Query psy2931
Match_columns 95
No_of_seqs 107 out of 137
Neff 3.8
Searched_HMMs 13730
Date Fri Aug 16 21:16:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2931.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2931hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gmha3 d.58.1.6 (A:483-584) E 15.3 30 0.0022 21.4 1.4 17 26-42 9-25 (102)
2 d2g38a1 a.25.4.1 (A:8-84) PE25 10.1 23 0.0017 21.0 -0.4 7 1-7 28-34 (77)
3 d1x3pa1 b.34.13.2 (A:1-54) CpS 8.9 49 0.0036 18.2 0.8 8 7-14 30-37 (54)
4 d1zrja1 a.140.2.1 (A:1-37) Het 7.8 74 0.0054 16.2 1.1 15 52-66 4-18 (37)
5 d1exea_ a.55.1.1 (A:) Transcri 5.7 2.8E+02 0.02 15.7 4.8 29 34-72 70-98 (99)
6 d1knga_ c.47.1.10 (A:) Thiored 5.2 2.6E+02 0.019 15.8 2.9 37 28-65 100-142 (144)
7 d1b8za_ a.55.1.1 (A:) HU prote 5.0 90 0.0066 17.7 0.5 12 35-46 71-82 (90)
8 d1yuja_ g.37.1.1 (A:) GAGA fac 4.9 81 0.0059 17.5 0.2 15 55-72 36-50 (54)
9 d1oeya_ d.15.2.2 (A:) Neutroph 4.6 1.3E+02 0.0091 17.9 1.0 13 34-46 39-51 (82)
10 d2g39a2 c.124.1.2 (A:224-497) 4.0 2E+02 0.014 20.0 1.8 21 58-79 232-252 (274)
No 1
>d2gmha3 d.58.1.6 (A:483-584) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}
Probab=15.27 E-value=30 Score=21.45 Aligned_cols=17 Identities=35% Similarity=0.517 Sum_probs=14.6
Q ss_pred ccccccccCCCCCceee
Q psy2931 26 ISKQYSSRDLPGHTKLK 42 (95)
Q Consensus 26 ~s~~~ssRdLP~HtkLK 42 (95)
.|...|--|.|.|.+||
T Consensus 9 ~sgt~HeEdQP~HL~ik 25 (102)
T d2gmha3 9 LSGTNHEHDQPAHLTLK 25 (102)
T ss_dssp TTTCBCCSSSCCSEEES
T ss_pred ecCCCCCCCCCceEEec
Confidence 46678999999999996
No 2
>d2g38a1 a.25.4.1 (A:8-84) PE25 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.13 E-value=23 Score=21.04 Aligned_cols=7 Identities=86% Similarity=1.146 Sum_probs=5.1
Q ss_pred CCCCCCC
Q psy2931 1 MTTAARP 7 (95)
Q Consensus 1 MTTAHRP 7 (95)
||||-||
T Consensus 28 mttavrp 34 (77)
T d2g38a1 28 MTTAVRP 34 (77)
T ss_dssp HHTCCCC
T ss_pred cccccCC
Confidence 6777776
No 3
>d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=8.85 E-value=49 Score=18.16 Aligned_cols=8 Identities=38% Similarity=0.729 Sum_probs=6.7
Q ss_pred CCCCCCCC
Q psy2931 7 PTFEPARG 14 (95)
Q Consensus 7 PT~~pA~G 14 (95)
+||+|+..
T Consensus 30 ~TWEP~~n 37 (54)
T d1x3pa1 30 ATWEPQDN 37 (54)
T ss_dssp CSCSTTCC
T ss_pred CCccchHH
Confidence 79999865
No 4
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.80 E-value=74 Score=16.17 Aligned_cols=15 Identities=33% Similarity=0.707 Sum_probs=10.5
Q ss_pred hHhhHHHHHHHHHHH
Q psy2931 52 EELRSRDFRKELEER 66 (95)
Q Consensus 52 ~e~~~rDLr~ELe~~ 66 (95)
+.+.+.+||++|.++
T Consensus 4 ~~m~V~eLK~~Lk~r 18 (37)
T d1zrja1 4 RRLKVNELREELQRR 18 (37)
T ss_dssp GGSCHHHHHHHHHHT
T ss_pred HHCcHHHHHHHHHHC
Confidence 345678899988643
No 5
>d1exea_ a.55.1.1 (A:) Transcription factor 1, TF1 {Bacteriophage SPO1 [TaxId: 10685]}
Probab=5.65 E-value=2.8e+02 Score=15.74 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=21.4
Q ss_pred CCCCCceeeeecCCCCChhHhhHHHHHHHHHHHHHHHHH
Q psy2931 34 DLPGHTKLKYREHGQGTNEELRSRDFRKELEEREREKDK 72 (95)
Q Consensus 34 dLP~HtkLK~Rq~gQ~~~~e~~~rDLr~ELe~~E~~~~~ 72 (95)
.+|++..++||-. +.|+..|.....+.++
T Consensus 70 ~ip~~~~v~Fk~s----------k~LK~~vn~~~~~~~a 98 (99)
T d1exea_ 70 EIAPSVGVSVKPG----------ESLKKAAEGLKYEDFA 98 (99)
T ss_dssp CCCCCCCCCCCCC----------HHHHHHHHHHTHHHHH
T ss_pred EecCcccEEEecC----------HHHHHHHcCCchhhhc
Confidence 4799999999865 4588888766665554
No 6
>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}
Probab=5.18 E-value=2.6e+02 Score=15.84 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=20.5
Q ss_pred ccccccCCC------CCceeeeecCCCCChhHhhHHHHHHHHHH
Q psy2931 28 KQYSSRDLP------GHTKLKYREHGQGTNEELRSRDFRKELEE 65 (95)
Q Consensus 28 ~~~ssRdLP------~HtkLK~Rq~gQ~~~~e~~~rDLr~ELe~ 65 (95)
..|....+| ..-+|-++..|..+.+++ ...|+.+|++
T Consensus 100 ~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~l-~~~i~~~l~k 142 (144)
T d1knga_ 100 IEWGVYGVPETFVVGREGTIVYKLVGPITPDNL-RSVLLPQMEK 142 (144)
T ss_dssp HHTTCCSSCEEEEECTTSBEEEEEESCCCHHHH-HHTHHHHHHH
T ss_pred hhcCccccceEEEEcCCCeEEEEEeCCCCHHHH-HHHHHHHHHH
Confidence 344445566 455778888877665542 2234555544
No 7
>d1b8za_ a.55.1.1 (A:) HU protein {Thermotoga maritima [TaxId: 2336]}
Probab=5.04 E-value=90 Score=17.70 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=5.6
Q ss_pred CCCCceeeeecC
Q psy2931 35 LPGHTKLKYREH 46 (95)
Q Consensus 35 LP~HtkLK~Rq~ 46 (95)
+|++..++||-.
T Consensus 71 ip~k~~v~Fk~s 82 (90)
T d1b8za_ 71 IPERKVPKFKPG 82 (90)
T ss_dssp -----CCEEEEC
T ss_pred ecCcceEEEeeC
Confidence 688999999854
No 8
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}
Probab=4.92 E-value=81 Score=17.52 Aligned_cols=15 Identities=33% Similarity=0.487 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy2931 55 RSRDFRKELEEREREKDK 72 (95)
Q Consensus 55 ~~rDLr~ELe~~E~~~~~ 72 (95)
..|.||+.|| -.||+
T Consensus 36 qsrnlrrhle---l~hf~ 50 (54)
T d1yuja_ 36 QSRNLRRHLE---LRHFA 50 (54)
T ss_dssp SHHHHHHHHH---HHTSC
T ss_pred HHHHHHHHHH---HHhhc
Confidence 4788999995 44554
No 9
>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.59 E-value=1.3e+02 Score=17.91 Aligned_cols=13 Identities=46% Similarity=0.491 Sum_probs=10.6
Q ss_pred CCCCCceeeeecC
Q psy2931 34 DLPGHTKLKYREH 46 (95)
Q Consensus 34 dLP~HtkLK~Rq~ 46 (95)
.+|.|++|-||..
T Consensus 39 l~~~~~~LSY~~~ 51 (82)
T d1oeya_ 39 LRLEHTKLSYRPR 51 (82)
T ss_dssp CCGGGCCEEECCT
T ss_pred CChhheEEEeccC
Confidence 4689999999844
No 10
>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.98 E-value=2e+02 Score=19.97 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC
Q psy2931 58 DFRKELEEREREKDKTARIRAP 79 (95)
Q Consensus 58 DLr~ELe~~E~~~~~kkr~~~~ 79 (95)
|||.+|++ |.+.-.++..+.|
T Consensus 232 ~fR~~L~~-~a~~a~~~~~~~p 252 (274)
T d2g39a2 232 SYQAPLLD-YFEAACAKGGHTP 252 (274)
T ss_dssp TTHHHHHH-HHHHHHHTCCSSC
T ss_pred chHHHHHH-HHHHHHHhcCCCh
Confidence 57888875 3333333444444
Done!