RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2936
(174 letters)
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine,
nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A*
3rf5_A*
Length = 119
Score = 140 bits (354), Expect = 7e-44
Identities = 41/117 (35%), Positives = 67/117 (57%)
Query: 1 MPVFRIETNIPKEKIPANFGKETGALVAKTLGKPENYVAVIVVPDVNLVFGGSDAPAAIA 60
MP+ R+ TN+P + +PANF + L+A+++ KP N +A+ V+ + G S P A+
Sbjct: 1 MPMVRVATNLPDKDVPANFEERLTDLLAESMNKPRNRIAIEVLAGQRITHGASRNPVAVI 60
Query: 61 SLMSIGKLGTAENKKHSAVLFPHIEKTLGIPKDRMYISYIDSSTDVVGYNGTTFHEI 117
+ SIG L +N +H+ + + TL +PKD++ I+Y D VG+NGTT
Sbjct: 61 KVESIGALSADDNIRHTQKITQFCQDTLKLPKDKVIITYFDLQPIHVGFNGTTVAAA 117
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase;
2.50A {Xenopus laevis} SCOP: d.80.1.3
Length = 115
Score = 135 bits (342), Expect = 5e-42
Identities = 48/114 (42%), Positives = 71/114 (62%)
Query: 1 MPVFRIETNIPKEKIPANFGKETGALVAKTLGKPENYVAVIVVPDVNLVFGGSDAPAAIA 60
MPVF I TN+ ++ +P + +AK GKP Y+A+ +VPD + FG S P A+
Sbjct: 1 MPVFTIRTNVCRDSVPDTLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTDPCAVC 60
Query: 61 SLMSIGKLGTAENKKHSAVLFPHIEKTLGIPKDRMYISYIDSSTDVVGYNGTTF 114
SL SIGK+G +NK ++ +L + K L IP +R+YI+Y D + VG+NG+TF
Sbjct: 61 SLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINYYDLNAANVGWNGSTF 114
>3kan_A D-dopachrome tautomerase; immune response, cytokine,
cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens}
PDB: 1dpt_A* 3ker_A*
Length = 117
Score = 134 bits (338), Expect = 2e-41
Identities = 42/117 (35%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 2 PVFRIETNIPKEKIPANFGKETGALVAKTLGKPENYVAVIVVPDVNLVFGGSDAPAAIAS 61
P ++TN+P ++PA K A A LGKP + V V V P + + GS P A S
Sbjct: 1 PFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLS 60
Query: 62 LMSIGKLGTAE-NKKHSAVLFPHIEKTLGIPKDRMYISYIDSSTDVVGYNGTTFHEI 117
+ SIG +GTAE N+ HSA F + K L + +DR+ I + + +G GT +
Sbjct: 61 ISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL 117
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase,
immune system, cyanobacterium; 1.64A {Prochlorococcus
marinus}
Length = 115
Score = 134 bits (338), Expect = 2e-41
Identities = 39/114 (34%), Positives = 63/114 (55%)
Query: 1 MPVFRIETNIPKEKIPANFGKETGALVAKTLGKPENYVAVIVVPDVNLVFGGSDAPAAIA 60
MP+ I+ ++P + +E + +A+ LGKPE YV + V + F G+ P
Sbjct: 1 MPLINIQASVPAVADANSLLQELSSKLAELLGKPEKYVMTSLQCGVPMTFSGNTEPTCYV 60
Query: 61 SLMSIGKLGTAENKKHSAVLFPHIEKTLGIPKDRMYISYIDSSTDVVGYNGTTF 114
+ SIG L + ++ S ++ HIE+ LGIP DR+YI + D + G+NG+TF
Sbjct: 61 EVKSIGALDGSRTQEVSELVCGHIEQNLGIPADRIYIGFEDVPARLWGWNGSTF 114
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine,
inflammatory response, isomerase, phosphoprotein; 1.25A
{Homo sapiens} PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A*
3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 1gd0_A*
1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* 3l5r_A* 3l5s_A*
3l5t_A* 3l5u_A* ...
Length = 114
Score = 133 bits (336), Expect = 4e-41
Identities = 49/113 (43%), Positives = 71/113 (62%)
Query: 2 PVFRIETNIPKEKIPANFGKETGALVAKTLGKPENYVAVIVVPDVNLVFGGSDAPAAIAS 61
P+F + TN+P+ +P F E +A+ GKP Y+AV VVPD + FGGS P A+ S
Sbjct: 1 PMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCS 60
Query: 62 LMSIGKLGTAENKKHSAVLFPHIEKTLGIPKDRMYISYIDSSTDVVGYNGTTF 114
L SIGK+G A+N+ +S +L + + L I DR+YI+Y D + VG+N +TF
Sbjct: 61 LHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 113
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella
spiralis} SCOP: d.80.1.3
Length = 113
Score = 131 bits (330), Expect = 3e-40
Identities = 56/113 (49%), Positives = 74/113 (65%)
Query: 2 PVFRIETNIPKEKIPANFGKETGALVAKTLGKPENYVAVIVVPDVNLVFGGSDAPAAIAS 61
P+F + TNI +P++F T ALV L KP +YVAV + D L FGGS PAA +
Sbjct: 1 PIFTLNTNIKATDVPSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTNPAAFGT 60
Query: 62 LMSIGKLGTAENKKHSAVLFPHIEKTLGIPKDRMYISYIDSSTDVVGYNGTTF 114
LMSIG + + N+ HSA LF H+ LGIPK+RMYI +++ + D VG+NGTTF
Sbjct: 61 LMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHFVNLNGDDVGWNGTTF 113
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A
{Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Length = 125
Score = 131 bits (331), Expect = 3e-40
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
Query: 2 PVFRIETNIP-KEKIPANFGKETGALVAKTLGKPENYVAVIVVPDVNLVFGGSDAPAAIA 60
P + TNI + N E ++ LGKP Y+ NL F GS+
Sbjct: 1 PCCELITNISIPDDKAQNTLSEIEDAISNILGKPVAYIMSNYDYQKNLRFSGSNEGYCFV 60
Query: 61 SLMSIGKLGTAENKKHSAVLFPHIEKTLGIPKDRMYISYIDSSTDVVGYNGTTF 114
L SIG + + N + + + L + R+YI + D S ++G+ F
Sbjct: 61 RLTSIGGINRSNNSLLADKITKILSNHLSVKPRRVYIEFRDCSAQNFAFSGSLF 114
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer,
tautomerase, cytokine; 1.80A {Leishmania major}
Length = 133
Score = 131 bits (331), Expect = 3e-40
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 1 MPVFRIETNIPKEKIPAN-FGKETGALVAKTLGKPENYVAVIVVPDVNLVFGGSDAPAAI 59
MPV + + P + + A+ LGKPE+ V + + F GS P A
Sbjct: 21 MPVIQTFVSTPLDHHKRENLAQVYRAVTRDVLGKPEDLVMMTFHDSTPMHFFGSTDPVAC 80
Query: 60 ASLMSIGKLGTAENKKHSAVLFPHIEKTLGIPKDRMYISYIDSSTDVVGYNGTTF 114
+ ++G G +E +K ++++ I K GI DR+++ Y G+NGT F
Sbjct: 81 VRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVLYFSPLH--CGWNGTNF 133
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF,
LM1740MIF, lmmif, unknown function; 1.03A {Leishmania
major}
Length = 112
Score = 130 bits (328), Expect = 5e-40
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 2 PVFRIETNIPKEKIPAN-FGKETGALVAKTLGKPENYVAVIVVPDVNLVFGGSDAPAAIA 60
PV + + P + + A+ LGKPE+ V + + F GS P A
Sbjct: 1 PVIQTFVSTPLDHHKRENLAQVYRAVTRDVLGKPEDLVMMTFHDSTPMHFFGSTDPVACV 60
Query: 61 SLMSIGKLGTAENKKHSAVLFPHIEKTLGIPKDRMYISYIDSSTDVVGYNGTTF 114
+ ++G G +E +K ++++ I K GI DR+++ Y G+NGT F
Sbjct: 61 RVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVLYFSPLH--CGWNGTNF 112
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer,
tautomerase, cytokine; 1.90A {Leishmania major}
Length = 133
Score = 130 bits (329), Expect = 8e-40
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 1 MPVFRIETNIPKEKIPAN-FGKETGALVAKTLGKPENYVAVIVVPDVNLVFGGSDAPAAI 59
MP + ++ + G + + LGKPE++V + F GS APAA
Sbjct: 21 MPFLQTIVSVSLDDQKRANLSAAYGMICREELGKPEDFVMTAFSDKTPISFQGSTAPAAY 80
Query: 60 ASLMSIGKLGTAENKKHSAVLFPHIEKTLGIPKDRMYISYIDSSTDVVGYNGTTF 114
+ S G+ ++ K + + I K GIP +R+Y+ Y + G+NGT F
Sbjct: 81 VRVESWGEYAPSKPKMMTPRIAAAITKECGIPAERIYVFYYSTKH--CGWNGTNF 133
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; 2.30A {Giardia lamblia}
Length = 135
Score = 128 bits (324), Expect = 5e-39
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 1 MPVFRIETNIPKEKIPAN-FGKETGALVAKTLGKPENYVAVIVVPDVNLVFGGSDAPAAI 59
MP + TN K A+ F + G ++AK GKP +Y V ++ FG S
Sbjct: 22 MPCAIVTTNADFTKDQADAFCLDMGQVLAKETGKPVSYCMA-GVRKADMSFGTSTDLCCF 80
Query: 60 ASLMSIGKLGTAENKKHSAVLFPHIEKTLGIPKDRMYISYIDSSTDVVGYNGTTF 114
IG + A+N SA + + + + +R+YIS+ ++ G+NG+TF
Sbjct: 81 VDFYCIGVISQAKNPSISAAITGCLTQHFKVKPERVYISFNEAKGHNWGFNGSTF 135
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 5e-04
Identities = 47/244 (19%), Positives = 65/244 (26%), Gaps = 95/244 (38%)
Query: 6 IETNIPKEKIPANFGKETGALVAKTLGKPENYVAVIVVPDVNLVFGGSDAPAAIASLMS- 64
+E + +P +A L E + ++ P F D P A L+
Sbjct: 16 LEHVLL---VPTAS-----FFIASQL--QEQFNKILPEPTEG--FAADDEPTTPAELVGK 63
Query: 65 -IG------------------KLGTAE--------NKKHSAV--LFPHIEKTLGIPKDRM 95
+G L E N H+ L + TL K +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL--VKTKE 121
Query: 96 YI-SYIDSST---------------DVVGYNGTTFHEIFGG------------------P 121
I +YI + VG IFGG
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 122 VLNKRAMESIVLEFKNVLIKNQSTTTVAFSCGL-----LGKPS-----DYLN--PYVVRI 169
VL ++ LI+ F+ GL L PS DYL P I
Sbjct: 182 VLVGDLIKFSAETLSE-LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP----I 236
Query: 170 SLPL 173
S PL
Sbjct: 237 SCPL 240
Score = 32.3 bits (73), Expect = 0.076
Identities = 18/132 (13%), Positives = 43/132 (32%), Gaps = 38/132 (28%)
Query: 42 VVPDVNLVFGG------SDAPAAIASLMSI----------GKLGTAENKKHS-------- 77
++P + F G + A A++A +MSI G +
Sbjct: 1752 LIPA-DATFAGHSLGEYA-ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 78 -AVLFPHIEKTLGIPKDRMYISYIDSSTD----VVGYN--GTTFHEIFGGPVLNKRAMES 130
A+ + + + + + T +V YN + + G + RA+++
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY--VAAG---DLRALDT 1864
Query: 131 IVLEFKNVLIKN 142
+ + ++
Sbjct: 1865 VTNVLNFIKLQK 1876
Score = 28.9 bits (64), Expect = 1.1
Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 33/95 (34%)
Query: 83 HIEKTLGIPKDRMYISYIDSSTDVVGYNGTTFHEIFGGPVL-----NKRAM-------ES 130
H + T G S D+V N FGG N AM
Sbjct: 1652 HFKDTYGF-----------SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 131 IVLE--FKNVLIKNQSTTTVAFSCGLLGKPSDYLN 163
+ E FK + N+ +T+ F L+
Sbjct: 1701 LKTEKIFKEI---NEHSTSYTFRS-----EKGLLS 1727
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.017
Identities = 35/197 (17%), Positives = 52/197 (26%), Gaps = 70/197 (35%)
Query: 3 VFRIETNIPKEKIPANFGKETGALVAKTLG-----KPENYVAVIVVPDVN--LVFGGSDA 55
VF +IP L ++ V V+V LV
Sbjct: 380 VFPPSAHIP----------------TILLSLIWFDVIKSDVMVVVNKLHKYSLVEK--QP 421
Query: 56 PAAIASLMSI--GKLGTAENKK--HSAVL--------FPHIEKTLGIPKDRMYI-SYIDS 102
+ S+ SI EN+ H +++ F L P Y S+I
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS--DDLIPPYLDQYFYSHI-- 477
Query: 103 STDVVGYNGTTFHEIFGGPVLNKRAMESIVLEFKNVL---------IKNQSTTTVAFSCG 153
G+ H L + F+ V I++ ST A
Sbjct: 478 -----GH-----H-------LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG-S 519
Query: 154 LLGKPSDYLNPYVVRIS 170
+L L Y I
Sbjct: 520 ILNTLQQ-LKFYKPYIC 535
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus
thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A
2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Length = 439
Score = 28.3 bits (63), Expect = 1.3
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 103 STDVVGYNGTTFHEIFGGPVLNKRAMESIVLEFKNVLIKNQSTTT 147
++ Y G+ F GP L R +++ L +N L + T
Sbjct: 34 RATLLTYGGS-----FPGPTLRVRPRDTVRLTLENRL--PEPTNL 71
>3sks_A Putative oligoendopeptidase F; structural genomics, center for
structural genomics of infec diseases, csgid, protease,
hydrolase; 2.05A {Bacillus anthracis}
Length = 567
Score = 27.8 bits (62), Expect = 1.9
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 80 LFPHIEKTLGIPKDRMYISYIDSSTDVVGYNGTTF----HEIFGGPVL 123
+P ++ D+ Y S++ S+ + G + H ++ P
Sbjct: 397 TWPWMKLFFEEDADKYYFSHLSSALLFL-PYGVSVDEYQHYVYENPEA 443
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB:
3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Length = 564
Score = 27.8 bits (62), Expect = 2.3
Identities = 3/37 (8%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 80 LFPHIEKTLGIPKDRMYISYIDSSTDVVGYNGTTFHE 116
+P ++ ++ ++ + + G E
Sbjct: 394 TWPWMKLFFKEDAEKYQFYHLSDALLFL-PYGVAVDE 429
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like,
FTS mutant suppressor; 1.90A {Escherichia coli} PDB:
2uxv_A
Length = 451
Score = 27.6 bits (61), Expect = 2.3
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 103 STDVVGYNGTTFHEIFGGPVLNKRAMESIVLEFKNVLIKNQSTT 146
V G NG + GP + + + L + N L +N S T
Sbjct: 37 RASVWGINGR-----YLGPTIRVWKGDDVKLIYSNRLTENVSMT 75
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco
metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A
{Myrothecium verrucaria} PDB: 2xll_A*
Length = 534
Score = 27.6 bits (61), Expect = 2.3
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 103 STDVVGYNGTTFHEIFGGPVLNKRAMESIVLEFKNVL 139
S D+VGY+G GP V+ F N
Sbjct: 56 SADLVGYDGM-----SPGPTFQVPRGVETVVRFINNA 87
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 27.1 bits (61), Expect = 3.0
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 43 VPD--VNLVFGGSDAPAAIASLMSIGKL 68
VP VN+V GG++ + + ++ K+
Sbjct: 210 VPVGLVNVVQGGAETGSLLCHHPNVAKV 237
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL;
1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A*
1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A*
2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B*
3b9j_A* 1fiq_A*
Length = 1332
Score = 27.1 bits (60), Expect = 3.4
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 22 ETGALVAKTLGKPENYVAVIVVPDVNLVFGG----SDAPAAIASL 62
+T + VAK LG P N + V V + FGG S + +L
Sbjct: 771 KTQSFVAKMLGVPVNRILVR-VKRMGGGFGGKETRSTLVSVAVAL 814
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous
oxidase; 1.95A {Campylobacter jejuni subsp}
Length = 481
Score = 26.8 bits (59), Expect = 4.0
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 7/47 (14%)
Query: 101 DSSTDVVGYNGTTFHEIFGGPVLNKRAMESIVLEFKNVLIKNQSTTT 147
T YNG P + + + + KN L ++TT
Sbjct: 67 GKKTLFYTYNGL-----VPAPKIEVFEGDKLEILVKNKL--KEATTI 106
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase,
oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A
2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A
3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A
3uac_A 3uab_A 3uae_A 3nsy_A ...
Length = 488
Score = 26.8 bits (59), Expect = 4.5
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 103 STDVVGYNGTTFHEIFGGPVLNKRAMESIVLEFKNVLIKNQSTTT 147
+ GYNG GP + + +++ ++ N L + TT
Sbjct: 35 TATTWGYNGN-----LLGPAVKLQRGKAVTVDIYNQL--TEETTL 72
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta
barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans}
SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Length = 907
Score = 26.9 bits (60), Expect = 4.7
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 86 KTLGIPKDRMYISYIDSSTDVVGYNGTTF 114
+ LGI + +++ D T +G
Sbjct: 672 RPLGITPENIHLVMND--TSKTPNSGPAG 698
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur,
oxidoreductase, purine metabolism, molybdenum cofactor,
hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter
capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Length = 777
Score = 26.4 bits (59), Expect = 5.4
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 87 TLGIPKDRMYISYIDSSTDVVGYNGTTF 114
LGI ++ I + T V T
Sbjct: 503 VLGIDPVQVRI--TATDTSKVPNTSATA 528
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal;
trans-3-chloroacrylic acid dehalogenase, CAAD,
dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas
pavonaceae} PDB: 3ej3_A 1s0y_A 3ej7_A
Length = 76
Score = 24.3 bits (53), Expect = 9.4
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 1 MPVFRI---ETNIPKEKIPANFGKETGALVAKTLGKPENYVAVIV--VPDVNLVFGG 52
MP+ ++K ++++ G+P + ++ +N V G
Sbjct: 1 MPMISCDMRYGRTDEQK--RALSAGLLRVISEATGEPRENIFFVIREGSGINFVQHG 55
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH;
trans-3-chloroacrylic acid dehalogenase, CAAD,
dehalogenase, hydrolase; 2.41A {Chloroflexus
aurantiacus}
Length = 72
Score = 24.3 bits (53), Expect = 9.9
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 1 MPVFRI---ETNIPKEKIPANFGKETGALVAKTLGKPENYVAVIV--VPDVNLVFGG 52
M + RI E ++K A + A A P V +I+ VP + GG
Sbjct: 1 MLLLRITMLEGRSTEQK--AELARALSAAAAAAFDVPLAEVRLIIQEVPPTHWTVGG 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.390
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,635,390
Number of extensions: 155505
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 40
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)