RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2930
(293 letters)
>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog
zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}
Length = 320
Score = 48.2 bits (113), Expect = 4e-07
Identities = 37/300 (12%), Positives = 74/300 (24%), Gaps = 31/300 (10%)
Query: 16 IFIADTHL--LGPFRGHWFDKLRREWQMYKTFQTAVAL---HQPEHIFVLGDLLDEGQYV 70
IAD + + + R + AV + + + LGD++D
Sbjct: 7 GLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRRERVQCVVQLGDIIDGHNRR 66
Query: 71 GGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSS------ 124
+ ++H V GNH+ R + S +
Sbjct: 67 RDASDRAL-DTVMAELDA-CSVDVHHVWGNHEFYNFSRPSLLSSRLNSAQRTGTDTGSDL 124
Query: 125 ------MVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDR----- 173
+ FVL+++ L G I + +D
Sbjct: 125 IGDDIYAYEFSPAPNFRFVLLDAYDLSVIGREEESEKHTHSWRILTQHNHNLQDLNLPPV 184
Query: 174 ECPKSMKLGSYSQPIILQHFPLYRESDEECSGPD------SAPDIEKRKKFRQRWECISK 227
+ ++ Q S + +
Sbjct: 185 SVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAADPICLAWNHE 244
Query: 228 ESTDMLLDYLNPRLVIDGHTHNGCHKYHAYGKVHEYTVPSFSWRNKNNPSFLMGYVVENS 287
+L + + I GH H+G + G T+ ++ +F Y+ E+
Sbjct: 245 AVLSVLRSHQSVLCFIAGHDHDGGRCTDSSG-AQHITLEGVIETPPHSHAFATAYLYEDR 303
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ
{Enterobacter aerogenes [TaxId: 548]}
Length = 271
Score = 42.4 bits (98), Expect = 2e-05
Identities = 31/259 (11%), Positives = 64/259 (24%), Gaps = 43/259 (16%)
Query: 14 KAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALH-QPEHIFVLGDLLDEGQYVGG 72
I+DTH + + AL +P+ + V GD+++ G+
Sbjct: 2 LLAHISDTHFRSRGEKL-YGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEY 60
Query: 73 EDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLSIK 132
+ + L+++PGNHD F +L S
Sbjct: 61 QVARQILGSL--------NYPLYLIPGNHDD----------KALFLEYLQPLCPQLGSDA 102
Query: 133 GSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIILQH 192
+ ++ A + + L + I H
Sbjct: 103 NNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGG------DKPATIFMH 156
Query: 193 FPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNGCH 252
P + + ++ + + + GH H+
Sbjct: 157 HPPLPLGNAQM---------------DPIACENGHRLLALVERFPSLTRIFCGHNHSLTM 201
Query: 253 KYHAYGKVHEYTVPSFSWR 271
Y + T+P +
Sbjct: 202 --TQYRQALISTLPGTVHQ 218
>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide
phosphodiesterase {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 256
Score = 41.7 bits (96), Expect = 4e-05
Identities = 32/261 (12%), Positives = 67/261 (25%), Gaps = 44/261 (16%)
Query: 12 NIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALH-QPEHIFVLGDLLDEGQYV 70
+ + I+DTHL + + + ++ + + +P+ I GDL D+G+
Sbjct: 4 DYVLLHISDTHL-IGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPA 62
Query: 71 GGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPYLNDRFSRAFNSSMVKLLS 130
R F+ G EL V GNHD R + +
Sbjct: 63 AYRKL----RGLVEPFAAQLGAELVWVMGNHDDRAELRKFLLDEAPSMAPLDRVCM---- 114
Query: 131 IKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDRECPKSMKLGSYSQPIIL 190
+ + + + + I+
Sbjct: 115 ----------------IDGLRIIVLDTSVPGHHHGEIRASQLGWLAEELATPAPDGTILA 158
Query: 191 QHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLLDYLNPRLVIDGHTHNG 250
H P + E + + +L + R ++ GH H
Sbjct: 159 LHHPPIPSVLD----------------MAVTVELRDQAALGRVLRGTDVRAILAGHLHYS 202
Query: 251 CHKYHAYGKVHEYTVPSFSWR 271
+ + + + +
Sbjct: 203 TN--ATFVGIPVSVASATCYT 221
>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 333
Score = 40.1 bits (92), Expect = 2e-04
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 10/93 (10%)
Query: 13 IKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVAL---HQPEHIFVLGDLLDEGQY 69
+K +AD HL F K +RE + + F+ A+ + + I + GDL +
Sbjct: 1 MKFAHLADIHLGYEQ----FHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSR- 55
Query: 70 VGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHD 102
+ + + GNHD
Sbjct: 56 PSPGTLKKAIALLQ--IPKEHSIPVFAIEGNHD 86
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus
thermophilus [TaxId: 274]}
Length = 228
Score = 30.1 bits (66), Expect = 0.28
Identities = 21/201 (10%), Positives = 42/201 (20%), Gaps = 37/201 (18%)
Query: 48 AVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHY 107
+ I ++G+L+ + + + + VPG D
Sbjct: 27 LAPDTGADAIALIGNLMPKAAK-------SRDYAAFFRILSEAHLPTAYVPGPQDAPIWE 79
Query: 108 RLHPYLNDRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLK 167
L N ++ + ++ + G G + + L+
Sbjct: 80 YLREAANVELVHPEMRNVHE------TFTFWRGPYLVAGVGGEIADEGEPEEHEA---LR 130
Query: 168 CCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISK 227
E P I + G + K
Sbjct: 131 YPAWVAEYRLKALWELKDYPKIFLFHTMPYHKGLNEQGSHEVAHLIKTH----------- 179
Query: 228 ESTDMLLDYLNPRLVIDGHTH 248
NP LV+
Sbjct: 180 ----------NPLLVLVAGKG 190
>d1wlqc_ a.4.5.52 (C:) DNA replication factor Cdt1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 187
Score = 28.0 bits (62), Expect = 1.1
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 165 KLKCCRKDRECPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWEC 224
+ + S+K Y Q I PL + + + +++R+ FRQ
Sbjct: 83 RFRQECNVPTFKDSIKRSDY-QLTIE---PLLGQEAGGATQLTATCLLQRRQVFRQNLVE 138
Query: 225 ISKESTDMLLDYLNPRLVIDGH 246
KE + L LNP + +
Sbjct: 139 RVKEQHKVFLASLNPPMAVPDD 160
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956
{Aquifex aeolicus [TaxId: 63363]}
Length = 257
Score = 27.7 bits (60), Expect = 1.6
Identities = 30/256 (11%), Positives = 70/256 (27%), Gaps = 57/256 (22%)
Query: 14 KAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQY---- 69
K + I + + + + +A QP+ + V+G++L
Sbjct: 4 KVLAIKNFKE--------------RFDLLPKLKGVIAEKQPDILVVVGNILKNEALEKEY 49
Query: 70 ------------VGGEDFDNYVRRFYSLFSTP---DGTELHVVPGNHDMGFHYRLHPYLN 114
+ ++Y+ F G + VVPG +D +
Sbjct: 50 ERAHLARREPNRKVIHENEHYIIETLDKFFREIGELGVKTFVVPGKNDAPL------KIF 103
Query: 115 DRFSRAFNSSMVKLLSIKGSYFVLINSMALEGDGCFLCKPAQDRISLISAKLKCCRKDRE 174
R + ++ + + + + G G L + + ++
Sbjct: 104 LRAAYEAETAYPNIRVLHEGFAGWRGEFEVIGFGGLLTEHEFEEDFVLK---YPRWYVEY 160
Query: 175 CPKSMKLGSYSQPIILQHFPLYRESDEECSGPDSAPDIEKRKKFRQRWECISKESTDMLL 234
K + + + + + P E + + + ++
Sbjct: 161 ILKFVNELKPRRLVTIFYTPPIGEFVDRTPED---------------PKHHGSAVVNTII 205
Query: 235 DYLNPRLVIDGHTHNG 250
LNP + I GH G
Sbjct: 206 KSLNPEVAIVGHVGKG 221
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit
VIIa {Cow (Bos taurus) [TaxId: 9913]}
Length = 58
Score = 24.7 bits (54), Expect = 3.1
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 75 FDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRL 109
F+N V LF +G +H+ G D YR+
Sbjct: 1 FENRVAEKQKLFQEDNGLPVHLKGGATD-NILYRV 34
>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 69
Score = 25.0 bits (55), Expect = 3.3
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 18 IADTHLLGPFRGHWFDKLRREWQMYK 43
I ++ G + W +L+ E++ Y+
Sbjct: 46 IGVQNVKGIHKNTW--ELKPEYRHYQ 69
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB,
C-terminal domain {Aspergillus aculeatus [TaxId: 5053]}
Length = 171
Score = 26.3 bits (58), Expect = 3.3
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 252 HKYHAYGKVHEYTVPSFSWRNKNN 275
Y G+V++ ++PS + N
Sbjct: 119 GAYRGLGEVYDVSIPSGTIVAGTN 142
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli
[TaxId: 562]}
Length = 229
Score = 26.5 bits (57), Expect = 3.4
Identities = 7/67 (10%), Positives = 17/67 (25%), Gaps = 5/67 (7%)
Query: 36 RREWQMYKTFQTAVALHQPEHIFVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELH 95
+ + ++ + F + + ++ Y S E
Sbjct: 145 AEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKS----GARPEFM 200
Query: 96 VVPGNHD 102
V+ GN
Sbjct: 201 VI-GNMT 206
>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Cyanobacterium (Anabaena
sp.), pcc 7119 [TaxId: 1167]}
Length = 133
Score = 25.1 bits (54), Expect = 6.6
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 58 FVLGDLLDEGQYVGGEDFDNYVRRFYSLFSTPDG 91
++ G + ++ R YS+ ST G
Sbjct: 46 YIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHG 79
>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex
aeolicus [TaxId: 63363]}
Length = 188
Score = 25.5 bits (55), Expect = 7.6
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 17/105 (16%)
Query: 12 NIKAIFIADTHL----LGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGDLLDEG 67
N FI+DTH + E + + + ++ LGD
Sbjct: 1 NAMMYFISDTHFYHENIINLNP-EVRFKGFEIVILTNLLKVL--KPEDTLYHLGDF---- 53
Query: 68 QYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNHDMGFHYRLHPY 112
D + Y+R + +L +V GNHD +
Sbjct: 54 -TWHFNDKNEYLRIWKAL-----PGRKILVMGNHDKDKESLKEYF 92
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max)
[TaxId: 3847]}
Length = 304
Score = 25.4 bits (55), Expect = 8.3
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 114 NDRFSRAFNSSMVKLLSI 131
+ F F SM+K+ +I
Sbjct: 268 QNTFFSNFRVSMIKMGNI 285
>d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 286
Score = 25.5 bits (54), Expect = 8.4
Identities = 9/99 (9%), Positives = 24/99 (24%), Gaps = 8/99 (8%)
Query: 3 WPASPESINNIKAIFIADTHLLGPFRGHWFDKLRREWQMYKTFQTAVALHQPEHIFVLGD 62
+ I + L + + + + + +
Sbjct: 175 KGLEERVAAAVDLIIKSHQGLDRQELSFAARSFYYKLRAAEQYTPKAKYYGNVMLLRAKT 234
Query: 63 LLDEGQYVGGEDFDNYVRRFYSLFSTPDGTELHVVPGNH 101
G+ +G D + + +HV+ G+H
Sbjct: 235 GGAYGEDLGA---DYNLSQV-----CDGKVSVHVIEGDH 265
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.447
Gapped
Lambda K H
0.267 0.0399 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,183,731
Number of extensions: 57267
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 23
Length of query: 293
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 208
Effective length of database: 1,240,546
Effective search space: 258033568
Effective search space used: 258033568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.7 bits)