Query psy2937
Match_columns 257
No_of_seqs 246 out of 1077
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 21:25:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3197|consensus 100.0 9.1E-44 2E-48 302.9 15.2 146 1-247 60-209 (210)
2 PF13023 HD_3: HD domain; PDB: 99.9 7.6E-27 1.6E-31 198.5 6.6 115 1-153 27-142 (165)
3 PRK03826 5'-nucleotidase; Prov 99.9 2.3E-23 4.9E-28 181.9 12.5 115 1-150 33-152 (195)
4 COG1896 Predicted hydrolases o 99.8 6.1E-19 1.3E-23 153.8 10.3 127 1-165 38-169 (193)
5 KOG3197|consensus 99.4 2.1E-13 4.5E-18 117.2 7.8 102 45-183 101-204 (210)
6 PF12917 HD_2: HD containing h 99.4 1.6E-12 3.5E-17 114.4 9.2 115 1-150 34-153 (215)
7 PRK03826 5'-nucleotidase; Prov 99.3 1.1E-11 2.3E-16 108.6 11.7 126 20-216 29-159 (195)
8 PF13023 HD_3: HD domain; PDB: 99.1 7.5E-11 1.6E-15 100.4 6.1 51 167-219 99-149 (165)
9 COG1896 Predicted hydrolases o 98.9 1.5E-08 3.2E-13 88.6 10.8 74 167-243 112-187 (193)
10 PF12917 HD_2: HD containing h 97.2 0.0066 1.4E-07 54.0 11.9 57 179-235 123-185 (215)
11 PRK10119 putative hydrolase; P 94.9 0.13 2.8E-06 46.4 8.0 30 3-34 32-61 (231)
12 TIGR03401 cyanamide_fam HD dom 92.1 1.2 2.6E-05 40.0 9.3 34 1-34 60-95 (228)
13 smart00471 HDc Metal dependent 90.9 1 2.2E-05 33.5 6.5 38 2-40 10-47 (124)
14 PF01966 HD: HD domain; Inter 90.5 0.61 1.3E-05 35.3 5.1 39 1-39 5-43 (122)
15 PRK12705 hypothetical protein; 89.1 0.78 1.7E-05 46.0 5.8 35 1-37 328-362 (508)
16 cd00077 HDc Metal dependent ph 83.3 0.53 1.2E-05 35.7 1.0 38 2-39 8-46 (145)
17 TIGR00277 HDIG uncharacterized 82.7 1.3 2.7E-05 31.4 2.7 34 2-37 10-43 (80)
18 TIGR00488 putative HD superfam 82.6 1.3 2.8E-05 37.0 3.1 33 1-35 13-45 (158)
19 TIGR00295 conserved hypothetic 82.3 1.1 2.4E-05 37.9 2.6 35 1-35 18-55 (164)
20 COG1418 Predicted HD superfami 81.4 1.3 2.8E-05 39.5 2.9 34 2-37 42-75 (222)
21 PRK07152 nadD putative nicotin 77.2 2 4.3E-05 40.5 2.8 34 1-36 201-234 (342)
22 PRK10119 putative hydrolase; P 75.3 6.9 0.00015 35.3 5.6 55 181-235 115-197 (231)
23 TIGR03319 YmdA_YtgF conserved 69.0 3.6 7.9E-05 41.2 2.6 33 2-36 335-367 (514)
24 PRK12704 phosphodiesterase; Pr 68.8 3.6 7.8E-05 41.3 2.5 35 1-37 340-374 (520)
25 PRK12703 tRNA 2'-O-methylase; 64.2 5.9 0.00013 37.8 2.8 31 2-34 193-223 (339)
26 KOG1981|consensus 56.5 83 0.0018 31.7 9.3 43 199-246 241-283 (513)
27 PRK00106 hypothetical protein; 50.9 12 0.00027 37.8 2.7 34 2-37 356-389 (535)
28 COG2206 c-di-GMP phosphodieste 50.9 14 0.00029 35.0 2.9 32 1-34 153-187 (344)
29 PRK13480 3'-5' exoribonuclease 49.5 16 0.00035 34.4 3.1 32 4-36 167-198 (314)
30 PF08668 HDOD: HDOD domain; I 45.6 23 0.00049 29.9 3.2 36 3-39 101-136 (196)
31 COG1713 Predicted HD superfami 43.9 25 0.00055 30.9 3.3 30 3-34 24-53 (187)
32 PF05794 Tcp11: T-complex prot 31.2 4.6E+02 0.0099 25.2 10.0 42 197-243 169-210 (441)
33 KOG1573|consensus 29.8 34 0.00073 29.8 1.7 35 33-82 104-148 (204)
34 TIGR03760 ICE_TraI_Pfluor inte 28.2 68 0.0015 28.6 3.5 34 3-36 74-120 (218)
35 PRK03007 deoxyguanosinetriphos 27.8 83 0.0018 31.0 4.3 47 3-64 77-123 (428)
36 COG3930 Uncharacterized protei 27.1 3.9E+02 0.0084 26.2 8.4 131 54-217 236-380 (434)
37 COG0232 Dgt dGTP triphosphohyd 22.6 1.3E+02 0.0027 29.7 4.4 26 121-146 201-226 (412)
38 COG1639 Predicted signal trans 21.9 85 0.0018 29.4 2.9 36 2-38 122-157 (289)
39 cd06006 R3H_unknown_2 R3H doma 20.7 56 0.0012 23.3 1.2 21 18-39 21-41 (59)
No 1
>KOG3197|consensus
Probab=100.00 E-value=9.1e-44 Score=302.92 Aligned_cols=146 Identities=48% Similarity=0.749 Sum_probs=127.1
Q ss_pred ChHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy2937 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLT 80 (257)
Q Consensus 1 ~~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~~GD~~~~~~~~~~~~~r~~~~~~~~~~~al~hdl~e~~vgDi~ 80 (257)
||||++|||++.+ ++||++||++||||||+||+++||| |
T Consensus 60 MYRM~llaml~~d---~~vnr~rC~kiAlVHD~AEslVgdi--------------------------------------t 98 (210)
T KOG3197|consen 60 MYRMALLAMLIKD---PGVNRERCMKIALVHDIAESLVGDI--------------------------------------T 98 (210)
T ss_pred HHHHHHHHHHhcC---CCcCHHHHHHHHHHHHHHHHHhCCC--------------------------------------C
Confidence 8999999999988 6999999999999999999999954 5
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHhhhCCChHHHHHhhhhhHHHHHHhHHHHHhccCccccccc
Q psy2937 81 PYCGVSKEEKHRREDEAMKTLKSLCHT--QGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFV 158 (257)
Q Consensus 81 ~~~~~~~~~k~~~E~~A~~~l~~~Lp~--~~~~~~~L~~EYE~~~T~EAK~vke~Dkl~~i~q~l~ye~~g~~~l~eff~ 158 (257)
|+|++++++|+++|-+|+..++.+|+. .+.+|.+||.|
T Consensus 99 P~~~vsKeeK~rre~eamk~ic~~l~~~~~akEi~elw~e---------------------------------------- 138 (210)
T KOG3197|consen 99 PSDGVSKEEKHRREFEAMKYICQLLIGELRAKEITELWLE---------------------------------------- 138 (210)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH----------------------------------------
Confidence 555566666666778889999998884 35566666655
Q ss_pred ccccccchhhhHHHHHHHHHhhcCCcchhhhchhhHHHHHHHHHHHHHhhC--CCchhhhhhhcccccChHHHHHHHHHH
Q psy2937 159 PERYTFVFPLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQH--IDLSEFFVPERYTFVFPLTKSMNEELV 236 (257)
Q Consensus 159 s~~~~i~tpevk~l~~eLeyE~~~t~ea~~vkd~DklemilQa~eYe~~~~--~~l~ef~~~~~~~~~t~~~k~~~~~l~ 236 (257)
||.++|+||+||||+||+|||+||+|||+.+| ++|++|| +|.|+|+||.+|.|+.+|+
T Consensus 139 -------------------YE~~ss~Eak~VKdlDK~eMi~QafEYE~~~ng~~~lq~F~-st~g~~~~~~vk~w~~el~ 198 (210)
T KOG3197|consen 139 -------------------YEEASSLEAKFVKDLDKFEMIVQAFEYEKKHNGEKDLQQFF-STVGKFKTPEVKKWVSELL 198 (210)
T ss_pred -------------------HHhcCchhHHHHHhhHHHHHHHHHHHHHHHhcccchHHHHH-HhcccccChHHHHHHHHHH
Confidence 56788999999999999999999999999886 6999999 7999999999999999999
Q ss_pred HhHHHHHHhcc
Q psy2937 237 KQRNELIRNKT 247 (257)
Q Consensus 237 ~~r~~~~~~~~ 247 (257)
.+|..+|++..
T Consensus 199 ~~R~~~~~~~~ 209 (210)
T KOG3197|consen 199 EERQKFIAAAE 209 (210)
T ss_pred HHHHHHHHhhc
Confidence 99999998753
No 2
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=99.93 E-value=7.6e-27 Score=198.49 Aligned_cols=115 Identities=38% Similarity=0.631 Sum_probs=97.1
Q ss_pred ChHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy2937 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLT 80 (257)
Q Consensus 1 ~~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~~GD~~~~~~~~~~~~~r~~~~~~~~~~~al~hdl~e~~vgDi~ 80 (257)
||+||++|+++++..+.++|++||++|||+||++|+++||+|+
T Consensus 27 S~~vA~~a~~la~~~~~~~d~~k~~~~aL~HDl~E~~~GDi~~------------------------------------- 69 (165)
T PF13023_consen 27 SWRVALIALLLAEEAGPDLDIEKVVKMALFHDLPEAITGDIPP------------------------------------- 69 (165)
T ss_dssp HHHHHHHHHHHHHHHH-HC-HHHHHHHHHHTTTTHHHH----H-------------------------------------
T ss_pred HHHHHHHHHHHhHHhcccCCHHHHHHHHhhccchhhhcCCCCC-------------------------------------
Confidence 7999999999999866679999999999999999999996666
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHhhhCCChHHHHHhhhhhHHHHHHhHHHHHhccCcc
Q psy2937 81 PYCGVSKEEKHRREDEAMKTLKSLCHT-QGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDL 153 (257)
Q Consensus 81 ~~~~~~~~~k~~~E~~A~~~l~~~Lp~-~~~~~~~L~~EYE~~~T~EAK~vke~Dkl~~i~q~l~ye~~g~~~l 153 (257)
++++....|+.+|.+|+++++++||. .+.++..||.||+.+.|+||++||++|++++++|++.|...++...
T Consensus 70 -~~~~~~~~~~~~E~~a~~~l~~~Lp~~l~~~~~~l~~E~e~~~s~ea~~vk~~D~l~~~lq~~~~~~~~~~~~ 142 (165)
T PF13023_consen 70 -PDGVDKEEKEEREEAAIEELFSLLPEELQEELKELWEEFEEGESPEAKLVKAADKLEPLLQALEYEGDGWSEF 142 (165)
T ss_dssp -HH-CCHHHHHHHHHHHHHHHCTTSSCHHHHHHHHHHHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHCCT-T-
T ss_pred -cccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhHHHHHHHHccccchHH
Confidence 33567788999999999999999997 5889999999999999999999999999999999999998776433
No 3
>PRK03826 5'-nucleotidase; Provisional
Probab=99.90 E-value=2.3e-23 Score=181.87 Aligned_cols=115 Identities=21% Similarity=0.240 Sum_probs=103.4
Q ss_pred ChHHHHHHHHccc----ccCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHhhhhhhc
Q psy2937 1 MYRMAVMTFLLDE----NNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIV 76 (257)
Q Consensus 1 ~~~~a~~~~~l~~----~~~~~~d~~r~~~mal~HDl~E~~~GD~~~~~~~~~~~~~r~~~~~~~~~~~al~hdl~e~~v 76 (257)
|||||+||++|+. .++.++|++||+.|||+||++|+++||||+
T Consensus 33 s~~vAliA~~La~i~~~~~~~~vd~~rv~~~aL~HDl~E~~tGDi~t--------------------------------- 79 (195)
T PRK03826 33 SLQVAMVAHALAVIKNRKFGGNLNAERIALLAMYHDASEVLTGDLPT--------------------------------- 79 (195)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcchHHHhcCCccc---------------------------------
Confidence 7999999999984 346789999999999999999999999987
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHhhhCCChHHHHHhhhhhHHHHHHhHHHHHhcc
Q psy2937 77 GDLTPYCGVSKEEKHRREDEAMKTLKSLCHT-QGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQH 150 (257)
Q Consensus 77 gDi~~~~~~~~~~k~~~E~~A~~~l~~~Lp~-~~~~~~~L~~EYE~~~T~EAK~vke~Dkl~~i~q~l~ye~~g~ 150 (257)
++.++++...+.+++.|.+|.+++++.||. .++.+..+|.+|+ ..|+|+++||++|++++++||+.|...|+
T Consensus 80 -PvK~~~~~~~~~~~~~E~~a~~~l~~~LP~~l~~~~~~~~~e~e-~~~~Ea~lvK~aDkL~a~l~a~~e~~~Gn 152 (195)
T PRK03826 80 -PVKYFNPEIAHEYKKIEKIAEQKLLDMLPEELQEDFRPLLDSHA-ASEEEKAIVKQADALCAYLKCLEELSAGN 152 (195)
T ss_pred -ccccccchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhccc-CCcHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 556677666677889999999999999997 5889999999986 68999999999999999999999998886
No 4
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=99.78 E-value=6.1e-19 Score=153.82 Aligned_cols=127 Identities=27% Similarity=0.423 Sum_probs=93.9
Q ss_pred ChHHHHHHHHccccc---CCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHhhhhhhcC
Q psy2937 1 MYRMAVMTFLLDENN---ETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVG 77 (257)
Q Consensus 1 ~~~~a~~~~~l~~~~---~~~~d~~r~~~mal~HDl~E~~~GD~~~~~~~~~~~~~r~~~~~~~~~~~al~hdl~e~~vg 77 (257)
||++|++|++++... +..+|++||+.|||+||++|+++||||+
T Consensus 38 s~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~~GDi~t---------------------------------- 83 (193)
T COG1896 38 SFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEALTGDIPT---------------------------------- 83 (193)
T ss_pred HHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHHhCCCCC----------------------------------
Confidence 799999999999765 3358999999999999999999999998
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhCCChHHHHHhhhhhHHHHHHhHHHHHhccCc--ccc
Q psy2937 78 DLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHID--LSE 155 (257)
Q Consensus 78 Di~~~~~~~~~~k~~~E~~A~~~l~~~Lp~~~~~~~~L~~EYE~~~T~EAK~vke~Dkl~~i~q~l~ye~~g~~~--l~e 155 (257)
+++...+ .+++.+.++.+.++..+.+...++.++|.+|+..+|+|+++|+++|++++++|++.|...++.+ +..
T Consensus 84 p~k~~~~----~~~~~~~e~e~~~~~~~~~~p~e~~~~~~~~~~~~s~ea~~vk~aDkl~~~l~~~~~~~~~~~~~~~~~ 159 (193)
T COG1896 84 PVKYARA----GLYKEEEEAEEAAIHLLFGLPEELLELFREYEKRSSLEARIVKDADKLELLLQALEYEQGGNGEDILKA 159 (193)
T ss_pred chhhhcc----hHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 3333222 2223333344444443333467899999999999999999999999999999999998744433 444
Q ss_pred cccccccccc
Q psy2937 156 FFVPERYTFV 165 (257)
Q Consensus 156 ff~s~~~~i~ 165 (257)
++....+...
T Consensus 160 ~~~~~~~l~~ 169 (193)
T COG1896 160 FLEAIIPLRR 169 (193)
T ss_pred HHHhhccccc
Confidence 4443333333
No 5
>KOG3197|consensus
Probab=99.45 E-value=2.1e-13 Score=117.24 Aligned_cols=102 Identities=42% Similarity=0.565 Sum_probs=77.0
Q ss_pred CCCchhhhhhhHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhCCC
Q psy2937 45 CGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYESQET 124 (257)
Q Consensus 45 ~~~~~~~~~r~~~~~~~~~~~al~hdl~e~~vgDi~~~~~~~~~~k~~~E~~A~~~l~~~Lp~~~~~~~~L~~EYE~~~T 124 (257)
|+||||||||||-. .+.+|.+.+.| .... +++..+.- + |++ +.|
T Consensus 101 ~~vsKeeK~rre~e--------amk~ic~~l~~--------~~~a---------kEi~elw~----e----YE~---~ss 144 (210)
T KOG3197|consen 101 DGVSKEEKHRREFE--------AMKYICQLLIG--------ELRA---------KEITELWL----E----YEE---ASS 144 (210)
T ss_pred CCccHHHHHHHHHH--------HHHHHHHHhcc--------hhhH---------HHHHHHHH----H----HHh---cCc
Confidence 57999999999984 35667776654 1111 11221111 1 233 479
Q ss_pred hHHHHHhhhhhHHHHHHhHHHHHhccC--cccccccccccccchhhhHHHHHHHHHhhcCC
Q psy2937 125 PEAKFVKELDIVDMLVQAFEYEKAQHI--DLSEFFVPERYTFVFPLTKSMNEELEYESQET 183 (257)
Q Consensus 125 ~EAK~vke~Dkl~~i~q~l~ye~~g~~--~l~eff~s~~~~i~tpevk~l~~eLeyE~~~t 183 (257)
+|||+||++|+++||+||++|++.++. ++++|| ++.++|.+|+++.|..+|..+++..
T Consensus 145 ~Eak~VKdlDK~eMi~QafEYE~~~ng~~~lq~F~-st~g~~~~~~vk~w~~el~~~R~~~ 204 (210)
T KOG3197|consen 145 LEAKFVKDLDKFEMIVQAFEYEKKHNGEKDLQQFF-STVGKFKTPEVKKWVSELLEERQKF 204 (210)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHhcccchHHHHH-HhcccccChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987764 689999 9999999999999999988877653
No 6
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=99.38 E-value=1.6e-12 Score=114.37 Aligned_cols=115 Identities=19% Similarity=0.244 Sum_probs=84.5
Q ss_pred ChHHHHHHHHccc---ccCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHhhhhhhcC
Q psy2937 1 MYRMAVMTFLLDE---NNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVG 77 (257)
Q Consensus 1 ~~~~a~~~~~l~~---~~~~~~d~~r~~~mal~HDl~E~~~GD~~~~~~~~~~~~~r~~~~~~~~~~~al~hdl~e~~vg 77 (257)
||++|.+|..|+. .+|..||..++..+||.||++|+++|||++
T Consensus 34 Sf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~FtGDI~T---------------------------------- 79 (215)
T PF12917_consen 34 SFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIFTGDIKT---------------------------------- 79 (215)
T ss_dssp HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGTS----S----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHHcCCCCC----------------------------------
Confidence 6999999999995 457789999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHH-Hhccc-chHHHHHHHHHhhhCCChHHHHHhhhhhHHHHHHhHHHHHhcc
Q psy2937 78 DLTPYCGVSKEEKHRREDEAMKTLK-SLCHT-QGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQH 150 (257)
Q Consensus 78 Di~~~~~~~~~~k~~~E~~A~~~l~-~~Lp~-~~~~~~~L~~EYE~~~T~EAK~vke~Dkl~~i~q~l~ye~~g~ 150 (257)
+++++.+...+.-.+.|+...+++. +.+|. ..+.+.....| -..+|.|.++++.+|+++.++.|++.-+.||
T Consensus 80 PVKy~tPelr~~~~~VE~~m~~~~i~~~iP~e~q~~Y~~~l~E-~KDdt~EG~Iv~~ADkidal~e~~~Ei~~GN 153 (215)
T PF12917_consen 80 PVKYATPELREMLAQVEEEMTENFIKKEIPEEFQEAYRRRLKE-GKDDTLEGQIVKAADKIDALYECFGEIQKGN 153 (215)
T ss_dssp -SSSS-HHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHS----SSSHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhhc-CCcccHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888877666666688888888866 57886 46666666554 2346899999999999999999999988887
No 7
>PRK03826 5'-nucleotidase; Provisional
Probab=99.34 E-value=1.1e-11 Score=108.57 Aligned_cols=126 Identities=19% Similarity=0.221 Sum_probs=77.6
Q ss_pred CHHHHHHHHHH-hhhhhh---hhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHhhhhhhcCCCC-CCCCCChHHHHHHH
Q psy2937 20 NRTRCMELALL-HDMAEC---IVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLT-PYCGVSKEEKHRRE 94 (257)
Q Consensus 20 d~~r~~~mal~-HDl~E~---~~GD~~~~~~~~~~~~~r~~~~~~~~~~~al~hdl~e~~vgDi~-~~~~~~~~~k~~~E 94 (257)
-.++...+|++ |-++.+ ..| ...++.|+++|||+||++|.++|||+ |.....+.
T Consensus 29 VAeHs~~vAliA~~La~i~~~~~~---------------~~vd~~rv~~~aL~HDl~E~~tGDi~tPvK~~~~~------ 87 (195)
T PRK03826 29 VSEHSLQVAMVAHALAVIKNRKFG---------------GNLNAERIALLAMYHDASEVLTGDLPTPVKYFNPE------ 87 (195)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcC---------------CCCCHHHHHHHHHhcchHHHhcCCcccccccccch------
Confidence 45778888877 888754 233 11236899999999999999999995 32111111
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHhhhCCChHHHHHhhhhhHHHHHHhHHHHHhccCcccccccccccccchhhhHHHHH
Q psy2937 95 DEAMKTLKSLCHTQGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNE 174 (257)
Q Consensus 95 ~~A~~~l~~~Lp~~~~~~~~L~~EYE~~~T~EAK~vke~Dkl~~i~q~l~ye~~g~~~l~eff~s~~~~i~tpevk~l~~ 174 (257)
+.+.+.+.|. ...+.++..+..+ -.+.+..+|.
T Consensus 88 -----------------~~~~~~~~E~------------~a~~~l~~~LP~~------------------l~~~~~~~~~ 120 (195)
T PRK03826 88 -----------------IAHEYKKIEK------------IAEQKLLDMLPEE------------------LQEDFRPLLD 120 (195)
T ss_pred -----------------hHHHHHHHHH------------HHHHHHHHhCCHH------------------HHHHHHHHHh
Confidence 1112222221 1122222222110 0144555553
Q ss_pred HHHHhhcCCcchhhhchhhHHHHHHHHHHHHHhhCCCchhhh
Q psy2937 175 ELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFF 216 (257)
Q Consensus 175 eLeyE~~~t~ea~~vkd~DklemilQa~eYe~~~~~~l~ef~ 216 (257)
++ ...|+|+++||++|+|++++||.+|.+.||..+....
T Consensus 121 --e~-e~~~~Ea~lvK~aDkL~a~l~a~~e~~~Gn~ef~~a~ 159 (195)
T PRK03826 121 --SH-AASEEEKAIVKQADALCAYLKCLEELSAGNNEFNLAK 159 (195)
T ss_pred --cc-cCCcHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 33 4688899999999999999999999999976544433
No 8
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=99.13 E-value=7.5e-11 Score=100.37 Aligned_cols=51 Identities=37% Similarity=0.498 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHhhcCCcchhhhchhhHHHHHHHHHHHHHhhCCCchhhhhhh
Q psy2937 167 PLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPE 219 (257)
Q Consensus 167 pevk~l~~eLeyE~~~t~ea~~vkd~DklemilQa~eYe~~~~~~l~ef~~~~ 219 (257)
+.++.+|. +||.+.|+||+|||++|+|++++|+.+|+..++...+-+++..
T Consensus 99 ~~~~~l~~--E~e~~~s~ea~~vk~~D~l~~~lq~~~~~~~~~~~~~~~~~~~ 149 (165)
T PF13023_consen 99 EELKELWE--EFEEGESPEAKLVKAADKLEPLLQALEYEGDGWSEFEIFLSQF 149 (165)
T ss_dssp HHHHHHHH--HHHHT-SHHHHHHHHHHHHHHHHHHHHHHHCCT-T--TTTHHH
T ss_pred HHHHHHHH--HhhcCCCHHHHHHHHhhhhhHHHHHHHHccccchHHHHHHHHH
Confidence 67778885 7999999999999999999999999999998876554444433
No 9
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=98.89 E-value=1.5e-08 Score=88.63 Aligned_cols=74 Identities=27% Similarity=0.292 Sum_probs=61.2
Q ss_pred hhhHHHHHHHHHhhcCCcchhhhchhhHHHHHHHHHHHHHhhCC--CchhhhhhhcccccChHHHHHHHHHHHhHHHHH
Q psy2937 167 PLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHI--DLSEFFVPERYTFVFPLTKSMNEELVKQRNELI 243 (257)
Q Consensus 167 pevk~l~~eLeyE~~~t~ea~~vkd~DklemilQa~eYe~~~~~--~l~ef~~~~~~~~~t~~~k~~~~~l~~~r~~~~ 243 (257)
.+++++|. +|+..+|+|+++||++|+++|++|+.+|...++. ++..|+... -.+.+.....+..++...+..+|
T Consensus 112 ~e~~~~~~--~~~~~~s~ea~~vk~aDkl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~ 187 (193)
T COG1896 112 EELLELFR--EYEKRSSLEARIVKDADKLELLLQALEYEQGGNGEDILKAFLEAI-IPLRRGEAQKYFLELFEALLELR 187 (193)
T ss_pred HHHHHHHH--HHHccCCHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHhh-ccccchHHHHHHHHHHHHHHHHh
Confidence 56777775 6888999999999999999999999999985543 589998744 47888888888888877777766
No 10
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=97.19 E-value=0.0066 Score=54.04 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=36.2
Q ss_pred hhcCCcchhhhchhhHHHHHHHHHHHHHhhCCC--chhhhhhhcccc----cChHHHHHHHHH
Q psy2937 179 ESQETPEAKFVKELDIVDMLVQAFEYEKAQHID--LSEFFVPERYTF----VFPLTKSMNEEL 235 (257)
Q Consensus 179 E~~~t~ea~~vkd~DklemilQa~eYe~~~~~~--l~ef~~~~~~~~----~t~~~k~~~~~l 235 (257)
....|.|.++|+=+||++.++.++.--+.||.. ..+-|..+..++ ..|.|.=..+.+
T Consensus 123 ~KDdt~EG~Iv~~ADkidal~e~~~Ei~~GN~E~~F~e~y~e~l~~i~~~~~~~sV~yFl~~~ 185 (215)
T PF12917_consen 123 GKDDTLEGQIVKAADKIDALYECFGEIQKGNPEKVFKEIYRESLEKIKKFRDMPSVQYFLKEI 185 (215)
T ss_dssp --SSSHHHHHHHHHHHHHHHHHHHHHHHTT-S-THHHHHHHHHHHHHHTTTTSHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 334789999999999999999999988888865 333333233232 245555444444
No 11
>PRK10119 putative hydrolase; Provisional
Probab=94.86 E-value=0.13 Score=46.38 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=21.8
Q ss_pred HHHHHHHHcccccCCCCCHHHHHHHHHHhhhh
Q psy2937 3 RMAVMTFLLDENNETKLNRTRCMELALLHDMA 34 (257)
Q Consensus 3 ~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~ 34 (257)
||.=+|..|+.. .+.|..-+...|++||++
T Consensus 32 RV~~lA~~Ia~~--e~~D~~vv~lAAlLHDv~ 61 (231)
T PRK10119 32 RVWATAQKLAAD--DDVDMLVVLTACYFHDIV 61 (231)
T ss_pred HHHHHHHHHHHh--cCCCHHHHHHHHHHhhcc
Confidence 566666667665 467888888888888884
No 12
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=92.10 E-value=1.2 Score=39.97 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=28.2
Q ss_pred ChHHHHHHHHccccc--CCCCCHHHHHHHHHHhhhh
Q psy2937 1 MYRMAVMTFLLDENN--ETKLNRTRCMELALLHDMA 34 (257)
Q Consensus 1 ~~~~a~~~~~l~~~~--~~~~d~~r~~~mal~HDl~ 34 (257)
++|+..+|..++..- +.+.|.+-+..-||+||++
T Consensus 60 s~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG 95 (228)
T TIGR03401 60 SLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIG 95 (228)
T ss_pred HHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhc
Confidence 478999999998742 2379999999999999997
No 13
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=90.91 E-value=1 Score=33.55 Aligned_cols=38 Identities=29% Similarity=0.263 Sum_probs=28.9
Q ss_pred hHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhhhcC
Q psy2937 2 YRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGD 40 (257)
Q Consensus 2 ~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~~GD 40 (257)
++++.++..+++..+. .|...+...||+||++....++
T Consensus 10 ~~v~~~~~~l~~~~~~-~~~~~~~~a~LlHDig~~~~~~ 47 (124)
T smart00471 10 LRVAQLAAALAEELGL-LDIELLLLAALLHDIGKPGTPD 47 (124)
T ss_pred HHHHHHHHHHHHHcCh-HHHHHHHHHHHHHcccCccCCH
Confidence 5777888888876321 3778889999999999877773
No 14
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=90.51 E-value=0.61 Score=35.28 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=28.7
Q ss_pred ChHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhhhc
Q psy2937 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVG 39 (257)
Q Consensus 1 ~~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~~G 39 (257)
+.+|+-+|..++...+.+.|...+...||+||++-...+
T Consensus 5 s~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~~~ 43 (122)
T PF01966_consen 5 SLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIPTP 43 (122)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHSTH
T ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCCCc
Confidence 357777887777763223788888899999999876655
No 15
>PRK12705 hypothetical protein; Provisional
Probab=89.12 E-value=0.78 Score=45.97 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=29.0
Q ss_pred ChHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhh
Q psy2937 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECI 37 (257)
Q Consensus 1 ~~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~ 37 (257)
|.++|.+|..||.. .|+|++.+...+|+||++.++
T Consensus 328 Sl~VA~lA~~LA~~--lGld~d~a~~AGLLHDIGK~i 362 (508)
T PRK12705 328 SLEVAHLAGIIAAE--IGLDPALAKRAGLLHDIGKSI 362 (508)
T ss_pred HHHHHHHHHHHHHH--cCcCHHHHHHHHHHHHcCCcc
Confidence 45788999999987 568999999999999998764
No 16
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=83.33 E-value=0.53 Score=35.68 Aligned_cols=38 Identities=24% Similarity=0.141 Sum_probs=28.3
Q ss_pred hHHHHHHHHcccccC-CCCCHHHHHHHHHHhhhhhhhhc
Q psy2937 2 YRMAVMTFLLDENNE-TKLNRTRCMELALLHDMAECIVG 39 (257)
Q Consensus 2 ~~~a~~~~~l~~~~~-~~~d~~r~~~mal~HDl~E~~~G 39 (257)
++++.++..++.... .+.|...+...||+||+++...+
T Consensus 8 ~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~~~ 46 (145)
T cd00077 8 LRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPGTP 46 (145)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCccCc
Confidence 567777777776521 25778889999999999988766
No 17
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=82.67 E-value=1.3 Score=31.41 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=26.5
Q ss_pred hHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhh
Q psy2937 2 YRMAVMTFLLDENNETKLNRTRCMELALLHDMAECI 37 (257)
Q Consensus 2 ~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~ 37 (257)
.+++.++..++.. .++|.+.+...||+||++...
T Consensus 10 ~~v~~~a~~la~~--~~~~~~~l~~AalLHDiG~~~ 43 (80)
T TIGR00277 10 LEVAKLAEALARE--LGLDVELARRGALLHDIGKPI 43 (80)
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHccCCcc
Confidence 4678888888876 468888888889999987543
No 18
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=82.62 E-value=1.3 Score=36.99 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=29.0
Q ss_pred ChHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhh
Q psy2937 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAE 35 (257)
Q Consensus 1 ~~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E 35 (257)
|.++|.+|-.+|..+ ++|.+++..-+|+||++.
T Consensus 13 sl~Va~~a~~lA~~~--~~d~e~a~~AGLLHDIGk 45 (158)
T TIGR00488 13 CLGVGQTAKQLAEAN--KLDSKKAEIAGAYHDLAK 45 (158)
T ss_pred HHHHHHHHHHHHHHh--CcCHHHHHHHHHHHHHhc
Confidence 467899999999874 589999999999999996
No 19
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=82.34 E-value=1.1 Score=37.92 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=28.6
Q ss_pred ChHHHHHHHHcccccC---CCCCHHHHHHHHHHhhhhh
Q psy2937 1 MYRMAVMTFLLDENNE---TKLNRTRCMELALLHDMAE 35 (257)
Q Consensus 1 ~~~~a~~~~~l~~~~~---~~~d~~r~~~mal~HDl~E 35 (257)
|.+|+.+|..++..++ .++|.+.+..-||+||++-
T Consensus 18 s~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK 55 (164)
T TIGR00295 18 CLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGR 55 (164)
T ss_pred HHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCc
Confidence 4688999999998753 2489999999999999974
No 20
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=81.43 E-value=1.3 Score=39.55 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=29.4
Q ss_pred hHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhh
Q psy2937 2 YRMAVMTFLLDENNETKLNRTRCMELALLHDMAECI 37 (257)
Q Consensus 2 ~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~ 37 (257)
-||+-+|..++.. .|+|+.-+..-||+||++=+.
T Consensus 42 ~~Va~lA~~Ia~~--~g~D~~l~~~aaLLHDIg~~~ 75 (222)
T COG1418 42 LRVAYLAYRIAEE--EGVDPDLALRAALLHDIGKAI 75 (222)
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHhhcccc
Confidence 4789999999997 678999999999999997544
No 21
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=77.19 E-value=2 Score=40.47 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=29.4
Q ss_pred ChHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhh
Q psy2937 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAEC 36 (257)
Q Consensus 1 ~~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~ 36 (257)
|.++|.+|..||.. .++|.+.+..-+|+||++-.
T Consensus 201 Sl~VA~~A~~LA~~--~g~d~~~a~~AGLLHDIGK~ 234 (342)
T PRK07152 201 CLRVAQLAAELAKK--NNLDPKKAYYAGLYHDITKE 234 (342)
T ss_pred HHHHHHHHHHHHHH--hCcCHHHHHHHHHHHHhhcc
Confidence 46899999999987 46888999999999999864
No 22
>PRK10119 putative hydrolase; Provisional
Probab=75.27 E-value=6.9 Score=35.30 Aligned_cols=55 Identities=24% Similarity=0.230 Sum_probs=40.0
Q ss_pred cCCcchhhhchhhHHHH-----HHHHHHHHHhhCC--------------------Cchhhhh---hhcccccChHHHHHH
Q psy2937 181 QETPEAKFVKELDIVDM-----LVQAFEYEKAQHI--------------------DLSEFFV---PERYTFVFPLTKSMN 232 (257)
Q Consensus 181 ~~t~ea~~vkd~Dklem-----ilQa~eYe~~~~~--------------------~l~ef~~---~~~~~~~t~~~k~~~ 232 (257)
..|+|+++|+|+|+|+- |.+++-|--..+. .++-|+. -....++|+.+|.++
T Consensus 115 p~tlE~kIVQDADRLDAiGAIGIaR~f~~gG~~gr~~~d~~~~~~~~~~~~~~~~~i~HF~eKLl~L~~~m~T~~gr~lA 194 (231)
T PRK10119 115 PLTLEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDAEDPFAQHRPLDDKQYALDHFQTKLLKLPQTMQTERGKQLA 194 (231)
T ss_pred CCCHHHhhhhhHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCcchhhccccCchhHHHHHHHHHHhhHhhCCCHHHHHHH
Confidence 44899999999999997 7889999543222 2344543 125689999999999
Q ss_pred HHH
Q psy2937 233 EEL 235 (257)
Q Consensus 233 ~~l 235 (257)
++=
T Consensus 195 ~~R 197 (231)
T PRK10119 195 QHN 197 (231)
T ss_pred HHH
Confidence 853
No 23
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=68.97 E-value=3.6 Score=41.24 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=27.9
Q ss_pred hHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhh
Q psy2937 2 YRMAVMTFLLDENNETKLNRTRCMELALLHDMAEC 36 (257)
Q Consensus 2 ~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~ 36 (257)
.++|.+|..||.. .|+|++.+..-+|+||++-.
T Consensus 335 ~~VA~lA~~LA~~--lgld~~~a~~AGLLHDIGK~ 367 (514)
T TIGR03319 335 IEVAHLAGIMAAE--LGEDVKLAKRAGLLHDIGKA 367 (514)
T ss_pred HHHHHHHHHHHHH--hCcCHHHHHHHHHHHhcCcc
Confidence 5789999999987 46899999999999999754
No 24
>PRK12704 phosphodiesterase; Provisional
Probab=68.76 E-value=3.6 Score=41.35 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=28.7
Q ss_pred ChHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhh
Q psy2937 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECI 37 (257)
Q Consensus 1 ~~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~ 37 (257)
+.++|.+|..+|.. .|+|.+.+...+|+||++-+.
T Consensus 340 s~~Va~lA~~lA~~--lgld~~~a~~AgLLHDIGK~~ 374 (520)
T PRK12704 340 SIEVAHLAGLMAAE--LGLDVKLAKRAGLLHDIGKAL 374 (520)
T ss_pred HHHHHHHHHHHHHH--hCcCHHHHHHHHHHHccCcCc
Confidence 35789999999987 568999999999999987653
No 25
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=64.16 E-value=5.9 Score=37.81 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=23.4
Q ss_pred hHHHHHHHHcccccCCCCCHHHHHHHHHHhhhh
Q psy2937 2 YRMAVMTFLLDENNETKLNRTRCMELALLHDMA 34 (257)
Q Consensus 2 ~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~ 34 (257)
.||+-+|..++.. .++|...+..-||+||++
T Consensus 193 ~rVa~lA~~LA~~--~~~D~~ll~aAALLHDIG 223 (339)
T PRK12703 193 KTVYKLAMRIADC--INADRRLVAAGALLHDIG 223 (339)
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHhcc
Confidence 4677777778776 467888777778888885
No 26
>KOG1981|consensus
Probab=56.50 E-value=83 Score=31.75 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=29.1
Q ss_pred HHHHHHHHhhCCCchhhhhhhcccccChHHHHHHHHHHHhHHHHHHhc
Q psy2937 199 VQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELVKQRNELIRNK 246 (257)
Q Consensus 199 lQa~eYe~~~~~~l~ef~~~~~~~~~t~~~k~~~~~l~~~r~~~~~~~ 246 (257)
=++++||++. .+.|+. .+..-.|.++.|.+.....-..-|-..
T Consensus 241 ~~sveyEkk~---Fqk~l~--~~~~~l~~t~~WL~~~~~e~~~~~~e~ 283 (513)
T KOG1981|consen 241 ENSVEYEKKK---FQKLLG--QAPVSLPFTRQWLDKARSELETEKLEH 283 (513)
T ss_pred HhhHHHHHHH---HHHHHh--hCCCCCcHHHHHHHHHhcccccccccc
Confidence 4567888765 566665 456778999999988876655445433
No 27
>PRK00106 hypothetical protein; Provisional
Probab=50.94 E-value=12 Score=37.77 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=27.8
Q ss_pred hHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhh
Q psy2937 2 YRMAVMTFLLDENNETKLNRTRCMELALLHDMAECI 37 (257)
Q Consensus 2 ~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~ 37 (257)
-.+|.+|..+|..+ |+|++.+-..+|+||++-++
T Consensus 356 v~VA~lA~~lA~~l--gld~e~a~~AGLLHDIGK~v 389 (535)
T PRK00106 356 VEVGKLAGILAGEL--GENVALARRAGFLHDMGKAI 389 (535)
T ss_pred HHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCcc
Confidence 35788888888874 57999999999999998764
No 28
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=50.89 E-value=14 Score=34.97 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=22.9
Q ss_pred ChHHHHHHHHcccccCCCCCHHHHHHH---HHHhhhh
Q psy2937 1 MYRMAVMTFLLDENNETKLNRTRCMEL---ALLHDMA 34 (257)
Q Consensus 1 ~~~~a~~~~~l~~~~~~~~d~~r~~~m---al~HDl~ 34 (257)
|.|+|.+|..+|.. .|++.+++..+ |++||++
T Consensus 153 s~~va~~a~~ia~~--lgl~~~~i~~l~~aalLHDIG 187 (344)
T COG2206 153 SVRVAELAEAIAKK--LGLSEEKIEELALAGLLHDIG 187 (344)
T ss_pred HHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhcc
Confidence 57899999999998 46777666443 5566665
No 29
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=49.54 E-value=16 Score=34.43 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=23.9
Q ss_pred HHHHHHHcccccCCCCCHHHHHHHHHHhhhhhh
Q psy2937 4 MAVMTFLLDENNETKLNRTRCMELALLHDMAEC 36 (257)
Q Consensus 4 ~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~ 36 (257)
|+=+|..++.. .+.+|++-++.-||+||++=+
T Consensus 167 v~~~~~~l~~~-y~~~n~dll~agalLHDiGKi 198 (314)
T PRK13480 167 MLRLAKSICDL-YPSLNKDLLYAGIILHDLGKV 198 (314)
T ss_pred HHHHHHHHHHh-ccccCHHHHHHHHHHHHhhhH
Confidence 45556666665 467999999999999999743
No 30
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=45.64 E-value=23 Score=29.90 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=25.2
Q ss_pred HHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhhhc
Q psy2937 3 RMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVG 39 (257)
Q Consensus 3 ~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~~G 39 (257)
..|.+|..++... ...+++.+...+|+||+++.+.=
T Consensus 101 ~~a~~a~~la~~~-~~~~~~~a~~~gLL~~iG~l~l~ 136 (196)
T PF08668_consen 101 AAAAIARRLAREL-GFDDPDEAYLAGLLHDIGKLLLL 136 (196)
T ss_dssp HHHHHHHHHHHHC-TCCHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhHHHHH
Confidence 4566666667663 23346999999999999976543
No 31
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=43.95 E-value=25 Score=30.86 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=22.1
Q ss_pred HHHHHHHHcccccCCCCCHHHHHHHHHHhhhh
Q psy2937 3 RMAVMTFLLDENNETKLNRTRCMELALLHDMA 34 (257)
Q Consensus 3 ~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~ 34 (257)
||+=+|.-||+. -++|.+||-.-+|+||++
T Consensus 24 ~V~~~A~~LA~~--y~~d~~kA~~AgilHD~a 53 (187)
T COG1713 24 GVAETAIELAEA--YGLDPEKAYLAGILHDIA 53 (187)
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHH
Confidence 566667777776 467888877778888876
No 32
>PF05794 Tcp11: T-complex protein 11; InterPro: IPR008862 This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences. Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the Saccharomyces cerevisiae Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants [].
Probab=31.17 E-value=4.6e+02 Score=25.21 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhCCCchhhhhhhcccccChHHHHHHHHHHHhHHHHH
Q psy2937 197 MLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELVKQRNELI 243 (257)
Q Consensus 197 milQa~eYe~~~~~~l~ef~~~~~~~~~t~~~k~~~~~l~~~r~~~~ 243 (257)
++=++++||++. .++++. .+....+.+++|.......-..-+
T Consensus 169 L~~~sv~yEr~~---F~~~l~--~~~~~l~~T~~Wl~~~~~~~~~~~ 210 (441)
T PF05794_consen 169 LIEHSVEYERKK---FQERLE--KGPNSLPRTKAWLKRARSELESEA 210 (441)
T ss_pred HHHHHHHHHHHH---HHHHHH--hCcCChHHHHHHHHHHHHHHhccc
Confidence 345678888876 555553 557888999999988776654444
No 33
>KOG1573|consensus
Probab=29.79 E-value=34 Score=29.80 Aligned_cols=35 Identities=34% Similarity=0.417 Sum_probs=23.8
Q ss_pred hhhhhhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHhhhhh----------hcCCCCCC
Q psy2937 33 MAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAEC----------IVGDLTPY 82 (257)
Q Consensus 33 l~E~~~GD~~~~~~~~~~~~~r~~~~~~~~~~~al~hdl~e~----------~vgDi~~~ 82 (257)
-||+|--|-|--+|+- -.||+||||+- +|||+.|.
T Consensus 104 tAE~iR~~~Pd~dWlH---------------LtaLiHDLGKvl~f~GepQWAVvGDTfpV 148 (204)
T KOG1573|consen 104 TAEAIRKDYPDEDWLH---------------LTALIHDLGKVLAFGGEPQWAVVGDTFPV 148 (204)
T ss_pred HHHHHHHhCCCccHHH---------------HHHHHHHHHHHHHhcCCcceeeecCcccc
Confidence 5777777777655422 24788888864 48998874
No 34
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=28.24 E-value=68 Score=28.59 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=20.3
Q ss_pred HHHHHHHHccccc--CCCCCHH-----------HHHHHHHHhhhhhh
Q psy2937 3 RMAVMTFLLDENN--ETKLNRT-----------RCMELALLHDMAEC 36 (257)
Q Consensus 3 ~~a~~~~~l~~~~--~~~~d~~-----------r~~~mal~HDl~E~ 36 (257)
.|+.+|.-++... +++.+++ =++..||+|||+..
T Consensus 74 ev~~~a~~l~~~y~~p~~~~~e~~~~~~~~w~~~~~~aaLlHDlgK~ 120 (218)
T TIGR03760 74 EVTAAAVRLSKGYLLPPGAAPEEQAAQSDAWNAAVFYAALLHDLGKL 120 (218)
T ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHhhhhh
Confidence 3555666666543 4455544 25666788888765
No 35
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=27.80 E-value=83 Score=31.03 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=33.8
Q ss_pred HHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCchhhhhhhHHHHHHHHH
Q psy2937 3 RMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCME 64 (257)
Q Consensus 3 ~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~~GD~~~~~~~~~~~~~r~~~~~~~~~~ 64 (257)
-+|-+|-.++.. .++|..-+...||+|||+ =||| +|-.|..+..+++
T Consensus 77 ev~~~~r~~~~~--~~~~~~~~~~~~l~hd~G------hpPf-------gH~gE~~l~~~~~ 123 (428)
T PRK03007 77 EVAQIGRGIAAG--LGCDPDLVDLAGLAHDIG------HPPY-------GHNGERALDEVAA 123 (428)
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHhcCC------CCCC-------cccHHHHHHHHHH
Confidence 355566666665 457888899999999997 3455 5777887777765
No 36
>COG3930 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.14 E-value=3.9e+02 Score=26.17 Aligned_cols=131 Identities=15% Similarity=0.204 Sum_probs=77.6
Q ss_pred hhHHH-HHHHHHHHHHHhhhhhhcCCCCCCCCCChHHHHHHHHHHHHHHH-Hhccc--chHHHHHHHHHhhhCCChHHHH
Q psy2937 54 RREDL-IKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLK-SLCHT--QGDRMYTLFQEYESQETPEAKF 129 (257)
Q Consensus 54 r~~~~-~~~~~~~al~hdl~e~~vgDi~~~~~~~~~~k~~~E~~A~~~l~-~~Lp~--~~~~~~~L~~EYE~~~T~EAK~ 129 (257)
+|.+. -+|-++--+.|+++=-+ .|.|++-+.-- +++ .-||+ ...+...++.||-.+-..-.++
T Consensus 236 ~~~t~~~~~~V~~Ll~HEigVHl---~TtfNG~sQpl----------r~F~~Glpg~t~~QEGLAilaEylAg~mt~eRL 302 (434)
T COG3930 236 RRDTLMEERRVRALLSHEIGVHL---LTTFNGSSQPL----------RLFRAGLPGYTGTQEGLAILAEYLAGGMTPERL 302 (434)
T ss_pred hhhhhcCHHHHHHHHHhhhheee---eeeecCCcCce----------eeeeccCCCcchhhhHHHHHHHHHhcCCCHHHH
Confidence 45555 34556666789998665 35788765331 233 34554 2467889999999887777776
Q ss_pred HhhhhhHHHHHHhHH---------HH-HhccCcccccccccccccchhhhHHHHHHHHHhhcCCcchhhhchhhHHHHHH
Q psy2937 130 VKELDIVDMLVQAFE---------YE-KAQHIDLSEFFVPERYTFVFPLTKSMNEELEYESQETPEAKFVKELDIVDMLV 199 (257)
Q Consensus 130 vke~Dkl~~i~q~l~---------ye-~~g~~~l~eff~s~~~~i~tpevk~l~~eLeyE~~~t~ea~~vkd~Dklemil 199 (257)
.+-+.+.-.+-.++. +- ..+|.+.+.-|. .-. . -|. | .-|+||+=.|+-.+
T Consensus 303 r~La~Rvla~~amldga~f~dvfh~ltrE~G~dredaf~------------~~~-R-VyR-G----ggftKD~iYLrGfi 363 (434)
T COG3930 303 RLLANRVLACAAMLDGADFLDVFHFLTREHGFDREDAFN------------NVL-R-VYR-G----GGFTKDAIYLRGFI 363 (434)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHhhCcchHhHhh------------HHH-h-hhc-c----CCcchhHHHHHHHH
Confidence 666665544333331 11 112211111111 000 0 122 2 22999999999999
Q ss_pred HHHHHHHhhCCCchhhhh
Q psy2937 200 QAFEYEKAQHIDLSEFFV 217 (257)
Q Consensus 200 Qa~eYe~~~~~~l~ef~~ 217 (257)
+-..|-+.++ .|+.||-
T Consensus 364 ~~ld~lq~~~-ald~l~~ 380 (434)
T COG3930 364 LILDHLQLGG-ALDPLWM 380 (434)
T ss_pred HHHHHHHhcC-CCChhhh
Confidence 9999977665 7888985
No 37
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=22.64 E-value=1.3e+02 Score=29.74 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=21.4
Q ss_pred hCCChHHHHHhhhhhHHHHHHhHHHH
Q psy2937 121 SQETPEAKFVKELDIVDMLVQAFEYE 146 (257)
Q Consensus 121 ~~~T~EAK~vke~Dkl~~i~q~l~ye 146 (257)
...++|+.++..+|.+...+..++..
T Consensus 201 ~~~~leaqi~~~ADdiaY~~hDleD~ 226 (412)
T COG0232 201 VTRSLEAQIMDLADDIAYSVHDLEDG 226 (412)
T ss_pred cccChhHHHhhhccchHhhhcchhhc
Confidence 36789999999999998888887664
No 38
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms]
Probab=21.89 E-value=85 Score=29.44 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=30.9
Q ss_pred hHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhhh
Q psy2937 2 YRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIV 38 (257)
Q Consensus 2 ~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~~ 38 (257)
++.|.+|+.|++..+ ..+.+++..-.|+|.+++.+.
T Consensus 122 ~~~A~ia~~La~~~g-~~~~~~~y~~gLLh~lG~l~l 157 (289)
T COG1639 122 IETAMIAEGLARALG-RADSDEAYTAGLLHNLGILVL 157 (289)
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHccHHHH
Confidence 678999999998844 589999999999999997653
No 39
>cd06006 R3H_unknown_2 R3H domain of a group of fungal proteins with unknown function. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=20.67 E-value=56 Score=23.32 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHhhhhhhhhc
Q psy2937 18 KLNRTRCMELALLHDMAECIVG 39 (257)
Q Consensus 18 ~~d~~r~~~mal~HDl~E~~~G 39 (257)
.+.+..-..-++||||++. .|
T Consensus 21 ~f~pM~~~~R~~vHdla~~-~g 41 (59)
T cd06006 21 RFPPMRSPQRAFIHELAKD-YG 41 (59)
T ss_pred eCCCCCHHHHHHHHHHHHH-cC
Confidence 3566667788999999998 66
Done!