BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2938
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN MDD G T L+ A+ G E+VE L + GADVN
Sbjct: 17 KLLEATRAGQDDE-VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G+T L+ A+ G E+VE L E GADVN
Sbjct: 62 IVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN MDD G T L+ A+ G E+VE L + GADVN
Sbjct: 17 KLLEATRAGQDDE-VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G+T L+ A+ G E+VE L E GADVN
Sbjct: 62 IVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN MDD G T L+ A+ G E+VE L + GADVN
Sbjct: 17 KLLEATRAGQDDE-VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G+T L+ A+ G E+VE L E GADVN
Sbjct: 62 IVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN D VG T L+ A+ FG E+VE L + GADVN
Sbjct: 17 KLLEAARAGQDDE-VRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D +G T L+ A+ G E+VE L + GADVN
Sbjct: 62 IVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 95 VVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+LIE + + D + + I++G +VN D G+T L++A+ G +E+V+ L +GADVN
Sbjct: 7 RLIEAAENGNKDRVKDLIENG-ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+++ + S G +VN D G+T L++A+ G +E+V+ L +GADVN
Sbjct: 52 IVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 97
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+++ + S G +VN D G+T L++A+ G +E+V+ L +GADVN
Sbjct: 85 IVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 106
+++ + S G +VN D G+T L+ A G +E+V+ L ++G
Sbjct: 118 IVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN DD G T L+ A+ G E+VE L + GADVN
Sbjct: 17 KLLEAARAGQDDE-VRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 95 IVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 62 IVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN 107
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN +D +G+T L+ + +G E+VE L + GADVN
Sbjct: 62 IVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN D VG T L+ A+ E+VE L + GADVN
Sbjct: 17 KLLEAARAGQDDE-VRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN 74
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D +G T L+ A+ FG E+VE L + GADVN
Sbjct: 62 IVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN D VG T L+ A+ +G E+VE L + GADVN
Sbjct: 17 KLLEAARAGRDDE-VRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN 74
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN DD G T L+ A+ G E+VE L + GADVN
Sbjct: 95 IVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D+ G T L+ A+ FG E+VE L + GADVN
Sbjct: 62 IVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVN 107
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN D G T L+ A+ + E+VE L + GADVN
Sbjct: 17 KLLEAARAGQDDE-VRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN +D G T L A+ FG E+VE L + GADVN
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G T L+ A+ FG E+VE L + GADVN
Sbjct: 95 IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 17 KLLEAARAGRDDE-VRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN DD G+T L+ A+ G E+VE L + GADVN
Sbjct: 17 KLLEAARAGQDDE-VRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D +G T L+ A+ +G E+VE L + GADVN
Sbjct: 62 IVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVN 107
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 95 IVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+LIE + + D + + I++G +VN D G+T L+ A+ G +E+V+ L +GADVN
Sbjct: 7 RLIEAAENGNKDRVKDLIENG-ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN 64
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+++ + S G +VN D G+T L+ A+ G +E+V+ L +GADVN
Sbjct: 52 VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 97
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+++ + S G +VN D G+T L+ A+ G +E+V+ L +GADVN
Sbjct: 85 VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 106
+++ + S G +VN D G+T L+ A G +E+V+ L ++G
Sbjct: 118 VVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D+ G T L+ A+ +G E+VE L + GADVN
Sbjct: 95 IVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+L+E R+ D + + + G +VN D+ G T L+ A++ G E+VE L + GADVN
Sbjct: 17 KLLEAARAGQDDE-VRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA 75
Query: 111 GKL 113
L
Sbjct: 76 SDL 78
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G T L+ A+A G E+VE L + GADVN
Sbjct: 62 IVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVN 107
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN MD G T L+ A+ +G E+VE L + GADVN
Sbjct: 95 IVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN D+ G T L+ A+ G E+VE L + GADV+
Sbjct: 17 KLLEAARAGQDDE-VRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN D G T L+ A+ FG E+VE L + GADVN
Sbjct: 17 KLLEAARAGQDDE-VRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN 74
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D +G T L+ A+ G E+VE L + GADVN
Sbjct: 62 IVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 95 IVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN D G T L+ A+ +G E+VE L + GADVN
Sbjct: 17 KLLEAARAGQDDE-VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN +D G T L+ A+ G E+VE L + GADVN
Sbjct: 62 IVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN +D G T L+ A+ G E+VE L + GADVN
Sbjct: 95 IVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 27/48 (56%)
Query: 60 DTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
+ D L E + G VN D+ G T L WASAFG E V FL E GAD
Sbjct: 14 ELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 28/50 (56%)
Query: 60 DTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ D L E + G VN D+ G T L WASAFG E V FL E GAD +
Sbjct: 14 ELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN D G T L+ A+ +G E+VE L + GADVN
Sbjct: 17 KLLEAARAGQDDE-VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN +D +G T L+ A+ G E+VE L + GADVN
Sbjct: 62 IVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN +D G T L+ A+ G E+VE L + GADVN
Sbjct: 95 IVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G + N D G+T L+ A+A G E+VE L GADVN
Sbjct: 5 KLLEAARAGQDDE-VRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN 62
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN +D G T L+ A++ G E+VE L + GADVN
Sbjct: 50 IVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN 95
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G T L A+ +G E+VE L + GADVN
Sbjct: 83 IVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN 128
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN D+ G T L A+A G E+VE L + GADVN
Sbjct: 17 KLLEAARAGQDDE-VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN +D +G T L+ A+ G E+ E L + GADVN
Sbjct: 62 IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN 107
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN +D+ G T L+ A+ G E+VE L + GADVN
Sbjct: 17 KLLEAARAGQDDE-VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D+ G T L+ A+ G E+VE L + GADVN
Sbjct: 62 IVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVN 107
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 63 ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGKL 113
+ E + S G VN D G+T L W+ FG EM FL E GA+VN L
Sbjct: 82 GIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL 132
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
G VN + G+T L AS +G E+V+ L E GAD++
Sbjct: 124 GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS 161
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D + T L+WA+ QE+VE L + GADV+
Sbjct: 82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 17 KLLEAARAGQDDE-VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN + G+T L+ A+ E+VE L + GADVN
Sbjct: 62 IVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVN 107
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN +D+ G T L+ A+ G E+VE L + GADV+
Sbjct: 17 KLLEAARAGQDDE-VRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 95 IVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ G +VN DD G T L+ A+A G E+VE L + GADVN
Sbjct: 27 ANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN 66
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 87 IVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 54 IVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVN 99
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN D +G T L+ A+ G E+VE L + GADVN
Sbjct: 17 KLLEAARAGQDDE-VRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D+ G T L+ A+ G E+VE L + GADVN
Sbjct: 62 IVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVN 107
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 95 IVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 17 KLLEAARAGQDDE-VRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN 74
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN +D G T L+ A+ G E+VE L + GADVN
Sbjct: 62 IVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVN 107
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D +G T L+ A+ G E+VE L + GADVN
Sbjct: 95 IVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+LIE + + D + + +++G + N D G+T L++A+ G +E+V+ L +GAD N
Sbjct: 7 RLIEAAENGNKDRVKDLLENG-ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+++ + S G + N D G+T L++A+ G +E+V+ L +GAD N
Sbjct: 52 IVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 97
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+++ + S G + N D G+T L++A+ G +E+V+ L +GAD N
Sbjct: 85 IVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+LIE + + D + + +++G +VN D G+T L+ A+ G +E+V+ L +GAD N
Sbjct: 7 RLIEAAENGNKDRVKDLLENG-ADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
S G + N D G+T L+ A+ G +E+V+ L +GAD N
Sbjct: 58 SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 97
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
S G + N D G+T L+ A+ G +E+V+ L +GAD N
Sbjct: 91 SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 5 KLLEAARAGQDDE-VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 50 IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 83 IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 5 KLLEAARAGQDDE-VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 50 IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 83 IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+++ + G +VN D G+T L+ A+ G E+V+ L E GADVN
Sbjct: 17 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+++ + G +VN D G+T L+ A+ G E+V+ L E GADVN
Sbjct: 50 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 95
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 106
+++ + G +VN D G+T L+ A+ G E+V+ L E GA
Sbjct: 83 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGADVN 109
G+T L+ A+ G E+V+ L E GADVN
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVN 29
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 17 KLLEAARAGQDDE-VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 62 IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 107
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 95 IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+++ + G +VN D G+T L+ A+ G E+V+ L E GADVN
Sbjct: 17 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 106
+++ + G +VN D G+T L+ A+ G E+V+ L E GA
Sbjct: 50 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGADVN 109
G+T L+ A+ G E+V+ L E GADVN
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVN 29
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + G +VN MD G T L+ A+ G E+VE L + GADVN
Sbjct: 95 IVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+IE + +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 62 IIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN D G T L+ G E++E L + ADVN
Sbjct: 17 KLLEAARAGQDDE-VRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 5 KLLEAARAGQDDE-VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ +G ++VN DD G T + WA+ + ++V+ L +G+D+N
Sbjct: 97 LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN 138
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
L++ + S G ++N D+ L+WA+ G ++ E L D++
Sbjct: 126 LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH 171
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 75 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
+N D+ G T L WA+A G +VEFL + GAD
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 75 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
+N D+ G T L WA+A G +VEFL + GAD
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 77
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 75 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
+N D+ G T L WA+A G +VEFL + GAD
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 59
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+L+E R+ D + + + G +V D G T L+ A+ G E+V+ L E GADVN
Sbjct: 9 KLLEAARAGQDDE-VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 52 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQ-TLLNWASAFGTQEMVEFLCERGAD 107
LI+ ++++D D L++ + GG VNF ++ G T L+ A +++VE L GAD
Sbjct: 29 LIKAVQNEDVD-LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 84
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 52 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 111
LI + K + ++ +E+N D G+T L A +++ E LC+RGA + G
Sbjct: 243 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 302
Query: 112 KL 113
L
Sbjct: 303 DL 304
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
L++ S G +VN D G T A+ +G + ++FL +RGA+VN
Sbjct: 107 LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 152
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 52 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
L+E +DT + E + +V+ +D G T LN A E+ + L +RGAD+N
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 65 IETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++ + S G +VN G T L+ A+ G E+V+ L +GADVN
Sbjct: 25 VKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+++ + + G +VN G T + A G E+V+ L +GADVN
Sbjct: 57 IVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 52 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQ-TLLNWASAFGTQEMVEFLCERGAD 107
LI+ ++++D D L++ + GG VNF ++ G T L+ A +++VE L GAD
Sbjct: 9 LIKAVQNEDVD-LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 52 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 111
LI + K + ++ +E+N D G+T L A +++ E LC+RGA + G
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282
Query: 112 KL 113
L
Sbjct: 283 DL 284
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
L++ S G +VN D G T A+ +G + ++FL +RGA+VN
Sbjct: 87 LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + GV VN DD G + L+ A++ G E+V+ L +GA VN
Sbjct: 55 IVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 47 SNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 106
SNI+ + S D L E I + D +T L+WA + G E+VEFL + G
Sbjct: 6 SNIM-ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64
Query: 107 DVN 109
VN
Sbjct: 65 PVN 67
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + GV VN DD G + L+ A++ G E+V+ L +GA VN
Sbjct: 55 IVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN 100
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 79 DDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
D +T L+WA + G E+VEFL + G VN
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 58 SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
S D +++ + G +VN ++ G T L++A++ E+ L E GA+
Sbjct: 82 SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + GV VN DD G + L+ A++ G E+V+ L +GA VN
Sbjct: 56 IVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN 101
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 79 DDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
D +T L+WA + G E+VEFL + G VN
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVN 68
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 58 SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
S D +++ + G +VN ++ G T L++A++ E+ L E GA+
Sbjct: 83 SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 132
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++E + GV VN DD G + L+ A++ G E+V+ L +GA VN
Sbjct: 55 IVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVN 100
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 47 SNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 106
SNI+ + S D L E I + D +T L+WA + G E+VEFL + G
Sbjct: 6 SNIM-ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64
Query: 107 DVN 109
VN
Sbjct: 65 PVN 67
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV 108
+L+E R+ D + + + G +V D G T L+ A+ G E+V+ L E GADV
Sbjct: 27 KLLEAARAGQDDE-VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ + +++ D D + + + + G +VN + G+ L++A+ G E++EFL +GAD+N
Sbjct: 10 EFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 56 IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+++ D D + + + + G +VN + G+ L++A+ G E++EFL +GAD+N
Sbjct: 10 LKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGKL 113
GV V+ +G T L+ AS +G ++V+FL + ADVN K KL
Sbjct: 301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL 343
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 58 SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
S DT+ ++ ++ G ++N+ + G T L+ A +MV+FL E GA++N+
Sbjct: 50 SGDTEEVLRLLERGA-DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ 101
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
++E + + ++N D+ G+T L+WA+A E V L A+
Sbjct: 133 MVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN 176
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+D+ ++N DD G + L+WA G +VE L RGA +N
Sbjct: 20 LDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 61
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+D+ ++N DD G + L+WA G +VE L RGA +N
Sbjct: 25 LDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 55 CIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
C+R AL+++ G +++ + G T L+ A QE V+ L ERGAD++
Sbjct: 94 CLR-----ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID 143
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 77 FMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
F + G+TLL+ AS G VE+L + G+D N
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN 37
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
QL+E ++ D + + + V ++ T L++A+ + +VE+L + GADV+
Sbjct: 11 QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 69
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
QL+E ++ D + + + V ++ T L++A+ + +VE+L + GADV+
Sbjct: 15 QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 73
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
QL+E ++ D + + + V ++ T L++A+ + +VE+L + GADV+
Sbjct: 13 QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 71
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGADV 108
G+ L++A+ G++E+V L E GAD+
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEHGADI 147
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
++E + G ++N +D +GQT L+ A+ G + L G+D
Sbjct: 262 VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 64 LIETIDSGGVEVNFMDDV-GQTLLNWASAFGTQEMVEFLCERGADVNK 110
++E + S G +VN + G+T L+ A ++V L + GADVN+
Sbjct: 129 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 176
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGADVN 109
G T L+ AS G +VE L GADVN
Sbjct: 114 GHTCLHLASIHGYLGIVELLVSLGADVN 141
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 62 DALIETIDSGGVEVNFM---DDVGQTLLNWASAFGTQEMVEFLCERGAD 107
D+++E +D + N + D G T LN A+ G +V+ L + GAD
Sbjct: 260 DSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 308
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 64 LIETIDSGGVEVNFMDDV-GQTLLNWASAFGTQEMVEFLCERGADVNK 110
++E + S G +VN + G+T L+ A ++V L + GADVN+
Sbjct: 132 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 179
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGADVN 109
G T L+ AS G +VE L GADVN
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVN 144
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 57 RSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
R D AL + ++ +V+ +D+ G+T L + + G+ + V L E GAD++
Sbjct: 53 RKADEQALSQLLED--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 57 RSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
R D AL + ++ +V+ +D+ G+T L + + G+ + V L E GAD++
Sbjct: 54 RKADEQALSQLLED--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 104
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 52 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL 101
L E + + L E +D+ V VN +D G T L WA G +++VE L
Sbjct: 77 LHEAAKRGNLSWLRECLDNR-VGVNGLDKAGSTALYWACHGGHKDIVEXL 125
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
++E + + +VN +DD+G++ L+WA+A + L + GA+
Sbjct: 107 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 150
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
++E + + +VN +DD+G++ L+WA+A + L + GA+
Sbjct: 104 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 147
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
++E + + +VN +DD+G++ L+WA+A + L + GA+
Sbjct: 30 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 73
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 62 DALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
+ ++E + + +VN +DD+G++ L+WA+A + L + GA+
Sbjct: 138 EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 183
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
++E + + +VN +DD+G++ L+WA+A + L + GA+
Sbjct: 139 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 182
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
++E + + +VN +DD+G++ L+WA+A + L + GA+
Sbjct: 139 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 182
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
G + + +D G + ++ A+ FG +V +L +G DV+
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
I G + D+ T L+WA+ G MV L + GAD
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,816,773
Number of Sequences: 62578
Number of extensions: 84532
Number of successful extensions: 449
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 209
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)