RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2937
(257 letters)
>gnl|CDD|221899 pfam13023, HD_3, HD domain. HD domains are metal dependent
phosphohydrolases.
Length = 163
Score = 103 bits (260), Expect = 9e-28
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 41/161 (25%)
Query: 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIK 60
+ +A+M LL E ++ R +++ L+HD+ E GD+ + K+EK RE
Sbjct: 26 SWHVALMALLLAEYAGEGVDIARVIKMLLIHDLVEIDAGDIISPDKLDKKEKEERE---- 81
Query: 61 RCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYE 120
+ AE I G L ED QG+ + L+ E+E
Sbjct: 82 --------REAAERIFGLL-------------PED------------QGEELRALWDEFE 108
Query: 121 SQETPEAKFVKELDIVDMLVQAFEYE----KAQHIDLSEFF 157
+ ETPEA+F K LD ++ ++Q EYE A + LS+ +
Sbjct: 109 AGETPEARFAKALDRLEPILQNLEYEGDSWAAFEVTLSQVY 149
>gnl|CDD|224808 COG1896, COG1896, Predicted hydrolases of HD superfamily [General
function prediction only].
Length = 193
Score = 77.4 bits (191), Expect = 2e-17
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 49 KEEKHRREDLIKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQ 108
E ++ +AL+HD+ E + GD+ ++ ++ E+EA + L
Sbjct: 51 ILNAKGGEVNPEKVALMALVHDLPEALTGDIPTPVKYARAGLYKEEEEAEEAAIHLLFGL 110
Query: 109 GDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKA 148
+ + LF+EYE + + EA+ VK+ D +++L+QA EYE+
Sbjct: 111 PEELLELFREYEKRSSLEARIVKDADKLELLLQALEYEQG 150
>gnl|CDD|216815 pfam01966, HD, HD domain. HD domains are metal dependent
phosphohydrolases.
Length = 111
Score = 33.0 bits (75), Expect = 0.037
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 18/101 (17%)
Query: 51 EKHRREDLIKRCMELALLHDMAECIVGDLTPYCGVS------------KEEKHRREDEAM 98
E+ D + ALLHD+ + GD P +E + E +
Sbjct: 17 EELGELDREL-LLLAALLHDIGKPPFGDEKPLLFEIFLGHAVVGAEILRELEKPLGLEDV 75
Query: 99 KTLKSLCHTQGDRMYTLFQEYESQETPEAKFVKELDIVDML 139
L H + Y + + EA+ VK D +D L
Sbjct: 76 LKLILEHHESWEGAG-----YPEEISLEARIVKLADRLDAL 111
>gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD'
motif.
Length = 145
Score = 28.8 bits (64), Expect = 1.6
Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 23/150 (15%)
Query: 10 LLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLH 69
L +E ++ + ALLHD+ + D E+ H
Sbjct: 17 LAEELGLSEEDIELLRLAALLHDIGKPGTPDAITEEESELEKDH---------------- 60
Query: 70 DMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYESQETPEAKF 129
IVG + EE + DE + + + H + D + + T EA+
Sbjct: 61 ----AIVG-AEILRELLLEEVIKLIDELILAVDASHHERLDGLGYPDGLKGEEITLEARI 115
Query: 130 VKELDIVDMLVQAFEYEKAQ--HIDLSEFF 157
VK D +D L + ++ + DL E
Sbjct: 116 VKLADRLDALRRDSREKRRRIAEEDLEELL 145
>gnl|CDD|107384 cd06389, PBP1_iGluR_AMPA_GluR2, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the GluR2 subunit of the AMPA receptor.
N-terminal leucine/isoleucine/valine-binding protein
(LIVBP)-like domain of the GluR2 subunit of the AMPA
(alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic
acid) receptor. The AMPA receptor is a member of the
glutamate-receptor ion channels (iGluRs) which are the
major mediators of excitatory synaptic transmission in
the central nervous system. AMPA receptors are composed
of four types of subunits (GluR1, GluR2, GluR3, and
GluR4) which combine to form a tetramer and play an
important role in mediating the rapid excitatory
synaptic current. Furthermore, this N-terminal domain of
the iGluRs has homology with LIVBP, a bacterial
periplasmic binding protein, as well as with the
structurally related glutamate-binding domain of the
G-protein-coupled metabotropic receptors (mGluRs).
Length = 370
Score = 28.8 bits (64), Expect = 2.6
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 174 EELEYESQETPEAKFVKEL--DIVDMLVQAFEYEKAQHIDLS 213
EE EY T K+ L D V ++ +AF + Q I++S
Sbjct: 254 EEKEYPGAHTKTIKYTSALTYDAVQVMTEAFRNLRKQRIEIS 295
>gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved
'HD' motif. Includes eukaryotic cyclic nucleotide
phosphodiesterases (PDEc). This profile/HMM does not
detect HD homologues in bacterial glycine aminoacyl-tRNA
synthetases (beta subunit).
Length = 124
Score = 28.0 bits (62), Expect = 2.8
Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 7/89 (7%)
Query: 66 ALLHDMAECIVGDLTPYCGVSKEEKH-------RREDEAMKTLKSLCHTQGDRMYTLFQE 118
ALLHD+ + D E+ H E+E + L
Sbjct: 35 ALLHDIGKPGTPDSFLVKTSVLEDHHFIGAEILLEEEEPRILEEILRTAILSHHERPDGL 94
Query: 119 YESQETPEAKFVKELDIVDMLVQAFEYEK 147
T EA+ VK D +D L Y +
Sbjct: 95 RGEPITLEARIVKVADRLDALRADRRYRR 123
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 29.0 bits (65), Expect = 2.9
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 47 VSKEEKHRREDLIKRCMELALLHDMAECIVGDLTPYCGVSKEEKHR 92
VSKEEK + MEL L ++ + IVG L G+S E++ R
Sbjct: 986 VSKEEKMM---FVDEVMELVELDNLKDAIVG-LPGVTGLSTEQRKR 1027
>gnl|CDD|181180 PRK07952, PRK07952, DNA replication protein DnaC; Validated.
Length = 244
Score = 27.0 bits (60), Expect = 9.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 104 LCHTQGDRMYTLFQEYESQETPEAKFVKELDIVDMLV 140
L T D M + + + ET E + + +L VD+LV
Sbjct: 131 LIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLV 167
>gnl|CDD|235177 PRK03934, PRK03934, phosphatidylserine decarboxylase; Provisional.
Length = 265
Score = 27.2 bits (61), Expect = 9.4
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 11/40 (27%)
Query: 204 YEKAQHIDLSEFFVPERYTFVFPLTKSMNE----ELVKQR 239
Y K ID+SEF PE Y KS+N L K R
Sbjct: 31 YVKIFKIDMSEFKPPENY-------KSLNALFTRSLKKPR 63
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.381
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,941,355
Number of extensions: 1228019
Number of successful extensions: 963
Number of sequences better than 10.0: 1
Number of HSP's gapped: 958
Number of HSP's successfully gapped: 26
Length of query: 257
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 162
Effective length of database: 6,723,972
Effective search space: 1089283464
Effective search space used: 1089283464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.5 bits)