RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2937
         (257 letters)



>d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 172

 Score = 77.0 bits (189), Expect = 5e-18
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 8/119 (6%)

Query: 59  IKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQE 118
           +++ +++A++HD+ E I+ DL P        K   E +A+K +             LF+E
Sbjct: 57  VEKALKIAIIHDLGEAIITDL-PLSAQKYLNKEEAEAKALKDV-------LPEYTELFEE 108

Query: 119 YESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELE 177
           Y    T E + VK  D +DM++QA+EYE +   +LSEF+          +++ + E +E
Sbjct: 109 YSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALEDLEKLEISRYLREIIE 167



 Score = 51.9 bits (124), Expect = 5e-09
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 177 EYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELV 236
           EY    T E + VK  D +DM++QA+EYE +   +LSEF+          +++ +  E++
Sbjct: 108 EYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALEDLEKLEISRYL-REII 166

Query: 237 KQRNEL 242
           ++   L
Sbjct: 167 EEVRRL 172


>d2paqa1 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escherichia coli
           [TaxId: 562]}
          Length = 186

 Score = 73.2 bits (179), Expect = 2e-16
 Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 4/116 (3%)

Query: 37  IVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLTP----YCGVSKEEKHR 92
            V  +       K  K       +R   LA+ HD +E + GDL      +     +E   
Sbjct: 35  QVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKA 94

Query: 93  REDEAMKTLKSLCHTQGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKA 148
            E  A + L  +   +   ++    +  +    E   VK+ D +   ++  E   A
Sbjct: 95  IEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYLKCLEELAA 150


>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 167

 Score = 70.0 bits (171), Expect = 2e-15
 Identities = 23/183 (12%), Positives = 48/183 (26%), Gaps = 57/183 (31%)

Query: 1   MYRMAVMTFLL-DENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLI 59
            +R A++ F+L  ++ E+     +    AL HD+ E    DL                  
Sbjct: 37  NFRAAIIAFILALKSGESVEKACKAATAALFHDLHEARTMDLHK---------------- 80

Query: 60  KRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEY 119
                                    +++      E+ A +                + E 
Sbjct: 81  -------------------------IARRYVSCDEEGARE------------EQLSWMES 103

Query: 120 ESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELEYE 179
           +   +    +V + D +++  Q  EY +     +      E         K +   L   
Sbjct: 104 KPDFSDVEVYVSDADKLELAFQGVEYSQQVSYAIRFA---ENVELKTDAAKEIYRVLMER 160

Query: 180 SQE 182
              
Sbjct: 161 KNP 163



 Score = 48.9 bits (116), Expect = 5e-08
 Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 176 LEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEEL 235
           +E +   +    +V + D +++  Q  EY +     +      E         K +   L
Sbjct: 101 MESKPDFSDVEVYVSDADKLELAFQGVEYSQQVSYAIRFA---ENVELKTDAAKEIYRVL 157

Query: 236 VKQRNEL 242
           ++++N +
Sbjct: 158 MERKNPV 164


>d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 200

 Score = 27.2 bits (60), Expect = 1.7
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 47 VSKEEKHRREDLIKRCMELALLHDMAECIVGDL 79
          V               M++ALLHD  E ++GD+
Sbjct: 58 VETIFCRMCPGATPDEMQMALLHDAPEYVIGDM 90



 Score = 25.6 bits (56), Expect = 5.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 23 RCMELALLHDMAECIVGDL 41
            M++ALLHD  E ++GD+
Sbjct: 72 DEMQMALLHDAPEYVIGDM 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0540    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 935,413
Number of extensions: 43163
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 12
Length of query: 257
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,268,006
Effective search space: 220633044
Effective search space used: 220633044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)