BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2937
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DMB|A Chain A, X-Ray Structure Of Human Hepatitus C Virus
Ns5a-Transactivated Protein 2 At The Resolution 1.9a,
Northeast Structural Genomics Consortium (Nesg) Target
Hr6723
pdb|4DMB|B Chain B, X-Ray Structure Of Human Hepatitus C Virus
Ns5a-Transactivated Protein 2 At The Resolution 1.9a,
Northeast Structural Genomics Consortium (Nesg) Target
Hr6723
Length = 204
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
Query: 61 RCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDR-MYTLFQEY 119
RC+ LAL+HD AECIVGD+ P + KEEKHRRE+EA K + L + +Y L++EY
Sbjct: 69 RCVRLALVHDXAECIVGDIAPADNIPKEEKHRREEEAXKQITQLLPEDLRKELYELWEEY 128
Query: 120 ESQETPEAKFVKELDIVDMLVQAFEYEKAQHID--LSEFFVPERYTFVFPLTKSMNEELE 177
E+Q + EAKFVK+LD + ++QA EYE +H L +F+ F P + ELE
Sbjct: 129 ETQSSAEAKFVKQLDQCEXILQASEYEDLEHKPGRLQDFYDSTAGKFNHPEIVQLVSELE 188
Query: 178 YE 179
E
Sbjct: 189 AE 190
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query: 2 YRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTP 43
YR AV ++ ++ +LN+ RC+ LAL+HD AECIVGD+ P
Sbjct: 51 YRXAVXAXVIKDD---RLNKDRCVRLALVHDXAECIVGDIAP 89
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 180 SQETPEAKFVKELDIVDMLVQAFEYEKAQHID--LSEFFVPERYTFVFPLTKSMNEELVK 237
+Q + EAKFVK+LD + ++QA EYE +H L +F+ F P + EL
Sbjct: 130 TQSSAEAKFVKQLDQCEXILQASEYEDLEHKPGRLQDFYDSTAGKFNHPEIVQLVSELEA 189
Query: 238 QRNELI 243
+R+ I
Sbjct: 190 ERSTNI 195
>pdb|1XX7|A Chain A, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|B Chain B, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|C Chain C, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|D Chain D, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|E Chain E, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|F Chain F, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
Length = 184
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 59/100 (59%), Gaps = 10/100 (10%)
Query: 59 IKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYT-LFQ 117
+++ +++A++HD+ E I+ DL +S ++ +E+ K LK + YT LF+
Sbjct: 65 VEKALKIAIIHDLGEAIITDLP----LSAQKYLNKEEAEAKALKDVLPE-----YTELFE 115
Query: 118 EYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFF 157
EY T E + VK D +DM++QA+EYE + +LSEF+
Sbjct: 116 EYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFW 155
>pdb|2CQZ|A Chain A, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|B Chain B, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|C Chain C, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|D Chain D, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|E Chain E, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|F Chain F, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
Length = 177
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 64/108 (59%), Gaps = 9/108 (8%)
Query: 50 EEKHRREDLIKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQG 109
E++ +R D +++ +++A++HD+AE I+ D+ P +K + E K +
Sbjct: 52 EKRGKRID-VEKALKMAIVHDLAEAIITDI-PLSAQEFVDKDKAEALVFKKVFP------ 103
Query: 110 DRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFF 157
Y L++EY+ +PEA+ V+ D +DM++QA++YE + + +L EF+
Sbjct: 104 -EFYELYREYQECSSPEAQLVRIADKLDMILQAYQYELSGNKNLDEFW 150
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 29/40 (72%)
Query: 177 EYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFF 216
EY+ +PEA+ V+ D +DM++QA++YE + + +L EF+
Sbjct: 111 EYQECSSPEAQLVRIADKLDMILQAYQYELSGNKNLDEFW 150
>pdb|3KH1|A Chain A, Crystal Structure Of Predicted Metal-Dependent
Phosphohydrolase (Zp_00055740.2) From Magnetospirillum
Magnetotacticum Ms-1 At 1.37 A Resolution
pdb|3KH1|B Chain B, Crystal Structure Of Predicted Metal-Dependent
Phosphohydrolase (Zp_00055740.2) From Magnetospirillum
Magnetotacticum Ms-1 At 1.37 A Resolution
Length = 200
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 59 IKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHT-QGDRMYTLFQ 117
I R L+HD+ E GD + E+K RE +A L L Q L+Q
Sbjct: 65 IGRVARXLLIHDIVEIDAGDTFIHDEAGNEDKEERERKAAARLFGLLPPDQAAEYSALWQ 124
Query: 118 EYESQETPEAKFVKELDIVDMLVQAFEYEKA 148
EYE++ET +A+F LD + L+ FE E
Sbjct: 125 EYEARETADARFADALDRLQPLLHNFETEGG 155
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 177 EYESQETPEAKFVKELDIVDMLVQAFEYEKA 207
EYE++ET +A+F LD + L+ FE E
Sbjct: 125 EYEARETADARFADALDRLQPLLHNFETEGG 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,148,782
Number of Sequences: 62578
Number of extensions: 283015
Number of successful extensions: 809
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 28
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)