RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2931
         (95 letters)



>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
          This family represents Cwf15/Cwc15 (from
          Schizosaccharomyces pombe and Saccharomyces cerevisiae
          respectively) and their homologues. The function of
          these proteins is unknown, but they form part of the
          spliceosome and are thus thought to be involved in mRNA
          splicing.
          Length = 241

 Score = 91.3 bits (227), Expect = 3e-24
 Identities = 46/69 (66%), Positives = 51/69 (73%)

Query: 1  MTTAARPTFEPARGGQGRGEKDLSAISKQYSSRDLPGHTKLKYREHGQGTNEELRSRDFR 60
          MTTA RPTF+PARG + +G   LS  S  YSSRDLP HTKLKYR+ GQGT +ELR RD R
Sbjct: 1  MTTAHRPTFDPARGKEEQGGNRLSGPSSIYSSRDLPAHTKLKYRQPGQGTEDELRKRDLR 60

Query: 61 KELEERERE 69
           ELEE ER 
Sbjct: 61 AELEEAERA 69


>gnl|CDD|146463 pfam03842, Silic_transp, Silicon transporter. 
          Length = 513

 Score = 31.0 bits (70), Expect = 0.061
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 32  SRDLPGHTKLKYREHGQGTNEE---LRSRDFRKELEEREREKDKTARIRAPESHANRKQK 88
           ++D          EH  GTN E    +S+D   E    + E  K      PE+ A  +Q 
Sbjct: 441 AQDKADAQMPSGAEHLMGTNFESLVGQSQDVLDEKAGSDEEGAKFEEAPVPETKALLEQN 500

Query: 89  KGK 91
           + +
Sbjct: 501 QSQ 503


>gnl|CDD|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family.  The
           proteins of the Trk family are derived from
           Gram-negative and Gram-positive bacteria, yeast and
           wheat. The proteins of E. coli K12 TrkH and TrkG as well
           as several yeast proteins have been functionally
           characterized.The E. coli TrkH and TrkG proteins are
           complexed to two peripheral membrane proteins, TrkA, an
           NAD-binding protein, and TrkE, an ATP-binding protein.
           This complex forms the potassium uptake system. This
           family is specific for the eukaryotic Trk system
           [Transport and binding proteins, Cations and iron
           carrying compounds].
          Length = 800

 Score = 27.6 bits (61), Expect = 1.1
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 21  KDLSAISKQYSSRDLPGHTKLKYREHGQG----TNEELRSRDFRKELEEREREKDKTARI 76
           +  + + ++   R   G        HG        ++L S +F K  E  +   D  +  
Sbjct: 149 RTKTLLQRELEDRPETGVAGRVTVPHGSAKRRDFQDKLFSGEFVKRDEPDQNSPDVKSDT 208

Query: 77  RAPESHANRKQKKGKKKRG 95
           RA ES ++ + +K  K+RG
Sbjct: 209 RADESISDLEFEKFAKRRG 227


>gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate
           dehydrogenase; Provisional.
          Length = 296

 Score = 26.7 bits (59), Expect = 1.5
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 1   MTTAARPTFEPARGGQGRGEKDLSAISKQ 29
           +  A+R  +  AR   GRG +D SAI +Q
Sbjct: 258 LGAASREVYSQARA-AGRGRQDWSAILEQ 285


>gnl|CDD|220191 pfam09344, Cas_CT1975, CT1975-like protein.  CRISPR is a term for
           Clustered, Regularly Interspaced Short Palidromic
           Repeats. A number of protein families appear only in
           association with these repeats and are designated Cas
           (CRISPR-Associated) proteins. This family is represented
           by CT1975 of Chlorobium tepidum.
          Length = 353

 Score = 26.5 bits (59), Expect = 1.9
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 31  SSRDLPGHTKLKYREHGQGTNEELRSRDFRKELEER-----EREKDKTARIRAPESHANR 85
           SS+ L    +           E +R++   +E+ +R       E+   A          +
Sbjct: 36  SSQSLKRAIRTSEEFAQLLAEEGVRTKRLAEEVAKRLEQAGVEEELAKALAEKILGAFGK 95

Query: 86  KQKKGKKKRG 95
           K KKGKK + 
Sbjct: 96  KLKKGKKSKK 105


>gnl|CDD|214361 CHL00095, clpC, Clp protease ATP binding subunit.
          Length = 821

 Score = 26.6 bits (59), Expect = 2.2
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 24  SAISKQY--SSRDLPGHTKLK--YREHGQGTNEELRSRDFRKELEEREREKDKTARIRA 78
            A S+    +SR  P   +L    RE  +  +E +R +DF    + R+RE +  A+I A
Sbjct: 396 EAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAA 454


>gnl|CDD|179625 PRK03659, PRK03659, glutathione-regulated potassium-efflux system
           protein KefB; Provisional.
          Length = 601

 Score = 26.5 bits (59), Expect = 2.3
 Identities = 9/31 (29%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 45  EHGQGTNEELRSRDFRKELEE---REREKDK 72
           +H     +  R+++ R+ELEE   RE ++++
Sbjct: 562 QHNGDVVQISRAKEARRELEEIFQREMQQER 592


>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular
          trafficking and secretion].
          Length = 526

 Score = 26.0 bits (57), Expect = 4.0
 Identities = 10/42 (23%), Positives = 27/42 (64%)

Query: 31 SSRDLPGHTKLKYREHGQGTNEELRSRDFRKELEEREREKDK 72
          +SR +P   +  ++  G+ + +ELR R   +++E R++++++
Sbjct: 2  TSRFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREE 43


>gnl|CDD|222162 pfam13478, XdhC_C, XdhC Rossmann domain.  This entry is the
           rossmann domain found in the Xanthine dehydrogenase
           accessory protein.
          Length = 137

 Score = 25.1 bits (56), Expect = 5.1
 Identities = 5/25 (20%), Positives = 11/25 (44%)

Query: 55  RSRDFRKELEEREREKDKTARIRAP 79
           +     + L      +++ AR+ AP
Sbjct: 92  KRARRLERLRAEGVSEEQLARLHAP 116


>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
           component YidC; Validated.
          Length = 429

 Score = 25.6 bits (56), Expect = 5.3
 Identities = 8/44 (18%), Positives = 19/44 (43%)

Query: 52  EELRSRDFRKELEEREREKDKTARIRAPESHANRKQKKGKKKRG 95
            + R ++  ++    ERE ++ AR     + A  + ++   K  
Sbjct: 343 AKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAK 386


>gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/
            magnesium ion binding  / thiamin pyrophosphate binding.
          Length = 1655

 Score = 25.6 bits (56), Expect = 5.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 32   SRDLPGHTKLKYREHGQGTNEE 53
            S DLPGH   K + H + T  E
Sbjct: 1402 SIDLPGHGGSKIQNHAKETQTE 1423


>gnl|CDD|198067 smart00999, Aerolysin, Aerolysin toxin.  This family represents the
           pore forming lobe of aerolysin.
          Length = 368

 Score = 25.2 bits (55), Expect = 5.9
 Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 6/50 (12%)

Query: 6   RPTFEPARGGQGRGEKDLSAISKQYSSRDLPGHTKL-----KYREHGQGT 50
           RP +     G G        I  Q+  R +PG  K        +E+G   
Sbjct: 240 RPNW-NHTFGMGNASNLAEDIRYQWDHRYIPGEGKWWDWNWAIQENGLSG 288


>gnl|CDD|235444 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.
          Length = 854

 Score = 25.1 bits (56), Expect = 7.8
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 5/23 (21%)

Query: 53  ELR-----SRDFRKELEEREREK 70
           ELR      +D+  ELE RERE+
Sbjct: 434 ELRALSDNGKDWLAELEARERER 456


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.308    0.127    0.350 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,766,568
Number of extensions: 396436
Number of successful extensions: 535
Number of sequences better than 10.0: 1
Number of HSP's gapped: 523
Number of HSP's successfully gapped: 90
Length of query: 95
Length of database: 10,937,602
Length adjustment: 62
Effective length of query: 33
Effective length of database: 8,187,654
Effective search space: 270192582
Effective search space used: 270192582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.3 bits)