Query psy2931
Match_columns 95
No_of_seqs 107 out of 137
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 21:16:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kk8_A Uncharacterized protein 14.1 1.5E+02 0.0051 17.7 2.8 32 37-68 9-45 (84)
2 1fiz_L Beta-acrosin light chai 10.5 84 0.0029 16.5 0.7 11 41-51 12-22 (26)
3 1fiw_L Beta-acrosin light chai 10.1 91 0.0031 16.4 0.7 12 40-51 10-21 (26)
4 3bqo_B TERF1-interacting nucle 9.2 95 0.0033 16.3 0.6 11 6-16 14-24 (26)
5 3ter_A Mammalian stromal inter 8.6 2.2E+02 0.0076 19.9 2.5 22 51-72 3-24 (136)
6 3t5v_C 26S proteasome complex 8.1 2E+02 0.0069 18.9 2.0 14 56-69 74-87 (89)
7 3syn_E ATP-binding protein YLX 7.9 2E+02 0.0067 14.5 1.4 12 57-68 10-21 (23)
8 2wac_A CG7008-PA; unknown func 7.6 2.7E+02 0.0091 18.7 2.5 19 57-75 193-211 (218)
9 1u7k_A GAG polyprotein; capsid 6.9 35 0.0012 24.0 -2.4 7 4-10 47-53 (131)
10 1zrj_A E1B-55KDA-associated pr 6.0 2.1E+02 0.0073 16.5 1.1 15 52-66 11-25 (50)
No 1
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=14.12 E-value=1.5e+02 Score=17.73 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=21.7
Q ss_pred CCceeeeecCCCCC-----hhHhhHHHHHHHHHHHHH
Q psy2931 37 GHTKLKYREHGQGT-----NEELRSRDFRKELEERER 68 (95)
Q Consensus 37 ~HtkLK~Rq~gQ~~-----~~e~~~rDLr~ELe~~E~ 68 (95)
+|+++..+...... ..+....||++.|++.+.
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~g 45 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQH 45 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHT
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHC
Confidence 58888887654322 123468899999988764
No 2
>1fiz_L Beta-acrosin light chain; anti-parallel beta-barrel, hydrolase; HET: NDG FUL BMA PBZ; 2.90A {Sus scrofa} SCOP: b.47.1.2
Probab=10.55 E-value=84 Score=16.52 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=8.4
Q ss_pred eeeecCCCCCh
Q psy2931 41 LKYREHGQGTN 51 (95)
Q Consensus 41 LK~Rq~gQ~~~ 51 (95)
|-|||.+|+..
T Consensus 12 lrfrqn~q~~~ 22 (26)
T 1fiz_L 12 LRFRQKLESGM 22 (26)
T ss_pred ceeccCccccc
Confidence 67899888753
No 3
>1fiw_L Beta-acrosin light chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2
Probab=10.10 E-value=91 Score=16.39 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=8.7
Q ss_pred eeeeecCCCCCh
Q psy2931 40 KLKYREHGQGTN 51 (95)
Q Consensus 40 kLK~Rq~gQ~~~ 51 (95)
-|-|||..|+..
T Consensus 10 Glrfrqn~q~~~ 21 (26)
T 1fiw_L 10 GVRFRQNRQGGV 21 (26)
T ss_pred CceeccCccccc
Confidence 367899888753
No 4
>3bqo_B TERF1-interacting nuclear factor 2; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens}
Probab=9.23 E-value=95 Score=16.31 Aligned_cols=11 Identities=9% Similarity=0.293 Sum_probs=8.6
Q ss_pred CCCCCCCCCCC
Q psy2931 6 RPTFEPARGGQ 16 (95)
Q Consensus 6 RPT~~pA~G~~ 16 (95)
.++|.+++|+.
T Consensus 14 ~s~wasa~~gh 24 (26)
T 3bqo_B 14 QSQWASTRXXX 24 (26)
T ss_pred ccccccccccc
Confidence 47899998864
No 5
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=8.58 E-value=2.2e+02 Score=19.93 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=15.8
Q ss_pred hhHhhHHHHHHHHHHHHHHHHH
Q psy2931 51 NEELRSRDFRKELEEREREKDK 72 (95)
Q Consensus 51 ~~e~~~rDLr~ELe~~E~~~~~ 72 (95)
.+......||.+|.+||+.-..
T Consensus 3 ~~~~Ele~lr~aL~~AE~eLe~ 24 (136)
T 3ter_A 3 VNHTEMENLRVQLEEAERRLEA 24 (136)
T ss_dssp CCHHHHHHHHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHHHHHHHHh
Confidence 3444577899999999987544
No 6
>3t5v_C 26S proteasome complex subunit SEM1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=8.14 E-value=2e+02 Score=18.89 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHH
Q psy2931 56 SRDFRKELEERERE 69 (95)
Q Consensus 56 ~rDLr~ELe~~E~~ 69 (95)
..-||+||+..+.+
T Consensus 74 S~QLr~EL~k~~~~ 87 (89)
T 3t5v_C 74 TNELKAELDRYKRE 87 (89)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhc
Confidence 66799999887764
No 7
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=7.85 E-value=2e+02 Score=14.52 Aligned_cols=12 Identities=42% Similarity=0.764 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHH
Q psy2931 57 RDFRKELEERER 68 (95)
Q Consensus 57 rDLr~ELe~~E~ 68 (95)
-.||+..|.+|+
T Consensus 10 atlrakmekrer 21 (23)
T 3syn_E 10 ATLRAKMEKRER 21 (26)
T ss_pred HHHHHHHHHHhh
Confidence 358888888775
No 8
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=7.62 E-value=2.7e+02 Score=18.74 Aligned_cols=19 Identities=0% Similarity=0.099 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy2931 57 RDFRKELEEREREKDKTAR 75 (95)
Q Consensus 57 rDLr~ELe~~E~~~~~kkr 75 (95)
.++..+|+++|..|+..++
T Consensus 193 ~~~~~~~~~~e~~Ar~~r~ 211 (218)
T 2wac_A 193 KELVDQYKAAQEAARVAHL 211 (218)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 4566889999999888775
No 9
>1u7k_A GAG polyprotein; capsid, viral protein; 1.85A {Endogenous} SCOP: a.73.1.1 PDB: 2y4z_A 3bp9_A
Probab=6.88 E-value=35 Score=24.02 Aligned_cols=7 Identities=29% Similarity=0.843 Sum_probs=3.4
Q ss_pred CCCCCCC
Q psy2931 4 AARPTFE 10 (95)
Q Consensus 4 AHRPT~~ 10 (95)
.|.|||+
T Consensus 47 th~pTW~ 53 (131)
T 1u7k_A 47 THQPTWD 53 (131)
T ss_dssp HTCCCHH
T ss_pred hcCCCHH
Confidence 3555554
No 10
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=6.05 E-value=2.1e+02 Score=16.48 Aligned_cols=15 Identities=33% Similarity=0.707 Sum_probs=10.6
Q ss_pred hHhhHHHHHHHHHHH
Q psy2931 52 EELRSRDFRKELEER 66 (95)
Q Consensus 52 ~e~~~rDLr~ELe~~ 66 (95)
..+.+.|||++|..+
T Consensus 11 ~klkV~eLK~eLk~R 25 (50)
T 1zrj_A 11 RRLKVNELREELQRR 25 (50)
T ss_dssp GGSCHHHHHHHHHHT
T ss_pred HHCcHHHHHHHHHHc
Confidence 345678899988643
Done!