Query psy2937
Match_columns 257
No_of_seqs 246 out of 1077
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 21:25:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dmb_A HD domain-containing pr 100.0 1.7E-37 5.8E-42 271.0 14.7 147 1-248 50-199 (204)
2 1ynb_A Hypothetical protein AF 100.0 7.3E-31 2.5E-35 223.9 2.3 126 1-243 43-171 (173)
3 3kh1_A Predicted metal-depende 100.0 1.4E-28 4.7E-33 214.1 11.5 136 1-175 45-187 (200)
4 1xx7_A Oxetanocin-like protein 99.9 2.1E-28 7.3E-33 210.4 8.1 135 1-241 42-183 (184)
5 2cqz_A 177AA long hypothetical 99.9 1.4E-25 4.7E-30 191.2 10.2 134 1-240 37-177 (177)
6 2paq_A 5'-deoxynucleotidase YF 99.9 7.7E-24 2.6E-28 184.1 8.9 116 1-151 36-156 (201)
7 3mzo_A LIN2634 protein; HD-dom 99.9 3.4E-22 1.1E-26 175.7 9.8 115 1-150 35-154 (216)
8 2gz4_A Hypothetical protein AT 99.5 8.1E-14 2.8E-18 121.6 8.3 91 1-146 60-152 (207)
9 3mzo_A LIN2634 protein; HD-dom 99.4 3.4E-12 1.2E-16 112.0 12.1 33 179-211 124-156 (216)
10 3kh1_A Predicted metal-depende 99.3 1.2E-11 4.2E-16 107.3 9.9 69 167-238 117-191 (200)
11 2paq_A 5'-deoxynucleotidase YF 99.3 5.5E-12 1.9E-16 109.3 7.2 64 167-237 116-186 (201)
12 4dmb_A HD domain-containing pr 98.9 1.4E-09 4.8E-14 94.6 6.7 62 123-184 132-195 (204)
13 1xx7_A Oxetanocin-like protein 98.2 1.2E-06 4.1E-11 74.8 5.4 58 123-181 121-182 (184)
14 2cqz_A 177AA long hypothetical 98.0 6.1E-06 2.1E-10 69.6 5.3 58 122-180 115-176 (177)
15 1ynb_A Hypothetical protein AF 97.8 1.5E-05 5E-10 67.5 4.6 51 130-183 120-170 (173)
16 2gz4_A Hypothetical protein AT 97.6 8.3E-05 2.8E-09 64.6 6.3 25 180-204 127-151 (207)
17 3b57_A LIN1889 protein; Q92AN1 96.8 0.0045 1.5E-07 52.8 8.9 58 181-238 111-187 (209)
18 3dto_A BH2835 protein; all alp 96.4 0.024 8.2E-07 49.3 10.8 31 2-34 31-61 (223)
19 3djb_A Hydrolase, HD family; a 95.6 0.034 1.2E-06 48.2 7.8 32 2-35 31-62 (223)
20 2qgs_A Protein Se1688; alpha-h 94.2 0.3 1E-05 41.8 10.0 57 181-237 111-199 (225)
21 2pjq_A Uncharacterized protein 93.1 0.42 1.4E-05 41.2 9.0 31 2-34 36-66 (231)
22 2pq7_A Predicted HD superfamil 93.0 0.23 7.9E-06 42.1 7.0 30 2-33 39-68 (220)
23 3gw7_A Uncharacterized protein 89.5 0.25 8.6E-06 43.2 3.7 31 2-34 31-61 (239)
24 2o08_A BH1327 protein; putativ 85.6 0.33 1.1E-05 40.3 2.0 34 1-36 23-56 (188)
25 3ccg_A HD superfamily hydrolas 85.0 0.36 1.2E-05 40.1 2.0 34 1-36 24-57 (190)
26 2ogi_A Hypothetical protein SA 84.4 0.39 1.3E-05 40.1 2.0 34 1-36 31-64 (196)
27 3gw7_A Uncharacterized protein 75.7 2.2 7.6E-05 37.1 3.9 56 181-236 115-198 (239)
28 3hc1_A Uncharacterized HDOD do 65.7 3.6 0.00012 36.4 3.0 37 2-39 124-160 (305)
29 3m1t_A Putative phosphohydrola 61.8 3.9 0.00013 35.7 2.4 36 2-39 111-146 (275)
30 3ljx_A MMOQ response regulator 61.4 5.4 0.00018 35.0 3.3 37 2-39 114-150 (288)
31 3tm8_A BD1817, uncharacterized 51.3 5.1 0.00018 36.0 1.4 33 2-36 172-208 (328)
32 3i7a_A Putative metal-dependen 49.0 8.2 0.00028 33.6 2.3 36 2-37 123-163 (281)
33 3mem_A Putative signal transdu 40.3 16 0.00054 34.3 3.0 38 2-39 284-323 (457)
34 1vqr_A Hypothetical protein CJ 40.2 11 0.00036 33.1 1.6 19 19-37 146-164 (297)
35 2hek_A Hypothetical protein; p 27.1 20 0.00068 33.1 1.2 33 2-36 56-89 (371)
36 2dqb_A Deoxyguanosinetriphosph 27.1 33 0.0011 31.8 2.7 30 3-34 82-111 (376)
37 3kq5_A Hypothetical cytosolic 26.8 38 0.0013 31.7 3.1 35 3-37 83-119 (393)
38 3nqw_A CG11900; stringent resp 25.0 2.7E+02 0.0093 22.5 7.8 20 122-141 111-130 (179)
No 1
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=271.03 Aligned_cols=147 Identities=46% Similarity=0.769 Sum_probs=130.1
Q ss_pred ChHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy2937 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLT 80 (257)
Q Consensus 1 ~~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~~GD~~~~~~~~~~~~~r~~~~~~~~~~~al~hdl~e~~vgDi~ 80 (257)
|||||+||++|++. ++|++||++|||+||++|+++||| +
T Consensus 50 S~~vAliA~~l~~~---~vD~~r~~~maL~HDl~E~~tGDi--------------------------------------t 88 (204)
T 4dmb_A 50 MYRMAVMAMVIKDD---RLNKDRCVRLALVHDMAECIVGDI--------------------------------------A 88 (204)
T ss_dssp HHHHHHHHHHSCCT---TSCHHHHHHHHHHTTTTHHHHCCC--------------------------------------C
T ss_pred HHHHHHHHHHHccc---cCCHHHHHHHHHhcchHHhhcCCC--------------------------------------c
Confidence 79999999999973 699999999999999999999955 4
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHhhhCCChHHHHHhhhhhHHHHHHhHHHHHhccCcccccccc
Q psy2937 81 PYCGVSKEEKHRREDEAMKTLKSLCHT-QGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVP 159 (257)
Q Consensus 81 ~~~~~~~~~k~~~E~~A~~~l~~~Lp~-~~~~~~~L~~EYE~~~T~EAK~vke~Dkl~~i~q~l~ye~~g~~~l~eff~s 159 (257)
|++.++++.|+.+|..|+++++++||. .+++|.+||.||
T Consensus 89 p~k~~~~~~k~~~E~~A~~~l~~~LP~~~~~e~~~Lw~Ey---------------------------------------- 128 (204)
T 4dmb_A 89 PADNIPKEEKHRREEEAMKQITQLLPEDLRKELYELWEEY---------------------------------------- 128 (204)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH----------------------------------------
T ss_pred cccccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----------------------------------------
Confidence 566677888889999999999999996 466777777775
Q ss_pred cccccchhhhHHHHHHHHHhhcCCcchhhhchhhHHHHHHHHHHHHHhhCC--CchhhhhhhcccccChHHHHHHHHHHH
Q psy2937 160 ERYTFVFPLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHI--DLSEFFVPERYTFVFPLTKSMNEELVK 237 (257)
Q Consensus 160 ~~~~i~tpevk~l~~eLeyE~~~t~ea~~vkd~DklemilQa~eYe~~~~~--~l~ef~~~~~~~~~t~~~k~~~~~l~~ 237 (257)
|.++|+|++|||++|||++++||++|++.||. +|++||.++.++|+||.+++|+++|++
T Consensus 129 -------------------e~~~t~Ea~~vK~aDkle~llqa~ey~~~Gn~~~~l~~ff~~~~~~~~~~~~~~~~~~l~~ 189 (204)
T 4dmb_A 129 -------------------ETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKFNHPEIVQLVSELEA 189 (204)
T ss_dssp -------------------HHTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTTHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred -------------------HcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56678888999999999999999999999986 999999999999999999999999999
Q ss_pred hHHHHHHhccc
Q psy2937 238 QRNELIRNKTT 248 (257)
Q Consensus 238 ~r~~~~~~~~~ 248 (257)
+|+.+| +.+.
T Consensus 190 ~r~~~~-~~~~ 199 (204)
T 4dmb_A 190 ERSTNI-AAAA 199 (204)
T ss_dssp HHHHHH-HHHH
T ss_pred HHHHHH-hhhc
Confidence 999999 4443
No 2
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=99.96 E-value=7.3e-31 Score=223.87 Aligned_cols=126 Identities=21% Similarity=0.277 Sum_probs=104.9
Q ss_pred ChHHHHHHHHcccccCCCCCH---HHHHHHHHHhhhhhhhhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHhhhhhhcC
Q psy2937 1 MYRMAVMTFLLDENNETKLNR---TRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVG 77 (257)
Q Consensus 1 ~~~~a~~~~~l~~~~~~~~d~---~r~~~mal~HDl~E~~~GD~~~~~~~~~~~~~r~~~~~~~~~~~al~hdl~e~~vg 77 (257)
|||||+||++|+.. .++|+ .||+.|||+||++|+++||||++.
T Consensus 43 S~~vA~iA~~la~~--~~vd~~~~~r~~~maL~HDl~E~~~GDi~~~~-------------------------------- 88 (173)
T 1ynb_A 43 NFRAAIIAFILALK--SGESVEKACKAATAALFHDLHEARTMDLHKIA-------------------------------- 88 (173)
T ss_dssp HHHHHHHHHHHHHH--TTCCHHHHHHHHHHHHHTTTTHHHHCCCCTTG--------------------------------
T ss_pred HHHHHHHHHHHhhh--cCCChhHHHHHHHHHHHcchHHhhccCCCccc--------------------------------
Confidence 79999999999986 68999 999999999999999999888741
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhCCChHHHHHhhhhhHHHHHHhHHHHHhccCcccccc
Q psy2937 78 DLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFF 157 (257)
Q Consensus 78 Di~~~~~~~~~~k~~~E~~A~~~l~~~Lp~~~~~~~~L~~EYE~~~T~EAK~vke~Dkl~~i~q~l~ye~~g~~~l~eff 157 (257)
.++.+ .+|++|++++++.| ++.+||.||
T Consensus 89 --k~~~~-------~~E~~a~~~l~~~L-----e~~~Lw~Ey-------------------------------------- 116 (173)
T 1ynb_A 89 --RRYVS-------CDEEGAREEQLSWM-----ESKPDFSDV-------------------------------------- 116 (173)
T ss_dssp --GGTCC-------CCHHHHHHHHTTTC-----SSCCCCGGG--------------------------------------
T ss_pred --ccccc-------HHHHHHHHHHHHhh-----hHHHHHHHH--------------------------------------
Confidence 11211 34777877777654 344444444
Q ss_pred cccccccchhhhHHHHHHHHHhhcCCcchhhhchhhHHHHHHHHHHHHHhhCCCchhhhhhhcccccChHHHHHHHHHHH
Q psy2937 158 VPERYTFVFPLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELVK 237 (257)
Q Consensus 158 ~s~~~~i~tpevk~l~~eLeyE~~~t~ea~~vkd~DklemilQa~eYe~~~~~~l~ef~~~~~~~~~t~~~k~~~~~l~~ 237 (257)
|. |||++|||++++|+.+|++. |.+|++||.++ +|+||.+|+|+++|++
T Consensus 117 ---------------------e~-------~vk~~Dkle~llq~~ey~~~-~~~~~~f~~~~--~~~t~~~~~~~~~i~~ 165 (173)
T 1ynb_A 117 ---------------------EV-------YVSDADKLELAFQGVEYSQQ-VSYAIRFAENV--ELKTDAAKEIYRVLME 165 (173)
T ss_dssp ---------------------HH-------HHHHHHHHHHHHHHHHHTTT-CGGGGGGGSSC--CCCSHHHHHHHHHHHH
T ss_pred ---------------------HH-------HHHHHHHHHHHHHHHHHHHh-cccHHHHHHHh--hccCHHHHHHHHHHHH
Confidence 33 99999999999999999999 99999999988 9999999999999999
Q ss_pred hHHHHH
Q psy2937 238 QRNELI 243 (257)
Q Consensus 238 ~r~~~~ 243 (257)
+|+.+|
T Consensus 166 ~~~~~w 171 (173)
T 1ynb_A 166 RKNPVW 171 (173)
T ss_dssp HCCCCC
T ss_pred hhHHhh
Confidence 998765
No 3
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=99.95 E-value=1.4e-28 Score=214.15 Aligned_cols=136 Identities=26% Similarity=0.337 Sum_probs=111.0
Q ss_pred ChHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy2937 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLT 80 (257)
Q Consensus 1 ~~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~~GD~~~~~~~~~~~~~r~~~~~~~~~~~al~hdl~e~~vgDi~ 80 (257)
|||||+||++|++.++.++|++||++|||+||++|+++||+|
T Consensus 45 S~~vAliA~~la~~~~~~vd~~r~~~maL~HDl~E~~tGDi~-------------------------------------- 86 (200)
T 3kh1_A 45 SWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVEIDAGDTF-------------------------------------- 86 (200)
T ss_dssp HHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTHHHHCCCC--------------------------------------
T ss_pred HHHHHHHHHHHHHHccCCCCHHHHHHHHHhcChHHHHhCCcc--------------------------------------
Confidence 799999999999987778999999999999999999999554
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHhhhCCChHHHHHhhhhhHHHHHHhHHHHH----hccCcccc
Q psy2937 81 PYCGVSKEEKHRREDEAMKTLKSLCHT-QGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEK----AQHIDLSE 155 (257)
Q Consensus 81 ~~~~~~~~~k~~~E~~A~~~l~~~Lp~-~~~~~~~L~~EYE~~~T~EAK~vke~Dkl~~i~q~l~ye~----~g~~~l~e 155 (257)
||+++....|+++|.+|+++++++||. .+.++.+||.|||+++|+|+++||++|++++++|++.|+. .+++..++
T Consensus 87 ~~~~~~~~~~~~~E~~A~~~l~~~LP~~~~~e~~~Lw~EyE~~~t~Ea~~vK~~Dkl~~~lqa~~~~g~~w~~~gv~~~q 166 (200)
T 3kh1_A 87 IHDEAGNEDKEERERKAAARLFGLLPPDQAAEYSALWQEYEARETADARFADALDRLQPLLHNFETEGGTWKPHGVTRAK 166 (200)
T ss_dssp TTCCC---CHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHTTSTTTTTTTCBHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCCccccCccHHH
Confidence 566666777889999999999999997 5889999999999999999999999999999999999963 34456677
Q ss_pred cccccccccc--hhhhHHHHHH
Q psy2937 156 FFVPERYTFV--FPLTKSMNEE 175 (257)
Q Consensus 156 ff~s~~~~i~--tpevk~l~~e 175 (257)
++.. +..+. .|.+-++...
T Consensus 167 ~~~~-~~~i~~~~~~lw~~~~~ 187 (200)
T 3kh1_A 167 VDKL-LPRIEAGSKRLGAYARA 187 (200)
T ss_dssp HHHH-HHHHHHHCHHHHHHHHH
T ss_pred HHHH-hHHHhhcCHHHHHHHHH
Confidence 7653 33333 4555454433
No 4
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=99.95 E-value=2.1e-28 Score=210.39 Aligned_cols=135 Identities=30% Similarity=0.492 Sum_probs=109.9
Q ss_pred ChHHHHHHHHcccc---cCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHhhhhhhcC
Q psy2937 1 MYRMAVMTFLLDEN---NETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVG 77 (257)
Q Consensus 1 ~~~~a~~~~~l~~~---~~~~~d~~r~~~mal~HDl~E~~~GD~~~~~~~~~~~~~r~~~~~~~~~~~al~hdl~e~~vg 77 (257)
|||||+||++|+.. ++.++|++||+.|||+||++|+++||+|.
T Consensus 42 S~~vA~ia~~la~~~~~~~~~~d~~r~~~~aL~HDl~E~~~GDip~---------------------------------- 87 (184)
T 1xx7_A 42 SYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPL---------------------------------- 87 (184)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHHHCCCCH----------------------------------
T ss_pred HHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHcCcHHhhcCCCCC----------------------------------
Confidence 79999999999975 35799999999999999999999998843
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhCCChHHHHHhhhhhHHHHHHhHHHHHhccCcccccc
Q psy2937 78 DLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFF 157 (257)
Q Consensus 78 Di~~~~~~~~~~k~~~E~~A~~~l~~~Lp~~~~~~~~L~~EYE~~~T~EAK~vke~Dkl~~i~q~l~ye~~g~~~l~eff 157 (257)
.....+.++++|.+++++++ +++.+||.|
T Consensus 88 -----~~~~~~~~~~~E~~a~~~ll-------~e~~~l~~e--------------------------------------- 116 (184)
T 1xx7_A 88 -----SAQKYLNKEEAEAKALKDVL-------PEYTELFEE--------------------------------------- 116 (184)
T ss_dssp -----HHHTTSCHHHHHHHHHHHHC-------GGGHHHHHH---------------------------------------
T ss_pred -----cccchHHHHHHHHHHHHHHH-------HHHHHHHHH---------------------------------------
Confidence 11123445678888877772 344455555
Q ss_pred cccccccchhhhHHHHHHHHHhhcCCcchhhhchhhHHHHHHHHHHHHHhhCCCchhhhhhhccccc----ChHHHHHHH
Q psy2937 158 VPERYTFVFPLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFV----FPLTKSMNE 233 (257)
Q Consensus 158 ~s~~~~i~tpevk~l~~eLeyE~~~t~ea~~vkd~DklemilQa~eYe~~~~~~l~ef~~~~~~~~~----t~~~k~~~~ 233 (257)
|+.+.|+|++|||++|+|++++||++|+..|+.++++||.++. +++ ||.+|+|++
T Consensus 117 --------------------ye~~~t~Ea~~vK~aDkl~a~lqa~~~~~~g~~~~~~~~~~~~-~l~~~~~t~~~~~l~~ 175 (184)
T 1xx7_A 117 --------------------YSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALE-DLEKLEISRYLREIIE 175 (184)
T ss_dssp --------------------HHHCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGGGHHH-HHTTSGGGGGCHHHHH
T ss_pred --------------------HhCCCCHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHH-HHHhccCCHHHHHHHH
Confidence 4467888999999999999999999999999999999999888 999 999999999
Q ss_pred HHHHhHHH
Q psy2937 234 ELVKQRNE 241 (257)
Q Consensus 234 ~l~~~r~~ 241 (257)
+|+++|+.
T Consensus 176 ~i~~~r~~ 183 (184)
T 1xx7_A 176 EVRRLKDD 183 (184)
T ss_dssp HHHHC---
T ss_pred HHHHHhhc
Confidence 99999975
No 5
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=99.92 E-value=1.4e-25 Score=191.24 Aligned_cols=134 Identities=23% Similarity=0.469 Sum_probs=107.7
Q ss_pred ChHHHHHHHHcccc---cCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHhhhhhhcC
Q psy2937 1 MYRMAVMTFLLDEN---NETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVG 77 (257)
Q Consensus 1 ~~~~a~~~~~l~~~---~~~~~d~~r~~~mal~HDl~E~~~GD~~~~~~~~~~~~~r~~~~~~~~~~~al~hdl~e~~vg 77 (257)
|||||+||+.|+.. ++.++|+.+|+.|||+||++|+++||+|.
T Consensus 37 s~rVa~~A~~la~~~~~~~~~~d~~~v~~~aLlHD~~E~~~GD~p~---------------------------------- 82 (177)
T 2cqz_A 37 SFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAEAIITDIPL---------------------------------- 82 (177)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHHHCCCCT----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHcCCCcc----------------------------------
Confidence 69999999999976 45799999999999999999999997733
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhCCChHHHHHhhhhhHHHHHHhHHHHHhccCcccccc
Q psy2937 78 DLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFF 157 (257)
Q Consensus 78 Di~~~~~~~~~~k~~~E~~A~~~l~~~Lp~~~~~~~~L~~EYE~~~T~EAK~vke~Dkl~~i~q~l~ye~~g~~~l~eff 157 (257)
.......++..|.+++.++ | .++.++|.+
T Consensus 83 -----~~~~~~~~~~~E~~a~~~~---l----~~i~~l~~e--------------------------------------- 111 (177)
T 2cqz_A 83 -----SAQEFVDKDKAEALVFKKV---F----PEFYELYRE--------------------------------------- 111 (177)
T ss_dssp -----TTTTTSCHHHHHHHHHHHT---C----GGGHHHHHH---------------------------------------
T ss_pred -----ccccHHHHHHHHHHHHHHH---H----HHHHHHHHH---------------------------------------
Confidence 2223344556777776665 2 234444444
Q ss_pred cccccccchhhhHHHHHHHHHhhcCCcchhhhchhhHHHHHHHHHHHHHhhCCCchhhhhhhccccc----ChHHHHHHH
Q psy2937 158 VPERYTFVFPLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFV----FPLTKSMNE 233 (257)
Q Consensus 158 ~s~~~~i~tpevk~l~~eLeyE~~~t~ea~~vkd~DklemilQa~eYe~~~~~~l~ef~~~~~~~~~----t~~~k~~~~ 233 (257)
|+...|+|+++|||+|+|++++||++|...+|..+++||.+.. +++ ||.+|+|++
T Consensus 112 --------------------f~~~~t~Ea~~vk~aDrL~a~l~a~~~~~~~~~~~~~f~~kl~-~l~~~~~t~~~k~~a~ 170 (177)
T 2cqz_A 112 --------------------YQECSSPEAQLVRIADKLDMILQAYQYELSGNKNLDEFWEAIE-EIKRLELSKYLEDILN 170 (177)
T ss_dssp --------------------HHHTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGGGHHH-HHHTSGGGGGGHHHHH
T ss_pred --------------------hhcCCCHHHHHHHHHHHHHHHHHHHHhhhcCCccHHHHHHHHH-HHHhccCCHHHHHHHH
Confidence 4557788888999999999999999999888899999999887 888 999999999
Q ss_pred HHHHhHH
Q psy2937 234 ELVKQRN 240 (257)
Q Consensus 234 ~l~~~r~ 240 (257)
+|+++|+
T Consensus 171 ~i~~~r~ 177 (177)
T 2cqz_A 171 SVGRLKA 177 (177)
T ss_dssp HHHTTC-
T ss_pred HHHHhcC
Confidence 9999884
No 6
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=99.89 E-value=7.7e-24 Score=184.08 Aligned_cols=116 Identities=22% Similarity=0.244 Sum_probs=97.7
Q ss_pred ChHHHHHHHHcc----cccCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHhhhhhhc
Q psy2937 1 MYRMAVMTFLLD----ENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIV 76 (257)
Q Consensus 1 ~~~~a~~~~~l~----~~~~~~~d~~r~~~mal~HDl~E~~~GD~~~~~~~~~~~~~r~~~~~~~~~~~al~hdl~e~~v 76 (257)
||+||+||++++ +.++.++|+.||+.|||+||++|+++||+++
T Consensus 36 S~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~GDi~~--------------------------------- 82 (201)
T 2paq_A 36 SLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPT--------------------------------- 82 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHHCCCCC---------------------------------
T ss_pred HHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccCCCCCc---------------------------------
Confidence 799999999999 6666789999999999999999999999865
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHhhhCCChHHHHHhhhhhHHHHHHhHHHHHhccC
Q psy2937 77 GDLTPYCGVSKEEKHRREDEAMKTLKSLCHT-QGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHI 151 (257)
Q Consensus 77 gDi~~~~~~~~~~k~~~E~~A~~~l~~~Lp~-~~~~~~~L~~EYE~~~T~EAK~vke~Dkl~~i~q~l~ye~~g~~ 151 (257)
++.++++.....+.+.|.+++.++++.||. .++++..+|.||+ ..|+|+++||++|++++++|+++|...|+.
T Consensus 83 -p~k~~~~~~~~~~~~~E~~~~~~i~~~Lp~~~~~e~~~l~~e~e-~~t~ea~lvk~aD~l~a~lqa~e~~~~Gn~ 156 (201)
T 2paq_A 83 -PVKYFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHA-YSDEEKSLVKQADALCAYLKCLEELAAGNN 156 (201)
T ss_dssp -C---------CTHHHHHHHHHHHHHTTSCGGGHHHHHHHHTTTS-CCHHHHHHHHHHHHHHHHHHHHHHHHTTCG
T ss_pred -hHhhhchHHHHHhcccHHHHHHHHHHhCCHHHHHHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence 344455555566778899999999999997 6899999999997 699999999999999999999999988763
No 7
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua}
Probab=99.87 E-value=3.4e-22 Score=175.73 Aligned_cols=115 Identities=20% Similarity=0.231 Sum_probs=94.2
Q ss_pred ChHHHHHHHHccc---ccCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHhhhhhhcC
Q psy2937 1 MYRMAVMTFLLDE---NNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVG 77 (257)
Q Consensus 1 ~~~~a~~~~~l~~---~~~~~~d~~r~~~mal~HDl~E~~~GD~~~~~~~~~~~~~r~~~~~~~~~~~al~hdl~e~~vg 77 (257)
|||||+||++|+. .++.++|++||+.|||+||++|+++|||++
T Consensus 35 S~~vA~iA~~La~~~~~~~~~vD~~r~~~maL~HDl~E~~~GDi~t---------------------------------- 80 (216)
T 3mzo_A 35 SYKVTSIAQFFGAVEEDAGNEVNWRALYEKALNHDYSELFIGDIKT---------------------------------- 80 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTGGGGTSCCCCS----------------------------------
T ss_pred HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHccHHHHHcCCCCc----------------------------------
Confidence 7999999999993 456789999999999999999999998865
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHH-HHhccc-chHHHHHHHHHhhhCCChHHHHHhhhhhHHHHHHhHHHHHhcc
Q psy2937 78 DLTPYCGVSKEEKHRREDEAMKTL-KSLCHT-QGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQH 150 (257)
Q Consensus 78 Di~~~~~~~~~~k~~~E~~A~~~l-~~~Lp~-~~~~~~~L~~EYE~~~T~EAK~vke~Dkl~~i~q~l~ye~~g~ 150 (257)
++.+..+.....++++|.++++++ ++.||. .++.+..+|.|+ .+.|+|+++||++|++++++|+++|...|+
T Consensus 81 Pvk~~~~~~~~~~~~~E~~a~~~li~~~LP~~~~~~~~~~~~e~-~~~t~ea~~vK~aDkl~~~lqa~~~~~~Gn 154 (216)
T 3mzo_A 81 PVKYATTELREMLSEVEESMTKNFISREIPATFQPIYRHLLKEG-KDSTLEGKILAISDKVDLLYESFGEIQKGN 154 (216)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHSCC-CSSSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 222111111233557899999986 489996 577888888884 679999999999999999999999999887
No 8
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=99.47 E-value=8.1e-14 Score=121.64 Aligned_cols=91 Identities=18% Similarity=0.174 Sum_probs=73.1
Q ss_pred ChHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy2937 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLT 80 (257)
Q Consensus 1 ~~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~~GD~~~~~~~~~~~~~r~~~~~~~~~~~al~hdl~e~~vgDi~ 80 (257)
||+||+||++|+ .++| .|++.|||+||++|+++||+++. ++
T Consensus 60 S~~va~ia~~l~----~~~~-~r~~~~aL~HD~~E~~~GDi~tP----------------------------------vK 100 (207)
T 2gz4_A 60 CLIVETIFCRMC----PGAT-PDEMQMALLHDAPEYVIGDMISP----------------------------------FK 100 (207)
T ss_dssp HHHHHHHHHHHC----TTCC-HHHHHHHHTTTTTHHHHCCCCGG----------------------------------GG
T ss_pred HHHHHHHHHHHC----CCCC-HHHHHHHHhcCchHhhccCCChH----------------------------------hh
Confidence 799999999996 2678 58999999999999999999762 22
Q ss_pred CCCCCChHHHHHHHHHHHHHHHH--hcccchHHHHHHHHHhhhCCChHHHHHhhhhhHHHHHHhHHHH
Q psy2937 81 PYCGVSKEEKHRREDEAMKTLKS--LCHTQGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYE 146 (257)
Q Consensus 81 ~~~~~~~~~k~~~E~~A~~~l~~--~Lp~~~~~~~~L~~EYE~~~T~EAK~vke~Dkl~~i~q~l~ye 146 (257)
......+++.|.++++.+.. .||. ...+.|+++||.+|++++++|+.++.
T Consensus 101 ---~~l~~~yk~iE~~~~~~i~~~f~Lp~-------------~~~~~e~~lVK~aDkl~a~lea~~~~ 152 (207)
T 2gz4_A 101 ---SVVGGGYKTVEKRLEAAVHLRFGLPP-------------HASRELKDRIKKADTVAAFFEATELA 152 (207)
T ss_dssp ---GTSCHHHHHHHHHHHHHHHHHTTCCS-------------SCCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred ---hhhhHHHHHHHHHHHHHHHHhcCCCC-------------CCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 22334566889999998887 5663 34567999999999999999999663
No 9
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua}
Probab=99.37 E-value=3.4e-12 Score=111.98 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=30.3
Q ss_pred hhcCCcchhhhchhhHHHHHHHHHHHHHhhCCC
Q psy2937 179 ESQETPEAKFVKELDIVDMLVQAFEYEKAQHID 211 (257)
Q Consensus 179 E~~~t~ea~~vkd~DklemilQa~eYe~~~~~~ 211 (257)
+.+.|+|+++||++|++++++||++|++.||..
T Consensus 124 ~~~~t~ea~~vK~aDkl~~~lqa~~~~~~Gn~e 156 (216)
T 3mzo_A 124 GKDSTLEGKILAISDKVDLLYESFGEIQKGNPE 156 (216)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 457999999999999999999999999999864
No 10
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=99.28 E-value=1.2e-11 Score=107.30 Aligned_cols=69 Identities=23% Similarity=0.277 Sum_probs=58.9
Q ss_pred hhhHHHHHHHHHhhcCCcchhhhchhhHHHHHHHHHHHH----HhhCCCchhhhhhhccccc--ChHHHHHHHHHHHh
Q psy2937 167 PLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYE----KAQHIDLSEFFVPERYTFV--FPLTKSMNEELVKQ 238 (257)
Q Consensus 167 pevk~l~~eLeyE~~~t~ea~~vkd~DklemilQa~eYe----~~~~~~l~ef~~~~~~~~~--t~~~k~~~~~l~~~ 238 (257)
++++++|. +||+++|+|++|||++|||++++||.+|+ ..+++++++|+.. +.+++ .|.+-+|+.++++.
T Consensus 117 ~e~~~Lw~--EyE~~~t~Ea~~vK~~Dkl~~~lqa~~~~g~~w~~~gv~~~q~~~~-~~~i~~~~~~lw~~~~~~~~~ 191 (200)
T 3kh1_A 117 AEYSALWQ--EYEARETADARFADALDRLQPLLHNFETEGGTWKPHGVTRAKVDKL-LPRIEAGSKRLGAYARALVDE 191 (200)
T ss_dssp HHHHHHHH--HHHHTCSHHHHHHHHHHHHHHHHHHHHTTSTTTTTTTCBHHHHHHH-HHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCCccccCccHHHHHHH-hHHHhhcCHHHHHHHHHHHHH
Confidence 56677885 79999999999999999999999999998 4577899999974 55777 88888888887764
No 11
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=99.27 E-value=5.5e-12 Score=109.32 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=50.2
Q ss_pred hhhHHHHHHHHHhhcCCcchhhhchhhHHHHHHHHHHHHHhhCCCchhhhhhhcccc-------cChHHHHHHHHHHH
Q psy2937 167 PLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTF-------VFPLTKSMNEELVK 237 (257)
Q Consensus 167 pevk~l~~eLeyE~~~t~ea~~vkd~DklemilQa~eYe~~~~~~l~ef~~~~~~~~-------~t~~~k~~~~~l~~ 237 (257)
++++.+|. +++ ..|+|+++||++|+|++++||.+|++.||. +|+.+ ..++ ++|.++.|.+.++.
T Consensus 116 ~e~~~l~~--e~e-~~t~ea~lvk~aD~l~a~lqa~e~~~~Gn~---ef~~a-~~~~~~~l~~~~~~~v~~f~~~~~p 186 (201)
T 2paq_A 116 DIFAPLID--EHA-YSDEEKSLVKQADALCAYLKCLEELAAGNN---EFLLA-KTRLEATLEARRSQEMDYFMEIFVP 186 (201)
T ss_dssp HHHHHHHT--TTS-CCHHHHHHHHHHHHHHHHHHHHHHHHTTCG---GGHHH-HHHHHHHHHHTCCHHHHHHHHHHST
T ss_pred HHHHHHHh--ccc-CCCHHHHHHHHHHHHHHHHHHHHHHHcCCh---HHHHH-HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 55666774 465 699999999999999999999999999876 35432 2233 78999999988763
No 12
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=98.91 E-value=1.4e-09 Score=94.61 Aligned_cols=62 Identities=37% Similarity=0.524 Sum_probs=57.2
Q ss_pred CChHHHHHhhhhhHHHHHHhHHHHHhccC--cccccccccccccchhhhHHHHHHHHHhhcCCc
Q psy2937 123 ETPEAKFVKELDIVDMLVQAFEYEKAQHI--DLSEFFVPERYTFVFPLTKSMNEELEYESQETP 184 (257)
Q Consensus 123 ~T~EAK~vke~Dkl~~i~q~l~ye~~g~~--~l~eff~s~~~~i~tpevk~l~~eLeyE~~~t~ 184 (257)
+|+|+++||++|++++++||++|+..|+. ++++||.++.+++.+|.+++|.++|..++...+
T Consensus 132 ~t~Ea~~vK~aDkle~llqa~ey~~~Gn~~~~l~~ff~~~~~~~~~~~~~~~~~~l~~~r~~~~ 195 (204)
T 4dmb_A 132 SSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKFNHPEIVQLVSELEAERSTNI 195 (204)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTTHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999987 799999999999999999999999988886443
No 13
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=98.21 E-value=1.2e-06 Score=74.83 Aligned_cols=58 Identities=31% Similarity=0.398 Sum_probs=52.5
Q ss_pred CChHHHHHhhhhhHHHHHHhHHHHHhccCcccccccccccccc----hhhhHHHHHHHHHhhc
Q psy2937 123 ETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFV----FPLTKSMNEELEYESQ 181 (257)
Q Consensus 123 ~T~EAK~vke~Dkl~~i~q~l~ye~~g~~~l~eff~s~~~~i~----tpevk~l~~eLeyE~~ 181 (257)
.|+|+++||++|++++++|+++|...|+..+++||.+.. ++. +|.+++|.++|..++.
T Consensus 121 ~t~Ea~~vK~aDkl~a~lqa~~~~~~g~~~~~~~~~~~~-~l~~~~~t~~~~~l~~~i~~~r~ 182 (184)
T 1xx7_A 121 LTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALE-DLEKLEISRYLREIIEEVRRLKD 182 (184)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGGGHHH-HHTTSGGGGGCHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHH-HHHhccCCHHHHHHHHHHHHHhh
Confidence 699999999999999999999999999888999999887 999 9999999999877664
No 14
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=97.99 E-value=6.1e-06 Score=69.64 Aligned_cols=58 Identities=24% Similarity=0.388 Sum_probs=52.3
Q ss_pred CCChHHHHHhhhhhHHHHHHhHHHHHhccCcccccccccccccc----hhhhHHHHHHHHHhh
Q psy2937 122 QETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFV----FPLTKSMNEELEYES 180 (257)
Q Consensus 122 ~~T~EAK~vke~Dkl~~i~q~l~ye~~g~~~l~eff~s~~~~i~----tpevk~l~~eLeyE~ 180 (257)
..|+|+++||++|+|+++++|+.|...++..++.||.... ++. ||.++.|.+++..++
T Consensus 115 ~~t~Ea~~vk~aDrL~a~l~a~~~~~~~~~~~~~f~~kl~-~l~~~~~t~~~k~~a~~i~~~r 176 (177)
T 2cqz_A 115 CSSPEAQLVRIADKLDMILQAYQYELSGNKNLDEFWEAIE-EIKRLELSKYLEDILNSVGRLK 176 (177)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGGGHHH-HHHTSGGGGGGHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhcCCccHHHHHHHHH-HHHhccCCHHHHHHHHHHHHhc
Confidence 4699999999999999999999999988888999998887 777 999999999887654
No 15
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=97.81 E-value=1.5e-05 Score=67.55 Aligned_cols=51 Identities=16% Similarity=0.136 Sum_probs=43.7
Q ss_pred HhhhhhHHHHHHhHHHHHhccCcccccccccccccchhhhHHHHHHHHHhhcCC
Q psy2937 130 VKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELEYESQET 183 (257)
Q Consensus 130 vke~Dkl~~i~q~l~ye~~g~~~l~eff~s~~~~i~tpevk~l~~eLeyE~~~t 183 (257)
||++|++++++|+++|+.. |.++++||.++ ++.||.+++|.+++..++...
T Consensus 120 vk~~Dkle~llq~~ey~~~-~~~~~~f~~~~--~~~t~~~~~~~~~i~~~~~~~ 170 (173)
T 1ynb_A 120 VSDADKLELAFQGVEYSQQ-VSYAIRFAENV--ELKTDAAKEIYRVLMERKNPV 170 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTT-CGGGGGGGSSC--CCCSHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHh-cccHHHHHHHh--hccCHHHHHHHHHHHHhhHHh
Confidence 6789999999999999988 77899999888 999999999998887766543
No 16
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=97.61 E-value=8.3e-05 Score=64.63 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=22.0
Q ss_pred hcCCcchhhhchhhHHHHHHHHHHH
Q psy2937 180 SQETPEAKFVKELDIVDMLVQAFEY 204 (257)
Q Consensus 180 ~~~t~ea~~vkd~DklemilQa~eY 204 (257)
...+.|+++||++|++++++||++|
T Consensus 127 ~~~~~e~~lVK~aDkl~a~lea~~~ 151 (207)
T 2gz4_A 127 HASRELKDRIKKADTVAAFFEATEL 151 (207)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3455789999999999999999988
No 17
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=96.85 E-value=0.0045 Score=52.83 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=38.5
Q ss_pred cCCcchhhhchhhHHHH-----HHHHHHHHHhhC-----------CCchhhhh---hhcccccChHHHHHHHHHHHh
Q psy2937 181 QETPEAKFVKELDIVDM-----LVQAFEYEKAQH-----------IDLSEFFV---PERYTFVFPLTKSMNEELVKQ 238 (257)
Q Consensus 181 ~~t~ea~~vkd~Dklem-----ilQa~eYe~~~~-----------~~l~ef~~---~~~~~~~t~~~k~~~~~l~~~ 238 (257)
..|+|+++|.|+|+|+. |..++.|....+ ..++.|+. .....++|+.+|+++++--+.
T Consensus 111 ~~~~ea~iv~dAD~LDalgaigiaR~~~y~g~~~~~~~~~~~~~~~~i~hf~ekl~~l~~~~~T~~gr~~a~~r~~~ 187 (209)
T 3b57_A 111 ALTIEEKIVQDADRLDAIGAIGIARTFTYGGAHNREIANQNNPKNTTLQHFYDKLLLIKDQLNTETAKTIAKEKQKI 187 (209)
T ss_dssp CCCHHHHHHHHHHHHTTSHHHHHHHHHHHHTTTTCCSCCCC-CCSCHHHHHHHTHHHHHHHCCCHHHHHTTHHHHHH
T ss_pred CCCHHHHHHcCHHHHhHHHhHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45778888888888885 456677743221 12455543 235688999999999886443
No 18
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=96.44 E-value=0.024 Score=49.26 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=25.3
Q ss_pred hHHHHHHHHcccccCCCCCHHHHHHHHHHhhhh
Q psy2937 2 YRMAVMTFLLDENNETKLNRTRCMELALLHDMA 34 (257)
Q Consensus 2 ~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~ 34 (257)
.||+-+|..++.. .++|++.+..-||+||++
T Consensus 31 ~rV~~~a~~ia~~--~~~d~~~l~~AalLHDig 61 (223)
T 3dto_A 31 RRVTLMAKAIGEQ--EKVDVFVVQIAALFHDLI 61 (223)
T ss_dssp HHHHHHHHHHHHH--TTCCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHhhcc
Confidence 5777788888775 468999999999999987
No 19
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=95.60 E-value=0.034 Score=48.23 Aligned_cols=32 Identities=38% Similarity=0.360 Sum_probs=24.8
Q ss_pred hHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhh
Q psy2937 2 YRMAVMTFLLDENNETKLNRTRCMELALLHDMAE 35 (257)
Q Consensus 2 ~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E 35 (257)
.||+-+|..++.. .++|++.+..-||+||++-
T Consensus 31 ~rV~~~a~~ia~~--~~~d~~~l~~AAlLHDig~ 62 (223)
T 3djb_A 31 RRVHKMAISLSEQ--EGGNRFIIEMAALLHDVAD 62 (223)
T ss_dssp HHHHHHHHHHHTT--TCSCHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHhhccc
Confidence 4677777777765 4688888888888888873
No 20
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=94.23 E-value=0.3 Score=41.84 Aligned_cols=57 Identities=16% Similarity=0.306 Sum_probs=36.2
Q ss_pred cCCcchhhhchhhHHHH-----HHHHHHHHHhhCC------------------------Cchhhhhh---hcccccChHH
Q psy2937 181 QETPEAKFVKELDIVDM-----LVQAFEYEKAQHI------------------------DLSEFFVP---ERYTFVFPLT 228 (257)
Q Consensus 181 ~~t~ea~~vkd~Dklem-----ilQa~eYe~~~~~------------------------~l~ef~~~---~~~~~~t~~~ 228 (257)
..|+++++|.|+|+|+. |..++.|....+. .++-|+.. ....++|+.+
T Consensus 111 ~~~~e~~Iv~dAD~LDalGaigiaR~~~y~g~~~~~~y~~~~~~~~~~~~~~y~~~~~~~i~hf~ekll~l~~~~~T~~g 190 (225)
T 2qgs_A 111 KLSIDGEIVRDADRLDAIGAIGIARTFQFSGHFGEPMWTETKLSNEELHTSLVEELDNSAIKHFYEKLFKLKDLMHTPTA 190 (225)
T ss_dssp CCCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTCCSCCCCCCCHHHHTSGGGGGSCCCHHHHHHHTGGGSGGGCCSHHH
T ss_pred CCCHHHHHHHhhHHHHHhhhHHHHHHHHHHHhcCCcccCccccCcccccHHHhhcCcchHHHHHHHHHHHHHHHCCCHHH
Confidence 45677788888888763 5566666543221 24445432 3457889999
Q ss_pred HHHHHHHHH
Q psy2937 229 KSMNEELVK 237 (257)
Q Consensus 229 k~~~~~l~~ 237 (257)
|+++++--+
T Consensus 191 r~~ae~r~~ 199 (225)
T 2qgs_A 191 KKLAEERHQ 199 (225)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887544
No 21
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=93.14 E-value=0.42 Score=41.15 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=24.0
Q ss_pred hHHHHHHHHcccccCCCCCHHHHHHHHHHhhhh
Q psy2937 2 YRMAVMTFLLDENNETKLNRTRCMELALLHDMA 34 (257)
Q Consensus 2 ~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~ 34 (257)
.||+-+|..++.. .++|++-+..-||+||++
T Consensus 36 ~rV~~~a~~ia~~--~~~d~~ll~lAAlLHDig 66 (231)
T 2pjq_A 36 QRVNRLARRLAKD--EGANLNLTLAAAWLHDVI 66 (231)
T ss_dssp HHHHHHHHHHHHH--HTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHcCC
Confidence 4677777777765 357888888889999986
No 22
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=92.98 E-value=0.23 Score=42.10 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=22.3
Q ss_pred hHHHHHHHHcccccCCCCCHHHHHHHHHHhhh
Q psy2937 2 YRMAVMTFLLDENNETKLNRTRCMELALLHDM 33 (257)
Q Consensus 2 ~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl 33 (257)
.||+.+|..++.. .+.|++.+..-||+||+
T Consensus 39 ~rV~~~a~~la~~--~~~d~~~l~~AaLLHDI 68 (220)
T 2pq7_A 39 FRVMENASEIASR--EKCDLQKAIIAALLHDI 68 (220)
T ss_dssp HHHHHHHHHHHHH--HTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHcC
Confidence 4677777777765 24688888888888888
No 23
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=89.52 E-value=0.25 Score=43.25 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=25.6
Q ss_pred hHHHHHHHHcccccCCCCCHHHHHHHHHHhhhh
Q psy2937 2 YRMAVMTFLLDENNETKLNRTRCMELALLHDMA 34 (257)
Q Consensus 2 ~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~ 34 (257)
.||+-+|..++.. .+.|++.+...||+||++
T Consensus 31 ~rV~~~a~~ia~~--~~~d~~~~~~AalLHDig 61 (239)
T 3gw7_A 31 RRVWATAQKLAAD--DDVDMLVILTACYFHDIV 61 (239)
T ss_dssp HHHHHHHHHHTTT--SCSCTTHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHhhcc
Confidence 4777788888875 468999999999999995
No 24
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=85.55 E-value=0.33 Score=40.25 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=29.0
Q ss_pred ChHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhh
Q psy2937 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAEC 36 (257)
Q Consensus 1 ~~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~ 36 (257)
|.+||.+|..||.. .++|.+++..-+|+||++-.
T Consensus 23 s~~Va~~A~~lA~~--~g~~~~~~~~agLLHDIGk~ 56 (188)
T 2o08_A 23 TIGVMETAIDLAKL--YGADQQKAELAAIFHDYAKF 56 (188)
T ss_dssp HHHHHHHHHHHHHH--HTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHH--HCcCHHHHHHHHHHHHHcCC
Confidence 35799999999988 46899999999999999853
No 25
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=85.01 E-value=0.36 Score=40.07 Aligned_cols=34 Identities=15% Similarity=0.062 Sum_probs=29.0
Q ss_pred ChHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhh
Q psy2937 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAEC 36 (257)
Q Consensus 1 ~~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~ 36 (257)
|.+||.+|..||.. .++|.+++..-+|+||++-.
T Consensus 24 s~~Va~~A~~lA~~--~g~d~~~~~~AgLLHDiGk~ 57 (190)
T 3ccg_A 24 SLGVMDTAVRLAGI--YNEDTEKARIAGLVHDCAKK 57 (190)
T ss_dssp HHHHHHHHHHHHHH--HTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHH--HCcCHHHHHHHHHHHHhcCC
Confidence 35799999999998 46899999999999999853
No 26
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=84.43 E-value=0.39 Score=40.14 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=29.0
Q ss_pred ChHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhh
Q psy2937 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAEC 36 (257)
Q Consensus 1 ~~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~ 36 (257)
|.+||.+|..||.. .++|.+++..-+|+||++-.
T Consensus 31 s~~Va~~A~~lA~~--~g~d~~~~~~AgLLHDIGK~ 64 (196)
T 2ogi_A 31 VLGVERAAIELAER--YGYDKEKAGLAALLHDYAKE 64 (196)
T ss_dssp HHHHHHHHHHHHHH--HTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHH--HCcCHHHHHHHHHHHHcCCc
Confidence 35799999999988 46899999999999999853
No 27
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=75.75 E-value=2.2 Score=37.12 Aligned_cols=56 Identities=23% Similarity=0.246 Sum_probs=41.4
Q ss_pred cCCcchhhhchhhHHHH-----HHHHHHHHHhhCCC--------------------chhhhh---hhcccccChHHHHHH
Q psy2937 181 QETPEAKFVKELDIVDM-----LVQAFEYEKAQHID--------------------LSEFFV---PERYTFVFPLTKSMN 232 (257)
Q Consensus 181 ~~t~ea~~vkd~Dklem-----ilQa~eYe~~~~~~--------------------l~ef~~---~~~~~~~t~~~k~~~ 232 (257)
..|+|+++|.|+|+|+. |.+++.|--..+.. ++-|+. ...+.++|+.+|++|
T Consensus 115 p~t~Ea~IV~DADrLDalGAiGIaR~f~y~g~~~~~l~~p~~~~~~~r~~~~~~~~i~Hf~eKLl~L~~~m~T~~gr~~A 194 (239)
T 3gw7_A 115 PLTTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDGEDPFAQHRPLDDKRYALDHFQTKLLKLPQTMQTARGKQLA 194 (239)
T ss_dssp CCSHHHHHHHHHTGGGGSHHHHHHHHHHHHHHTTCCCSGGGGGGGTSCCCCC--CHHHHHTTTGGGTTTTCCSHHHHHHH
T ss_pred CCChHHHHHHhHHHHHHhhchhHHHHHHHHHHhCCccCCCcchhhhhhccccchhHHHHHHHHHHhhHhhccCHHHHHHH
Confidence 56889999999999995 89999996543321 223553 234589999999999
Q ss_pred HHHH
Q psy2937 233 EELV 236 (257)
Q Consensus 233 ~~l~ 236 (257)
++=.
T Consensus 195 ~~R~ 198 (239)
T 3gw7_A 195 QHNA 198 (239)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8643
No 28
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=65.65 E-value=3.6 Score=36.39 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=28.7
Q ss_pred hHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhhhc
Q psy2937 2 YRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVG 39 (257)
Q Consensus 2 ~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~~G 39 (257)
.++|.+|..+|...+.. +.+.+...+|+||++...+-
T Consensus 124 ~~va~~a~~la~~~~~~-~~~~~~~agllHDIGkl~l~ 160 (305)
T 3hc1_A 124 LGVARIAKLIAERTGFL-NPVNVYVAGLLHDVGEVFIN 160 (305)
T ss_dssp HHHHHHHHHHHHHTTCS-CHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhhHHHHH
Confidence 57788888888874332 88899999999999876654
No 29
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=61.76 E-value=3.9 Score=35.68 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=28.4
Q ss_pred hHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhhhc
Q psy2937 2 YRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVG 39 (257)
Q Consensus 2 ~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~~G 39 (257)
.++|.+|-.++... ++|.+.+...+|+||++..+.-
T Consensus 111 ~~~a~~a~~la~~~--~~~~~~~~~agLLhdiGkl~l~ 146 (275)
T 3m1t_A 111 FEVAIICQELAKRL--GTLPEEAFTCGILHSIGELLIV 146 (275)
T ss_dssp HHHHHHHHHHHHHH--TSCHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCHHHHHHHHHHHHccHHHHH
Confidence 46788888888774 5789999999999999876653
No 30
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=61.39 E-value=5.4 Score=35.04 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=28.5
Q ss_pred hHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhhhc
Q psy2937 2 YRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVG 39 (257)
Q Consensus 2 ~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~~G 39 (257)
.++|.+|..++...+.. +++.+...+|+||++..+.-
T Consensus 114 ~~~A~~a~~la~~~~~~-~~~~~~~agLLhdiGkl~l~ 150 (288)
T 3ljx_A 114 LARAVALQSITAQASTV-APKEAFTLGLLADVGRLALA 150 (288)
T ss_dssp HHHHHHHHHHHHTSSSS-CHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCC-CHHHHHHHHHHHhccHHHHH
Confidence 46788888888764332 78999999999999977654
No 31
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=51.30 E-value=5.1 Score=36.01 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=21.3
Q ss_pred hHHHHHHHHcccccCCCCCHHH----HHHHHHHhhhhhh
Q psy2937 2 YRMAVMTFLLDENNETKLNRTR----CMELALLHDMAEC 36 (257)
Q Consensus 2 ~~~a~~~~~l~~~~~~~~d~~r----~~~mal~HDl~E~ 36 (257)
.++|++|..|+..+ +++.+. +..-||+||++-.
T Consensus 172 ~~Va~la~~la~~l--gl~~~~~~~~l~~aaLLHDIGk~ 208 (328)
T 3tm8_A 172 VTVSTLSIALAQKL--GITDPKKTQLLTLGALLHDYGHH 208 (328)
T ss_dssp HHHHHHHHHHHHHH--TCCCHHHHHHHHHHHHHTTGGGT
T ss_pred HHHHHHHHHHHHHc--CcCHHHHHHHHHHHHHHhcCCcc
Confidence 47788888888773 455444 3336777777743
No 32
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=49.01 E-value=8.2 Score=33.57 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=26.3
Q ss_pred hHHHHHHHHccccc----C-CCCCHHHHHHHHHHhhhhhhh
Q psy2937 2 YRMAVMTFLLDENN----E-TKLNRTRCMELALLHDMAECI 37 (257)
Q Consensus 2 ~~~a~~~~~l~~~~----~-~~~d~~r~~~mal~HDl~E~~ 37 (257)
.++|.+|..++... + .+.|++.+...+|+||++...
T Consensus 123 ~~vA~~a~~la~~~~~~~~~~~~~~~~~~laGLLHdiGkl~ 163 (281)
T 3i7a_A 123 IDVTAAACSLLQIYNKKHPGSGLNYDTLTLAGLVHNIGALP 163 (281)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHCCHHH
Confidence 35677777777664 1 467888888889999988643
No 33
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=40.34 E-value=16 Score=34.35 Aligned_cols=38 Identities=13% Similarity=0.033 Sum_probs=29.1
Q ss_pred hHHHHHHHHcccccCC--CCCHHHHHHHHHHhhhhhhhhc
Q psy2937 2 YRMAVMTFLLDENNET--KLNRTRCMELALLHDMAECIVG 39 (257)
Q Consensus 2 ~~~a~~~~~l~~~~~~--~~d~~r~~~mal~HDl~E~~~G 39 (257)
.++|.+|..|+...+. ..+.+.+...+|+||++..+.-
T Consensus 284 ~~~A~~a~~LA~~~~~~~~~~~~~aflaGLLhDIGkl~l~ 323 (457)
T 3mem_A 284 IWQAQSAGILASMMPRGQRPLFGLAYLAGLLHNFGHLVLA 323 (457)
T ss_dssp HHHHHHHHHHHHHSCGGGCCCHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHHHHH
Confidence 4577788888876433 3588999999999999977654
No 34
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=40.20 E-value=11 Score=33.06 Aligned_cols=19 Identities=16% Similarity=0.036 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHHhhhhhhh
Q psy2937 19 LNRTRCMELALLHDMAECI 37 (257)
Q Consensus 19 ~d~~r~~~mal~HDl~E~~ 37 (257)
.|.+.+..-+|+||++...
T Consensus 146 ~~~e~a~~aGLLHDIGkl~ 164 (297)
T 1vqr_A 146 KLSHLLVPCAMLLRLGIVI 164 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccHHH
Confidence 4455555555555555443
No 35
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=27.13 E-value=20 Score=33.06 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=23.5
Q ss_pred hHHHHHHHHcccccCCCCCH-HHHHHHHHHhhhhhh
Q psy2937 2 YRMAVMTFLLDENNETKLNR-TRCMELALLHDMAEC 36 (257)
Q Consensus 2 ~~~a~~~~~l~~~~~~~~d~-~r~~~mal~HDl~E~ 36 (257)
.+++-+|..++.. .++|. +.+..-||+||++-.
T Consensus 56 l~V~~~a~~ia~~--~~~~~~~~~~~AaLLHDiG~~ 89 (371)
T 2hek_A 56 LGVYHITERICES--LKVKEKELVKLAGLLHDLGHP 89 (371)
T ss_dssp HHHHHHHHHHHHH--HTCTTHHHHHHHHHTTTTTCC
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcc
Confidence 3577777777776 34565 677778899998743
No 36
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=27.05 E-value=33 Score=31.80 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=24.2
Q ss_pred HHHHHHHHcccccCCCCCHHHHHHHHHHhhhh
Q psy2937 3 RMAVMTFLLDENNETKLNRTRCMELALLHDMA 34 (257)
Q Consensus 3 ~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~ 34 (257)
.||-+|-.++.. .++|.+-+...||+|||+
T Consensus 82 ~Va~iar~ia~~--l~l~~~l~~~a~LlHDiG 111 (376)
T 2dqb_A 82 EVAQVSRSIARA--LGLNEDLTEAIALSHDLG 111 (376)
T ss_dssp HHHHHHHHHHHH--TTCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHH--cCCCHHHHHHHHHHHhcC
Confidence 467778788877 467888888889999998
No 37
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=26.80 E-value=38 Score=31.70 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=25.1
Q ss_pred HHHHHHHHcccccCCCCCHHH--HHHHHHHhhhhhhh
Q psy2937 3 RMAVMTFLLDENNETKLNRTR--CMELALLHDMAECI 37 (257)
Q Consensus 3 ~~a~~~~~l~~~~~~~~d~~r--~~~mal~HDl~E~~ 37 (257)
||+.+|.-++.....+.++++ ++.-||+|||+=++
T Consensus 83 rVa~~A~~l~~~YP~~~~~Er~~l~~aALLHDIGKl~ 119 (393)
T 3kq5_A 83 RGVNSLNHYIQNHPEATPLERYALFSAGLLLEVAHAV 119 (393)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhccchhe
Confidence 577888888887644444554 46669999999775
No 38
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=24.97 E-value=2.7e+02 Score=22.53 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=16.4
Q ss_pred CCChHHHHHhhhhhHHHHHH
Q psy2937 122 QETPEAKFVKELDIVDMLVQ 141 (257)
Q Consensus 122 ~~T~EAK~vke~Dkl~~i~q 141 (257)
..++.+.++|-+|++..|-.
T Consensus 111 ~~d~rvvlIKLADRl~NmR~ 130 (179)
T 3nqw_A 111 KSSCRAKLIKLADKLDNLRD 130 (179)
T ss_dssp TSCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHH
Confidence 36899999999999987643
Done!