BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2931
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V3B6|CWC15_DROME Protein CWC15 homolog OS=Drosophila melanogaster GN=c12.1 PE=2
SV=1
Length = 259
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/59 (86%), Positives = 56/59 (94%)
Query: 1 MTTAARPTFEPARGGQGRGEKDLSAISKQYSSRDLPGHTKLKYREHGQGTNEELRSRDF 59
MTTAARPTF+PARGG GRGEKDLSA+SKQYSSRDLPGHTKLKYRE GQGT++E R+RDF
Sbjct: 1 MTTAARPTFDPARGGSGRGEKDLSALSKQYSSRDLPGHTKLKYRETGQGTSDENRNRDF 59
>sp|Q6IQU4|CWC15_DANRE Protein CWC15 homolog OS=Danio rerio GN=cwc15 PE=2 SV=1
Length = 243
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 53/59 (89%)
Query: 1 MTTAARPTFEPARGGQGRGEKDLSAISKQYSSRDLPGHTKLKYREHGQGTNEELRSRDF 59
MTTAARPTFEPARGG+G+GE DLSA+SKQYSSRDLPGHTK+KYR+ Q EE+R+RDF
Sbjct: 1 MTTAARPTFEPARGGRGKGEGDLSALSKQYSSRDLPGHTKIKYRQPTQDAPEEVRARDF 59
>sp|Q0VFP5|CWC15_XENTR Protein CWC15 homolog OS=Xenopus tropicalis GN=cwc15 PE=2 SV=1
Length = 227
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 51/59 (86%)
Query: 1 MTTAARPTFEPARGGQGRGEKDLSAISKQYSSRDLPGHTKLKYREHGQGTNEELRSRDF 59
MTTAARPTFEPARGG+G+GE DLS +SKQYSSRDLP HTK+KYR+ Q EE+RSRDF
Sbjct: 1 MTTAARPTFEPARGGRGKGEADLSQLSKQYSSRDLPSHTKIKYRQATQDAPEEVRSRDF 59
>sp|Q6DKE6|CW15B_XENLA Protein CWC15 homolog B OS=Xenopus laevis GN=cwc15-b PE=2 SV=1
Length = 230
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 51/59 (86%)
Query: 1 MTTAARPTFEPARGGQGRGEKDLSAISKQYSSRDLPGHTKLKYREHGQGTNEELRSRDF 59
MTTAARPTFEPARGG+G+GE DLS +SKQYSSRDLP HTK+KYR+ Q EE+RSRDF
Sbjct: 1 MTTAARPTFEPARGGRGKGESDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVRSRDF 59
>sp|Q6NUB2|CW15A_XENLA Protein CWC15 homolog A OS=Xenopus laevis GN=cwc15-a PE=2 SV=1
Length = 228
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 51/59 (86%)
Query: 1 MTTAARPTFEPARGGQGRGEKDLSAISKQYSSRDLPGHTKLKYREHGQGTNEELRSRDF 59
MTTAARPTFEPARGG+G+GE DLS +SKQYSSRDLP HTK+KYR+ Q EE+RSRDF
Sbjct: 1 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQATQDAPEEVRSRDF 59
>sp|O45766|CWC15_CAEEL Protein CWC15 homolog OS=Caenorhabditis elegans GN=T10C6.5 PE=3
SV=1
Length = 230
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 54/68 (79%)
Query: 1 MTTAARPTFEPARGGQGRGEKDLSAISKQYSSRDLPGHTKLKYREHGQGTNEELRSRDFR 60
MTTA RPTF PARGG RGE DLS +S QYSS+D+P HTK+KYR+ GQ T +LR +D R
Sbjct: 1 MTTAHRPTFHPARGGTARGEGDLSKLSNQYSSKDMPSHTKMKYRQTGQETEADLRKKDLR 60
Query: 61 KELEERER 68
+ELE++ER
Sbjct: 61 RELEDKER 68
>sp|Q2KJD3|CWC15_BOVIN Spliceosome-associated protein CWC15 homolog OS=Bos taurus
GN=CWC15 PE=2 SV=1
Length = 231
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 51/59 (86%)
Query: 1 MTTAARPTFEPARGGQGRGEKDLSAISKQYSSRDLPGHTKLKYREHGQGTNEELRSRDF 59
MTTAARPTFEPARGG+G+GE DLS +SKQYSSRDLP HTK+KYR+ Q EE+R+RDF
Sbjct: 1 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVRNRDF 59
>sp|Q5RE65|CWC15_PONAB Spliceosome-associated protein CWC15 homolog OS=Pongo abelii
GN=CWC15 PE=2 SV=1
Length = 229
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 51/59 (86%)
Query: 1 MTTAARPTFEPARGGQGRGEKDLSAISKQYSSRDLPGHTKLKYREHGQGTNEELRSRDF 59
MTTAARPTFEPARGG+G+GE DLS +SKQYSSRDLP HTK+KYR+ Q EE+R+RDF
Sbjct: 1 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVRNRDF 59
>sp|Q9P013|CWC15_HUMAN Spliceosome-associated protein CWC15 homolog OS=Homo sapiens
GN=CWC15 PE=1 SV=2
Length = 229
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 51/59 (86%)
Query: 1 MTTAARPTFEPARGGQGRGEKDLSAISKQYSSRDLPGHTKLKYREHGQGTNEELRSRDF 59
MTTAARPTFEPARGG+G+GE DLS +SKQYSSRDLP HTK+KYR+ Q EE+R+RDF
Sbjct: 1 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVRNRDF 59
>sp|Q5BJP2|CWC15_RAT Spliceosome-associated protein CWC15 homolog OS=Rattus norvegicus
GN=Cwc15 PE=2 SV=1
Length = 229
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 51/59 (86%)
Query: 1 MTTAARPTFEPARGGQGRGEKDLSAISKQYSSRDLPGHTKLKYREHGQGTNEELRSRDF 59
MTTAARPTFEPARGG+G+GE DLS +SKQYSSRDLP HTK+KYR+ Q EE+R+RDF
Sbjct: 1 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVRNRDF 59
>sp|Q9JHS9|CWC15_MOUSE Spliceosome-associated protein CWC15 homolog OS=Mus musculus
GN=Cwc15 PE=1 SV=1
Length = 229
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 51/59 (86%)
Query: 1 MTTAARPTFEPARGGQGRGEKDLSAISKQYSSRDLPGHTKLKYREHGQGTNEELRSRDF 59
MTTAARPTFEPARGG+G+GE DLS +SKQYSSRDLP HTK+KYR+ Q EE+R+RDF
Sbjct: 1 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVRNRDF 59
>sp|P78794|CWC15_SCHPO Pre-mRNA-splicing factor cwf15 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cwf15 PE=1 SV=2
Length = 265
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
Query: 1 MTTAARPTFEPARGGQGRGEKDLSAISKQYSSRDLPGHTKLKYREHGQGTNEELRSRDFR 60
MTTA RP F+PARG A ++ SSR LP H KLKYR+ QGT EE+R +D R
Sbjct: 1 MTTAHRPQFDPARGHSE------MAPTRITSSRALPAHLKLKYRQESQGTEEEVRKQDLR 54
Query: 61 KEL 63
+ L
Sbjct: 55 EAL 57
>sp|Q5B020|CWC15_EMENI Pre-mRNA-splicing factor cwc15 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=cwc15 PE=3 SV=1
Length = 232
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Query: 1 MTTAARPTFEPARGGQG-RGEKDLSAISKQYSSRDLPGHTKLKYREHGQGTNEELRSRDF 59
MTTA RPTF+PARG + RG Y R LP +T LK R+ GQGT E RD
Sbjct: 1 MTTAHRPTFDPARGKEALRG--------PAYHQRLLPAYTHLKVRQSGQGTEGEAARRDL 52
Query: 60 RKELEERE 67
R EL + E
Sbjct: 53 RAELLQAE 60
>sp|Q6C0E6|CWC15_YARLI Pre-mRNA-splicing factor CWC15 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=CWC15 PE=3 SV=1
Length = 215
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 1 MTTAARPTFEPARGGQGRGEKDLSAISKQYSSRDLPGHTKLKYREHGQGTNEELRSRDFR 60
MTTA RPTF+PARG + + A +R LP HTKLKYR TN + R
Sbjct: 1 MTTAHRPTFDPARG-----KSNTQAAGSISHTRSLPSHTKLKYRYARISTNTDA----MR 51
Query: 61 KELEERE 67
K L E E
Sbjct: 52 KTLLENE 58
>sp|Q6BP48|CWC15_DEBHA Pre-mRNA-splicing factor CWC15 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=CWC15 PE=3 SV=2
Length = 226
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 1 MTTAARPTFEPARGGQGRGEKDLSAISKQYSSRDLPGHTKLKYR 44
MTT RPT E RG + E + I + SR LP HT LKYR
Sbjct: 1 MTTNHRPTLESKRG---KAESISNTI---FHSRSLPQHTSLKYR 38
>sp|Q03772|CWC15_YEAST Pre-mRNA-splicing factor CWC15 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CWC15 PE=1 SV=1
Length = 175
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 1 MTTAARPTFEPARGGQGRGEKDLSAISKQYSSRDLPGHTKLKYREHGQGTN------EEL 54
MTT+ RP E AR G + I +R LPGHT LKYR+ + N +E
Sbjct: 1 MTTSHRPQLE-ARSGAKAAAYTPTGIEH---ARLLPGHTTLKYRKFKEEENLRANCAQED 56
Query: 55 RSRDFRKELEE 65
RS D K LEE
Sbjct: 57 RSND--KSLEE 65
>sp|Q6P4F7|RHGBA_HUMAN Rho GTPase-activating protein 11A OS=Homo sapiens GN=ARHGAP11A PE=1
SV=2
Length = 1023
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 20 EKDLSAISKQYSSRDLPGHTKLKYREHGQGTNEELRSRDFRKE 62
E ++ AISK SS +LP + LK R+H N LRS K+
Sbjct: 910 ESNIGAISK--SSMELPSKSFLKMRKHPDSVNASLRSTTVYKQ 950
>sp|Q6FVL2|CWC15_CANGA Pre-mRNA-splicing factor CWC15 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CWC15 PE=3 SV=1
Length = 143
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 1 MTTAARPTFEPARGGQGRGEKDLSAISKQYSSRDLPGHTKLKYREHGQGTNEELRS 56
MTTA RP E G +G L +++ R LPGHT+LK R+ T ++++
Sbjct: 1 MTTAHRPQLEARNGAKGA----LVPTGTEHA-RLLPGHTELKARKPKNKTTSQIQT 51
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.127 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,879,771
Number of Sequences: 539616
Number of extensions: 1591773
Number of successful extensions: 8919
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 171
Number of HSP's that attempted gapping in prelim test: 7833
Number of HSP's gapped (non-prelim): 1045
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)