RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2937
(257 letters)
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology,
protein structure initiati northeast structural genomics
consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Length = 204
Score = 95.6 bits (237), Expect = 2e-24
Identities = 58/127 (45%), Positives = 77/127 (60%), Gaps = 3/127 (2%)
Query: 59 IKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLC-HTQGDRMYTLFQ 117
RC+ LAL+HDMAECIVGD+ P + KEEKHRRE+EAMK + L +Y L++
Sbjct: 67 KDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLRKELYELWE 126
Query: 118 EYESQETPEAKFVKELDIVDMLVQAFEYEKAQH--IDLSEFFVPERYTFVFPLTKSMNEE 175
EYE+Q + EAKFVK+LD +M++QA EYE +H L +F+ F P + E
Sbjct: 127 EYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKFNHPEIVQLVSE 186
Query: 176 LEYESQE 182
LE E
Sbjct: 187 LEAERST 193
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics,
joint center for structural genomics, JCSG; HET: MSE;
1.37A {Magnetospirillum magnetotacticum ms-1}
Length = 200
Score = 85.4 bits (211), Expect = 2e-20
Identities = 34/148 (22%), Positives = 51/148 (34%), Gaps = 37/148 (25%)
Query: 1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIK 60
+ +A M FLL E + + R + L+HD+ E GD + E+K RE
Sbjct: 45 SWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVEIDAGDTFIHDEAGNEDKEERERKAA 104
Query: 61 RCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYE 120
+ L Q L+QEYE
Sbjct: 105 ARL-------------------------------------FGLLPPDQAAEYSALWQEYE 127
Query: 121 SQETPEAKFVKELDIVDMLVQAFEYEKA 148
++ET +A+F LD + L+ FE E
Sbjct: 128 ARETADARFADALDRLQPLLHNFETEGG 155
Score = 42.7 bits (100), Expect = 3e-05
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 176 LEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEEL 235
EYE++ET +A+F LD + L+ FE E + + P ++ ++ L
Sbjct: 124 QEYEARETADARFADALDRLQPLLHNFETEGGTWKPHGVTR--AKVDKLLPRIEAGSKRL 181
Query: 236 VKQRNELIRNKTTQNGTIK 254
L+ ++ + G +
Sbjct: 182 GAYARALV-DEAVRRGYLA 199
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative,
southeast collaboratory for structural genomics; 2.26A
{Pyrococcus furiosus} SCOP: a.211.1.1
Length = 184
Score = 82.1 bits (202), Expect = 2e-19
Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 59 IKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQE 118
+++ +++A++HD+ E I+ DL P K E +A+K + LF+E
Sbjct: 65 VEKALKIAIIHDLGEAIITDL-PLSAQKYLNKEEAEAKALKDV-------LPEYTELFEE 116
Query: 119 YESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELEY 178
Y T E + VK D +DM++QA+EYE + +LSEF+ +++ + E +E
Sbjct: 117 YSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALEDLEKLEISRYLREIIEE 176
Query: 179 ESQETPE 185
+ +
Sbjct: 177 VRRLKDD 183
Score = 55.5 bits (133), Expect = 1e-09
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 1/98 (1%)
Query: 148 AQHIDLSEFFVPERYTFVFPLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKA 207
E L + EY T E + VK D +DM++QA+EYE +
Sbjct: 87 LSAQKYLNKEEAEAKALKDVLPEYTELFEEYSKALTLEGQLVKIADKLDMIIQAYEYELS 146
Query: 208 QHIDLSEFFVPERYTFVFPLTKSMNEELVKQRNELIRN 245
+LSEF+ E++++ L +
Sbjct: 147 GAKNLSEFWNALEDLEK-LEISRYLREIIEEVRRLKDD 183
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Length = 177
Score = 80.1 bits (197), Expect = 8e-19
Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 8/119 (6%)
Query: 59 IKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQE 118
+++ +++A++HD+AE I+ D P +K + E K + Y L++E
Sbjct: 60 VEKALKMAIVHDLAEAIITD-IPLSAQEFVDKDKAEALVFKKVF-------PEFYELYRE 111
Query: 119 YESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELE 177
Y+ +PEA+ V+ D +DM++QA++YE + + +L EF+ L+K + + L
Sbjct: 112 YQECSSPEAQLVRIADKLDMILQAYQYELSGNKNLDEFWEAIEEIKRLELSKYLEDILN 170
Score = 53.2 bits (127), Expect = 5e-09
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 177 EYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELV 236
EY+ +PEA+ V+ D +DM++QA++YE + + +L EF+ L+K + E+++
Sbjct: 111 EYQECSSPEAQLVRIADKLDMILQAYQYELSGNKNLDEFWEAIEEIKRLELSKYL-EDIL 169
Query: 237 KQRNEL 242
L
Sbjct: 170 NSVGRL 175
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics,
PSI, protein structure initiative, MID center for
structural genomics, MCSG; 2.10A {Escherichia coli}
SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Length = 201
Score = 74.7 bits (183), Expect = 2e-16
Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 8/134 (5%)
Query: 49 KEEKHRREDLIKRCMELALLHDMAECIVGDLTP----YCGVSKEEKHRREDEAMKTLKSL 104
K K +R LA+ HD +E + GDL + +E E A + L +
Sbjct: 50 KNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLVDM 109
Query: 105 CHTQGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTF 164
+ ++ + + E VK+ D + ++ E A + +
Sbjct: 110 VPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYLKCLEELAAGNNEFLLAKT----RL 165
Query: 165 VFPLTKSMNEELEY 178
L ++E++Y
Sbjct: 166 EATLEARRSQEMDY 179
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein
structure initiative, MIDW center for structural
genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP:
a.211.1.1 PDB: 1yoy_A
Length = 173
Score = 64.8 bits (157), Expect = 4e-13
Identities = 19/133 (14%), Positives = 34/133 (25%), Gaps = 18/133 (13%)
Query: 50 EEKHRREDLIKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQG 109
+ + + AL HD+ E DL + S
Sbjct: 55 LKSGESVEKACKAATAALFHDLHEARTMDLHKIA---------------RRYVSCDEEGA 99
Query: 110 DRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLT 169
+ E + + +V + D +++ Q EY + Q F E
Sbjct: 100 REEQLSWMESKPDFSDVEVYVSDADKLELAFQGVEYSQ-QVSYAIRFA--ENVELKTDAA 156
Query: 170 KSMNEELEYESQE 182
K + L
Sbjct: 157 KEIYRVLMERKNP 169
Score = 48.3 bits (114), Expect = 3e-07
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 176 LEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEEL 235
+E + + +V + D +++ Q EY + Q F E K + L
Sbjct: 107 MESKPDFSDVEVYVSDADKLELAFQGVEYSQ-QVSYAIRFA--ENVELKTDAAKEIYRVL 163
Query: 236 VKQRNEL 242
++++N +
Sbjct: 164 MERKNPV 170
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics,
joint cente structural genomics, JCSG, protein structure
initiative; HET: MSE; 1.98A {Listeria innocua}
Length = 216
Score = 50.9 bits (121), Expect = 5e-08
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 59 IKRCMELALLHDMAECIVGDLTPYC-----GVSKEEKHRREDEAMKTLKSLCHTQGDRMY 113
+ E AL HD +E +GD+ + + E + +Y
Sbjct: 58 WRALYEKALNHDYSELFIGDIKTPVKYATTELREMLSEVEESMTKNFISREIPATFQPIY 117
Query: 114 TLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKA 148
+ T E K + D VD+L ++F +
Sbjct: 118 RHLLKEGKDSTLEGKILAISDKVDLLYESFGEIQK 152
Score = 32.0 bits (72), Expect = 0.12
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 144 EYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFE 203
E E++ + +P L+ T E K + D VD+L ++F
Sbjct: 95 EVEESMTKNFISREIPA------TFQPIYRHLLKEGKDSTLEGKILAISDKVDLLYESFG 148
Query: 204 YEKA 207
+
Sbjct: 149 EIQK 152
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 6e-06
Identities = 37/288 (12%), Positives = 85/288 (29%), Gaps = 75/288 (26%)
Query: 6 VMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHR--REDLIK-RC 62
+M+ + E + + +E D Y VS+ + + R+ L++ R
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQ---RDRLYNDNQVFAKY-NVSRLQPYLKLRQALLELRP 149
Query: 63 MELALLHDMA----ECIVGDLTPYCGVSKEEKH-------------RREDEAMKTLKSLC 105
+ L+ + + D+ C K + + ++ L+ L
Sbjct: 150 AKNVLIDGVLGSGKTWVALDV---CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 106 H-------TQGDRMYTLFQEYESQET------PEAKFVKELDIVD-----MLVQAFEYE- 146
+ ++ D + S + + L ++ AF
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 147 K----AQHIDLSEFFVPERYTFVFPLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAF 202
K + +++F T + S++ + + ++ +K LD
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHI-----SLDHHSMTLTPDEVKSLLLKYLDC-------- 313
Query: 203 EYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELVKQRNELIRNKTTQN 250
+ Q DL P P S+ E + R+ L ++
Sbjct: 314 ---RPQ--DL-----PREVLTTNPRRLSIIAESI--RDGLATWDNWKH 349
Score = 46.0 bits (108), Expect = 7e-06
Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 22/137 (16%)
Query: 126 EAKFVKELD---IVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELEYESQE 182
E FV D + DM E+ HI + +F S EE+
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHI-IMSKDAVSGTLRLFWTLLSKQEEMVQ---- 80
Query: 183 TPEAKFVKELDIVD--MLVQAFEYEKAQHIDLSEFFVPER---YTFVFPLTKSMN---EE 234
KFV+E+ ++ L+ + E+ Q ++ ++ +R Y K N +
Sbjct: 81 ----KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQ 135
Query: 235 LVKQ-RNELIRNKTTQN 250
+ R L+ + +N
Sbjct: 136 PYLKLRQALLELRPAKN 152
Score = 36.0 bits (82), Expect = 0.011
Identities = 33/265 (12%), Positives = 62/265 (23%), Gaps = 70/265 (26%)
Query: 19 LNRTRCME----LALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAEC 74
LN C L +L + I + T S K R + L C
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 75 -IVGD-------------------LTPYCGV-----SKEEKHRREDEAMKTLKSLCHTQG 109
+V T + V + H D TL +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT---PDEV 303
Query: 110 DRMYTLFQEYESQETP-EAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPL 168
+ + + Q+ P E + + + + ++ L
Sbjct: 304 KSLLLKYLDCRPQDLPREVL-----TTNPRRLSIIAESIRDGLATWDNW---KHVNCDKL 355
Query: 169 TKSMNEELEYESQETPEAK--------FVKELDI----VDMLVQAFEYEKAQHIDLSEFF 216
T + E E E + F I + ++ + +++
Sbjct: 356 TTII--ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-VNKLH 412
Query: 217 VPERYTFVFPLTKSMNEELVKQRNE 241
S+ + KQ E
Sbjct: 413 -----------KYSL---VEKQPKE 423
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 6e-05
Identities = 28/184 (15%), Positives = 65/184 (35%), Gaps = 68/184 (36%)
Query: 47 VSKEEKHRREDLIKRCM---ELALL-----HDMAECIVGD-----------LTPY---CG 84
V + + + ++ C+ E L H +A ++ + + Y
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARI 131
Query: 85 VSKEEKHRREDEAMKTLKSLCHTQGD-RMYTLF--Q----EYESQETPEAKFVKELDIVD 137
++K ++ + A+ +++ +G+ ++ +F Q +Y
Sbjct: 132 MAKRPFDKKSNSAL--FRAV--GEGNAQLVAIFGGQGNTDDY------------------ 169
Query: 138 MLVQAFEYEKAQHIDLSEFFVPERY-TFVFPLTKSMNEELEYESQETPEAK--FVKELDI 194
FE +L + + + Y V L K E L + T +A+ F + L+I
Sbjct: 170 -----FE-------ELRDLY--QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 195 VDML 198
++ L
Sbjct: 216 LEWL 219
Score = 35.4 bits (81), Expect = 0.016
Identities = 37/200 (18%), Positives = 59/200 (29%), Gaps = 90/200 (45%)
Query: 108 QGDRMYTLFQE-------YESQETPEAK--------FVKE------LDIVD----MLVQA 142
QG QE Y++ + A+ K+ LDIV L
Sbjct: 1624 QGS------QEQGMGMDLYKT--SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH 1675
Query: 143 FEYEKAQHIDLSEFFVPERYT-FVF-----------PLTKSMNEELEYESQETPEAKFVK 190
F EK + I E Y+ +F + K +NE + + +
Sbjct: 1676 FGGEKGKRIR-------ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG---- 1724
Query: 191 ELD--------IVDMLVQAFEYEKAQHIDL-SEFFVPERYTF----------------VF 225
L + L+ EKA DL S+ +P TF V
Sbjct: 1725 LLSATQFTQPAL--TLM-----EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 226 PLTKSMNEELVKQRNELIRN 245
+ + E+V R ++
Sbjct: 1778 SIESLV--EVVFYRGMTMQV 1795
Score = 33.1 bits (75), Expect = 0.094
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 176 LEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEEL 235
L Y S +K + ++++ + FE + D+ + L + + L
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--------HALAAKLLQENDTTL 116
Query: 236 VKQRNELIRN 245
VK ELI+N
Sbjct: 117 VK-TKELIKN 125
Score = 33.1 bits (75), Expect = 0.096
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 12/48 (25%)
Query: 191 ELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELVKQ 238
+L +D + + K Q ID+ E L KS++ E V+
Sbjct: 1858 DLRALDTVTNVLNFIKLQKIDIIE------------LQKSLSLEEVEG 1893
Score = 31.6 bits (71), Expect = 0.30
Identities = 38/215 (17%), Positives = 65/215 (30%), Gaps = 85/215 (39%)
Query: 8 TFLLDENNETKLNRTR-------CMELALLHDM-AECIVGDLTPYCGVSKEEKHRREDLI 59
TF + + L+ T+ ME A D+ ++ ++ + G S
Sbjct: 1718 TF---RSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS----------- 1763
Query: 60 KRCMEL----AL--------LHDMAECIV---GDLTPYCGVSKEEKHRREDEAMKTLKSL 104
L AL + + E +V G V ++E R + M
Sbjct: 1764 -----LGEYAALASLADVMSIESLVE-VVFYRGMTMQVA-VPRDE-LGRSNYGM------ 1809
Query: 105 CHTQGDRMYTLFQEYESQETPEA------KFVK---------------ELDIVDMLVQAF 143
R+ F + Q E V+ +L +D +
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL 1869
Query: 144 EYEKAQHIDLSEFFVPERYTFVFPLTKSMN-EELE 177
+ K Q ID+ E L KS++ EE+E
Sbjct: 1870 NFIKLQKIDIIE------------LQKSLSLEEVE 1892
Score = 29.2 bits (65), Expect = 1.6
Identities = 37/279 (13%), Positives = 73/279 (26%), Gaps = 107/279 (38%)
Query: 27 LALLHDMAECIVGDLTP------YCGVSKEEKHRREDLIKRCMELALLHDMAECI-VGDL 79
+ L H + + TP G + + L+ A I D
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATG----HSQGLV-----------TAVAIAETD- 287
Query: 80 TPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYESQETPEAKFVKELDIVD-- 137
S E +A+ L + G R E + ++ D ++
Sbjct: 288 ------SWESFFVSVRKAITVLFFI----GVR----CYEAYPNTSLPPSILE--DSLENN 331
Query: 138 ------ML-VQAFEYEKAQ-HIDLSEFFVPE-----------RYTFV---FPLT-KSMNE 174
ML + E+ Q +++ + +P V P + +N
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 175 ELEYE-------------SQETPEAKFVKE-LDI------------VDMLVQAFEYEKAQ 208
L S+ KF L + D++ +
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKL--KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 209 HIDLSEFFVPERYTFVF---------PLTKSMNEELVKQ 238
+ + +P V+ L+ S++E +V
Sbjct: 450 -FNAKDIQIP-----VYDTFDGSDLRVLSGSISERIVDC 482
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.40
Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 36/111 (32%)
Query: 85 VSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFE 144
+++ ++ +E E+++ + E Q K ++ELD +++
Sbjct: 74 IAQADRLTQEPESIRKWR-----------------EEQR----KRLQELDAASKVMEQEW 112
Query: 145 YEKAQHIDLSEFFVPERYTFVFPLTKSMNEELE--YESQETPEAKFVKELD 193
EKA+ DL E+ +R +E++E + + F ++ D
Sbjct: 113 REKAKK-DLEEWN--QRQ----------SEQVEKNKINNRIADKAFYQQPD 150
Score = 26.3 bits (57), Expect = 9.9
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 16/76 (21%)
Query: 179 ESQETPEA---------KFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTK 229
+ PE+ K ++ELD +++ EKA+ DL E+ +R + K
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK-DLEEWN--QRQSEQVEKNK 135
Query: 230 SMN----EELVKQRNE 241
N + +Q +
Sbjct: 136 INNRIADKAFYQQPDA 151
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella
pneumoniae} PDB: 2wni_A 2wu0_A
Length = 418
Score = 28.7 bits (63), Expect = 2.0
Identities = 19/185 (10%), Positives = 58/185 (31%), Gaps = 3/185 (1%)
Query: 34 AECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRR 93
A+ +V P CGV+ + D + + + A + + G + +
Sbjct: 105 AQALVDGAFPGCGVAIHYANGDADPLFQTDKFAATQTDPARQLAAVKEKAGDLAQRRQAL 164
Query: 94 EDEAMKTLKSLCHTQGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDL 153
+++C Q + L ++ +V+ ++++ L
Sbjct: 165 APTIQLLKQAVCQADKPCPIFDTPWRVEQSKSGKTTISGLSVMANMVETLRLGWSENLPL 224
Query: 154 SEFFVPERYTF--VFPLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHID 211
S+ + + L + E + S + + +++ ++ + E + ++
Sbjct: 225 SQLAWGKIAQASQITALLPLLTENYDL-SNDVLYTAQKRGSVLLNAMLDGVKPEASPNVR 283
Query: 212 LSEFF 216
Sbjct: 284 WLLLV 288
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein
structure initiative; 1.50A {Agrobacterium tumefaciens}
SCOP: a.211.1.1
Length = 207
Score = 26.3 bits (57), Expect = 8.9
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 47 VSKEEKHRREDLIKRCMELALLHDMAECIVGDLTP 81
V M++ALLHD E ++GD+
Sbjct: 63 VETIFCRMCPGATPDEMQMALLHDAPEYVIGDMIS 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.381
Gapped
Lambda K H
0.267 0.0414 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,847,421
Number of extensions: 226127
Number of successful extensions: 535
Number of sequences better than 10.0: 1
Number of HSP's gapped: 516
Number of HSP's successfully gapped: 72
Length of query: 257
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 165
Effective length of database: 4,133,061
Effective search space: 681955065
Effective search space used: 681955065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)