 (221)
T ss_dssp GCSCEEEECCCTTC-------HHH------H-HHHHHHHTCCTTTCEEEECSCCSSSSSCH--------HHHH-GGGG--
T ss_pred CCceEEEEEcCCCC-------HHH------H-HHHHHHccCCCCCCEEEEeCCccCCCCCh--------HHHH-HHHh--
Confidence 45899999999951 111 1 122222332 3689999999999977521 1122 2221
Q ss_pred CCceEEEecCCCCCC
Q psy2930 90 DGTELHVVPGNHDMG 104 (293)
Q Consensus 90 ~~~~~~~v~GNHD~~ 104 (293)
..++++|+||||..
T Consensus 66 -~~~~~~v~GNhd~~ 79 (221)
T 1g5b_A 66 -FPWFRAVRGNHEQM 79 (221)
T ss_dssp -STTEEECCCHHHHH
T ss_pred -cCCEEEEccCcHHH
Confidence 24799999999963
No 33
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=99.03 E-value=2.2e-09 Score=97.04 Aligned_cols=203 Identities=15% Similarity=0.112 Sum_probs=105.7
Q ss_pred CCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHH-----------hcCCCEEEEcCccCCCCccCCh------
Q psy2930 10 INNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVA-----------LHQPEHIFVLGDLLDEGQYVGG------ 72 (293)
Q Consensus 10 ~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~pd~vi~~GDl~~~~~~~~~------ 72 (293)
.+..+++++||+|+|+..... ... .+.|.+++. ..+...||++||+++...+..+
T Consensus 198 ~~~~~ialVSGL~igs~~~~~-~~~-------~~ll~d~L~G~~g~~~~~~~as~I~rlIIAGn~v~~~~~~~e~~~~~~ 269 (476)
T 3e0j_A 198 DTDRFVLLVSGLGLGGGGGES-LLG-------TQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAK 269 (476)
T ss_dssp SSCCEEEEECCCCBTSSCHHH-HHH-------HHHHHHHHHTCSSCHHHHHHHTTEEEEEEESCSBCC------------
T ss_pred CCCCEEEEECCcccCCCcccc-hHH-------HHHHHHHHcCCCCCccccchhhceeEEEEECCccccccccchhhhhhh
Confidence 455799999999998764210 111 122333332 2478999999999996421110
Q ss_pred -----------hhHHHHHHHHHhhhcCCCCceEEEecCCCCCCCCC-CCCchhHHHHHHH--h----CCCCcceEEeCCE
Q psy2930 73 -----------EDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHY-RLHPYLNDRFSRA--F----NSSMVKLLSIKGS 134 (293)
Q Consensus 73 -----------~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~~~~-~~~~~~~~~~~~~--~----~~~~~~~~~~~~~ 134 (293)
+++.. ++.|..-+ ...+||.++|||||-.... ...+.....|... + .-.+++.+.++|+
T Consensus 270 y~~~~~~~~~~~~~~~-ld~~L~~l--~~~i~V~lmPG~~DP~~~~lPQqplh~~lfp~s~~~~~~~~vtNP~~~~i~G~ 346 (476)
T 3e0j_A 270 YLTKKTQAASVEAVKM-LDEILLQL--SASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGV 346 (476)
T ss_dssp -CHHHHHHHHHHHHHH-HHHHHHHH--HTTSCEEEECCTTSSSCSSSSCCCCCTTSCHHHHTSTTEEECCSSEEEEETTE
T ss_pred ccccccchhhHHHHHH-HHHHHHhc--ccCceEEecCCCCCcccccCCCCCcCHHHhhhhhhcCccEEeCCCeEEEECCE
Confidence 12222 23332222 3689999999999975321 1111111222221 1 1235789999999
Q ss_pred EEEEEeceeccCC-CCCCCchhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCCcCCCCCCCCCCCchhhh
Q psy2930 135 YFVLINSMALEGD-GCFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIE 213 (293)
Q Consensus 135 ~~i~lds~~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~~ 213 (293)
+|++..+....-- .+.. .+..++.++..|+.. |..|.......|.+.. +
T Consensus 347 ~~LgtsGqnidDi~ky~~---~~~~l~~me~~Lkwr----------------------HlAPTaPdTl~~yP~~-----~ 396 (476)
T 3e0j_A 347 RFLGTSGQNVSDIFRYSS---MEDHLEILEWTLRVR----------------------HISPTAPDTLGCYPFY-----K 396 (476)
T ss_dssp EEEECSSHHHHHHHHHSC---CCCHHHHHHHHHHBT----------------------CSCTTSCCC------C-----C
T ss_pred EEEEECCCCHHHHHhcCC---CCCHHHHHHHHHHHh----------------------ccCCCCCCceeeccCC-----C
Confidence 9999633222100 0000 112455555555432 4333221212222210 0
Q ss_pred hcccccccccccCHHHHHHHHhhcCccEEEecCCCCCceeec--cC-CCeeEEecccee
Q psy2930 214 KRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKYH--AY-GKVHEYTVPSFS 269 (293)
Q Consensus 214 ~~~~~~~~~~~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~~--~~-~~~~~~~~~s~~ 269 (293)
++ +.++ +.-|+++|+||.|....... .. ..+..+++|+|+
T Consensus 397 ~D------pfVi----------~~~PhVyf~Gnq~~f~t~~~~~~~~~~vrLv~VP~Fs 439 (476)
T 3e0j_A 397 TD------PFIF----------PECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFS 439 (476)
T ss_dssp SC------TTSC----------SSCCSEEEEEEESSCEEEEEECSSCCEEEEEEEECHH
T ss_pred CC------ceee----------cCCCcEEEeCCCCccceeEEecCCCCeEEEEEcCCcC
Confidence 00 1222 11599999999999987542 22 258999999987
No 34
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A*
Probab=98.97 E-value=1.6e-08 Score=93.94 Aligned_cols=91 Identities=15% Similarity=0.215 Sum_probs=47.2
Q ss_pred CCceEEEEEecCCcCCCCCCc-hhHH-HH--hHHHHHHHHHHHHHhcCCCEEEE-cCccCCCCccCChhhHHHHHHHHHh
Q psy2930 10 INNIKAIFIADTHLLGPFRGH-WFDK-LR--REWQMYKTFQTAVALHQPEHIFV-LGDLLDEGQYVGGEDFDNYVRRFYS 84 (293)
Q Consensus 10 ~~~~ri~~iSD~H~~~~~~~~-~~~~-~~--~~~~~~~~~~~~~~~~~pd~vi~-~GDl~~~~~~~~~~~~~~~~~~~~~ 84 (293)
...++|+++||+|..-..... +... .. -.......+.+.+++..|+.+++ +||+++............ +.+
T Consensus 4 ~~~l~Il~tnD~Hg~~~~~~~~~~~~~~~~~gG~a~la~~i~~~r~~~~~~llldaGD~~~g~~~~~~~~g~~----~~~ 79 (509)
T 3ive_A 4 AKDVTIIYTNDLHAHVEPYKVPWIADGKRDIGGWANITTLVKQEKAKNKATWFFDAGDYFTGPYISSLTKGKA----IID 79 (509)
T ss_dssp CEEEEEEEECCCTTCCSCBCCTTSGGGTSCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSSSSHHHHTTTTHH----HHH
T ss_pred ceEEEEEEEccccCCccCcccccccCCCcCcCCHHHHHHHHHHHHhcCCCeEEEECCCCCCCchhhhhcCChH----HHH
Confidence 456999999999954322110 0000 00 00112233455556678888877 999998532111011122 223
Q ss_pred hhcCCCCceEEEecCCCCCCCC
Q psy2930 85 LFSTPDGTELHVVPGNHDMGFH 106 (293)
Q Consensus 85 ~~~~~~~~~~~~v~GNHD~~~~ 106 (293)
.+. ..+.. ++++||||+.++
T Consensus 80 ~ln-~lg~D-~~tlGNHEfd~G 99 (509)
T 3ive_A 80 IMN-TMPFD-AVTIGNHEFDHG 99 (509)
T ss_dssp HHT-TSCCS-EECCCGGGGTTC
T ss_pred HHH-hcCCc-EEeecccccccC
Confidence 332 22333 678999998653
No 35
>3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp}
Probab=98.94 E-value=3.2e-08 Score=92.25 Aligned_cols=92 Identities=12% Similarity=0.052 Sum_probs=45.9
Q ss_pred CCCCceEEEEEecCCcCCCCCCchhH-H--HHhHHHHHHHHHHHHHhcCCC-EEEEcCccCCCCccCC-h----hhHHHH
Q psy2930 8 ESINNIKAIFIADTHLLGPFRGHWFD-K--LRREWQMYKTFQTAVALHQPE-HIFVLGDLLDEGQYVG-G----EDFDNY 78 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~pd-~vi~~GDl~~~~~~~~-~----~~~~~~ 78 (293)
.+.+.++|+++||+|....... +.. . ..-......++.+.+++..|+ +++.+||+++...... . ......
T Consensus 15 ~~~~~l~Il~tnD~Hg~~~~~~-~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~gs~~~~~~~~~~~~~~~~ 93 (527)
T 3qfk_A 15 FQGSNIAFYVVSDVHGYIFPTD-FTSRNQYQPMGLLLANHVIEQDRRQYDQSFKIDNGDFLQGSPFCNYLIAHSGSSQPL 93 (527)
T ss_dssp ---CEEEEEEECCCTTCCSSCC-SSSTTCCCSCSHHHHHHHHHHHHTTSSEEEEEECSCCSSSSHHHHHHHHTTCSSHHH
T ss_pred cCCCcEEEEEEeccCCCccCcc-cccCCCcCCCcHHHHHHHHHHHHhcCCCEEEEECCCcCCCcHHHHHHhhcccCcchH
Confidence 4557899999999996432111 000 0 000001122344445556676 6777999998543110 0 001233
Q ss_pred HHHHHhhhcCCCCceEEEecCCCCCCCC
Q psy2930 79 VRRFYSLFSTPDGTELHVVPGNHDMGFH 106 (293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~v~GNHD~~~~ 106 (293)
.+.+.. .+.. ++++||||+.++
T Consensus 94 ~~~ln~-----lg~D-~~t~GNHefd~G 115 (527)
T 3qfk_A 94 VDFYNR-----MAFD-FGTLGNHEFNYG 115 (527)
T ss_dssp HHHHHH-----TCCC-EECCCGGGGTTC
T ss_pred HHHHHh-----cCCc-EEeccccccccC
Confidence 333333 2333 678999998653
No 36
>4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A*
Probab=98.90 E-value=8.8e-08 Score=89.63 Aligned_cols=88 Identities=11% Similarity=0.019 Sum_probs=46.3
Q ss_pred CceEEEEEecCCcCCCCCCchhH-------HHHhHHHHHHHHHHHHHhcCC-CEEEEcCccCCCCccCChhhHHHHHHHH
Q psy2930 11 NNIKAIFIADTHLLGPFRGHWFD-------KLRREWQMYKTFQTAVALHQP-EHIFVLGDLLDEGQYVGGEDFDNYVRRF 82 (293)
Q Consensus 11 ~~~ri~~iSD~H~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~p-d~vi~~GDl~~~~~~~~~~~~~~~~~~~ 82 (293)
.+++|+++||+|........... ... ...-...+.+.+++..| +++|.+||+++.....+........+.+
T Consensus 24 ~~l~Il~~nD~Hg~~~~~~~~~~~~~~~~~~~g-G~a~l~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l 102 (546)
T 4h2g_A 24 WELTILHTNDVHSRLEQTSEDSSKCVDASRCMG-GVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFM 102 (546)
T ss_dssp EEEEEEEECCCTTCCSCBCTTSSBCSSGGGCBC-CHHHHHHHHHHHHHHCSSEEEEECSCCSSSSHHHHHHTTHHHHHHH
T ss_pred eEEEEEEecccccCCcccccccccccccccccC-CHHHHHHHHHHHHhhCCCEEEEECCccCCCchhhhhhCChHHHHHH
Confidence 45999999999964322110000 000 00112233444555556 6999999999965421111112333333
Q ss_pred HhhhcCCCCceEEEecCCCCCCC
Q psy2930 83 YSLFSTPDGTELHVVPGNHDMGF 105 (293)
Q Consensus 83 ~~~~~~~~~~~~~~v~GNHD~~~ 105 (293)
..+ +.. ++++||||+.+
T Consensus 103 n~l-----g~d-~~~~GNHEfd~ 119 (546)
T 4h2g_A 103 NAL-----RYD-AMALGNHEFDN 119 (546)
T ss_dssp HHH-----TCS-EEECCGGGGTT
T ss_pred Hhc-----CCc-EEeccCccccc
Confidence 332 223 68899999864
No 37
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A
Probab=98.86 E-value=6.9e-08 Score=90.48 Aligned_cols=54 Identities=13% Similarity=0.080 Sum_probs=29.2
Q ss_pred HHHHHHhc--C--CC-EEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCCC
Q psy2930 45 FQTAVALH--Q--PE-HIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGF 105 (293)
Q Consensus 45 ~~~~~~~~--~--pd-~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~~ 105 (293)
+.+.+++. + || +++.+||+++..............+.+ ..+ +.++ ++ ||||+.+
T Consensus 110 ~v~~~r~~~~~~gpd~Lll~~GD~~~gs~~~~~~~g~~~~~~l-n~l----g~d~-~~-GNHEfd~ 168 (562)
T 2wdc_A 110 LIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQ-NLV----GVDH-MV-SHWEWTL 168 (562)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCCSSSSHHHHHHTTHHHHHHH-HHH----TCCE-EC-CSGGGGG
T ss_pred HHHHHHhhhhcCCCCEEEEeCCCCCCcchhhhhhCCHHHHHHH-Hhh----CCcE-Ee-cchhccc
Confidence 44444444 4 88 899999999854311100012223333 333 3454 47 9999854
No 38
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A {Haemophilus influenzae} PDB: 3zu0_A*
Probab=98.84 E-value=2.6e-07 Score=86.96 Aligned_cols=88 Identities=10% Similarity=0.057 Sum_probs=45.3
Q ss_pred CceEEEEEecCCcCCCCCC-ch-hH------HHHhHHHHHHHHHHHHHhcCCC-EEEEcCccCCCCccCChhhHHHHHHH
Q psy2930 11 NNIKAIFIADTHLLGPFRG-HW-FD------KLRREWQMYKTFQTAVALHQPE-HIFVLGDLLDEGQYVGGEDFDNYVRR 81 (293)
Q Consensus 11 ~~~ri~~iSD~H~~~~~~~-~~-~~------~~~~~~~~~~~~~~~~~~~~pd-~vi~~GDl~~~~~~~~~~~~~~~~~~ 81 (293)
-.++|++++|+|..-.... .+ .. ... ...-..++.+.+++..++ ++|.+||++..........-....+.
T Consensus 11 ~~l~Il~tnD~Hg~~~~~~~~~~~~~~~~~~~~g-G~arla~~i~~~r~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ 89 (579)
T 3ztv_A 11 VELSILHINDHHSYLEPHETRINLNGQQTKVDIG-GFSAVNAKLNKLRKKYKNPLVLHAGDAITGTLYFTLFGGSADAAV 89 (579)
T ss_dssp EEEEEEEECCCTTCCSCEEEEEEETTEEEEEEEC-CHHHHHHHHHHHHHHSSSEEEEECSCCSCSSHHHHTTTTHHHHHH
T ss_pred eEEEEEEeCccccCccCCccccccCCcccccccC-CHHHHHHHHHHHHhhCCCEEEEeCCCCCCCceeeeecCCHHHHHH
Confidence 3599999999995432211 00 00 000 011122344445555666 88999999986532111111223333
Q ss_pred HHhhhcCCCCceEEEecCCCCCCC
Q psy2930 82 FYSLFSTPDGTELHVVPGNHDMGF 105 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~v~GNHD~~~ 105 (293)
+.. + +.. ++++||||+.+
T Consensus 90 ln~-l----g~D-~~tlGNHEfd~ 107 (579)
T 3ztv_A 90 MNA-G----NFH-YFTLGNHEFDA 107 (579)
T ss_dssp HHH-H----TCS-EEECCSGGGTT
T ss_pred HHh-c----CcC-eeecccccccc
Confidence 333 2 222 68899999864
No 39
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 1.90A {Candida albicans} SCOP: d.114.1.1 d.159.1.2
Probab=98.63 E-value=2.6e-07 Score=86.42 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=50.3
Q ss_pred CCCCCCCCCCceEEEEEecCCcCCCCCC---chhHHHHhHHHHHHHHHHHHHhcCCC-EEEEcCccCCCCccCChh--hH
Q psy2930 2 NWPASPESINNIKAIFIADTHLLGPFRG---HWFDKLRREWQMYKTFQTAVALHQPE-HIFVLGDLLDEGQYVGGE--DF 75 (293)
Q Consensus 2 ~w~~~~~~~~~~ri~~iSD~H~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~pd-~vi~~GDl~~~~~~~~~~--~~ 75 (293)
.-|..+.....++|++++|+|....... .+...+..-..+...+.+..++.+|+ +++.+||++.+....... .-
T Consensus 5 s~p~~~~~~~~l~ILhtnD~Hg~~~~~~~~~~~~~~~Gg~a~l~~~i~~~~~~~~~~~LlldaGD~~~Gs~~~~~~~~~g 84 (557)
T 3c9f_A 5 SFPHRNLTWNDINFVHTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAHSRNQDLLLIDSGDRHDGNGLSDITSPNG 84 (557)
T ss_dssp CCCBCCCCCCSEEEEEECCCTTCTTCCSSCGGGCCCHHHHHHHHHHHHHHHHHTTCEEEEEECSCCCSSCHHHHSSSSTT
T ss_pred cCCCCCCCceEEEEEEEcccccCccCcccccccccccchHHHHHHHHHHHHHhcCCCEEEEecCCCCCCccchhhcccCC
Confidence 3455456667799999999998543211 11000110011323333333346788 479999999753211000 00
Q ss_pred HHHHHHHHhhhcCCCCceEEEecCCCCCCCC
Q psy2930 76 DNYVRRFYSLFSTPDGTELHVVPGNHDMGFH 106 (293)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~v~GNHD~~~~ 106 (293)
....+.+ .. .+.. ++++||||+.++
T Consensus 85 ~~~~~~l-n~----lg~D-a~tlGNHEfD~G 109 (557)
T 3c9f_A 85 LKSTPIF-IK----QDYD-LLTIGNHELYLW 109 (557)
T ss_dssp TTTHHHH-TT----SCCS-EECCCGGGSSSH
T ss_pred HHHHHHH-Hh----cCCC-EEeecchhcccc
Confidence 1112222 22 2333 678899999753
No 40
>4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens}
Probab=98.35 E-value=5.2e-05 Score=70.57 Aligned_cols=85 Identities=11% Similarity=0.106 Sum_probs=43.3
Q ss_pred ceEEEEEecCCcCCCCCC----ch------hHHHHhHHHHHHHHHHHHHhcCCC-EEEEcCccCCCCccCChhhHHHHHH
Q psy2930 12 NIKAIFIADTHLLGPFRG----HW------FDKLRREWQMYKTFQTAVALHQPE-HIFVLGDLLDEGQYVGGEDFDNYVR 80 (293)
Q Consensus 12 ~~ri~~iSD~H~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~~~~pd-~vi~~GDl~~~~~~~~~~~~~~~~~ 80 (293)
+++|++++|+|..-.... .. ..-+. ++ .++.+.+++..|+ ++|.+||++......+...-....+
T Consensus 3 ~LtILhtnD~Hg~l~~~~~~~~~~~~~~~~~GG~a---rl-at~i~~~r~~~~n~llldaGD~~qGs~~~~~~~g~~~i~ 78 (530)
T 4h1s_A 3 ELTILHTNDVHSRLEQTSEDSSKCVNASRCMGGVA---RL-FTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAH 78 (530)
T ss_dssp EEEEEEECCCTTCCSCBCTTSSBCCSTTSCBCCHH---HH-HHHHHHHHHHCSSEEEEECSCCSCSSHHHHHHTTHHHHH
T ss_pred EEEEEEEcccccCCcccCcccccccccccccCcHH---HH-HHHHHHHHhhCcCeEEEEeCCcccchHHHHHhCChHHHH
Confidence 379999999996432110 00 00011 11 2233344445555 6777999998644221111122222
Q ss_pred HHHhhhcCCCCceEEEecCCCCCCCC
Q psy2930 81 RFYSLFSTPDGTELHVVPGNHDMGFH 106 (293)
Q Consensus 81 ~~~~~~~~~~~~~~~~v~GNHD~~~~ 106 (293)
.+ ..+ +.- ++++||||+.++
T Consensus 79 ~m-N~l----gyD-a~~lGNHEFd~G 98 (530)
T 4h1s_A 79 FM-NAL----RYD-AMALGNHEFDNG 98 (530)
T ss_dssp HH-HHT----TCC-EEECCGGGGTTT
T ss_pred HH-hcc----CCC-EEEEchhhhccC
Confidence 23 333 211 789999999764
No 41
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.35 E-value=3e-06 Score=77.91 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=36.9
Q ss_pred cCHHHHHHHHhhcCccEEEecCCCCCceee-ccCC-CeeEEeccceeccCCCCCceEEEEEecCCc
Q psy2930 225 ISKESTDMLLDYLNPRLVIDGHTHNGCHKY-HAYG-KVHEYTVPSFSWRNKNNPSFLMGYVVENSS 288 (293)
Q Consensus 225 l~~~~~~~ll~~~~~~lvl~GH~H~~~~~~-~~~~-~~~~~~~~s~~~~~~~~p~f~~~~~~~~~~ 288 (293)
.+.+...+.+++.++++++.||.+...-+. ...+ -++++.+|.-|...++. -.++.|..+++
T Consensus 384 fg~~~~~~fl~~~~~~~iir~H~~~~~g~~~~~~~~~~tvfsa~~y~~~~~n~--~~~~~~~~~~~ 447 (477)
T 1wao_1 384 FGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNK--ASYIHLQGSDL 447 (477)
T ss_dssp ECHHHHHHHHHHTTCCEEEECCSCCTEEEEEEGGGTEEEEBCCTTTTSSSCCE--EEEEEEETTEE
T ss_pred ECHHHHHHHHHHcCCeEEEECCCCCcCCeEEecCCeEEEEeCCcccccCCCcc--EEEEEEECCCC
Confidence 456778899999999999999999875432 1121 23444444434333332 34455544433
No 42
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=98.31 E-value=2.5e-05 Score=68.38 Aligned_cols=57 Identities=9% Similarity=-0.023 Sum_probs=30.5
Q ss_pred CceEEEEEecCCcCCCCCCchhHHHH--hHHHHHHHHHHHHHhcCCC-EEEEcCccCCCC
Q psy2930 11 NNIKAIFIADTHLLGPFRGHWFDKLR--REWQMYKTFQTAVALHQPE-HIFVLGDLLDEG 67 (293)
Q Consensus 11 ~~~ri~~iSD~H~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~pd-~vi~~GDl~~~~ 67 (293)
-.++|++++|+|..-.......+... -...-..++.+.+++..++ ++|.+||++.+.
T Consensus 7 ~~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~~n~llld~GD~~qGs 66 (339)
T 3jyf_A 7 VDLRIMETTDLHSNMMDFDYYKDAATEKFGLVRTASLIEQARAEVKNSVLVDNGDVIQGS 66 (339)
T ss_dssp EEEEEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHTCSCEEEEECSCCSSSS
T ss_pred eeEEEEEEeeCCCCcccccccCCCccccCCHHHHHHHHHHHHhhCCCEEEEECCCCCCCc
Confidence 45899999999974332110000000 0001122344445555565 778999999743
No 43
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=98.26 E-value=2.3e-05 Score=68.77 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=29.7
Q ss_pred CceEEEEEecCCcCCCCCCchhHHHH--hHHHHHHHHHHHHHhcCCC-EEEEcCccCCCC
Q psy2930 11 NNIKAIFIADTHLLGPFRGHWFDKLR--REWQMYKTFQTAVALHQPE-HIFVLGDLLDEG 67 (293)
Q Consensus 11 ~~~ri~~iSD~H~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~pd-~vi~~GDl~~~~ 67 (293)
-.++|++++|+|..-.......+... -...-..++.+.+++..++ ++|.+||++.+.
T Consensus 10 ~~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~~~~llld~GD~~qGs 69 (341)
T 3gve_A 10 VHLSILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQNPNTLLVDNGDLIQGN 69 (341)
T ss_dssp EEEEEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHHCSSEEEEECSCCSCSS
T ss_pred eEEEEEEEeccCCCccCccccCCCccccCCHHHHHHHHHHHHhcCCCEEEEecCccCCCc
Confidence 35899999999975332110000000 0001112334444555555 667899999754
No 44
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=98.16 E-value=1.6e-06 Score=73.31 Aligned_cols=66 Identities=26% Similarity=0.359 Sum_probs=41.5
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCC-CEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCC
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQP-EHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDG 91 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-d~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (293)
+|++++||+|. .. .. + .++.+.+...++ |.+|++||+++.|... . +.++.+.+
T Consensus 19 ~~i~visDiHg-~~------~~------l-~~~l~~~~~~~~~d~ii~~GD~vd~g~~~--~---~~l~~l~~------- 72 (262)
T 2qjc_A 19 GRVIIVGDIHG-CR------AQ------L-EDLLRAVSFKQGSDTLVAVGDLVNKGPDS--F---GVVRLLKR------- 72 (262)
T ss_dssp SCEEEECCCTT-CH------HH------H-HHHHHHHTCCTTTSEEEECSCCSSSSSCH--H---HHHHHHHH-------
T ss_pred CeEEEEeCCCC-CH------HH------H-HHHHHHHhccCCCCEEEEecCCCCCCCCH--H---HHHHHHHH-------
Confidence 49999999994 11 11 1 223333344455 9999999999977521 1 22332322
Q ss_pred ceEEEecCCCCCC
Q psy2930 92 TELHVVPGNHDMG 104 (293)
Q Consensus 92 ~~~~~v~GNHD~~ 104 (293)
.++++|+||||..
T Consensus 73 ~~~~~v~GNHd~~ 85 (262)
T 2qjc_A 73 LGAYSVLGNHDAK 85 (262)
T ss_dssp HTCEECCCHHHHH
T ss_pred CCCEEEeCcChHH
Confidence 3689999999963
No 45
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=98.14 E-value=1.1e-06 Score=74.94 Aligned_cols=67 Identities=27% Similarity=0.488 Sum_probs=41.7
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHh-cCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCC
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL-HQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDG 91 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (293)
||++++||+|.. ... + ..+.+.+.. .++|.++++||+++.|... .+.++.+.++ +
T Consensus 1 M~i~vigDiHG~-------~~~------l-~~ll~~~~~~~~~d~~v~lGD~vdrG~~s-----~~~l~~l~~l-----~ 56 (280)
T 2dfj_A 1 MATYLIGDVHGC-------YDE------L-IALLHKVEFTPGKDTLWLTGDLVARGPGS-----LDVLRYVKSL-----G 56 (280)
T ss_dssp -CEEEECCCCSC-------HHH------H-HHHHHHTTCCTTTCEEEECSCCSSSSSCH-----HHHHHHHHHT-----G
T ss_pred CeEEEEecCCCC-------HHH------H-HHHHHHhCCCCCCCEEEEeCCcCCCCCcc-----HHHHHHHHhC-----C
Confidence 689999999961 111 1 112222232 3679999999999987621 1223333332 2
Q ss_pred ceEEEecCCCCC
Q psy2930 92 TELHVVPGNHDM 103 (293)
Q Consensus 92 ~~~~~v~GNHD~ 103 (293)
.++++|.||||.
T Consensus 57 ~~~~~v~GNHe~ 68 (280)
T 2dfj_A 57 DSVRLVLGNHDL 68 (280)
T ss_dssp GGEEECCCHHHH
T ss_pred CceEEEECCCcH
Confidence 379999999996
No 46
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A
Probab=98.07 E-value=6.3e-05 Score=64.86 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=37.3
Q ss_pred cCHHHHHHHHhhcCccEEEecCCCCCce--eeccCCCeeEEeccceeccCCCCCceEEEEEecCCc
Q psy2930 225 ISKESTDMLLDYLNPRLVIDGHTHNGCH--KYHAYGKVHEYTVPSFSWRNKNNPSFLMGYVVENSS 288 (293)
Q Consensus 225 l~~~~~~~ll~~~~~~lvl~GH~H~~~~--~~~~~~~~~~~~~~s~~~~~~~~p~f~~~~~~~~~~ 288 (293)
.+.+...+.|++.+.++++=||.=...- ..+...-++++.+|.-|...+|.. .++.+.++.+
T Consensus 231 fg~~~~~~fl~~n~l~~iiR~Hq~~~~Gy~~~~~~~~iTvfSapnY~~~~~N~~--a~~~~~~~~~ 294 (315)
T 3h63_A 231 FGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKA--SYIHLQGSDL 294 (315)
T ss_dssp ECHHHHHHHHHHHTCSEEEECCSCCTTSEEEEGGGTEEEECCCTTGGGTSCCCE--EEEEEETTEE
T ss_pred ECHHHHHHHHHHcCCcEEEEeceeecCCeEEecCCeEEEEECCcccCCCCCccE--EEEEEECCCC
Confidence 4566889999999999999999975432 222221345555555554444433 4445554444
No 47
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Probab=97.95 E-value=1.4e-05 Score=70.13 Aligned_cols=48 Identities=21% Similarity=0.404 Sum_probs=30.4
Q ss_pred CCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 53 QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 53 ~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
++|.++++||+++.|.. ..+....+.++..... ..+.+++++.||||.
T Consensus 105 ~~d~~v~lGD~vdrG~~--s~evl~~l~~l~~~~~-~~~~~v~~v~GNHE~ 152 (342)
T 2z72_A 105 GEGHMVMTGDIFDRGHQ--VNEVLWFMYQLDQQAR-DAGGMVHLLMGNHEQ 152 (342)
T ss_dssp TTCEEEECSCCSSSSSC--HHHHHHHHHHHHHHHH-HTTCEEEECCCHHHH
T ss_pred CCCEEEEECCCcCCCCC--HHHHHHHHHHHHHHHh-hCCCeEEEEecCCcH
Confidence 47999999999998763 2233333333321000 124579999999997
No 48
>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9
Probab=97.91 E-value=0.0004 Score=58.83 Aligned_cols=74 Identities=18% Similarity=0.134 Sum_probs=44.7
Q ss_pred ceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCC
Q psy2930 12 NIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDG 91 (293)
Q Consensus 12 ~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (293)
.|||++++|+|.. + + . ..+...+.+..++.++|++++.||....|.... ...++.+..+ +
T Consensus 4 ~m~ilf~GDv~G~-~--G--~------~~l~~~l~~lr~~~~~d~vi~Ngen~~gG~g~~----~~~~~~ln~~-----G 63 (281)
T 1t71_A 4 SIKFIFLGDVYGK-A--G--R------NIIKNNLAQLKSKYQADLVIVNAENTTHGKGLS----LKHYEFLKEA-----G 63 (281)
T ss_dssp CCEEEEECEEBHH-H--H--H------HHHHTTHHHHHHHHTCSEEEEECTBTTTTSSCC----HHHHHHHHHH-----T
T ss_pred eEEEEEECCcCCh-H--H--H------HHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCcC----HHHHHHHHhc-----C
Confidence 5999999999952 1 1 0 112223333333447899999999887665333 2333334332 3
Q ss_pred ceEEEecCCCCCCCC
Q psy2930 92 TELHVVPGNHDMGFH 106 (293)
Q Consensus 92 ~~~~~v~GNHD~~~~ 106 (293)
.- .++.|||++.+.
T Consensus 64 ~D-a~TlGNHefD~g 77 (281)
T 1t71_A 64 VN-YITMGNHTWFQK 77 (281)
T ss_dssp CC-EEECCTTTTCCG
T ss_pred CC-EEEEccCcccCC
Confidence 33 677799999764
No 49
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=97.89 E-value=2.3e-05 Score=67.58 Aligned_cols=72 Identities=14% Similarity=0.226 Sum_probs=43.6
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
++++++||+|. . +. . +. .+.+.+....++.++++||+++.|..+ .+......++... .+-
T Consensus 50 ~~i~viGDIHG-----~-~~-~------L~-~ll~~~~~~~~~~~vflGD~VDRG~~s--~evl~lL~~lk~~----~p~ 109 (309)
T 2ie4_C 50 CPVTVCGDVHG-----Q-FH-D------LM-ELFRIGGKSPDTNYLFMGDYVDRGYYS--VETVTLLVALKVR----YRE 109 (309)
T ss_dssp SSEEEECCCTT-----C-HH-H------HH-HHHHHHCCTTTSCEEECSCCSSSSTTH--HHHHHHHHHHHHH----CTT
T ss_pred CCEEEEecCCC-----C-HH-H------HH-HHHHHcCCCCCCEEEEeCCccCCCCCh--HHHHHHHHHHHhh----CCC
Confidence 67999999997 1 11 1 11 122233334678889999999988632 2222333333222 133
Q ss_pred eEEEecCCCCCC
Q psy2930 93 ELHVVPGNHDMG 104 (293)
Q Consensus 93 ~~~~v~GNHD~~ 104 (293)
.++.+.||||..
T Consensus 110 ~v~~lrGNHE~~ 121 (309)
T 2ie4_C 110 RITILRGNHESR 121 (309)
T ss_dssp TEEECCCTTSST
T ss_pred cEEEEeCCCCHH
Confidence 689999999985
No 50
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Probab=97.80 E-value=4.1e-05 Score=66.60 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=42.7
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
+++.+++|+|. .+ .. + ..+.+.+.....+.++++||+++.|..+ .+......++... .+-
T Consensus 57 ~~i~viGDIHG------~~-~~------L-~~ll~~~g~~~~~~~vflGD~VDRG~~s--~evl~lL~~lk~~----~p~ 116 (330)
T 1fjm_A 57 APLKICGDIHG------QY-YD------L-LRLFEYGGFPPESNYLFLGDYVDRGKQS--LETICLLLAYKIK----YPE 116 (330)
T ss_dssp SSEEEECBCTT------CH-HH------H-HHHHHHHCSTTSSCEEECSCCSSSSSCH--HHHHHHHHHHHHH----STT
T ss_pred CceEEecCCCC------CH-HH------H-HHHHHHhCCCCcceEEeCCCcCCCCCCh--HHHHHHHHHhhhh----cCC
Confidence 57999999997 11 11 1 1122223334568899999999988632 2222222222221 133
Q ss_pred eEEEecCCCCCC
Q psy2930 93 ELHVVPGNHDMG 104 (293)
Q Consensus 93 ~~~~v~GNHD~~ 104 (293)
.++.+.||||..
T Consensus 117 ~v~~lrGNHE~~ 128 (330)
T 1fjm_A 117 NFFLLRGNHECA 128 (330)
T ss_dssp TEEECCCTTSSH
T ss_pred ceEEecCCchHh
Confidence 689999999973
No 51
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}
Probab=97.76 E-value=7.8e-05 Score=64.77 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=36.2
Q ss_pred ccCHHHHHHHHhhcCccEEEecCCCCCcee-e-ccCCCeeEEeccceeccCCCCCceEEEEEec
Q psy2930 224 CISKESTDMLLDYLNPRLVIDGHTHNGCHK-Y-HAYGKVHEYTVPSFSWRNKNNPSFLMGYVVE 285 (293)
Q Consensus 224 ~l~~~~~~~ll~~~~~~lvl~GH~H~~~~~-~-~~~~~~~~~~~~s~~~~~~~~p~f~~~~~~~ 285 (293)
..+.+...+.|++.+.++++=||.=...-+ . +...-++++.+|.-|.+.+| .-.++.+++
T Consensus 234 ~FG~~~~~~fl~~n~l~~IiR~Hq~~~~Gy~~~~~~~liTvfSapnYc~~~~N--~~a~~~i~~ 295 (335)
T 3icf_A 234 AFGPDITDRFLRNNKLRKIFRSHELRMGGVQFEQKGKLMTVFSAPNYCDSQGN--LGGVIHVVP 295 (335)
T ss_dssp EECHHHHHHHHHHTTCSEEEECSSCCTEEEEEEGGGTEEEECCCTTGGGTSCC--EEEEEEECT
T ss_pred eeCHHHHHHHHHHCCCeEEEEcCceecCeEEEecCCcEEEEECCcccCCCCCC--ceEEEEEec
Confidence 345678899999999999999999654322 1 22113455555554444433 234455555
No 52
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*
Probab=97.70 E-value=7.5e-05 Score=63.91 Aligned_cols=71 Identities=14% Similarity=0.256 Sum_probs=42.8
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
.+++++||+|. . +. . + .++.+.......+.++++||+++.|.. ..+.......++... +-
T Consensus 56 ~~i~viGDIHG-----~-~~-~------L-~~ll~~~g~~~~~~~vfLGD~VDrG~~--s~evl~lL~~lk~~~----p~ 115 (299)
T 3e7a_A 56 APLKICGDIHG-----Q-YY-D------L-LRLFEYGGFPPESNYLFLGDYVDRGKQ--SLETICLLLAYKIKY----PE 115 (299)
T ss_dssp SSEEEECBCTT-----C-HH-H------H-HHHHHHHCSTTSSCEEECSCCSSSSSC--HHHHHHHHHHHHHHS----TT
T ss_pred CCEEEEecCCC-----C-HH-H------H-HHHHHHhCCCCCccEEeCCcccCCCCC--cHHHHHHHHHHHhhC----CC
Confidence 47999999998 1 11 1 1 112222333456789999999998873 223333333332222 33
Q ss_pred eEEEecCCCCC
Q psy2930 93 ELHVVPGNHDM 103 (293)
Q Consensus 93 ~~~~v~GNHD~ 103 (293)
.++.+.||||.
T Consensus 116 ~v~~lrGNHE~ 126 (299)
T 3e7a_A 116 NFFLLRGNHEC 126 (299)
T ss_dssp TEEECCCTTSS
T ss_pred cEEEEecCchh
Confidence 58999999996
No 53
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A
Probab=97.58 E-value=0.00013 Score=63.85 Aligned_cols=72 Identities=22% Similarity=0.370 Sum_probs=43.5
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
.++++++|+|.. +.+ +.+ +.+.......+.++++||+++.|.. ..+.......+.... +-
T Consensus 70 ~pi~ViGDIHG~------~~d-------L~~-ll~~~g~~~~~~~vfLGD~VDRG~~--s~Evl~lL~~lk~~~----p~ 129 (357)
T 3ll8_A 70 APVTVCGDIHGQ------FFD-------LMK-LFEVGGSPANTRYLFLGDYVDRGYF--SIECVLYLWALKILY----PK 129 (357)
T ss_dssp SSEEEECCCTTC------HHH-------HHH-HHHHHCCTTTCCEEECSCCSSSSTT--HHHHHHHHHHHHHHC----TT
T ss_pred ccceeeccCCCC------HHH-------HHH-HHHhcCCCCCcEEEECCCccCCCcC--hHHHHHHHHHhhhhc----CC
Confidence 479999999981 111 111 2223333466889999999998863 222223333332222 23
Q ss_pred eEEEecCCCCCC
Q psy2930 93 ELHVVPGNHDMG 104 (293)
Q Consensus 93 ~~~~v~GNHD~~ 104 (293)
.++.+.||||..
T Consensus 130 ~v~llrGNHE~~ 141 (357)
T 3ll8_A 130 TLFLLRGNHECR 141 (357)
T ss_dssp TEEECCCTTSSH
T ss_pred cEEEEeCchhhh
Confidence 589999999963
No 54
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=97.50 E-value=0.0035 Score=52.14 Aligned_cols=101 Identities=15% Similarity=0.243 Sum_probs=53.9
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
|||+++.|+ +|.+. ........+.+++.. |++++-|.-...|...+ ...++.+.++ +.
T Consensus 1 m~ilfiGDi-~g~~G-----------~~~v~~~l~~lr~~~-d~vi~ngen~~~G~g~~----~~~~~~l~~~-----G~ 58 (252)
T 2z06_A 1 MRVLFIGDV-MAEPG-----------LRAVGLHLPDIRDRY-DLVIANGENAARGKGLD----RRSYRLLREA-----GV 58 (252)
T ss_dssp CEEEEECCB-CHHHH-----------HHHHHHHHHHHGGGC-SEEEEECTTTTTTSSCC----HHHHHHHHHH-----TC
T ss_pred CEEEEEEec-CCccc-----------HHHHHHHHHHHHhhC-CEEEEeCCCccCCCCcC----HHHHHHHHhC-----CC
Confidence 789999999 32221 112233344444455 88888777665565443 2323333332 44
Q ss_pred eEEEecCCCCCCCCCCCCchhHHHHHHH-------hCC----CCcceEEeCCEEEEEEec
Q psy2930 93 ELHVVPGNHDMGFHYRLHPYLNDRFSRA-------FNS----SMVKLLSIKGSYFVLINS 141 (293)
Q Consensus 93 ~~~~v~GNHD~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~i~lds 141 (293)
-+ ++.|||++.... ....+.+. +.. ..+.+++.+|.++-+++-
T Consensus 59 D~-~T~GNHefD~~~-----l~~~l~~~~~vrpaN~~~~~pg~~~~i~~~~G~kIgVi~l 112 (252)
T 2z06_A 59 DL-VSLGNHAWDHKE-----VYALLESEPVVRPLNYPPGTPGKGFWRLEVGGESLLFVQV 112 (252)
T ss_dssp CE-EECCTTTTSCTT-----HHHHHHHSSEECCTTSCSSCSSCSEEEEEETTEEEEEEEE
T ss_pred CE-EEeccEeeECch-----HHHHhccCCceEeecCCCCCCCCCeEEEEECCEEEEEEEc
Confidence 44 578999987531 11111111 111 124678888888777643
No 55
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Probab=97.48 E-value=0.00021 Score=65.20 Aligned_cols=72 Identities=21% Similarity=0.327 Sum_probs=42.9
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
+++++++|+|. .+. . +.+ +.+.......+.+|++||+++.|.. ..+.......+... .+-
T Consensus 83 ~pI~VIGDIHG------q~~-d------L~~-LL~~~g~p~~d~yVFLGDyVDRGp~--S~Evl~lL~aLk~~----~P~ 142 (521)
T 1aui_A 83 APVTVCGDIHG------QFF-D------LMK-LFEVGGSPANTRYLFLGDYVDRGYF--SIECVLYLWALKIL----YPK 142 (521)
T ss_dssp SSEEEECCCTT------CHH-H------HHH-HHHHHCCTTTCCEEECSCCSSSSSC--HHHHHHHHHHHHHH----STT
T ss_pred cceeeccCCCC------CHH-H------HHH-HHHhcCCCCcceEEEcCCcCCCCCC--HHHHHHHHHHHhhh----CCC
Confidence 57999999997 111 1 111 2222222356889999999998873 22333333333222 123
Q ss_pred eEEEecCCCCCC
Q psy2930 93 ELHVVPGNHDMG 104 (293)
Q Consensus 93 ~~~~v~GNHD~~ 104 (293)
.++++.||||..
T Consensus 143 ~v~lLRGNHE~~ 154 (521)
T 1aui_A 143 TLFLLRGNHECR 154 (521)
T ss_dssp TEEECCCTTSSH
T ss_pred eEEEecCCccHH
Confidence 589999999963
No 56
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI, protein STR initiative; 2.30A {Deinococcus radiodurans} SCOP: d.159.1.9
Probab=97.40 E-value=0.001 Score=55.55 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=41.1
Q ss_pred eEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCc
Q psy2930 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT 92 (293)
Q Consensus 13 ~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (293)
|||+++.|+ +|.+. ........+.+++.. |++++.|+-...|..... ..++.+..+ +.
T Consensus 1 m~ilf~GDv-~g~~G-----------~~~~~~~l~~lr~~~-d~vi~nge~~~~G~g~~~----~~~~~l~~~-----G~ 58 (255)
T 1t70_A 1 MRVLFIGDV-FGQPG-----------RRVLQNHLPTIRPQF-DFVIVNMENSAGGFGMHR----DAARGALEA-----GA 58 (255)
T ss_dssp CEEEEECCB-BHHHH-----------HHHHHHHHHHHGGGC-SEEEEECTBTTTTSSCCH----HHHHHHHHH-----TC
T ss_pred CEEEEEecc-CChHH-----------HHHHHHHHHHHHhhC-CEEEECCCCccCCcCCCH----HHHHHHHhC-----CC
Confidence 789999999 33221 112233344444445 999998887776653332 223334332 33
Q ss_pred eEEEecCCCCCCCC
Q psy2930 93 ELHVVPGNHDMGFH 106 (293)
Q Consensus 93 ~~~~v~GNHD~~~~ 106 (293)
- .++.|||++...
T Consensus 59 D-a~TlGNHefD~~ 71 (255)
T 1t70_A 59 G-CLTLGNHAWHHK 71 (255)
T ss_dssp S-EEECCTTTTSST
T ss_pred C-EEEeccccccCc
Confidence 3 567799998753
No 57
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.012 Score=53.15 Aligned_cols=121 Identities=12% Similarity=0.195 Sum_probs=69.7
Q ss_pred CCceEEEEEecCCcCCCCCCchhHHHHhHHHHHHHHHHHHHh-cCCCEEEEcCccCCCCcc--------------CChhh
Q psy2930 10 INNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL-HQPEHIFVLGDLLDEGQY--------------VGGED 74 (293)
Q Consensus 10 ~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pd~vi~~GDl~~~~~~--------------~~~~~ 74 (293)
.++++|++.|.++....... ++.+ ..+.+.++. .+||++|++|.++|..+. .....
T Consensus 145 ~~~l~ivvAsGPyT~sdnl~--yepL-------~~Ll~~v~~~~kPdvLIL~GPFvD~~hp~i~~G~~p~~~~~~~~~~t 215 (460)
T 3flo_A 145 GSSLKVIVTCGPYFANDNFS--LELL-------QEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKT 215 (460)
T ss_dssp SSCEEEEEEESCCSCSSCCC--CHHH-------HHHHHHCCCCCCCSEEEEESCSSBTTCHHHHHTCCCCCTTCSSCCSS
T ss_pred CCCcEEEEEeCCccCCCccC--hHHH-------HHHHHHHHhccCCCEEEEecCcccccCcccccCcccccccccccccC
Confidence 46799999999987655322 1111 234555555 489999999999985431 01334
Q ss_pred HHHHHHHH-Hhhhc-CCCCceEEEecCCCCCCC-C--CCCCchhHHH--H-H-HHhCCCCcceEEeCCEEEEEE
Q psy2930 75 FDNYVRRF-YSLFS-TPDGTELHVVPGNHDMGF-H--YRLHPYLNDR--F-S-RAFNSSMVKLLSIKGSYFVLI 139 (293)
Q Consensus 75 ~~~~~~~~-~~~~~-~~~~~~~~~v~GNHD~~~-~--~~~~~~~~~~--~-~-~~~~~~~~~~~~~~~~~~i~l 139 (293)
+.+.++.. ..+++ ...++.+++|||+||... . +...+...+. + + +..--+++..+.++++.|.+.
T Consensus 216 ~~~lF~~~i~~il~~l~~~t~VVlVPS~rD~~~~~~v~PQPpf~~k~l~l~k~nv~~~sNPc~~~in~v~igvs 289 (460)
T 3flo_A 216 LDELFLKLFTPILKTISPHIQTVLIPSTKDAISNHAAYPQASLIRKALQLPKRNFKCMANPSSFQINEIYFGCS 289 (460)
T ss_dssp HHHHHHHHTHHHHTTSCTTSEEEEECCTTBTTCSCCSBSBCCCCTTTTTCCTTTEEECCBSEEEEETTEEEEEC
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCCcccccCCCCCcCCCCCChhhhcCCcccEEEeCCCEEEEECCEEEEEE
Confidence 55555544 22232 146788999999999852 1 1111110110 1 0 111112467888899887664
No 58
>2kqs_B Death domain-associated protein 6; SUMO, SIM, DAXX, nucleus, phosphoprotein, UBL conjugation PA apoptosis, transcription, transcription regulation; NMR {Homo sapiens}
Probab=49.92 E-value=7.8 Score=19.43 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=13.5
Q ss_pred CCCCceEEEEEecCCcC
Q psy2930 8 ESINNIKAIFIADTHLL 24 (293)
Q Consensus 8 ~~~~~~ri~~iSD~H~~ 24 (293)
..-++.+++++||+|..
T Consensus 8 tqcdP~evivlsds~~~ 24 (26)
T 2kqs_B 8 TQCDPEEIIVLSDSDXX 24 (26)
T ss_pred ccCCcceEEEccccccc
Confidence 34567899999999973
No 59
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Probab=47.75 E-value=39 Score=28.84 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=22.2
Q ss_pred CHHHHHHHHhhcCccEEEecCCCCCce
Q psy2930 226 SKESTDMLLDYLNPRLVIDGHTHNGCH 252 (293)
Q Consensus 226 ~~~~~~~ll~~~~~~lvl~GH~H~~~~ 252 (293)
..+...+++...+.++++.||+|....
T Consensus 266 g~~~~~~fl~~~~~~~IV~GHt~~~~~ 292 (342)
T 2z72_A 266 TEAELDTILQHFNVNHIVVGHTSQERV 292 (342)
T ss_dssp CHHHHHHHHHHHTCSEEEECSSCCSSC
T ss_pred ChHHHHHHHHHCCCcEEEECCCcccch
Confidence 445667888888999999999998763
No 60
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=47.02 E-value=40 Score=26.03 Aligned_cols=53 Identities=9% Similarity=0.100 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCCEEEEcC---ccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEE
Q psy2930 43 KTFQTAVALHQPEHIFVLG---DLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHV 96 (293)
Q Consensus 43 ~~~~~~~~~~~pd~vi~~G---Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (293)
..+.+.+...+||+|++.. |+.........+.....++.+.+.+. ..++++++
T Consensus 68 ~r~~~~v~~~~Pd~vvi~~G~ND~~~~~~~~~~~~~~~~l~~ii~~~~-~~~~~iil 123 (209)
T 4hf7_A 68 LRFREDVINLSPALVVINAGTNDVAENTGAYNEDYTFGNIASMAELAK-ANKIKVIL 123 (209)
T ss_dssp HHHHHHTGGGCCSEEEECCCHHHHTTSSSSCCHHHHHHHHHHHHHHHH-HTTCEEEE
T ss_pred HHHHHHHHhcCCCEEEEEeCCCcCccccccccHHHHHHHHHHhhHHHh-ccCceEEE
Confidence 3344444456888877754 66543322233333333344433322 24555544
No 61
>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440}
Probab=42.98 E-value=1.1e+02 Score=23.54 Aligned_cols=124 Identities=12% Similarity=0.089 Sum_probs=59.3
Q ss_pred HHHHhCCCCcceEEeCCEEEEEEeceeccCCCCCCCchhHHHHHHHHHHhhhcccCCCCCccccCCCCCCCEEeeccCCC
Q psy2930 117 FSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLY 196 (293)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~Iv~~H~P~~ 196 (293)
+++..|.. .......+..++++|-+.-.-.+.......+..+..+.+.++.+.. .+.|+|...|.+..
T Consensus 8 ~~~~~g~~-~~~~~~~~tALlvID~Q~~f~~g~l~~~~~~~~i~~i~~l~~~ar~-----------~g~pVi~t~~~~~~ 75 (197)
T 4h17_A 8 MFRLTGRD-YPPAKLSHASLIIIDAQKEYLSGPLKLSGMDEAVANIARLLDAARK-----------SGRPIIHVRHLGTV 75 (197)
T ss_dssp HHHHHTCC-CCCCCGGGEEEEEECCBGGGGSSTTCCTTHHHHHHHHHHHHHHHHH-----------TTCCEEEEEECCCT
T ss_pred HHHHhCCC-CCCCCCCCeEEEEEcccchhhCCccCCcCHHHHHHHHHHHHHHHHH-----------CCCeEEEEEEecCC
Confidence 33444544 3334556678888886653322111112334455555555554433 56788888887542
Q ss_pred cCC---CCCCCC-CCCchhhhhcccc-cccccccCHHHHHHHHhhcCcc-EEEecCCCCCce
Q psy2930 197 RES---DEECSG-PDSAPDIEKRKKF-RQRWECISKESTDMLLDYLNPR-LVIDGHTHNGCH 252 (293)
Q Consensus 197 ~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~l~~~~~~~ll~~~~~~-lvl~GH~H~~~~ 252 (293)
... ....+. .+...+.....-+ +..|+......+.++|++.+++ ++++|=.=..+.
T Consensus 76 ~~~~~~~g~~g~~~~~l~~~~~~~vi~K~~~saF~~t~L~~~L~~~gi~~lvi~G~~T~~CV 137 (197)
T 4h17_A 76 GGRFDPQGPAGQFIPGLEPLEGEIVIEKRMPNAFKNTKLHETLQELGHLDLIVCGFMSHSSV 137 (197)
T ss_dssp TSTTCTTSGGGSBCTTCCCCTTCEEEEESSSSTTTTTCHHHHHHHHTCSEEEEEEECTTTHH
T ss_pred CCccccCCCCccCCHhhCCCCCCEEEeCCcCCCcccchHHHHHHhcCCCEEEEEeeCcCHHH
Confidence 100 000000 0111000000001 1123444445678888888876 888886555544
No 62
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=42.05 E-value=36 Score=29.62 Aligned_cols=25 Identities=12% Similarity=0.361 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcCccCC
Q psy2930 41 MYKTFQTAVALHQPEHIFVLGDLLD 65 (293)
Q Consensus 41 ~~~~~~~~~~~~~pd~vi~~GDl~~ 65 (293)
+...+.+.+++.+||+|++.||-..
T Consensus 82 ~~~~l~~~l~~~kPD~Vlv~gd~~~ 106 (385)
T 4hwg_A 82 VIEKVDEVLEKEKPDAVLFYGDTNS 106 (385)
T ss_dssp HHHHHHHHHHHHCCSEEEEESCSGG
T ss_pred HHHHHHHHHHhcCCcEEEEECCchH
Confidence 5566788888899999999999765
No 63
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=42.02 E-value=64 Score=24.93 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCccCC
Q psy2930 40 QMYKTFQTAVALHQPEHIFVLGDLLD 65 (293)
Q Consensus 40 ~~~~~~~~~~~~~~pd~vi~~GDl~~ 65 (293)
.+.+++.++++..+.|+||.+|=+.-
T Consensus 65 ~I~~al~~a~~~~~~DlVIttGGtg~ 90 (189)
T 1jlj_A 65 EIKETLIDWCDEKELNLILTTGGTGF 90 (189)
T ss_dssp HHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred HHHHHHHHHhhcCCCCEEEEcCCCCC
Confidence 35566666655458999999996655
No 64
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=38.31 E-value=82 Score=23.61 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCccCC
Q psy2930 40 QMYKTFQTAVALHQPEHIFVLGDLLD 65 (293)
Q Consensus 40 ~~~~~~~~~~~~~~pd~vi~~GDl~~ 65 (293)
.+.+++.++++..+.|+||.+|=+.-
T Consensus 58 ~i~~~l~~~~~~~~~DlVittGG~g~ 83 (167)
T 1uuy_A 58 RIKDILQKWSDVDEMDLILTLGGTGF 83 (167)
T ss_dssp HHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 35556665554457999999996654
No 65
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=37.14 E-value=1e+02 Score=22.97 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=8.0
Q ss_pred HHHHHHhcCCCEEEEc
Q psy2930 45 FQTAVALHQPEHIFVL 60 (293)
Q Consensus 45 ~~~~~~~~~pd~vi~~ 60 (293)
+.+.+...+||+|++.
T Consensus 54 ~~~~~~~~~pd~Vii~ 69 (190)
T 1ivn_A 54 LPALLKQHQPRWVLVE 69 (190)
T ss_dssp HHHHHHHHCCSEEEEE
T ss_pred HHHHHHhcCCCEEEEE
Confidence 3344444566665543
No 66
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=35.41 E-value=1e+02 Score=23.48 Aligned_cols=26 Identities=15% Similarity=-0.004 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCccCC
Q psy2930 40 QMYKTFQTAVALHQPEHIFVLGDLLD 65 (293)
Q Consensus 40 ~~~~~~~~~~~~~~pd~vi~~GDl~~ 65 (293)
.+.+++.++++..+.|+||.+|=+.-
T Consensus 55 ~I~~~l~~~~~~~~~DlVittGG~g~ 80 (178)
T 2pbq_A 55 LIEKTLIELADEKGCSLILTTGGTGP 80 (178)
T ss_dssp HHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 35556666555447999999996554
No 67
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=34.74 E-value=72 Score=24.36 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCccCC
Q psy2930 40 QMYKTFQTAVALHQPEHIFVLGDLLD 65 (293)
Q Consensus 40 ~~~~~~~~~~~~~~pd~vi~~GDl~~ 65 (293)
.+.+++.+++++...|+||.+|=..-
T Consensus 68 ~I~~al~~a~~~~~~DlVittGG~s~ 93 (178)
T 2pjk_A 68 KILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 35556665554445999999996654
No 68
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=32.41 E-value=68 Score=27.91 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCccCC
Q psy2930 40 QMYKTFQTAVALHQPEHIFVLGDLLD 65 (293)
Q Consensus 40 ~~~~~~~~~~~~~~pd~vi~~GDl~~ 65 (293)
.+...+.+.+++.+||+|++.||-..
T Consensus 101 ~~~~~l~~~l~~~kPD~Vi~~gd~~~ 126 (403)
T 3ot5_A 101 RVMNGINEVIAAENPDIVLVHGDTTT 126 (403)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTCHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchh
Confidence 35566788888899999999998654
No 69
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=32.31 E-value=60 Score=24.44 Aligned_cols=55 Identities=13% Similarity=0.197 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCCEEEEcC---ccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEe
Q psy2930 42 YKTFQTAVALHQPEHIFVLG---DLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVV 97 (293)
Q Consensus 42 ~~~~~~~~~~~~pd~vi~~G---Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 97 (293)
...+.+.+...+||+|++.. |+.........+++...++++.+.+. ..+.+++++
T Consensus 63 ~~~~~~~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~vil~ 120 (204)
T 3p94_A 63 LVRFRQDVINLKPKAVVILAGINDIAHNNGVIALENVFGNLVSMAELAK-ANHIKVIFC 120 (204)
T ss_dssp HHHHHHHTGGGCEEEEEEECCHHHHTTTTSCCCHHHHHHHHHHHHHHHH-HTTCEEEEE
T ss_pred HHHHHHHHHhCCCCEEEEEeecCccccccCCCCHHHHHHHHHHHHHHHH-hCCCeEEEE
Confidence 33444444456788877755 55543222244555555555555443 245555444
No 70
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=31.83 E-value=1.3e+02 Score=22.56 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCccCC
Q psy2930 40 QMYKTFQTAVALHQPEHIFVLGDLLD 65 (293)
Q Consensus 40 ~~~~~~~~~~~~~~pd~vi~~GDl~~ 65 (293)
.+.+++.......+.|+||.+|=+.-
T Consensus 68 ~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 68 KILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred HHHHHHHHHHhcCCCCEEEecCCccc
Confidence 35555665555668999999996554
No 71
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=31.77 E-value=81 Score=23.74 Aligned_cols=26 Identities=4% Similarity=-0.020 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCccCC
Q psy2930 40 QMYKTFQTAVALHQPEHIFVLGDLLD 65 (293)
Q Consensus 40 ~~~~~~~~~~~~~~pd~vi~~GDl~~ 65 (293)
.+.+++.++++..+.|+||.+|=+.-
T Consensus 59 ~i~~~l~~~~~~~~~DlVittGG~g~ 84 (169)
T 1y5e_A 59 SIQQAVLAGYHKEDVDVVLTNGGTGI 84 (169)
T ss_dssp HHHHHHHHHHTCTTCSEEEEECCCSS
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCC
Confidence 35556665554347999999996544
No 72
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum}
Probab=29.66 E-value=70 Score=24.77 Aligned_cols=31 Identities=16% Similarity=0.081 Sum_probs=21.4
Q ss_pred ccccCHHHHHHHHhhcCcc-EEEecCCCCCce
Q psy2930 222 WECISKESTDMLLDYLNPR-LVIDGHTHNGCH 252 (293)
Q Consensus 222 ~~~l~~~~~~~ll~~~~~~-lvl~GH~H~~~~ 252 (293)
|+......+.++|++.+++ ++++|=.=..+.
T Consensus 96 ~saF~~t~L~~~L~~~gi~~lvi~G~~T~~CV 127 (198)
T 3mcw_A 96 NSAFIGTGLEALLRANGWLELVVAGVSTSNSV 127 (198)
T ss_dssp SSTTTTSSHHHHHHHHTCCEEEEEEECTTTHH
T ss_pred cCccccchHHHHHHcCCCCeEEEEEcCcChHH
Confidence 4444445678899888877 888886555554
No 73
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=28.91 E-value=1e+02 Score=22.10 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=33.3
Q ss_pred HHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCC
Q psy2930 45 FQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMG 104 (293)
Q Consensus 45 ~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~ 104 (293)
....+++-+..+||++.|.-.. .....+..+.. ..++|++.++++-+++
T Consensus 32 v~Kai~~gka~LViiA~D~~p~-------~~~~~i~~lc~----~~~Ip~~~v~sk~~LG 80 (126)
T 2xzm_U 32 VLRTIEAKQALFVCVAEDCDQG-------NYVKLVKALCA----KNEIKYVSVPKRASLG 80 (126)
T ss_dssp HHHHHHHTCCSEEEEESSCCST-------THHHHHHHHHH----HTTCCEEEESCSHHHH
T ss_pred HHHHHHcCCceEEEEeCCCChH-------HHHHHHHHHHH----HhCCCEEEECCHHHHH
Confidence 3455667899999999998642 12333444444 3589999999887764
No 74
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=28.71 E-value=1.6e+02 Score=21.95 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCccCCC
Q psy2930 40 QMYKTFQTAVALHQPEHIFVLGDLLDE 66 (293)
Q Consensus 40 ~~~~~~~~~~~~~~pd~vi~~GDl~~~ 66 (293)
.+.+++.++++ .+.|+||.+|=..-.
T Consensus 54 ~i~~al~~a~~-~~~DlVittGG~s~g 79 (164)
T 3pzy_A 54 PVGEALRKAID-DDVDVILTSGGTGIA 79 (164)
T ss_dssp HHHHHHHHHHH-TTCSEEEEESCCSSS
T ss_pred HHHHHHHHHHh-CCCCEEEECCCCCCC
Confidence 35555555543 479999999976654
No 75
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=28.20 E-value=39 Score=24.09 Aligned_cols=49 Identities=14% Similarity=0.283 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCC
Q psy2930 45 FQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMG 104 (293)
Q Consensus 45 ~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~ 104 (293)
....+++-+..+||+++|.-.. .+...+..+.+ ..++|++.++++-+++
T Consensus 28 v~kai~~gkakLViiA~D~~~~-------~~~~~l~~lc~----~~~VP~~~v~sk~eLG 76 (121)
T 2lbw_A 28 VVKALRKGEKGLVVIAGDIWPA-------DVISHIPVLCE----DHSVPYIFIPSKQDLG 76 (121)
T ss_dssp HHHHHHHSCCCEEEECTTCSCT-------THHHHHHHHHH----HTCCCEEECCCHHHHH
T ss_pred HHHHHHcCCceEEEEeCCCCHH-------HHHHHHHHHHH----hcCCcEEEECCHHHHH
Confidence 4555677899999999998762 12232333433 3589999988776653
No 76
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=28.06 E-value=1.3e+02 Score=20.83 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecC
Q psy2930 45 FQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPG 99 (293)
Q Consensus 45 ~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G 99 (293)
....+++-+..+||++.|. .. .....+..+.. ..++|++.+++
T Consensus 29 v~kai~~gka~lViiA~D~-~~-------~~~~~l~~~c~----~~~Vp~~~~~~ 71 (110)
T 3cpq_A 29 TIKFVKHGEGKLVVLAGNI-PK-------DLEEDVKYYAK----LSNIPVYQHKI 71 (110)
T ss_dssp HHHHHHTTCCSEEEECTTC-BH-------HHHHHHHHHHH----HTTCCEEECCS
T ss_pred HHHHHHcCCceEEEEeCCC-CH-------HHHHHHHHHHH----HcCCCEEEEcC
Confidence 4555667799999999999 31 11222333333 35789888744
No 77
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=26.73 E-value=1.9e+02 Score=22.42 Aligned_cols=27 Identities=11% Similarity=-0.011 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCccCCC
Q psy2930 40 QMYKTFQTAVALHQPEHIFVLGDLLDE 66 (293)
Q Consensus 40 ~~~~~~~~~~~~~~pd~vi~~GDl~~~ 66 (293)
.+.+++.++++..+.|+||.+|=+.-.
T Consensus 53 ~I~~al~~a~~~~~~DlVitTGGtg~g 79 (195)
T 1di6_A 53 IIEQTLCELVDEMSCHLVLTTGGTGPA 79 (195)
T ss_dssp HHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCC
Confidence 455666666655579999999966553
No 78
>2ll1_A U1-TRTX-SP1A; toxin; NMR {Theraphosidae}
Probab=26.33 E-value=22 Score=18.14 Aligned_cols=10 Identities=40% Similarity=0.863 Sum_probs=8.4
Q ss_pred ecCCCCCcee
Q psy2930 244 DGHTHNGCHK 253 (293)
Q Consensus 244 ~GH~H~~~~~ 253 (293)
+||.|.++..
T Consensus 2 cghlhdpcpn 11 (33)
T 2ll1_A 2 CGHLHDPCPN 11 (33)
T ss_dssp CBCSSCBCTT
T ss_pred CcccCCCCCC
Confidence 7999999864
No 79
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=24.38 E-value=1.5e+02 Score=23.73 Aligned_cols=44 Identities=7% Similarity=0.009 Sum_probs=29.7
Q ss_pred HhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 50 ALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 50 ~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
.....|+|++.|-. + .+.+...+..+++++ .++|++.-|||++.
T Consensus 28 ~~~GtD~i~vGGs~---g--vt~~~~~~~v~~ik~-----~~~Pvvlfp~~~~~ 71 (228)
T 3vzx_A 28 CESGTDAVIIGGSD---G--VTEDNVLRMMSKVRR-----FLVPCVLEVSAIEA 71 (228)
T ss_dssp HTSSCSEEEECCCS---C--CCHHHHHHHHHHHTT-----SSSCEEEECSCGGG
T ss_pred HHcCCCEEEECCcC---C--CCHHHHHHHHHHhhc-----cCCCEEEeCCCHHH
Confidence 45789999999921 1 133444454555544 47899999999875
No 80
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.02 E-value=1.7e+02 Score=19.67 Aligned_cols=48 Identities=6% Similarity=0.036 Sum_probs=29.4
Q ss_pred HHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEe-cCCCCCC
Q psy2930 45 FQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVV-PGNHDMG 104 (293)
Q Consensus 45 ~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~GNHD~~ 104 (293)
..+.+++-+..+||++.|. . + ....-+..+.+ ..++|++.. ..+-+++
T Consensus 23 v~kai~~gka~lViiA~D~-~------~-~~~~~i~~~c~----~~~ip~~~~~~s~~eLG 71 (99)
T 3j21_Z 23 TIRLAKTGGAKLIIVAKNA-P------K-EIKDDIYYYAK----LSDIPVYEFEGTSVELG 71 (99)
T ss_dssp HHHHHHHTCCSEEEEECCC-C------H-HHHHHHHHHHH----HTTCCEEEECCCSCGGG
T ss_pred HHHHHHcCCccEEEEeCCC-C------H-HHHHHHHHHHH----HcCCCEEEeCCCHHHHH
Confidence 4556677899999999993 2 1 12222333333 357998777 5555554
No 81
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=23.43 E-value=2.2e+02 Score=22.91 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=30.4
Q ss_pred HHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 49 VALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 49 ~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
+.....|+|++.|.. |. +.+...+..+++++ ..+|++..|||.+.
T Consensus 32 ~~~~GtDaI~vGgs~---gv--t~~~~~~~v~~ik~-----~~~Piil~p~~~~~ 76 (235)
T 3w01_A 32 ICMSQTDAIMIGGTD---DV--TEDNVIHLMSKIRR-----YPLPLVLEISNIES 76 (235)
T ss_dssp HHTSSCSEEEECCSS---CC--CHHHHHHHHHHHTT-----SCSCEEEECCCSTT
T ss_pred HHHcCCCEEEECCcC---Cc--CHHHHHHHHHHhcC-----cCCCEEEecCCHHH
Confidence 345789999999932 11 33444455555554 46899999999875
No 82
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=23.40 E-value=96 Score=22.86 Aligned_cols=12 Identities=8% Similarity=-0.011 Sum_probs=9.3
Q ss_pred eEEEEEecCCcC
Q psy2930 13 IKAIFIADTHLL 24 (293)
Q Consensus 13 ~ri~~iSD~H~~ 24 (293)
-||+++.|.-..
T Consensus 3 ~~i~~~GDSit~ 14 (185)
T 3hp4_A 3 NTILILGDXLSA 14 (185)
T ss_dssp EEEEEEECTTTT
T ss_pred CeEEEECCcccc
Confidence 589999998653
No 83
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=23.00 E-value=2.2e+02 Score=20.71 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=8.6
Q ss_pred eEEEEEecCCcCC
Q psy2930 13 IKAIFIADTHLLG 25 (293)
Q Consensus 13 ~ri~~iSD~H~~~ 25 (293)
.+|+++.|.....
T Consensus 2 ~~i~~~GDS~t~g 14 (195)
T 1yzf_A 2 RKIVLFGDSITAG 14 (195)
T ss_dssp EEEEEEESHHHHC
T ss_pred CeEEEEccccccC
Confidence 3677888876543
No 84
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=22.92 E-value=93 Score=25.17 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=25.9
Q ss_pred CEEEEcCccCCCCc--------cCChhhHHHHHHHHHhhhcCCCCceEEEecCCCC
Q psy2930 55 EHIFVLGDLLDEGQ--------YVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHD 102 (293)
Q Consensus 55 d~vi~~GDl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD 102 (293)
+-++++||++..+. ..+.++|.+.++++.+.+ .. ..+++||--.
T Consensus 201 ~~vLfsGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~l~~~~---~d-~~~v~PGHG~ 252 (270)
T 4eyb_A 201 TDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAF---PK-ASMIVMSHSA 252 (270)
T ss_dssp SSEEECTTTCCCTTCSCCCCCTTCCTTTHHHHHHHHHHHS---TT-CCEEECSSSC
T ss_pred CcEEEEeCeecCCCCCCcCCCCCCCHHHHHHHHHHHHhhC---CC-CcEEEcCCCC
Confidence 34789999875432 112355767677776654 12 2367898443
No 85
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=22.12 E-value=56 Score=23.06 Aligned_cols=49 Identities=10% Similarity=0.248 Sum_probs=32.9
Q ss_pred HHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCC
Q psy2930 45 FQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMG 104 (293)
Q Consensus 45 ~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~ 104 (293)
....+++-+..+||+++|.-.. .+...+..+.+ ..++|++.+++.-+++
T Consensus 33 v~kaI~~gka~LVvIA~D~~p~-------~i~~~l~~lC~----~~~VP~~~v~sk~~LG 81 (113)
T 3jyw_G 33 VVALIENKKAKLVLIANDVDPI-------ELVVFLPALCK----KMGVPYAIVKGKARLG 81 (113)
T ss_dssp HHHTTTTTCCSEEEECSCCSSH-------HHHTTHHHHHH----HTTCCCEECSCSTTTH
T ss_pred HHHHHHcCCceEEEEeCCCCHH-------HHHHHHHHHHH----HcCCCEEEECCHHHHH
Confidence 3455666799999999998651 12222333333 3589999999988875
No 86
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=22.03 E-value=68 Score=26.28 Aligned_cols=10 Identities=40% Similarity=0.783 Sum_probs=8.1
Q ss_pred CCCEEEEcCc
Q psy2930 53 QPEHIFVLGD 62 (293)
Q Consensus 53 ~pd~vi~~GD 62 (293)
.||+|+++.=
T Consensus 158 ~Pdll~V~Dp 167 (256)
T 2vqe_B 158 LPDAIFVVDP 167 (256)
T ss_dssp CCSEEEESCT
T ss_pred CCCEEEEeCC
Confidence 8999998853
No 87
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=21.48 E-value=1.8e+02 Score=19.61 Aligned_cols=46 Identities=11% Similarity=0.100 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEe-cCCCC
Q psy2930 45 FQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVV-PGNHD 102 (293)
Q Consensus 45 ~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~GNHD 102 (293)
....+++-+..+||++.| .. + .....+..+.+. .++|++.+ +.+-+
T Consensus 24 v~kai~~gka~lViiA~D-~~------~-~~~~~l~~~c~~----~~vp~~~~~~s~~e 70 (101)
T 1w41_A 24 SIQYAKMGGAKLIIVARN-AR------P-DIKEDIEYYARL----SGIPVYEFEGTSVE 70 (101)
T ss_dssp HHHHHHHTCCSEEEEETT-SC------H-HHHHHHHHHHHH----HTCCEEEESSCHHH
T ss_pred HHHHHHcCCCcEEEEeCC-CC------H-HHHHHHHHHHHh----cCCCEEEecCCHHH
Confidence 455667789999999999 32 1 122223333332 47898876 44443
No 88
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=21.26 E-value=74 Score=25.25 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcCccC
Q psy2930 41 MYKTFQTAVALHQPEHIFVLGDLL 64 (293)
Q Consensus 41 ~~~~~~~~~~~~~pd~vi~~GDl~ 64 (293)
..+.+.+.+++.+||+||++|=-.
T Consensus 50 ~~~~l~~~i~~~~Pd~Vi~vG~a~ 73 (215)
T 3giu_A 50 VDNIINKTLASNHYDVVLAIGQAG 73 (215)
T ss_dssp HHHHHHHHHHHSCCSEEEEEEECT
T ss_pred HHHHHHHHHHHhCCCEEEEeccCC
Confidence 345566677788999999999643
No 89
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=21.16 E-value=1.6e+02 Score=22.06 Aligned_cols=51 Identities=8% Similarity=0.031 Sum_probs=34.6
Q ss_pred HHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEe
Q psy2930 46 QTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVV 97 (293)
Q Consensus 46 ~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 97 (293)
.+.++..+.|.||.+|=++.++....+.-..+..+.+.++- .+.++||...
T Consensus 63 ~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~vs~Gl~~v~-L~~~vPV~~G 113 (157)
T 2obx_A 63 RTLAETGRYGAVLGTAFVVNGGIYRHEFVASAVIDGMMNVQ-LSTGVPVLSA 113 (157)
T ss_dssp HHHHHHTCCSEEEEEEECCCCSSBCCHHHHHHHHHHHHHHH-HHHCCCEEEE
T ss_pred HHHHhcCCCCEEEEeeccccCCCcHHHHHHHHHHHHHHHHH-hhcCCCEEEE
Confidence 34445578999999999999777666555666666666643 1457887443
No 90
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=21.02 E-value=2e+02 Score=19.51 Aligned_cols=48 Identities=17% Similarity=0.130 Sum_probs=29.6
Q ss_pred HHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 46 QTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 46 ~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
.+.+...+||+||+--++-+.. -.+..+.+++. ...+|++++.+..+.
T Consensus 44 ~~~l~~~~~dlvi~d~~l~~~~-------g~~~~~~l~~~---~~~~~ii~~s~~~~~ 91 (137)
T 3hdg_A 44 ERLFGLHAPDVIITDIRMPKLG-------GLEMLDRIKAG---GAKPYVIVISAFSEM 91 (137)
T ss_dssp HHHHHHHCCSEEEECSSCSSSC-------HHHHHHHHHHT---TCCCEEEECCCCCCH
T ss_pred HHHHhccCCCEEEEeCCCCCCC-------HHHHHHHHHhc---CCCCcEEEEecCcCh
Confidence 3445567899999866554421 12334555554 357888888887653
No 91
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=20.94 E-value=1.3e+02 Score=19.48 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=32.6
Q ss_pred HHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCCC
Q psy2930 45 FQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMG 104 (293)
Q Consensus 45 ~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~ 104 (293)
....+++-+..+||++.|.-. .....+..+.+. .++|++.++++-+++
T Consensus 19 v~kai~~gkaklViiA~D~~~--------~~~~~i~~lc~~----~~Ip~~~v~sk~eLG 66 (82)
T 3v7e_A 19 TVKALKRGSVKEVVVAKDADP--------ILTSSVVSLAED----QGISVSMVESMKKLG 66 (82)
T ss_dssp HHHHHTTTCEEEEEEETTSCH--------HHHHHHHHHHHH----HTCCEEEESCHHHHH
T ss_pred HHHHHHcCCeeEEEEeCCCCH--------HHHHHHHHHHHH----cCCCEEEECCHHHHH
Confidence 455566779999999999875 123334444443 479999999776653
No 92
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=20.74 E-value=1.4e+02 Score=22.32 Aligned_cols=51 Identities=12% Similarity=0.012 Sum_probs=34.5
Q ss_pred HHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEe
Q psy2930 46 QTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVV 97 (293)
Q Consensus 46 ~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 97 (293)
.+.++..+.|.||.+|=++.++....+.-.....+.+.++- .+.++|+...
T Consensus 62 ~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~vs~Gl~~v~-L~~~vPV~~G 112 (158)
T 1di0_A 62 KTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQ-LETEVPVLSV 112 (158)
T ss_dssp HHHHHTSCCSEEEEEEECCCCSSBCCHHHHHHHHHHHHHHH-HHHCCCEEEE
T ss_pred HHHHhcCCCCEEEEeeccccCCCcHHHHHHHHHHHHHHHHH-hhcCCCEEEE
Confidence 34445568999999999998777666555666666666643 1457887443
No 93
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}
Probab=20.68 E-value=68 Score=25.45 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCCCEEEEcCccC
Q psy2930 43 KTFQTAVALHQPEHIFVLGDLL 64 (293)
Q Consensus 43 ~~~~~~~~~~~pd~vi~~GDl~ 64 (293)
+.+.+.+++.+||+||+.|=-.
T Consensus 51 ~~l~~~~~~~~Pd~VihvG~ag 72 (215)
T 3lac_A 51 SVLKEYIEELAPEFIICIGQAG 72 (215)
T ss_dssp HHHHHHHHHHCCSEEEEEEECT
T ss_pred HHHHHHHHhhCCCeEEEeccCC
Confidence 4456667778999999999644
No 94
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum}
Probab=20.65 E-value=2.3e+02 Score=21.25 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=21.1
Q ss_pred ccccCHHHHHHHHhhcCcc-EEEecCCCCCce
Q psy2930 222 WECISKESTDMLLDYLNPR-LVIDGHTHNGCH 252 (293)
Q Consensus 222 ~~~l~~~~~~~ll~~~~~~-lvl~GH~H~~~~ 252 (293)
|+......+.++|++.+++ ++++|=.=..+.
T Consensus 93 ~saF~~t~L~~~L~~~gi~~lii~G~~T~~CV 124 (182)
T 3eef_A 93 YSGFYGTNLDMILRANGIDTVVLIGLDADICV 124 (182)
T ss_dssp SSTTTTSSHHHHHHHTTCCEEEEEEECTTTHH
T ss_pred cCCCCCCCHHHHHHhcCCCeEEEEEeccCHHH
Confidence 4444445678889888876 788886555444
No 95
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=20.30 E-value=1.2e+02 Score=21.32 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=30.0
Q ss_pred HHHHHHhcCCCEEEEcCccCCCCccCChhhHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q psy2930 45 FQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM 103 (293)
Q Consensus 45 ~~~~~~~~~pd~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 103 (293)
....+++-+..+||++.|......... +..+.+ ..++|++.++.+-++
T Consensus 37 v~kal~~gka~lViiA~D~~~~~~~~~-------l~~lc~----~~~Vp~~~~~sk~eL 84 (120)
T 1vq8_F 37 TTKSIERGSAELVFVAEDVQPEEIVMH-------IPELAD----EKGVPFIFVEQQDDL 84 (120)
T ss_dssp HHHHHHHTCCSEEEEESCCSSGGGTTT-------HHHHHH----TTCCCEEEESCHHHH
T ss_pred HHHHHHcCCceEEEEeCCCChHHHHHH-------HHHHHH----hcCCCEEEECCHHHH
Confidence 455566779999999999976321111 222333 357898777665544
Done!