RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2936
(174 letters)
>d2gdga1 d.80.1.3 (A:1-114) Microphage migration inhibition factor
(MIF) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 114
Score = 135 bits (342), Expect = 2e-42
Identities = 48/113 (42%), Positives = 71/113 (62%)
Query: 2 PVFRIETNIPKEKIPANFGKETGALVAKTLGKPENYVAVIVVPDVNLVFGGSDAPAAIAS 61
P+F + TN+P+ +P F E +A+ GKP Y+AV VVPD + F G++ P A+ S
Sbjct: 1 PMFIVNTNVPRASVPEGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTNDPCALCS 60
Query: 62 LMSIGKLGTAENKKHSAVLFPHIEKTLGIPKDRMYISYIDSSTDVVGYNGTTF 114
L SIGK+G A+N+ +S +L + L I DR+YI+Y D + VG+NG+TF
Sbjct: 61 LHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYDMNAANVGWNGSTF 113
>d1uiza_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF)
{African clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 115
Score = 135 bits (341), Expect = 2e-42
Identities = 48/114 (42%), Positives = 71/114 (62%)
Query: 1 MPVFRIETNIPKEKIPANFGKETGALVAKTLGKPENYVAVIVVPDVNLVFGGSDAPAAIA 60
MPVF I TN+ ++ +P + +AK GKP Y+A+ +VPD + FG S P A+
Sbjct: 1 MPVFTIRTNVCRDSVPDTLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTDPCAVC 60
Query: 61 SLMSIGKLGTAENKKHSAVLFPHIEKTLGIPKDRMYISYIDSSTDVVGYNGTTF 114
SL SIGK+G +NK ++ +L + K L IP +R+YI+Y D + VG+NG+TF
Sbjct: 61 SLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINYYDLNAANVGWNGSTF 114
>d1dpta_ d.80.1.3 (A:) D-dopachrome tautomerase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 135 bits (341), Expect = 3e-42
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 2 PVFRIETNIPKEKIPANFGKETGALVAKTLGKPENYVAVIVVPDVNLVFGGSDAPAAIAS 61
P ++TN+P ++PA K A A LGKP + V V V P + + GS P A S
Sbjct: 1 PFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLS 60
Query: 62 LMSIGKLGTAE-NKKHSAVLFPHIEKTLGIPKDRMYISYIDSSTDVVGYNGTTF 114
+ SIG +GTAE N+ HSA F + K L + +DR+ I + + +G GT
Sbjct: 61 ISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVM 114
>d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF)
{Trichinella spiralis [TaxId: 6334]}
Length = 113
Score = 132 bits (335), Expect = 2e-41
Identities = 56/113 (49%), Positives = 74/113 (65%)
Query: 2 PVFRIETNIPKEKIPANFGKETGALVAKTLGKPENYVAVIVVPDVNLVFGGSDAPAAIAS 61
P+F + TNI +P++F T ALV L KP +YVAV + D L FGGS PAA +
Sbjct: 1 PIFTLNTNIKATDVPSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTNPAAFGT 60
Query: 62 LMSIGKLGTAENKKHSAVLFPHIEKTLGIPKDRMYISYIDSSTDVVGYNGTTF 114
LMSIG + + N+ HSA LF H+ LGIPK+RMYI +++ + D VG+NGTTF
Sbjct: 61 LMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHFVNLNGDDVGWNGTTF 113
>d1mwwa_ d.80.1.4 (A:) Hypothetical protein HI1388.1 {Haemophilus
influenzae [TaxId: 727]}
Length = 120
Score = 64.8 bits (158), Expect = 8e-15
Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 6/113 (5%)
Query: 11 PKEKIP---ANFGKETGALVAKTLGKPENYVAVIVV---PDVNLVFGGSDAPAAIASLMS 64
K K+ + + L P+ A+ + + + +
Sbjct: 7 LKSKLAPRREKLAEVIYNSLHLGLDIPKGKHAIRFLCLEKEDFYYPFDRSDDYTVIEINL 66
Query: 65 IGKLGTAENKKHSAVLFPHIEKTLGIPKDRMYISYIDSSTDVVGYNGTTFHEI 117
+ K+ +LF +E LGI + I+ + G+ G T E
Sbjct: 67 MAGRMEGTKKRLIKMLFSELEYKLGIRAHDVEITIKEQPAHCWGFRGMTGDEA 119
>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase
molybdoprotein {Hydrogenophaga pseudoflava [TaxId:
47421]}
Length = 657
Score = 29.6 bits (65), Expect = 0.22
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 25 ALVAKTLGKPENYVAVIVVPDVNLVFGG--SDAPAAIASLMSIGKLG 69
+V+ G PE+ V ++ PD+ FG P + ++++ LG
Sbjct: 98 TVVSMLSGIPESKVRIV-SPDIGGGFGNKVGIYPGYVCAIVASIVLG 143
>d1dgja4 d.133.1.1 (A:311-906) Aldehyde oxidoreductase
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 596
Score = 28.1 bits (61), Expect = 0.58
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 25 ALVAKTLGKPENYVAVIVVPDVNLVFGGSDAPAAIA 60
++A LG V+V FG +P A
Sbjct: 88 LMIAPGLGLEFPKDLVLVQNTTGGTFGYKFSPTMEA 123
>d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha
subunit HrcA, C-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 636
Score = 27.7 bits (60), Expect = 0.79
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 22 ETGALVAKTLGKPENYVAVIVVPDVNLVFGG---SDAPAAIASLMS 64
VA L + VI P + FG + IA L++
Sbjct: 85 YVHLKVAACLQMDSARIRVI-KPFLGGGFGARTEALHFEIIAGLLA 129
>d2j5wa3 b.6.1.3 (A:347-553) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 207
Score = 27.0 bits (59), Expect = 0.98
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 86 KTLGIPKDRMYISYIDSS-TDVVGYNGTTFHEIFGGPVLNKRAMESIVLEFKNVLIKNQS 144
+ G K +Y Y D+S T+ H GPV+ ++I + F N S
Sbjct: 50 RIGGSYKKLVYREYTDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLS 109
Query: 145 TT 146
Sbjct: 110 IE 111
>d1vlba4 d.133.1.1 (A:311-907) Aldehyde oxidoreductase
{Desulfovibrio gigas [TaxId: 879]}
Length = 597
Score = 27.3 bits (59), Expect = 1.2
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 25 ALVAKTLGKPENYVAVIVVPDVNLVFGG--SDAPAAIASLMSI 65
++A +G + + V+V + FG S A+ ++ ++
Sbjct: 87 YMIAPGVGLEPDQL-VLVANPMGGTFGYKFSPTSEALVAVAAM 128
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large
subunit QorL {Pseudomonas putida [TaxId: 303]}
Length = 621
Score = 27.3 bits (59), Expect = 1.2
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 25 ALVAKTLGKPENYVAVIVVPDVNLVFGG---SDAPAAIASLMS 64
+VA PE+ + V VPDV FG + L+S
Sbjct: 66 TMVAMFCAIPEHLIEVR-VPDVGGGFGQKAHLHPEELLVCLLS 107
>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B,
C-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
Length = 654
Score = 26.4 bits (57), Expect = 2.1
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 25 ALVAKTLGKPENYVAVIVVPDVNLVFGG----SDAPAAIASLMS 64
VA LG + V V + + FGG + A ++ +
Sbjct: 81 HKVAHALGLAFHDVRVE-MRRMGGGFGGKESQGNHLAIACAVAA 123
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain
{Cow (Bos taurus) [TaxId: 9913]}
Length = 638
Score = 25.7 bits (55), Expect = 3.5
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 25 ALVAKTLGKPENYVAVIVVPDVNLVFGG---SDAPAAIASLMSIGKLG 69
+ VAK LG P N + V V + FGG ++A ++ K G
Sbjct: 80 SFVAKMLGVPVNRILVR-VKRMGGGFGGKETRSTLVSVAVALAAYKTG 126
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase
molybdoprotein {Oligotropha carboxidovorans, formerly
Pseudomonas carboxydovorans [TaxId: 40137]}
Length = 663
Score = 25.4 bits (54), Expect = 4.7
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 25 ALVAKTLGKPENYVAVIVVPDVNLVFGG--SDAPAAIASLMSIGKLGTA 71
+V+ G PE+ + VI PD+ FG + ++++ LG
Sbjct: 101 TVVSLISGLPEHKIHVI-APDIGGGFGNKVGAYSGYVCAVVASIVLGVP 148
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita
pepo var. medullosa) [TaxId: 3663]}
Length = 129
Score = 24.3 bits (52), Expect = 7.4
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 93 DRMYISYIDSSTDVVGYNGTTFHEIFGGPVLNKRAMESIVLEFKN 137
+ M+ + + V+G NG F GP + A +S+V+E N
Sbjct: 11 EYMFWAPNCNENIVMGINGQ-----FPGPTIRANAGDSVVVELTN 50
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.390
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 632,414
Number of extensions: 27565
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 19
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)