RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2931
         (95 letters)



>d3c0na2 f.8.1.1 (A:85-468) (Pro)aerolysin, pore-forming lobe
           {Aeromonas hydrophila [TaxId: 644]}
          Length = 384

 Score = 26.7 bits (59), Expect = 0.46
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 6   RPTFEPARGGQGRGEKDLSAISKQYSSRDLPGHTK 40
           RP +       G  +   S+I  Q+  R +PG  K
Sbjct: 252 RPNWN-HTFVIGPYKDKASSIRYQWDKRYIPGEVK 285


>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 134

 Score = 25.8 bits (56), Expect = 0.68
 Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 1   MTTAARPTFEPARGGQGRGEKDLSAISKQY 30
           M + A   +      QG  E+D S + K +
Sbjct: 102 MGSLALSLYRLLLK-QGYAERDFSVVQKLF 130


>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 133

 Score = 25.0 bits (54), Expect = 1.2
 Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 1   MTTAARPTFEPARGGQGRGEKDLSAISKQY 30
           +T A     +  R   G G  D SA++  Y
Sbjct: 95  LTAAVMEMMQALRA-DGHGNDDHSALACYY 123


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.127    0.350 

Gapped
Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 325,395
Number of extensions: 13143
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 6
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.4 bits)