RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2930
(293 letters)
>gnl|CDD|163672 cd08165, MPP_MPPE1, human MPPE1 and related proteins,
metallophosphatase domain. MPPE1 is a functionally
uncharacterized metallophosphatase domain-containing
protein. The MPPE1 gene is located on chromosome 18 and
is a candidate susceptibility gene for Bipolar disorder.
MPPE1 belongs to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 156
Score = 162 bits (413), Expect = 3e-50
Identities = 58/106 (54%), Positives = 77/106 (72%)
Query: 16 IFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDF 75
+F+ADTHLLG GHW DKLRREWQM ++FQT++ L QP+ +FVLGDL DEG++ E++
Sbjct: 1 MFLADTHLLGSILGHWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEW 60
Query: 76 DNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAF 121
++YV RF +F P LHVV GNHD+GFHY + Y +RF + F
Sbjct: 61 EDYVERFKKMFGHPPDLPLHVVVGNHDIGFHYEMTTYKLERFEKVF 106
Score = 69.7 bits (171), Expect = 1e-14
Identities = 32/86 (37%), Positives = 37/86 (43%), Gaps = 36/86 (41%)
Query: 188 IILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHT 247
I+LQHFPLYR LL +L PRLV+ GHT
Sbjct: 107 ILLQHFPLYR-----------------------------------LLQWLKPRLVLSGHT 131
Query: 248 HNGCHKYHAYGKVHEYTVPSFSWRNK 273
H+ C H E TVPSFSWRN+
Sbjct: 132 HSFCEVTH-PDGTPEVTVPSFSWRNR 156
>gnl|CDD|163627 cd07384, MPP_Cdc1_like, Saccharomyces cerevisiae CDC1 and related
proteins, metallophosphatase domain. Cdc1 (also known
as XlCdc1 in Xenopus laevis) is an endoplasmic
reticulum-localized transmembrane lipid phosphatase with
a metallophosphatase domain facing the ER lumen. In
budding yeast, the gene encoding CDC1 is essential while
nonlethal mutations cause defects in Golgi inheritance
and actin polarization. Cdc1 mutant cells accumulate an
unidentified phospholipid, suggesting that Cdc1 is a
lipid phosphatase. Cdc1 mutant cells also have highly
elevated intracellular calcium levels suggesting a
possible role for Cdc1 in calcium regulation. The 5'
flanking region of Cdc1 is a regulatory region with
conserved binding site motifs for AP1, AP2, Sp1, NF-1
and CREB. DNA polymerase delta consists of at least
four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group
also contains Saccharomyces cerevisiae TED1 (Trafficking
of Emp24p/Erv25p-dependent cargo disrupted 1), which
acts together with Emp24p and Erv25p in cargo exit from
the ER, and human MPPE1. The human MPPE1 gene is a
candidate susceptibility gene for bipolar disorder.
These proteins belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 171
Score = 93.9 bits (234), Expect = 2e-23
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 17 FIADTHLLGPFRGHW-------FDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQY 69
+AD +L + + M + F+TA+ +P+ + LGDL D G+
Sbjct: 2 LVADPQILDETSYPPRPKIALRLTRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRI 61
Query: 70 VGGEDFDNYVRRFYSLFSTPDGTE----LHVVPGNHDMGFHYRL-HPYLNDRFSRAF 121
E+++ YV+RF +F P ++ VPGNHD+G+ + P + DRF R F
Sbjct: 62 ADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGYGEVISFPEVVDRFERYF 118
Score = 46.9 bits (112), Expect = 2e-06
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 37/87 (42%)
Query: 188 IILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHT 247
I+L H PLYR LLD + P L++ GH
Sbjct: 119 ILLTHIPLYR-----------------------------------LLDTIKPVLILSGHD 143
Query: 248 HNGCHKYHAY--GKVHEYTVPSFSWRN 272
H+ C H+ G V E TV SFSWR
Sbjct: 144 HDQCEVVHSSKAGSVREITVKSFSWRM 170
>gnl|CDD|163670 cd08163, MPP_Cdc1, Saccharomyces cerevisiae CDC1 and related
proteins, metallophosphatase domain. Cdc1 (also known
as XlCdc1 in Xenopus laevis) is an endoplasmic
reticulum-localized transmembrane lipid phosphatase with
a metallophosphatase domain facing the ER lumen. In
budding yeast, the gene encoding CDC1 is essential while
nonlethal mutations cause defects in Golgi inheritance
and actin polarization. Cdc1 mutant cells accumulate an
unidentified phospholipid, suggesting that Cdc1 is a
lipid phosphatase. Cdc1 mutant cells also have highly
elevated intracellular calcium levels suggesting a
possible role for Cdc1 in calcium regulation. The 5'
flanking region of Cdc1 is a regulatory region with
conserved binding site motifs for AP1, AP2, Sp1, NF-1
and CREB. DNA polymerase delta consists of at least
four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1
belongs to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 257
Score = 87.8 bits (218), Expect = 2e-20
Identities = 60/276 (21%), Positives = 102/276 (36%), Gaps = 43/276 (15%)
Query: 3 WPASPESINNIKAIFIADTHLLGPFRGHWFDKLRREW-QMYKTFQTAVALHQPEHIFVLG 61
+P P +N D +L RR W M K + P+ LG
Sbjct: 14 YPGRPWILN-TLTEHFVDNYL------------RRNWRYMQKQLK-------PDSTIFLG 53
Query: 62 DLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTE-LHVVPGNHDMGFHYRLHPYLNDRFSRA 120
DL D G+ E + RF +F G + + +PGNHD+GF + + RF +
Sbjct: 54 DLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVVLPVRQRFEKY 113
Query: 121 FNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDRECPKSMK 180
F + +++ + FV++++++L + + +MK
Sbjct: 114 FGPTS-RVIDVGNHTFVILDTISLS----------NKDDPDVYQPPREFLHSFS---AMK 159
Query: 181 LGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPR 240
+ S + I+L H PLYR + C + Q + ++++L + P
Sbjct: 160 VKSKPR-ILLTHVPLYRPPNTSCGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPV 218
Query: 241 LVIDGHTHNGCHKYHAY------GKVHEYTVPSFSW 270
+ G H+ C H Y G E TV S S
Sbjct: 219 IAFSGDDHDYCEVVHEYQFNGKSGSTREITVKSISM 254
>gnl|CDD|163673 cd08166, MPP_Cdc1_like_1, uncharacterized subgroup related to
Saccharomyces cerevisiae CDC1, metallophosphatase
domain. A functionally uncharacterized subgroup related
to the metallophosphatase domain of Saccharomyces
cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1.
Cdc1 is an endoplasmic reticulum-localized transmembrane
lipid phosphatase and is a subunit of DNA polymerase
delta. TED1 (trafficking of Emp24p/Erv25p-dependent
cargo disrupted 1), acts together with Emp24p and Erv25p
in cargo exit from the ER. The MPPE1 gene is a
candidate susceptibility gene for Bipolar disorder.
Proteins in this uncharacterized subgroup belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 195
Score = 61.2 bits (149), Expect = 3e-11
Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 18/133 (13%)
Query: 16 IFIADTHLLG----PFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVG 71
+ +AD +LG F W + + + KT+ A+ QP+ + LGDL+DEG
Sbjct: 1 LLVADPQILGYQNENFGLGWIARWDSDRYLKKTYHLALNFVQPDIVIFLGDLMDEGSIAN 60
Query: 72 GEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSI 131
+++ +YV+RF ++F P+GT++ +PG++D+G + + R F
Sbjct: 61 DDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEED--PIESKIRR-FE--------- 108
Query: 132 KGSYFVLINSMAL 144
YF++++ + L
Sbjct: 109 --KYFIMLSHVPL 119
>gnl|CDD|163641 cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related
proteins, metallophosphatase domain. YbbF/LpxH is an
Escherichia coli UDP-2,3-diacylglucosamine hydrolase
thought to catalyze the fourth step of lipid A
biosynthesis, in which a precursor
UDP-2,3-diacylglucosamine is hydrolyzed to yield
2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs
to the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 217
Score = 46.3 bits (110), Expect = 4e-06
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 13/97 (13%)
Query: 16 IFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLD---EGQYVGG 72
+FI+D HL F L A+AL + + +++LGD+ D V
Sbjct: 1 LFISDLHLGDGGPAADFLLLF--------LLAALALGEADALYLLGDIFDLWFGDDEVVP 52
Query: 73 EDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRL 109
+ L GT ++ VPGNHD
Sbjct: 53 PAAHEVLAALLRLAD--RGTRVYYVPGNHDFLLGDFF 87
>gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase. This
family includes a diverse range of phosphoesterases,
including protein phosphoserine phosphatases,
nucleotidases, sphingomyelin phosphodiesterases and
2'-3' cAMP phosphodiesterases as well as nucleases such
as bacterial SbcD or yeast MRE11. The most conserved
regions in this superfamily centre around the metal
chelating residues.
Length = 185
Score = 40.9 bits (95), Expect = 2e-04
Identities = 37/235 (15%), Positives = 62/235 (26%), Gaps = 52/235 (22%)
Query: 14 KAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGE 73
+ + I D H G L + +P+ + LGDL+D G
Sbjct: 1 RILVIGDLHG-----GLDDLDLLLLLLE------LLGEPKPDLVLFLGDLVDRGPP---- 45
Query: 74 DFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKG 133
V +++V GNHD + + + + +
Sbjct: 46 --SLEVLALLFALKLKAPGPVYLVRGNHDFDSGNSELGFYLECAGLPYVLGNGDVSNGTV 103
Query: 134 SYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHF 193
L + G ++ + L+ L D + I+L H
Sbjct: 104 EIIGLSSLYGKGGG-----LVWEEFLELLDLLLLAALVDGK-------------ILLVHG 145
Query: 194 PLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTH 248
PL D + + LL LV+ GHTH
Sbjct: 146 PLSPSLDSGDDIYLFGEEA-----------------LEDLLKDNGVDLVLRGHTH 183
>gnl|CDD|163614 cd00838, MPP_superfamily, metallophosphatase superfamily,
metallophosphatase domain. Metallophosphatases (MPPs),
also known as metallophosphoesterases,
phosphodiesterases (PDEs), binuclear
metallophosphoesterases, and dimetal-containing
phosphoesterases (DMPs), represent a diverse superfamily
of enzymes with a conserved domain containing an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
This superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 131
Score = 39.6 bits (92), Expect = 3e-04
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 19/103 (18%)
Query: 16 IFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDF 75
I+D H + L + A +P+ + VLGDL+ +G
Sbjct: 1 AVISDIHG-------NLEALEAVLEAA-----LAAAEKPDFVLVLGDLVGDGPD------ 42
Query: 76 DNYVRRFYSLFSTPDGTELHVVPGNHDM-GFHYRLHPYLNDRF 117
V G ++VVPGNHD+ H + L++
Sbjct: 43 PEEVLAAALALLLLLGIPVYVVPGNHDILLTHGPPYDPLDELS 85
Score = 30.7 bits (69), Expect = 0.35
Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 17/78 (21%)
Query: 188 IILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHT 247
I+L H P Y DE S + + + LL+ LV+ GHT
Sbjct: 70 ILLTHGPPYDPLDEL-----SPDEDPGSEALLE------------LLEKYGVDLVLSGHT 112
Query: 248 HNGCHKYHAYGKVHEYTV 265
H + G
Sbjct: 113 HVYERREPDGGGTLYINP 130
>gnl|CDD|163671 cd08164, MPP_Ted1, Saccharomyces cerevisiae Ted1 and related
proteins, metallophosphatase domain. Saccharomyces
cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent
cargo disrupted 1) is a metallophosphatase
domain-containing protein which acts together with
Emp24p and Erv25p in cargo exit from the ER. Ted1
belongs to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 193
Score = 40.5 bits (95), Expect = 3e-04
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 18/86 (20%)
Query: 53 QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFS----------------TPDG-TELH 95
+P+ + VLGDL Q++ E+F R+ F DG T L
Sbjct: 44 KPDAVVVLGDLFSS-QWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLI 102
Query: 96 VVPGNHDMGFHYRLHPYLNDRFSRAF 121
+ GNHD+G+ + +RF F
Sbjct: 103 NIAGNHDVGYGGEVTEARIERFESLF 128
>gnl|CDD|163634 cd07391, MPP_PF1019, Pyrococcus furiosus PF1019 and related
proteins, metallophosphatase domain. This family
includes bacterial and archeal proteins homologous to
PF1019, an uncharacterized Pyrococcus furiosus protein.
The domain present in members of this family belongs to
the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 172
Score = 38.4 bits (90), Expect = 0.001
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 13/96 (13%)
Query: 18 IADTHLLGPFRGHWFDK---LRREWQMYKTFQTAVAL---HQPEHIFVLGDLLDEGQYVG 71
+AD HL G + + L Q T + L + PE + +LGDL G
Sbjct: 3 VADLHL-G--KEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHS---FG 56
Query: 72 GEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHY 107
G + L ++ ++ GNHD G
Sbjct: 57 GLSRQEF-EEVAFLRLLAKDVDVILIRGNHDGGLPE 91
>gnl|CDD|163645 cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related
proteins, metallophosphatase domain. GpdQ
(glycerophosphodiesterase Q, also known as Rv0805 in
Mycobacterium tuberculosis) is a binuclear
metallophosphoesterase from Enterobacter aerogenes that
catalyzes the hydrolysis of mono-, di-, and triester
substrates, including some organophosphate pesticides
and products of the degradation of nerve agents. The
GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide
phosphodiesterase activity. GpdQ and Rv0805 belong to
the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 240
Score = 38.7 bits (91), Expect = 0.002
Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 28/95 (29%)
Query: 18 IADTHLLGPFRGHWF--DKLRREWQMYKTFQTAVAL-----HQPEHIFVLGDLLDEGQ-- 68
I+D HL G D + +A +P+ + V GDL D+G
Sbjct: 5 ISDLHLRADGEGALLGVDTAAS-------LEAVLAHINALHPRPDLVLVTGDLTDDGSPE 57
Query: 69 -YVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHD 102
Y R L + ++++PGNHD
Sbjct: 58 SY----------ERLRELLA-ALPIPVYLLPGNHD 81
>gnl|CDD|234479 TIGR04123, P_estr_lig_assc, metallophosphoesterase, DNA
ligase-associated. Members of this protein family are
an uncharacterized putative metallophosphoesterase
associated with a DNA ligase, a helicase, and a putative
exonuclease. It may play a role in DNA repair. Its
system is present in about 12 % of prokaryotic reference
genomes.
Length = 208
Score = 38.3 bits (90), Expect = 0.002
Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 26/109 (23%)
Query: 3 WPASPESINNIKAIFIADTHLLGPFRGHWFDKLRREWQM---YKTFQT------AVALHQ 53
WPA + + +AD HL G + F R Y T T + +Q
Sbjct: 18 WPAE-------RLLVVADLHL-G--KAAHF---RARGIPLPPYDTRATLERLAALIQRYQ 64
Query: 54 PEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHD 102
P + VLGDL + + F + G + ++ GNHD
Sbjct: 65 PRRLIVLGDLFHDRYGAERLTLE----DFAAWRRLHAGLDWVLIEGNHD 109
>gnl|CDD|224325 COG1407, COG1407, Predicted ICC-like phosphoesterases [General
function prediction only].
Length = 235
Score = 38.1 bits (89), Expect = 0.003
Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 18/129 (13%)
Query: 13 IKAIFIADTHL-LGPF---RGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQ 68
+ + +AD HL RG + + + ++ K + + P+ + +LGDL E
Sbjct: 20 GRTLVVADLHLGYEESLARRGINLPRYQTD-RILKRLDRIIERYGPKRLIILGDLKHEFG 78
Query: 69 YVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKL 128
++ + VR F D E+ ++ GNHD + + FN +V
Sbjct: 79 KSLRQEKE-EVREF---LELLDEREVIIIRGNHD--------NGIEEILPG-FNVEVVDE 125
Query: 129 LSIKGSYFV 137
L I G F
Sbjct: 126 LEIGGLLFR 134
>gnl|CDD|224326 COG1408, COG1408, Predicted phosphohydrolases [General function
prediction only].
Length = 284
Score = 36.6 bits (85), Expect = 0.010
Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 23/128 (17%)
Query: 4 PASPESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDL 63
P P S+ +K + ++D H F + + + A+A P+ I + GD
Sbjct: 36 PKLPASLQGLKIVQLSDLHS------LPFREEKLALLI------AIANELPDLIVLTGDY 83
Query: 64 LDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNS 123
+D + G + F + P G V GNHD Y + N
Sbjct: 84 VDGDRPPG----VAALALFLAKLKAPLGV--FAVLGNHD----YGVDRS-NVYIGDLLEE 132
Query: 124 SMVKLLSI 131
+L
Sbjct: 133 LGRVVLRN 140
>gnl|CDD|163638 cd07395, MPP_CSTP1, Homo sapiens CSTP1 and related proteins,
metallophosphatase domain. CSTP1 (complete
S-transactivated protein 1) is an uncharacterized Homo
sapiens protein with a metallophosphatase domain, that
is transactivated by the complete S protein of hepatitis
B virus. CSTP1 belongs to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 262
Score = 35.3 bits (82), Expect = 0.022
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 38/162 (23%)
Query: 53 QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGT-ELHVVPGNHDMG------- 104
+P+ + V GDL++ G E + V + S D L V GNHD+G
Sbjct: 49 KPKFVVVCGDLVNA--MPGDELRERQVSDLKDVLSLLDPDIPLVCVCGNHDVGNTPTEES 106
Query: 105 -FHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGD-GCFLCKPAQDRISLI 162
YR + +D FS G +F+++NS AQD +
Sbjct: 107 IKDYR-DVFGDDYFSFWVG----------GVFFIVLNSQLFFDPSEVPELAQAQD--VWL 153
Query: 163 SAKLKCCRKDRECPKSMKLGSYSQPIIL-QHFPLY-RESDEE 202
+L+ K+ +C + +I+ QH P + + DEE
Sbjct: 154 EEQLE-IAKESDC----------KHVIVFQHIPWFLEDPDEE 184
>gnl|CDD|193543 cd05667, M20_Acy1_like2, M20 Peptidase Aminoacylase 1 subfamily.
Peptidase M20 family, Uncharacterized subfamily of
bacterial proteins that have been predicted as
N-acyl-L-amino acid amidohydrolase (amaA), thermostable
carboxypeptidase (cpsA-1, cpsA-2 in Sulfolobus
solfataricus) and abgB (aminobenzoyl-glutamate
utilization protein B), and generally are involved in
the urea cycle and metabolism of amino groups.
Aminoacylases 1 (ACY1s) comprise a class of zinc binding
homodimeric enzymes involved in the hydrolysis of
N-acetylated proteins. N-terminal acetylation of
proteins is a widespread and is a highly conserved
process that is involved in the protection and stability
of proteins. Several types of aminoacylases can be
distinguished on the basis of substrate specificity.
ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino
acids (except L-aspartate), especially
N-acetyl-methionine and acetyl-glutamate into L-amino
acids and an acyl group. However, ACY1 can also catalyze
the reverse reaction, the synthesis of acetylated amino
acids. ACY1 may also play a role in xenobiotic
bioactivation as well as the inter-organ processing of
amino acid-conjugated xenobiotic derivatives
(S-substituted-N-acetyl-L-cysteine).
Length = 402
Score = 35.7 bits (83), Expect = 0.023
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 61 GDLLDEGQYVGGEDFDNYVRR----FYSLFSTPDGTELHVVPGNH 101
DL+ + G EDF Y + F+ L TP G + P NH
Sbjct: 332 NDLVVTPKTTGAEDFSFYAEKVPGLFFFLGGTPPGQDPATAPPNH 376
>gnl|CDD|163643 cd07400, MPP_YydB, Bacillus subtilis YydB and related proteins,
metallophosphatase domain. YydB (BSU40220) is an
uncharacterized Bacillus subtilis protein that belongs
to the following Bacillus subtilis gene cluster
yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 144
Score = 34.3 bits (79), Expect = 0.024
Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 13/115 (11%)
Query: 32 FDKLRREWQMYKTFQTAVALHQ-----PEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLF 86
F R+ + L + P+ + + GDL G E+ ++ +
Sbjct: 9 FGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQRGLPEEFEEAREFLDALPAPL 68
Query: 87 STPDGTELHVVPGNHDM--GFHYRLHPYLNDRFSRAFNS-SMVKLLSIKGSYFVL 138
+ VVPGNHD+ H+ L P R ++ +KLL+ G VL
Sbjct: 69 E-----PVLVVPGNHDVIVVLHHPLVPPPGSGRERLLDAGDALKLLAEAGVDLVL 118
>gnl|CDD|163616 cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase
domain. Mre11 (also known as SbcD in Escherichia coli)
is a subunit of the MRX protein complex. This complex
includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital
role in several nuclear processes including DNA
double-strand break repair, telomere length maintenance,
cell cycle checkpoint control, and meiotic
recombination, in eukaryotes. During double-strand
break repair, the MRX complex is required to hold the
two ends of a broken chromosome together. In vitro
studies show that Mre11 has 3'-5' exonuclease activity
on dsDNA templates and endonuclease activity on dsDNA
and ssDNA templates. In addition to the N-terminal
phosphatase domain, the eukaryotic MRE11 members of this
family have a C-terminal DNA binding domain (not
included in this alignment model). MRE11-like proteins
are found in prokaryotes and archaea was well as in
eukaryotes. Mre11 belongs to the metallophosphatase
(MPP) superfamily. MPPs are functionally diverse, but
all share a conserved domain with an active site
consisting of two metal ions (usually manganese, iron,
or zinc) coordinated with octahedral geometry by a cage
of histidine, aspartate, and asparagine residues. The
MPP superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 223
Score = 34.3 bits (79), Expect = 0.051
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 16 IFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL---HQPEHIFVLGDLLDEGQYVGG 72
+ AD HL P +G + RR ++ F+ V L + + + + GDL D
Sbjct: 3 LHTADWHLGKPLKG--LSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDS------ 54
Query: 73 EDFDNY-VRRFYSLFS--TPDGTELHVVPGNHDM 103
+ + G + ++ GNHD
Sbjct: 55 NNPSPEALELLIEALRRLKEAGIPVFIIAGNHDS 88
>gnl|CDD|163628 cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins,
C-terminal metallophosphatase domain. YkuE is an
uncharacterized Bacillus subtilis protein with a
C-terminal metallophosphatase domain and an N-terminal
twin-arginine (RR) motif. An RR-signal peptide derived
from the Bacillus subtilis YkuE protein can direct
Tat-dependent secretion of agarase in Streptomyces
lividans. This is an indication that YkuE is transported
by the Bacillus subtilis Tat (Twin-arginine
translocation) pathway machinery. YkuE belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 223
Score = 33.8 bits (78), Expect = 0.058
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 27/96 (28%)
Query: 12 NIKAIFIADTHLLGPFRGH-----WFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDE 66
++ ++D HL GPF +K+ +P+ + + GDL+D
Sbjct: 1 GLRIAHLSDLHL-GPFVSRERLERLVEKINAL--------------KPDLVVLTGDLVD- 44
Query: 67 GQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHD 102
G D + P G + V GNHD
Sbjct: 45 ----GSVDVLELLLELLKKLKAPLGV--YAVLGNHD 74
>gnl|CDD|224327 COG1409, Icc, Predicted phosphohydrolases [General function
prediction only].
Length = 301
Score = 33.0 bits (75), Expect = 0.16
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 30 HWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTP 89
H ++ + A+ +P+ + V GDL ++G+ + Y R L
Sbjct: 10 HLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGEP------EEYRRLKELLARLE 63
Query: 90 DGTELHVVPGNHDM 103
+ VVPGNHD
Sbjct: 64 LPAPVIVVPGNHDA 77
>gnl|CDD|223497 COG0420, SbcD, DNA repair exonuclease [DNA replication,
recombination, and repair].
Length = 390
Score = 31.0 bits (70), Expect = 0.67
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 18/97 (18%)
Query: 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL--HQPEHIFVLGDLLDEGQ-- 68
+K + +D HL G + + R E Q + + + + + GDL D
Sbjct: 1 MKILHTSDWHL-GSKQLN--LPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPS 57
Query: 69 -YVGGEDFDNYVRRFYSLFSTPDGTELHVV--PGNHD 102
++ F + VV GNHD
Sbjct: 58 PRA--------LKLFLEALRRLKDAGIPVVVIAGNHD 86
>gnl|CDD|222867 PHA02546, 47, endonuclease subunit; Provisional.
Length = 340
Score = 30.7 bits (70), Expect = 0.74
Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 9/101 (8%)
Query: 14 KAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL---HQPEHIFVLGDLLDEGQYV 70
K + I D HL WF K + A+ H LGD D + +
Sbjct: 2 KILLIGDQHLGVRKDDPWFQNY-----QLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAI 56
Query: 71 GGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHP 111
N+VR G LHV+ GNHDM + + P
Sbjct: 57 TQNTM-NFVREKIFDLLKEAGITLHVLVGNHDMYYKNTIRP 96
>gnl|CDD|221807 pfam12850, Metallophos_2, Calcineurin-like phosphoesterase
superfamily domain. Members of this family are part of
the Calcineurin-like phosphoesterase superfamily.
Length = 146
Score = 29.5 bits (67), Expect = 1.1
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 34/95 (35%)
Query: 14 KAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQ-PEHIFVLGDLLDEGQYVGG 72
K I+DTH D L A+ + + I GDL VG
Sbjct: 2 KIAIISDTHG-------NLDALEA----------ALEDLKGVDLIIHAGDL------VGP 38
Query: 73 EDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHY 107
+ + + ++ V GN+D
Sbjct: 39 NEVLDLLADI----------PVYAVRGNNDGDEDL 63
>gnl|CDD|224230 COG1311, HYS2, Archaeal DNA polymerase II, small subunit/DNA
polymerase delta, subunit B [DNA replication,
recombination, and repair].
Length = 481
Score = 30.4 bits (69), Expect = 1.1
Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 18/108 (16%)
Query: 6 SPESINNIKAIFIADTHLLG-PFRGHWFDKLRREWQMYKTFQTAVAL-HQPEHIFVLGDL 63
+ + I+D H F F+K L + +++ + GD+
Sbjct: 219 NNTGDERVYVALISDIHRGSKEFLEDEFEK------FIDWLNGPGDLASRVKYLIIAGDV 272
Query: 64 LDE-GQYVGGED-------FDNYVRRFYSLFS-TPDGTELHVVPGNHD 102
+D G Y G E+ ++ Y P+ ++ ++PGNHD
Sbjct: 273 VDGIGIYPGQEEELVIADIYEQY-EELAEFLDQVPEHIKVFIMPGNHD 319
>gnl|CDD|226673 COG4220, COG4220, Phage DNA packaging protein, Nu1 subunit of
terminase [DNA replication, recombination, and repair].
Length = 174
Score = 29.8 bits (67), Expect = 1.3
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 195 LYRESDEECSGPDSAPDIEKRKKFRQRWE 223
Y E E + D D+E+ ++ R+R
Sbjct: 53 WYAERAAEVAAGDLRDDVEELREARERHR 81
>gnl|CDD|99810 cd06214, PA_degradation_oxidoreductase_like, NAD(P) binding domain
of ferredoxin reductase like phenylacetic acid (PA)
degradation oxidoreductase. PA oxidoreductases of E.
coli hydroxylate PA-CoA in the second step of PA
degradation. Members of this group typically fuse a
ferredoxin reductase-like domain with an iron-sulfur
binding cluster domain. Ferredoxins catalyze electron
transfer between an NAD(P)-binding domain of the
alpha/beta class and a discrete (usually N-terminal)
domain which vary in orientation with respect to the
NAD(P) binding domain. The N-terminal portion may
contain a flavin prosthetic group, as in flavoenzymes,
or use flavin as a substrate. Ferredoxin-NADP+
(oxido)reductase is an FAD-containing enzyme that
catalyzes the reversible electron transfer between
NADP(H) and electron carrier proteins such as ferredoxin
and flavodoxin. Isoforms of these flavoproteins (i.e.
having a non-covalently bound FAD as a prosthetic group)
are present in chloroplasts, mitochondria, and bacteria
and participate in a wide variety of redox metabolic
pathways. The C-terminal domain contains most of the
NADP(H) binding residues and the N-terminal domain
interacts non-covalently with the isoalloxazine rings of
the flavin molecule which lies largely in a large gap
betweed the two domains. Ferredoxin-NADP+ reductase
first accepts one electron from reduced ferredoxin to
form a flavin semiquinone intermediate. The enzyme then
accepts a second electron to form FADH2 which then
transfers two electrons and a proton to NADP+ to form
NADPH.
Length = 241
Score = 29.4 bits (67), Expect = 1.6
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 26/82 (31%)
Query: 47 TAVALHQPEHIFVLGDLLD--EGQYV------GGEDFDNYVRRFYSLFSTPDGTELHV-- 96
++ PE L D GQ++ GE+ VRR YS+ S+P EL +
Sbjct: 17 VSITFDVPEE---LRDAFRYRPGQFLTLRVPIDGEE----VRRSYSICSSPGDDELRITV 69
Query: 97 --VPGNHDMGFHYRLHPYLNDR 116
VPG G R + ND
Sbjct: 70 KRVPG----G---RFSNWANDE 84
>gnl|CDD|163629 cd07386, MPP_DNA_pol_II_small_archeal_C, archeal DNA polymerase II,
small subunit, C-terminal metallophosphatase domain.
The small subunit of the archeal DNA polymerase II
contains a C-terminal metallophosphatase domain. This
domain is thought to be functionally active because the
active site residues required for phosphoesterase
activity in other members of this superfamily are
intact. The archeal replicative DNA polymerases are
thought to possess intrinsic phosphatase activity that
hydrolyzes the pyrophosphate released during nucleotide
polymerization. This domain belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 243
Score = 29.6 bits (67), Expect = 1.9
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 23/103 (22%)
Query: 55 EHIFVLGDLLDE-GQYVGGED-------FDNYVRRFYSLFS-TPDGTELHVVPGNHDMGF 105
+++ + GDL+D G Y G E+ ++ Y S P ++ ++PGNHD
Sbjct: 37 KYLIIAGDLVDGIGVYPGQEEELEILDIYEQY-EEAAEYLSDVPSHIKIIIIPGNHDAVR 95
Query: 106 HYRLHPYLNDRFSRAF---------NSSMVKLLSIKGSYFVLI 139
P L + + F N ++VK+ VLI
Sbjct: 96 QAEPQPALPEEIRKLFLPGNVEFVSNPALVKI----HGVDVLI 134
>gnl|CDD|106978 PHA00670, PHA00670, hypothetical protein.
Length = 540
Score = 29.4 bits (66), Expect = 2.3
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 8/29 (27%)
Query: 213 EKRKKFRQRWECISKESTDMLLDYLNPRL 241
+R+ W+ IS DY+ PR
Sbjct: 15 TERQSVESHWDEIS--------DYIMPRR 35
>gnl|CDD|235630 PRK05865, PRK05865, hypothetical protein; Provisional.
Length = 854
Score = 29.2 bits (65), Expect = 2.9
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 70 VGGEDFDNYVRRFYSLFSTPDGT 92
+ G + DN+V+R ++L P G
Sbjct: 128 IFGRNVDNWVQRLFALPVLPAGY 150
>gnl|CDD|143305 cd05897, Ig2_IL1R2_like, Second immunoglobulin (Ig)-like domain of
interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like:
domain similar to the second immunoglobulin (Ig)-like
domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha
and IL-1 beta are cytokines which participate in the
regulation of inflammation, immune responses, and
hematopoiesis. These cytokines bind to the IL-1 receptor
type 1 (IL1R1), which is activated on additional
association with an accessory protein, IL1RAP. IL-1 also
binds the type II (IL1R2) represented in this group.
Mature IL1R2 consists of three IG-like domains, a
transmembrane domain, and a short cytoplasmic domain. It
lacks the large cytoplasmic domain of Mature IL1R1, and
does not initiate signal transduction. A naturally
occurring cytokine IL-1RA (IL-1 receptor antagonist) is
widely expressed and binds to IL-1 receptors, inhibiting
the binding of IL-1 alpha and IL-1 beta.
Length = 95
Score = 27.0 bits (60), Expect = 3.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 127 KLLSIKGSYFVLINSMALEGDGCFLCK 153
K S+KGS ++ I ++L G + CK
Sbjct: 47 KFYSLKGSTYLHIIDVSLNDSGYYTCK 73
>gnl|CDD|233056 TIGR00619, sbcd, exonuclease SbcD. All proteins in this family for
which functions are known are double-stranded DNA
exonuclease (as part of a complex with SbcC homologs).
This complex functions in the initiation of
recombination and recombinational repair and is
particularly important in regulating the stability of
DNA sections that can form secondary structures. This
family is likely homologous to the MRE11 family. This
family is based on the phylogenomic analysis of JA Eisen
(1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 253
Score = 27.8 bits (62), Expect = 5.7
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 16/64 (25%)
Query: 55 EHIFVLGDLLD---EGQY----VGGEDFD-----NYVRRFYSLF----STPDGTELHVVP 98
E L DLL+ Q V G+ FD + ++ F S + + V+
Sbjct: 23 EQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVIS 82
Query: 99 GNHD 102
GNHD
Sbjct: 83 GNHD 86
>gnl|CDD|193571 cd08660, M20_Acy1_like, M20 Peptidase Aminoacylase 1-like family.
This family includes aminoacylase 1 (ACY1) and
Aminoacylase 1-like protein 2 (ACY1L2). Aminoacylase 1
proteins are a class of zinc binding homodimeric enzymes
involved in hydrolysis of N-acetylated proteins. ACY1
(acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) is the
most abundant of the aminoacylases, a class of zinc
binding homodimeric enzymes involved in hydrolysis of
N-acetylated proteins. It is encoded by the aminoacylase
1 gene (Acy1) on chromosome 3p21 that comprises 15
exons. N-terminal acetylation of proteins is a
widespread and highly conserved process that is involved
in protection and stability of proteins. Several types
of aminoacylases can be distinguished on the basis of
substrate specificity; substrates include indoleacetic
acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino
acids and aminobenzoylglutamate. ACY1 breaks down
cytosolic aliphatic N-acyl-alpha-amino acids (except
L-aspartate), especially N-acetyl-methionine and
acetyl-glutamate into L-amino acids and an acyl group.
However, ACY1 can also catalyze the reverse reaction,
the synthesis of acetylated amino acids. ACY1L2 family
contains many uncharacterized proteins predicted as
amidohydrolases, including gene products of abgA and
abgB that catalyze the cleavage of
p-aminobenzoyl-glutamate, a folate catabolite in E.
coli, to p-aminobenzoate and glutamate.
p-Aminobenzoyl-glutamate utilization is catalyzed by the
abg region gene product, AbgT. Defects in ACY1 are the
cause of aminoacylase-1 deficiency (ACY1D) resulting in
a metabolic disorder manifesting with encephalopathy and
psychomotor delay.
Length = 363
Score = 27.9 bits (62), Expect = 6.0
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 10/58 (17%)
Query: 41 MYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNY---VRRFYSLFSTPDGTELH 95
+ K + A + + GGEDF Y + F+ F T E H
Sbjct: 295 LLKAAKEVGAR-------LGYQTVHAEPSPGGEDFALYSEKIPGFFVWFGTGGNAEWH 345
>gnl|CDD|182871 PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.
Length = 407
Score = 28.0 bits (63), Expect = 6.7
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 49 VALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLF---STPDGTELHVVPGNHD 102
V HQ + I V GD+ D G +Y R Y+ F G +L V+ GNHD
Sbjct: 35 VQEHQVDAIIVAGDIFDTGSP------PSYARELYNRFVVNLQQTGCQLVVLAGNHD 85
>gnl|CDD|232895 TIGR00254, GGDEF, diguanylate cyclase (GGDEF) domain. The GGDEF
domain is named for the motif GG[DE]EF shared by many
proteins carrying the domain. There is evidence that
the domain has diguanylate cyclase activity. Several
proteins carrying this domain also carry domains with
functions relating to environmental sensing. These
include PleD, a response regulator protein involved in
the swarmer-to-stalked cell transition in Caulobacter
crescentus, and FixL, a heme-containing oxygen sensor
protein [Regulatory functions, Small molecule
interactions, Signal transduction, Other].
Length = 165
Score = 27.3 bits (61), Expect = 8.0
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 28 RGHWFDKLRREWQMYKTFQTAVAL 51
R + + L E + + FQ + ++
Sbjct: 13 RRYLEEMLDSELKRARRFQRSFSV 36
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein;
Provisional.
Length = 267
Score = 27.5 bits (62), Expect = 8.9
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 23 LLGPFRGHWFDKLRRE 38
LLG GH FDK R
Sbjct: 23 LLGLLIGHMFDKARSR 38
>gnl|CDD|163639 cd07396, MPP_Nbla03831, Homo sapiens Nbla03831 and related
proteins, metallophosphatase domain. Nbla03831 (also
known as LOC56985) is an uncharacterized Homo sapiens
protein with a domain that belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 267
Score = 27.3 bits (61), Expect = 9.0
Identities = 47/266 (17%), Positives = 75/266 (28%), Gaps = 73/266 (27%)
Query: 52 HQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHP 111
+ + LGD++D E D V P +H V GNHD+
Sbjct: 39 ESLDFVVQLGDIIDGDNARAEEALDA-VLAILDRLKGP----VHHVLGNHDL-------- 85
Query: 112 YLNDRFSRAFNSSMVKL--------LSIKGSYFVLINSMALEGDGCFLCKPAQDRISLIS 163
SR + L S G F++++ + G P + S
Sbjct: 86 ---YNPSREYLLLYTLLGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDNS 142
Query: 164 AKLKCCRKDRECPKSMKL-GSYSQP-------------------IILQHFPLYRESDEEC 203
P+ + G + II HFPL+
Sbjct: 143 NLG----LYLSEPRFVDWNGGIGEEQLQWLRNELQEADANGEKVIIFSHFPLH------- 191
Query: 204 SGPDSAPDIEKRKKFRQRWECI---SKESTDMLLDYLNPRLVIDGHTHNGCHKYHAYGKV 260
P+S + +E +L Y + I GH H G Y +
Sbjct: 192 --PESTSP-----------HGLLWNHEEVLSILRAYGCVKACISGHDHEG--GYAQRHGI 236
Query: 261 HEYTVPSFSWRNKNNPSFLMGYVVEN 286
H T+ + +F + V E+
Sbjct: 237 HFLTLEGMVETPPESNAFGVVIVYED 262
>gnl|CDD|180565 PRK06450, PRK06450, threonine synthase; Validated.
Length = 338
Score = 27.4 bits (61), Expect = 9.7
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 165 KLKC--CRKDRECPKSMKLGSYSQPI-ILQHFPLYRESDEECSGPDSAPDIEKRKKFRQR 221
K C C K+RE ++ P IL F + + + P I+ +
Sbjct: 3 KEVCMKCGKERESIYEIRCKKCGGPFEILIDFEFDKNLER-----KNFPYIKHFISLGEG 57
Query: 222 WE-CISKESTDMLLDYLNP 239
I K + LD+LNP
Sbjct: 58 RTPLIKKGNIWFKLDFLNP 76
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.447
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,204,794
Number of extensions: 1436588
Number of successful extensions: 1191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1167
Number of HSP's successfully gapped: 50
Length of query: 293
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 197
Effective length of database: 6,679,618
Effective search space: 1315884746
Effective search space used: 1315884746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)