BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2937
(257 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1LUI2|HDDC2_DANRE HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1
Length = 200
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Query: 61 RCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDR--MYTLFQE 118
RCM+LAL+HD+AECIVGD+ P VSK EKHRRE +AM + L G R +Y L++E
Sbjct: 56 RCMKLALVHDLAECIVGDIAPADNVSKAEKHRREKDAMVHITGLL-DDGLRKEIYNLWEE 114
Query: 119 YESQETPEAKFVKELDIVDMLVQAFEYE--KAQHIDLSEFFVPERYTF----VFPLTKSM 172
YE+Q +PEAK VKELD ++M++QA EYE + + L EFFV F V L KS+
Sbjct: 115 YETQSSPEAKLVKELDNLEMIIQAHEYEELEGKPGRLQEFFVSTEGKFHHPEVLGLLKSL 174
Query: 173 NEE 175
NEE
Sbjct: 175 NEE 177
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
Query: 177 EYESQETPEAKFVKELDIVDMLVQAFEYE--KAQHIDLSEFFVPERYTF----VFPLTKS 230
EYE+Q +PEAK VKELD ++M++QA EYE + + L EFFV F V L KS
Sbjct: 114 EYETQSSPEAKLVKELDNLEMIIQAHEYEELEGKPGRLQEFFVSTEGKFHHPEVLGLLKS 173
Query: 231 MNEELVKQ 238
+NEE +
Sbjct: 174 LNEERARH 181
>sp|P87242|YC0H_SCHPO HD domain-containing protein C4G3.17 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC4G3.17 PE=3 SV=1
Length = 198
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 69/103 (66%), Gaps = 7/103 (6%)
Query: 61 RCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSL-----CHTQGDRMYTL 115
RC+++A++HDMAE IVGD+TP+ VSKEEKHR E EAM ++ Q + + L
Sbjct: 61 RCLKIAVVHDMAESIVGDITPHENVSKEEKHRMESEAMVSITQQLIPLNLSLQAEEIKEL 120
Query: 116 FQEYESQETPEAKFVKELDIVDMLVQAFEYEKA--QHIDLSEF 156
F EYES TPEAKFVK++D +M+ Q FEYE+ DLS+F
Sbjct: 121 FLEYESASTPEAKFVKDIDKFEMIAQMFEYERKFNGEKDLSQF 163
>sp|Q66L17|HDDC2_XENLA HD domain-containing protein 2 OS=Xenopus laevis GN=hddc2 PE=2 SV=1
Length = 201
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 81/146 (55%), Gaps = 40/146 (27%)
Query: 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIK 60
MYRMAVM L ++ KLN+ RC+ LAL+HDMAECIVGD+ P ++KEEKHR+E K
Sbjct: 47 MYRMAVMAMLTEDR---KLNKDRCIRLALVHDMAECIVGDIAPADNIAKEEKHRKE---K 100
Query: 61 RCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYE 120
ME + L P + +KT +Y L++EYE
Sbjct: 101 AAMEH----------LTQLLP--------------DNLKT----------EVYDLWEEYE 126
Query: 121 SQETPEAKFVKELDIVDMLVQAFEYE 146
Q T EAKFVKELD +M++QA EYE
Sbjct: 127 HQFTAEAKFVKELDQCEMILQALEYE 152
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 177 EYESQETPEAKFVKELDIVDMLVQAFEYEKAQH--IDLSEFFVPERYTFVFPLTKSMNEE 234
EYE Q T EAKFVKELD +M++QA EYE+ + L +F+ F P +
Sbjct: 124 EYEHQFTAEAKFVKELDQCEMILQALEYEELEKRPGRLQDFYNSTAGKFKHPEIVQLVSA 183
Query: 235 LVKQRNELI 243
+ ++RN I
Sbjct: 184 IYEERNSAI 192
>sp|Q54FK1|HDDC2_DICDI HD domain-containing protein 2 homolog OS=Dictyostelium discoideum
GN=hddc2 PE=3 SV=1
Length = 190
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 75/123 (60%), Gaps = 6/123 (4%)
Query: 61 RCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAM-KTLKSLCHTQGDRMYTLFQEY 119
+ +++AL+HD+ E +VGD TP+ ++KEEK++ E A+ + +L G ++ L+QEY
Sbjct: 64 KIIKMALVHDLGESLVGDFTPHDKITKEEKYQLEKNAIIEITNTLSGEVGKEIFDLWQEY 123
Query: 120 ESQETPEAKFVKELDIVDMLVQAFEYEKAQH-----IDLSEFFVPERYTFVFPLTKSMNE 174
E +T EA VK+ D +M++QA+EYEK H I L FF R F PL KS+
Sbjct: 124 EDCKTNEALLVKDFDKFEMILQAYEYEKQPHQLENKIKLQSFFDSTRGKFHHPLFKSLAL 183
Query: 175 ELE 177
+LE
Sbjct: 184 QLE 186
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 70/153 (45%), Gaps = 27/153 (17%)
Query: 93 REDEAMKTLK-SLCHTQGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHI 151
+E + MK +K +L H G+ + F TP K KE + ++ EK I
Sbjct: 58 KEIDKMKIIKMALVHDLGESLVGDF-------TPHDKITKE--------EKYQLEKNAII 102
Query: 152 DLSEFFVPERYTFVFPLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQH-- 209
+++ E +F L + EYE +T EA VK+ D +M++QA+EYEK H
Sbjct: 103 EITNTLSGEVGKEIFDLWQ------EYEDCKTNEALLVKDFDKFEMILQAYEYEKQPHQL 156
Query: 210 ---IDLSEFFVPERYTFVFPLTKSMNEELVKQR 239
I L FF R F PL KS+ +L R
Sbjct: 157 ENKIKLQSFFDSTRGKFHHPLFKSLALQLESDR 189
>sp|P38331|YB92_YEAST HD domain-containing protein YBR242W OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YBR242W PE=1 SV=1
Length = 238
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 80/147 (54%), Gaps = 36/147 (24%)
Query: 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIK 60
MYR++++T L+ ++++NR +C+ +AL+HD+AE +VGD+TP + KEEKHRRE
Sbjct: 81 MYRLSIITMLI---KDSRVNRDKCVRIALVHDIAESLVGDITPVDPIGKEEKHRREWETI 137
Query: 61 RCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYE 120
+ + AL+ PY ++ +E + + YE
Sbjct: 138 KYLCNALIK-----------PYNEIAAKE----------------------IMDDWLAYE 164
Query: 121 SQETPEAKFVKELDIVDMLVQAFEYEK 147
+ + EA++VK++D +MLVQ FEYE+
Sbjct: 165 NVTSLEARYVKDIDKYEMLVQCFEYER 191
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 54/146 (36%)
Query: 61 RCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYE 120
+C+ +AL+HD+AE +VGD+TP + KEEKHRRE E T+K LC+
Sbjct: 100 KCVRIALVHDIAESLVGDITPVDPIGKEEKHRREWE---TIKYLCNA------------- 143
Query: 121 SQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELEYES 180
L++ + A+ I M++ L YE+
Sbjct: 144 ------------------LIKPYNEIAAKEI--------------------MDDWLAYEN 165
Query: 181 QETPEAKFVKELDIVDMLVQAFEYEK 206
+ EA++VK++D +MLVQ FEYE+
Sbjct: 166 VTSLEARYVKDIDKYEMLVQCFEYER 191
>sp|P53144|YGK1_YEAST HD domain-containing protein YGL101W OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YGL101W PE=1 SV=1
Length = 215
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 7/104 (6%)
Query: 61 RCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTL-KSL---CHTQGDR-MYTL 115
+C+ +AL+HD AE +VGD+TP ++KEEKHRRE E +K L +S+ C R +
Sbjct: 81 KCIRIALVHDFAESLVGDITPNDPMTKEEKHRREFETVKYLCESIIRPCSESASREILDD 140
Query: 116 FQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHI--DLSEFF 157
+ YE Q E ++VK++D +MLVQ FEYE+ + DL +F
Sbjct: 141 WLAYEKQTCLEGRYVKDIDKYEMLVQCFEYEQKYNGKKDLKQFL 184
>sp|Q0P565|HDDC2_BOVIN HD domain-containing protein 2 OS=Bos taurus GN=HDDC2 PE=2 SV=1
Length = 205
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 86/136 (63%), Gaps = 7/136 (5%)
Query: 47 VSKEEKHRREDLIKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCH 106
V+K+E H +D RC+ LAL+HDMAECIVGD+ P V +EEKHRRE+EAMK L L
Sbjct: 60 VTKDE-HLNKD---RCVRLALVHDMAECIVGDIAPADNVPREEKHRREEEAMKQLTQLLP 115
Query: 107 TQGDR-MYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHID--LSEFFVPERYT 163
+ +Y L++EYE+Q + EAKFVK+LD +M++QA EYE ++ L +F+
Sbjct: 116 EDLQKELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGK 175
Query: 164 FVFPLTKSMNEELEYE 179
F P + ELE E
Sbjct: 176 FSHPEIVQLVSELEAE 191
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 3/43 (6%)
Query: 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTP 43
MYRMAVM + + + LN+ RC+ LAL+HDMAECIVGD+ P
Sbjct: 51 MYRMAVMALVTKDEH---LNKDRCVRLALVHDMAECIVGDIAP 90
Score = 37.7 bits (86), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 180 SQETPEAKFVKELDIVDMLVQAFEYEKAQHID--LSEFFVPERYTFVFPLTKSMNEELVK 237
+Q + EAKFVK+LD +M++QA EYE ++ L +F+ F P + EL
Sbjct: 131 TQSSAEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKFSHPEIVQLVSELEA 190
Query: 238 QRNELIRNKTTQ 249
+RN I ++
Sbjct: 191 ERNANIAGAASE 202
>sp|Q7Z4H3|HDDC2_HUMAN HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1
Length = 204
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 78/122 (63%), Gaps = 3/122 (2%)
Query: 61 RCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDR-MYTLFQEY 119
RC+ LAL+HDMAECIVGD+ P + KEEKHRRE+EAMK + L + +Y L++EY
Sbjct: 69 RCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLRKELYELWEEY 128
Query: 120 ESQETPEAKFVKELDIVDMLVQAFEYEKAQHID--LSEFFVPERYTFVFPLTKSMNEELE 177
E+Q + EAKFVK+LD +M++QA EYE +H L +F+ F P + ELE
Sbjct: 129 ETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKFNHPEIVQLVSELE 188
Query: 178 YE 179
E
Sbjct: 189 AE 190
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 3/43 (6%)
Query: 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTP 43
MYRMAVM ++ ++ +LN+ RC+ LAL+HDMAECIVGD+ P
Sbjct: 50 MYRMAVMAMVIKDD---RLNKDRCVRLALVHDMAECIVGDIAP 89
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 180 SQETPEAKFVKELDIVDMLVQAFEYEKAQHID--LSEFFVPERYTFVFPLTKSMNEELVK 237
+Q + EAKFVK+LD +M++QA EYE +H L +F+ F P + EL
Sbjct: 130 TQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKFNHPEIVQLVSELEA 189
Query: 238 QRNELI 243
+R+ I
Sbjct: 190 ERSTNI 195
>sp|Q3SXD3|HDDC2_MOUSE HD domain-containing protein 2 OS=Mus musculus GN=Hddc2 PE=2 SV=1
Length = 199
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 78/122 (63%), Gaps = 3/122 (2%)
Query: 61 RCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDR-MYTLFQEY 119
RC+ LAL+HDMAECIVGD+ P + KEEKHRRE+EAMK + L + +Y L++EY
Sbjct: 64 RCIRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLRKELYELWEEY 123
Query: 120 ESQETPEAKFVKELDIVDMLVQAFEYEKAQHID--LSEFFVPERYTFVFPLTKSMNEELE 177
E+Q + EAKFVK+LD +M++QA EYE ++ L +F+ F P + ELE
Sbjct: 124 ETQSSEEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKFSHPEIVQLVSELE 183
Query: 178 YE 179
E
Sbjct: 184 TE 185
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 3/43 (6%)
Query: 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTP 43
MYRMAVM + + +LN+ RC+ LAL+HDMAECIVGD+ P
Sbjct: 45 MYRMAVMAMV---TRDDRLNKDRCIRLALVHDMAECIVGDIAP 84
Score = 38.5 bits (88), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 180 SQETPEAKFVKELDIVDMLVQAFEYEKAQHID--LSEFFVPERYTFVFPLTKSMNEELVK 237
+Q + EAKFVK+LD +M++QA EYE ++ L +F+ F P + EL
Sbjct: 125 TQSSEEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKFSHPEIVQLVSELET 184
Query: 238 QRNELIRNKTTQNGT 252
+RN + + + G+
Sbjct: 185 ERNASMATASAEPGS 199
>sp|B0JI84|SYA_MICAN Alanine--tRNA ligase OS=Microcystis aeruginosa (strain NIES-843)
GN=alaS PE=3 SV=1
Length = 874
Score = 32.7 bits (73), Expect = 2.3, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 15/106 (14%)
Query: 123 ETPEAKFVKELDIVDMLVQA-FEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELEYESQ 181
E EA+F++ L+ + L+++ E EK+Q + F + + Y F LT+ + EE +
Sbjct: 352 EREEARFLETLERGEKLLESILEKEKSQISGVDAFTLYDTYGFPLELTQEIAEE---QGL 408
Query: 182 ETPEAKFVKEL-----------DIVDMLVQAFEYEKAQHIDLSEFF 216
A F +E+ + +D+ VQ + A+HI +EF
Sbjct: 409 SVDTAGFEQEMKKQQQRSKAAHETIDLTVQGSLDKLAEHIHPTEFL 454
>sp|A4VU96|DAPA_STRSY 4-hydroxy-tetrahydrodipicolinate synthase OS=Streptococcus suis
(strain 05ZYH33) GN=dapA PE=3 SV=1
Length = 311
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 29 LLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLTPYCGVSKE 88
+++++ +V ++TP + E H +K C LA + + E D Y G +
Sbjct: 138 IIYNIPGRVVVEMTPETMLRLAE-HPNIIGVKECTSLANMAYLIEHKPEDFLIYTGEDGD 196
Query: 89 EKHRREDEAMKTLKSLCHTQGDRMYTLFQEYESQETPEAKFVK 131
H A + HT GD MY +F E Q+ A ++
Sbjct: 197 AFHAMNLGADGVISVASHTNGDEMYEMFTAIEQQDIRTAAAIQ 239
>sp|A4W0I7|DAPA_STRS2 4-hydroxy-tetrahydrodipicolinate synthase OS=Streptococcus suis
(strain 98HAH33) GN=dapA PE=3 SV=1
Length = 311
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 29 LLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLTPYCGVSKE 88
+++++ +V ++TP + E H +K C LA + + E D Y G +
Sbjct: 138 IIYNIPGRVVVEMTPETMLRLAE-HPNIIGVKECTSLANMAYLIEHKPEDFLIYTGEDGD 196
Query: 89 EKHRREDEAMKTLKSLCHTQGDRMYTLFQEYESQETPEAKFVK 131
H A + HT GD MY +F E Q+ A ++
Sbjct: 197 AFHAMNLGADGVISVASHTNGDEMYEMFTAIEQQDIRTAAAIQ 239
>sp|P48016|ATH1_YEAST Vacuolar acid trehalase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ATH1 PE=1 SV=1
Length = 1211
Score = 32.0 bits (71), Expect = 4.4, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 68 LHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYESQETPEA 127
L D A V ++ + G+ +E+ DE++ +++L H + + + L ++ +
Sbjct: 1070 LLDNAGIPVENVIDFDGIEQED-----DESLDDVQALLHWKKEDLAKLIEQIPRLNFLKR 1124
Query: 128 KFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTK 170
KFVK LD V + YE +++ L E R TF K
Sbjct: 1125 KFVKILDNVPVSPSEPYYEASRNQSLIEILPSNRTTFTIDYDK 1167
>sp|Q87R72|Y926_VIBPA UPF0207 protein VP0926 OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=VP0926 PE=3 SV=2
Length = 194
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 19 LNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGD 78
LN R LA+ HD +E + GDL E + I+ E LL + E D
Sbjct: 56 LNPERIALLAMYHDSSEVLTGDLPTPVKYYNPEIAKEYKKIEAAAEHKLLSMLPEEFQED 115
Query: 79 LTPYCGVSKEEKHRREDEAMKTLKSLC 105
P+ + H + + +K S+C
Sbjct: 116 FAPF--LLSHSSHEEDSQIVKQADSIC 140
>sp|Q8C1D8|IWS1_MOUSE Protein IWS1 homolog OS=Mus musculus GN=Iws1 PE=1 SV=1
Length = 766
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 52 KHRREDLIKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQG 109
KH +E + M L+++ + I G + Y G+++EE+ +R+ E M + L T G
Sbjct: 613 KHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTREEREQRDLEQMPQRRRLSSTGG 670
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,014,383
Number of Sequences: 539616
Number of extensions: 3753903
Number of successful extensions: 10599
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 10540
Number of HSP's gapped (non-prelim): 69
length of query: 257
length of database: 191,569,459
effective HSP length: 115
effective length of query: 142
effective length of database: 129,513,619
effective search space: 18390933898
effective search space used: 18390933898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)