RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2930
(293 letters)
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria
monocytogenes}
Length = 443
Score = 54.0 bits (129), Expect = 2e-08
Identities = 48/299 (16%), Positives = 88/299 (29%), Gaps = 55/299 (18%)
Query: 4 PASPESINNIKAIFIADTHLLGPF---RGHWFDKLRRE---------WQMYKTFQTAVAL 51
A E N+ + D H P G F+K ++ F V
Sbjct: 31 TAPIEKDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVES 90
Query: 52 HQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHP 111
+ + + + GDL + G+ E+ + + GT++ VVPGNHD+ +
Sbjct: 91 KKTDVLIISGDLTNNGEKTSHEELAKKLTQVEKN-----GTQVFVVPGNHDI-NNPWARK 144
Query: 112 YLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDR--ISLISAKLKCC 169
+ D+ S I + + E +L P+ + L +A K
Sbjct: 145 FEKDKQLPTDTISPTDFSKIYSDFGYEDAISSDEFSLSYLAAPSSKVWLLMLDTAIYKTN 204
Query: 170 RKDRECPKSMKLGSY----------------SQPIILQHFPLYRESDEECSGPDSAPDIE 213
+ L + ++ I + H L +D G I
Sbjct: 205 MQQGNPTTEGGLTAGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQKGYT----IN 260
Query: 214 KRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHN---GCHKYHAYGKVHEYTVPSFS 269
++ D L + + GH H K ++ + + S
Sbjct: 261 YNQQVI-----------DALTEG-AMDFSLSGHIHTQNIRSAKSTDGKEITDIVTNALS 307
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase,
phosphatase, metal ION; 1.90A {Enterobacter aerogenes}
SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Length = 274
Score = 44.0 bits (104), Expect = 2e-05
Identities = 37/251 (14%), Positives = 77/251 (30%), Gaps = 43/251 (17%)
Query: 18 IADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALH-QPEHIFVLGDLLDEGQYVGGEDFD 76
I+DTH + + AL +P+ + V GD+++ G+ +
Sbjct: 6 ISDTHFRSR-GEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVAR 64
Query: 77 NYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIKGSYF 136
+ L+++PGNHD + + + ++M + +
Sbjct: 65 QILGSL--------NYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRL 116
Query: 137 VLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLY 196
+ I+S +L + IS + A+L + + P I H P
Sbjct: 117 LFIDSSRAGTSKGWLT---DETISWLEAQLF---EGGDKPA----------TIFMHHPPL 160
Query: 197 RESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKYHA 256
+ D E + ++ + + + GH H+
Sbjct: 161 ---PLGNAQMD-PIACENGHRLL-----------ALVERFPSLTRIFCGHNHSLTMT--Q 203
Query: 257 YGKVHEYTVPS 267
Y + T+P
Sbjct: 204 YRQALISTLPG 214
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold,
swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium
tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Length = 330
Score = 43.7 bits (103), Expect = 4e-05
Identities = 40/273 (14%), Positives = 80/273 (29%), Gaps = 56/273 (20%)
Query: 12 NIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL-----HQPEHIFVLGDLLDE 66
+ + I+DTHL+G R + + +P+ I GDL D+
Sbjct: 25 DYVLLHISDTHLIGGDRRLY-----GAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADK 79
Query: 67 GQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSS-- 124
G+ + +R F+ G EL V GNHD L S
Sbjct: 80 GEP---AAYRK-LRGLVEPFAAQLGAELVWVMGNHD------DRAELRKFLLDEAPSMAP 129
Query: 125 MVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSY 184
+ ++ I G +++++ + ++ ++ +L D
Sbjct: 130 LDRVCMIDGLRIIVLDTSVPGHHHGEIR---ASQLGWLAEELATPAPD------------ 174
Query: 185 SQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVID 244
I+ H P I E + + +L + R ++
Sbjct: 175 -GTILALHHPP----------------IPSVLDMAVTVELRDQAALGRVLRGTDVRAILA 217
Query: 245 GHTHNGCHKYHAYGKVHEYTVPSFSWRNKNNPS 277
GH H + + + + + +
Sbjct: 218 GHLHYSTNAT--FVGIPVSVASATCYTQDLTVA 248
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase,
metalloprotein, metallophosphoesterase, protein
structure initiative; 1.70A {Danio rerio} SCOP:
d.159.1.12
Length = 322
Score = 42.2 bits (98), Expect = 1e-04
Identities = 38/320 (11%), Positives = 82/320 (25%), Gaps = 73/320 (22%)
Query: 17 FIADTHLLGPFRGHWFDK-----LRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVG 71
IAD G + + R + + + + + LGD++D G
Sbjct: 10 LIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRRERVQCVVQLGDIID-GHNRR 68
Query: 72 GEDFDNYVRRFYSLFSTPDGTELHVVPGNHDM----------GFHYRLHPYLNDRFSRAF 121
+ D + + +H V GNH+ D S
Sbjct: 69 RDASDRALDTVMAELDACSVD-VHHVWGNHEFYNFSRPSLLSSRLNSAQRTGTDTGSDLI 127
Query: 122 NSSM--VKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDRECPKSM 179
+ + FVL+++ D + + + S ++ ++
Sbjct: 128 GDDIYAYEFSPAPNFRFVLLDAY----DLSVIGREEESEKHTHSWRILTQHNHNLQDLNL 183
Query: 180 KLGSYSQP--------------------------------IILQHFPLYRESDEECSGPD 207
S +I H P++ + +
Sbjct: 184 PPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAADPICLAW 243
Query: 208 SAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPS 267
+ + +L + + I GH H+G + G T+
Sbjct: 244 NHEAV-----------------LSVLRSHQSVLCFIAGHDHDGGRCTDSSG-AQHITLEG 285
Query: 268 FSWRNKNNPSFLMGYVVENS 287
++ +F Y+ E+
Sbjct: 286 VIETPPHSHAFATAYLYEDR 305
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.002
Identities = 43/317 (13%), Positives = 89/317 (28%), Gaps = 90/317 (28%)
Query: 1 CNWPASPESINNIKAIFIADTHLLGPFRGHWF-DKLRR--EWQMYKTFQTAVALHQPEHI 57
NW + + +NI R H +LRR + + Y+ L
Sbjct: 211 PNWTSRSDHSSNI------------KLRIHSIQAELRRLLKSKPYEN-----CL------ 247
Query: 58 FVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPD---------GTELHVVPGNHDMGFHYR 108
VL ++ + + F+ + L +T T H+ +H M
Sbjct: 248 LVLLNVQNAKAW---NAFNLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-- 299
Query: 109 LHPYLNDRFSRAFNSSMVKL--LSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKL 166
+ + + L + + +S+I+ +
Sbjct: 300 -PDEVKSLLLKYLDCRPQDLPREVLTTNPRR---------------------LSIIAESI 337
Query: 167 K--CCRKDR-ECPKSMKLGSYSQPIILQHFP-LYRESDEECSG-PDSAPDIEKRKKFRQR 221
+ D + KL + + + P YR+ + S P SA I
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IP-TILLSLI 395
Query: 222 WECISKESTDMLLDYLNPRLVIDGHTHNGCHKYHAY-----------GKVH-----EYTV 265
W + K ++++ L+ +++ + +H Y +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 266 PSFSWRNKNNPSFLMGY 282
P + P +L Y
Sbjct: 456 PKTFDSDDLIPPYLDQY 472
Score = 29.4 bits (65), Expect = 1.5
Identities = 24/145 (16%), Positives = 39/145 (26%), Gaps = 57/145 (39%)
Query: 15 AIFIADTH----LLGPFRGHWFDKLRREWQ-MYKTFQ--TAVALHQPEHIFVLGDLLDE- 66
++F H LL WFD ++ + + + V E + + E
Sbjct: 379 SVFPPSAHIPTILLSLI---WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 67 ---------------GQYVGGEDF----------DNYVRRFYSLFSTPDGTELHVVPGNH 101
Y + F D Y FYS H+ G+H
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY---FYS----------HI--GHH 480
Query: 102 ----DMGFHYRLHP--YLNDRFSRA 120
+ L +L+ RF
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQ 505
>3av0_A DNA double-strand break repair protein MRE11; DNA repair,
calcineurin-like phosphoesterase, ABC transporte
domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus
jannaschii} PDB: 3auz_A*
Length = 386
Score = 35.2 bits (81), Expect = 0.021
Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 26/98 (26%)
Query: 16 IFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHI-FVL--GDLLDEGQYVGG 72
+ IAD HL R + +Y +F+ + VL GDL
Sbjct: 24 VHIADNHLGYRQYNL---DDREK-DIYDSFKLCIKKILEIKPDVVLHSGDL--------- 70
Query: 73 EDFDNY------VRRFYSLFSTPDGTELHVV--PGNHD 102
F++ +R F + V GNH+
Sbjct: 71 --FNDLRPPVKALRIAMQAFKKLHENNIKVYIVAGNHE 106
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.067
Identities = 56/348 (16%), Positives = 93/348 (26%), Gaps = 143/348 (41%)
Query: 3 WPASPESINNIKAIFIADTHLLGPFRG-----HWFDKLRREWQMYKTFQTAVALHQPEHI 57
+ A E + AIF G G +F++LR +Q Y
Sbjct: 146 FRAVGEGNAQLVAIF-------G---GQGNTDDYFEELRDLYQTYHVL------------ 183
Query: 58 FVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRF 117
+GDL+ L T E G + + +L +
Sbjct: 184 --VGDLIKFSA-----------ETLSELIRTTLDAEKV-----FTQGLN--ILEWLENPS 223
Query: 118 SR---AFNSSMVKLLSIKGSYFVLINSMALEGDGCFL--CK-----PAQ--DRIS----- 160
+ + LLSI S LI + L ++ K P + +
Sbjct: 224 NTPDKDY------LLSIPIS-CPLIGVIQL---AHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 161 ---LISAKLKCCRKDRE-----CPKSMKL----GSYSQPIILQHFP-------LYRESDE 201
L++A E K++ + G + +P + +S E
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY----EAYPNTSLPPSILEDSLE 329
Query: 202 ECSGPDSAP-----DIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTH----NG-- 250
G S P + +++E ++ N L NG
Sbjct: 330 NNEGVPS-PMLSISN-------------LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 251 -----------------CHKYHAYGKVHEYTVPSFSWRNKNNPS--FL 279
K A + + +P FS R K S FL
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP-FSER-KLKFSNRFL 421
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid
phosphatase metalloenzyme, uteroferrin, hydrolase; HET:
NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A*
2bq8_X 1qfc_A* 1qhw_A*
Length = 313
Score = 33.5 bits (76), Expect = 0.072
Identities = 40/244 (16%), Positives = 71/244 (29%), Gaps = 51/244 (20%)
Query: 36 RREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGED--FDNYVRRFYSLFSTPDGTE 93
RE K T V + I LGD +D F +S S +
Sbjct: 26 AREMANAKAIATTVKTLGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRN-VP 84
Query: 94 LHVVPGNHDMGFHYRLH--------------PYLNDRFSRAFNSSMVKLLSIKGSYFVLI 139
HV+ GNHD + PY RF ++ V + +
Sbjct: 85 WHVLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFKIPRSNVSVAIFMLDTVTLCGN 144
Query: 140 --NSMALEGDGCFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYR 197
+ ++ + + A+ +++ I +L ++D ++ H+P++
Sbjct: 145 SDDFVSQQPERPRNLALARTQLAWIKKQLAAAKEDYV-------------LVAGHYPVW- 190
Query: 198 ESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCHKYHAY 257
S + P K+ LL + GH HN +
Sbjct: 191 ------SIAEHGPTHCLVKQL------------LPLLTTHKVTAYLCGHDHNLQYLQDEN 232
Query: 258 GKVH 261
G
Sbjct: 233 GLGF 236
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.14
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 23/44 (52%)
Query: 177 KSMK-LGSYSQPIILQHFPLYRESDEECSGPDSAP------DIE 213
+++K L + S L+ LY DSAP +E
Sbjct: 20 QALKKLQA-S----LK---LY--------ADDSAPALAIKATME 47
Score = 27.2 bits (59), Expect = 4.1
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 38 EWQMYKTFQTAVALHQPE 55
E Q K Q ++ L+ +
Sbjct: 18 EKQALKKLQASLKLYADD 35
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 458
Score = 32.4 bits (74), Expect = 0.19
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 12/73 (16%)
Query: 41 MYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVP-- 98
+ + +T P I +L L E G D + F + + +VP
Sbjct: 80 VVEALKTICERQNPSVIGLLTTGLSE---TQGCDLHTALHEFRTQYEEYKDV--PIVPVN 134
Query: 99 -----GNHDMGFH 106
G + GF
Sbjct: 135 TPDFSGCFESGFA 147
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 32.0 bits (73), Expect = 0.21
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 41 MYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVP-- 98
M Q A AL++PE I V + E V G+D ++ V
Sbjct: 129 MNLGLQNASALYKPEIIAVSTTCMAE---VIGDDLQAFIANAKKDGFVDSSI--AVPHAH 183
Query: 99 -----GNHDMGFH 106
G+H G+
Sbjct: 184 TPSFIGSHVTGWD 196
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32
chimeric protein; DNA double-strand break repair,
nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe}
PDB: 4fbq_A*
Length = 472
Score = 31.8 bits (71), Expect = 0.27
Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 10/114 (8%)
Query: 4 PASPESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL---HQPEHIFVL 60
S S N I+ + +D H+ G+ R + +F + + + I +
Sbjct: 68 AGSAGSENTIRILISSDPHV-----GYGEKDPVRGNDSFVSFNEILEIARERDVDMILLG 122
Query: 61 GDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLN 114
GD+ + + + +R EL ++ + + +N
Sbjct: 123 GDIFHDNK-PSRKALYQALRSLRLNCLGDKPCELELL-SDTSLTTGDTAVCNIN 174
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.10A {Thermus
thermophilus} SCOP: d.159.1.6
Length = 228
Score = 31.3 bits (70), Expect = 0.29
Identities = 26/199 (13%), Positives = 45/199 (22%), Gaps = 39/199 (19%)
Query: 53 QPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPY 112
+ I ++G+L+ +Y F L VPG D L
Sbjct: 32 GADAIALIGNLMP-----KAAKSRDYAAFFRILSEA--HLPTAYVPGPQDAPIWEYLREA 84
Query: 113 LNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKD 172
N ++ ++ ++ + G G + + L+
Sbjct: 85 ANVELVHP------EMRNVHETFTFWRGPYLVAGVGGEIADEGEPEEHEA---LRYPAWV 135
Query: 173 RECPKSMKLGSYSQPIIL-QHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTD 231
E P I H Y + E
Sbjct: 136 AEYRLKALWELKDYPKIFLFHTMPYHKGLNE----------------------QGSHEVA 173
Query: 232 MLLDYLNPRLVIDGHTHNG 250
L+ NP LV+
Sbjct: 174 HLIKTHNPLLVLVAGKGQK 192
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease,
hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe}
PDB: 4fcx_B*
Length = 417
Score = 31.4 bits (70), Expect = 0.31
Identities = 14/111 (12%), Positives = 35/111 (31%), Gaps = 10/111 (9%)
Query: 7 PESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL---HQPEHIFVLGDL 63
+ N I+ + +D H+ G+ R + +F + + + I + GD+
Sbjct: 8 LHNENTIRILISSDPHV-----GYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDI 62
Query: 64 LDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLN 114
+ + + +R L D + + + +N
Sbjct: 63 FHDNK-PSRKALYQALRSL-RLNCLGDKPCELELLSDTSLTTGDTAVCNIN 111
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP;
3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 458
Score = 31.5 bits (72), Expect = 0.32
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 41 MYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVP-- 98
+ + +L+ P+ I V L E G+D Y+ + S P+G V+
Sbjct: 84 IKTAVKNIFSLYNPDIIAVHTTCLSE---TLGDDLPTYISQMEDAGSIPEGKL--VIHTN 138
Query: 99 -----GNHDMGFH 106
G+H GF
Sbjct: 139 TPSYVGSHVTGFA 151
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown
function, NPPSFA, national PROJ protein structural and
functional analyses; 1.60A {Aquifex aeolicus} SCOP:
d.159.1.6
Length = 260
Score = 30.9 bits (69), Expect = 0.36
Identities = 29/257 (11%), Positives = 66/257 (25%), Gaps = 59/257 (22%)
Query: 14 KAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLD-------- 65
K + I + + + + +A QP+ + V+G++L
Sbjct: 7 KVLAIKNFKE--------------RFDLLPKLKGVIAEKQPDILVVVGNILKNEALEKEY 52
Query: 66 ------------EGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYL 113
+ + + +F+ G + VVPG +D L
Sbjct: 53 ERAHLARREPNRKVIHENEHYIIETLDKFFREIGEL-GVKTFVVPGKNDAPLKIFLRAAY 111
Query: 114 NDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDR 173
+ + + + + G G L + + ++
Sbjct: 112 EAETAYP------NIRVLHEGFAGWRGEFEVIGFGGLLTEHEFEEDFVLKYPRW---YVE 162
Query: 174 ECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDML 233
K + + + + + P D ++ +
Sbjct: 163 YILKFVNELKPRRLVTIFYTPPI----------GEFVDRTPEDPKHHGSAVVNT-----I 207
Query: 234 LDYLNPRLVIDGHTHNG 250
+ LNP + I GH G
Sbjct: 208 IKSLNPEVAIVGHVGKG 224
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex,
metallophosphatase, exonuclease, endonuclease, RAD50,
NBS1, hydrolase; 3.00A {Homo sapiens}
Length = 431
Score = 31.0 bits (69), Expect = 0.41
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 10/107 (9%)
Query: 11 NNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL---HQPEHIFVLGDLLDEG 67
N K + D HL G R + T + L ++ + I + GDL E
Sbjct: 31 NTFKILVATDIHL-----GFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGDLFHEN 85
Query: 68 QYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLN 114
+ + + D + + + F + P++N
Sbjct: 86 KP--SRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVN 130
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B*
1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B*
3k1a_B* 3min_B*
Length = 523
Score = 31.3 bits (71), Expect = 0.45
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 12/73 (16%)
Query: 41 MYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVP-- 98
M Q A ++P+ I V + E V G+D + ++ PD V
Sbjct: 131 MKDGLQNCKATYKPDMIAVSTTCMAE---VIGDDLNAFINNSKKEGFIPDE--FPVPFAH 185
Query: 99 -----GNHDMGFH 106
G+H G+
Sbjct: 186 TPSFVGSHVTGWD 198
>2q8u_A Exonuclease, putative; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima
MSB8} PDB: 3thn_A
Length = 336
Score = 30.4 bits (69), Expect = 0.58
Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 9/94 (9%)
Query: 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL---HQPEHIFVLGDLLDEGQY 69
+K + +D HL RRE K V + + I + GDLL
Sbjct: 19 LKILHTSDWHLGVTSWTSSRPVDRREEL-KKALDKVVEEAEKREVDLILLTGDLLHSRNN 77
Query: 70 VGGEDFDNYVRRFYSLFST-PDGTELHVVPGNHD 102
+ + V+PGNHD
Sbjct: 78 PSVVA----LHDLLDYLKRMMRTAPVVVLPGNHD 107
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase,
PSI, protein structure initiative, midwest center for
structural genomics, MCSG; 2.25A {Escherichia coli}
SCOP: d.159.1.7
Length = 208
Score = 29.7 bits (67), Expect = 0.77
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 16/89 (17%)
Query: 14 KAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGE 73
K +F +D H G R +++ + + +LGD+L+ G
Sbjct: 27 KLMFASDIH------GS-LPATERVLELFA-------QSGAQWLVILGDVLNHGPRNALP 72
Query: 74 DFDNYVRRFYSLFSTPDGTELHVVPGNHD 102
+ + L ++ V GN D
Sbjct: 73 EGYAPAKVVERLNEVAH--KVIAVRGNCD 99
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins,
DNA breaks, DOUB stranded, DNA repair, DNA repair
enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB:
3qg5_C
Length = 379
Score = 30.1 bits (68), Expect = 0.88
Identities = 20/100 (20%), Positives = 29/100 (29%), Gaps = 21/100 (21%)
Query: 13 IKAIFIADTHLLG-PFRGHWFDKLRREWQMYKTFQTAVAL---HQPEHIFVLGDLLDEGQ 68
+K + +D HL G RRE K V + + I + GDLL
Sbjct: 1 MKILHTSDWHL-GVTSWTSSRPVDRREEL-KKALDKVVEEAEKREVDLILLTGDLLHSRN 58
Query: 69 YVGGEDFDNYVRRFYSLFSTPDGTELH------VVPGNHD 102
+ + V+PGN D
Sbjct: 59 NPSVVA----LHDLLDYL-----KRMMRTAPVVVLPGNQD 89
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase,
manganese, protein transport; 2.00A {Mus musculus} SCOP:
d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A
2r17_A
Length = 192
Score = 28.7 bits (64), Expect = 1.5
Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 26/94 (27%)
Query: 14 KAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGE 73
+ + D H P R + F+ + + +HI G+L + Y +
Sbjct: 12 LVLVLGDLH--IPHRCNSLPAK---------FKKLLVPGKIQHILCTGNLCTKESY---D 57
Query: 74 DFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHY 107
H+V G+ D +Y
Sbjct: 58 YLKTLAGDV------------HIVRGDFDENLNY 79
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP,
manganese, replication; HET: DA; 2.20A {Pyrococcus
furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Length = 333
Score = 28.6 bits (64), Expect = 2.1
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 26/96 (27%)
Query: 18 IADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHI-FVL--GDLLDEGQYVGGED 74
+AD HL R E + F+ A+ + E++ F+L GDL
Sbjct: 6 LADIHLGYEQFH---KPQREEEF-AEAFKNALEIAVQENVDFILIAGDL----------- 50
Query: 75 FDNY------VRRFYSLFSTPDGTELHVV--PGNHD 102
F + +++ +L P + V GNHD
Sbjct: 51 FHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGNHD 86
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding,
ferredoxin, NADH-binding, oxidoreductase; HET: FAD;
1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2
d.15.4.2
Length = 338
Score = 28.9 bits (65), Expect = 2.2
Identities = 12/37 (32%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 67 GQYVGGEDFDNYVRRFYSLFSTPDGT--ELHV--VPG 99
GQYV R YS S P V VP
Sbjct: 142 GQYVNVTLPGTTETRSYSFSSQPGNRLTGFVVRNVPQ 178
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold,
metallophosphodiesterase, active site mutan nucleotide
polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB:
3rl3_A* 3rl4_A*
Length = 296
Score = 28.4 bits (62), Expect = 3.0
Identities = 34/255 (13%), Positives = 69/255 (27%), Gaps = 53/255 (20%)
Query: 4 PASPESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDL 63
+P+ + + + I+DT + + + + + GD
Sbjct: 51 YDTPKPAGHTRFVCISDTR---------------------SRTDGIQMPYGDILLHTGDF 89
Query: 64 LDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNS 123
+ G + V++F V+ GNH++ F L + F S
Sbjct: 90 TELGLP-------SEVKKFNDWLGNLPYEYKIVIAGNHELTFDKEFMADLVKQDYYRFPS 142
Query: 124 S-------MVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDRECP 176
+ S+ + L +S P + L + +
Sbjct: 143 VSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGFRIYGAPWTPWFNGWGFNLPRGQSLLDKW 202
Query: 177 KSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDY 236
+ G+ I++ H P D +E ++R
Sbjct: 203 NLIPEGT---DILMTHGPPLGFRDWVPKELQRVGCVELLNTVQRRV-------------- 245
Query: 237 LNPRLVIDGHTHNGC 251
P+L + G H G
Sbjct: 246 -RPKLHVFGGIHEGY 259
>2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid
synthase, drug complex, tetrahydrolipstatin,
transferase; HET: DH9; 2.30A {Homo sapiens}
Length = 316
Score = 28.3 bits (63), Expect = 3.1
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 33 DKLRREWQMYKTFQTAVALHQPEHIFVLGDLL-----DEGQYVGGEDFDNYVRRFYSLFS 87
+L + + A + P+ + G+++ G Y D + +
Sbjct: 219 QELSFAARSFYYKLRAAEQYTPKAKYH-GNVMLLRAKTGGAYGEDLGADYNLSQV----- 272
Query: 88 TPDGTELHVVPGNHD 102
+HV+ G+H
Sbjct: 273 CDGKVSVHVIEGDHR 287
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A
{Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Length = 426
Score = 28.1 bits (62), Expect = 4.1
Identities = 31/249 (12%), Positives = 73/249 (29%), Gaps = 52/249 (20%)
Query: 53 QPEHIFVLGDLLDEGQYVGGED--FDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLH 110
+ + + +GDL ++ ++ +D + R + GNH++ + +
Sbjct: 154 KGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERSVAY---QPWIWTAGNHEIDYAPDIG 210
Query: 111 PYLN-----DRFS-----RAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRIS 160
Y +R+ + + ++ ++++S + +
Sbjct: 211 EYQPFVPFTNRYPTPHEASGSGDPLWYAIKRASAHIIVLSSYSGFVKY-------SPQYK 263
Query: 161 LISAKLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQ 220
+++L+ + I+L H PLY S + E R
Sbjct: 264 WFTSELEKVNRSE----------TPWLIVLVHAPLY------NSYEAHYMEGEA---MRA 304
Query: 221 RWECISKESTDMLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRNKNNPSFLM 280
+E Y +V GH H+ Y + + ++ S
Sbjct: 305 IFEP--------YFVYYKVDIVFSGHVHSYERSERVSN--VAYNIVNAKCTPVSDESA-P 353
Query: 281 GYVVENSSG 289
Y+ G
Sbjct: 354 VYITIGDGG 362
>1ji6_A Pesticidial crystal protein CRY3BB; toxin; 2.40A {Bacillus
thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Length = 589
Score = 27.9 bits (61), Expect = 4.9
Identities = 8/46 (17%), Positives = 18/46 (39%)
Query: 229 STDMLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRNKN 274
S D L + ++H + + T+P F+W +++
Sbjct: 392 SIDQLPPETTDEPLEKAYSHQLNYAECFLMQDRRGTIPFFTWTHRS 437
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin,
oxidoreductase, flavoprotein; HET: FAD; 1.70A
{Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A*
3fpk_A*
Length = 248
Score = 27.2 bits (61), Expect = 6.0
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 14/43 (32%)
Query: 67 GQYV------GGEDFDNYVRRFYSLFSTPDGTELHV----VPG 99
GQ+ GE V+R YS ++PD +L VP
Sbjct: 34 GQFTKLGLEIDGER----VQRAYSYVNSPDNPDLEFYLVTVPD 72
>1bby_A RAP30; average structure transcription regulation, DNA- binding
domain, transcription; NMR {Homo sapiens} SCOP:
a.4.5.15 PDB: 2bby_A
Length = 69
Score = 25.1 bits (55), Expect = 6.9
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 18 IADTHLLGPFRGHWFDKLRREWQMYK 43
I ++ G + W +L+ E++ Y+
Sbjct: 46 IGVQNVKGIHKNTW--ELKPEYRHYQ 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.447
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,685,020
Number of extensions: 276020
Number of successful extensions: 670
Number of sequences better than 10.0: 1
Number of HSP's gapped: 658
Number of HSP's successfully gapped: 41
Length of query: 293
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 200
Effective length of database: 4,105,140
Effective search space: 821028000
Effective search space used: 821028000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.4 bits)