RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2938
(113 letters)
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 49.0 bits (118), Expect = 1e-08
Identities = 21/43 (48%), Positives = 24/43 (55%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ G VN D+ G T L WASAFG E V FL E GAD +
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Score = 44.7 bits (107), Expect = 5e-07
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
V++N D G T L +A + VE L RGAD+
Sbjct: 90 ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT 130
Score = 44.3 bits (106), Expect = 8e-07
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G + + + ++ L+ AS G ++V L ER D+N
Sbjct: 57 EWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Score = 42.0 bits (100), Expect = 4e-06
Identities = 7/41 (17%), Positives = 19/41 (46%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ G ++ D G T ++ A A G +++ + + + +
Sbjct: 123 ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQ 163
Score = 33.5 bits (78), Expect = 0.006
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGAD-VNK 110
++ +A G + ++ +G + VNK
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNK 31
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 47.8 bits (115), Expect = 2e-08
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 71 GGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G ++ + L A+A G E V L E GAD N
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA 40
Score = 42.8 bits (102), Expect = 2e-06
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G + N ++ G+ + G+ ++ E L GA+ N
Sbjct: 33 EAGADPNALNRFGRRPIQVM-MMGSAQVAELLLLHGAEPNC 72
Score = 40.1 bits (95), Expect = 2e-05
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 72 GVEVNFMDDVGQTL-LNWASAFGTQEMVEFLCERGADVNK 110
G E N D T ++ A+ G + + L GA ++
Sbjct: 67 GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV 106
Score = 39.7 bits (94), Expect = 2e-05
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
G ++ D G+ ++ A G +++ +L D
Sbjct: 99 RAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 49.0 bits (118), Expect = 2e-08
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
L+ GG E++ +++ QT L+ A +V L GA
Sbjct: 28 LVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMA 74
Score = 43.2 bits (103), Expect = 2e-06
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G VN G + L+ AS G +V L GAD +
Sbjct: 173 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL 211
Score = 41.3 bits (98), Expect = 1e-05
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
L+++ G +++ + G T L+ A QE V+ L ERGAD++
Sbjct: 98 LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDA 144
Score = 37.4 bits (88), Expect = 3e-04
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 70 SGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G +++ +D G++ L A + MV+ L + GA+VN
Sbjct: 137 ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA 178
Score = 35.1 bits (82), Expect = 0.002
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA----DVNK 110
+ G +D GQT + A + + L + A D+
Sbjct: 67 TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA 111
Score = 34.7 bits (81), Expect = 0.002
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 106
G + + + T L A + +++ R A
Sbjct: 204 RSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 34.4 bits (80), Expect = 0.003
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 75 VNFMDDVGQTLLNWASAFGTQEMVEFLCER----GADVNK 110
D+ G T L+ A G V L G +++
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI 41
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 48.2 bits (116), Expect = 3e-08
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+D+ ++N DD G + L+WA G +VE L RGA +N
Sbjct: 25 LDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67
Score = 41.6 bits (99), Expect = 7e-06
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
++N +++ G L++A +G ++ E L GA V+
Sbjct: 95 KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133
Score = 41.3 bits (98), Expect = 8e-06
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G +N M+ T L+ A++ G +++V+ L + AD+N
Sbjct: 60 MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Score = 40.1 bits (95), Expect = 2e-05
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G V+ + G+ ++ A A + + E + G ++N+
Sbjct: 128 GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR 166
Score = 30.5 bits (70), Expect = 0.059
Identities = 5/34 (14%), Positives = 9/34 (26%), Gaps = 1/34 (2%)
Query: 79 DDVGQTLLNWASAFGTQEMVEFLCERGA-DVNKG 111
+ G V + D+N+G
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG 35
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 48.1 bits (115), Expect = 3e-08
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
G+++ D G T L + ++ + + N
Sbjct: 140 FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181
Score = 40.8 bits (96), Expect = 2e-05
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 72 GVEVNFMDDVGQTLLNWASAFG------TQEMVEFLCERGADVNK 110
G ++ G TL G T E+ + E+GAD+
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109
Score = 38.1 bits (89), Expect = 1e-04
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 52 LIECIRSKDTDALIETIDSGGV--EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ + +E + G E ++ +L + ++ FL +GAD+
Sbjct: 10 VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK 69
Score = 33.9 bits (78), Expect = 0.005
Identities = 3/47 (6%), Positives = 12/47 (25%), Gaps = 7/47 (14%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVE-------FLCERGADVN 109
G ++ + + ++ + E + G +
Sbjct: 102 EKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148
Score = 28.1 bits (63), Expect = 0.45
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGADVNK 110
++ A+ GT E L E+G + +
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKE 34
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 48.6 bits (117), Expect = 3e-08
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
++ +E+N D G+T L A +++ E LC+RGA +
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281
Score = 44.4 bits (106), Expect = 1e-06
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
S G +VN D G T A+ +G + ++FL +RGA+VN
Sbjct: 93 SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL 133
Score = 42.8 bits (102), Expect = 3e-06
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G + G T A+ G+ ++++ +GADVN+
Sbjct: 62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE 100
Score = 42.1 bits (100), Expect = 8e-06
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFG----TQEMVEFLCERGADVNK 110
+D G +VN D++G+ L A + + L + GADVN
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214
Score = 41.7 bits (99), Expect = 1e-05
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 70 SGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
GG VNF + + G T L+ A +++VE L GAD
Sbjct: 26 EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Score = 40.5 bits (96), Expect = 3e-05
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 63 ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL-CERGADVNK 110
A + + + G T L A+ G E+++ L E GADVN
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 177
Score = 40.1 bits (95), Expect = 4e-05
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-GADVNK 110
G +VN + G+T L A +V+ L E+ ++N
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248
Score = 39.0 bits (92), Expect = 9e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGADVNK 110
LL A ++V+ L E GA+VN
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNF 33
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 46.2 bits (111), Expect = 3e-08
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 111
G +VN D G+T L+ A+ G E+V+ L E GADVN
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Score = 38.9 bits (92), Expect = 2e-05
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGADVNK 110
G+T L+ A+ G E+V+ L E GADVN
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNA 30
Score = 35.4 bits (83), Expect = 5e-04
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 106
G +VN D G+T L+ A+ G E+V+ L E GA
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 47.9 bits (115), Expect = 6e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
SG + G T L+ A+A G E+++ L + DVN
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI 227
Score = 45.6 bits (109), Expect = 4e-07
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G ++N+ + G T L+ A +MV+FL E GA++N+
Sbjct: 61 ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ 101
Score = 44.0 bits (105), Expect = 1e-06
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+VN D G T L+ A+ +G +E L E D+
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA 260
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G +N D+ G L+ A++ G ++ E+L +GA V
Sbjct: 94 ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA 134
Score = 39.4 bits (93), Expect = 7e-05
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 65 IETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+E + D G L A + G E V L ERGAD+N
Sbjct: 24 LEPPVVKRKKTKVKFDDGAVFL-AACSSGDTEEVLRLLERGADINY 68
Score = 33.2 bits (77), Expect = 0.009
Identities = 6/41 (14%), Positives = 17/41 (41%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK 112
++ ++ VGQT + A + E ++ ++ +
Sbjct: 255 LCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295
Score = 32.9 bits (76), Expect = 0.011
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-GADVN 109
S G V ++ G T L+ A +E+++ R G D+
Sbjct: 127 SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE 167
Score = 30.2 bits (69), Expect = 0.10
Identities = 3/43 (6%), Positives = 13/43 (30%), Gaps = 7/43 (16%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
++ GV++ ++ ++L + +
Sbjct: 159 VNRQGVDIE-------AARKEEERIMLRDARQWLNSGHINDVR 194
Score = 29.8 bits (68), Expect = 0.16
Identities = 3/32 (9%), Positives = 8/32 (25%)
Query: 79 DDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
D + G++ +E +
Sbjct: 5 DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKV 36
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 47.9 bits (115), Expect = 7e-08
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
S G+ + G T L+ AS G +V+ L +RGA N
Sbjct: 2 SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNV 42
Score = 46.3 bits (111), Expect = 3e-07
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
GV V+ +G T L+ AS +G ++V+FL + ADVN
Sbjct: 299 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA 339
Score = 45.9 bits (110), Expect = 3e-07
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
N G T L+ A+ G E V L E+ A
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC 141
Score = 45.6 bits (109), Expect = 5e-07
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 111
G N G T L+ A+ G EMV L + A+ N G
Sbjct: 235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274
Score = 44.8 bits (107), Expect = 8e-07
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
N G T L+ A ++V+ L RG +
Sbjct: 167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS 207
Score = 44.8 bits (107), Expect = 1e-06
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
M G T L+ A+ +G + E L ER A N
Sbjct: 134 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA 174
Score = 44.0 bits (105), Expect = 2e-06
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G N + +T L+ A+ G E+ ++L + A VN
Sbjct: 35 QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Score = 44.0 bits (105), Expect = 2e-06
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+VN QT L+ A+ G MV+ L E A+ N
Sbjct: 70 KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL 108
Score = 43.6 bits (104), Expect = 2e-06
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G + G T L+ A+ E+ L + G N
Sbjct: 200 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA 240
Score = 43.3 bits (103), Expect = 3e-06
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
N + G T L+ + G + + L + G V+
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 306
Score = 42.9 bits (102), Expect = 4e-06
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+VN +G + L+ A+ G ++V L + GA N+
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 372
Score = 35.9 bits (84), Expect = 0.001
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC---ERGADVNK 110
G N + G T L A G + + L + + V
Sbjct: 365 KNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLV 408
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 47.4 bits (114), Expect = 8e-08
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK 112
+ G ++ T L A + V+ L E GADVN+GK
Sbjct: 122 AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK 164
Score = 43.6 bits (104), Expect = 2e-06
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
S G VN + + L+ A G V+ L + GA VN
Sbjct: 24 SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Score = 42.8 bits (102), Expect = 3e-06
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK 112
G +VN + T L A G+ + V L + GA V
Sbjct: 59 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 99
Score = 41.3 bits (98), Expect = 1e-05
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G +VN + L+ + ++E+ L + GAD
Sbjct: 155 ESGADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQA 194
Score = 38.6 bits (91), Expect = 1e-04
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G V D + ++ A+ G E V L G +++
Sbjct: 92 GASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDH 129
Score = 35.9 bits (84), Expect = 0.001
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ ++ A+ G Q + L +G VN
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNI 31
Score = 35.5 bits (83), Expect = 0.001
Identities = 4/39 (10%), Positives = 11/39 (28%), Gaps = 2/39 (5%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G + + G+ + + + ER +
Sbjct: 189 GADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSL 225
Score = 32.8 bits (76), Expect = 0.013
Identities = 1/35 (2%), Positives = 7/35 (20%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 106
+ M + ++ + +
Sbjct: 220 EGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 46.6 bits (112), Expect = 9e-08
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ V + ++ G+T L FG+ + L ++GA N
Sbjct: 22 LHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNV 63
Score = 41.2 bits (98), Expect = 7e-06
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G N D G + ++ A+ G + ++ L E GADVN
Sbjct: 58 GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV 96
Score = 38.9 bits (92), Expect = 5e-05
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G +VN D G ++ A G +V FL +D+++
Sbjct: 89 EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHR 128
Score = 28.9 bits (66), Expect = 0.22
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 82 GQTLLNWASAFG-TQEMVEFLCERGADVNK 110
L+ A+A G QE+ L +
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDA 31
Score = 28.1 bits (64), Expect = 0.38
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFL 101
+++ D G T L A G Q++V+ L
Sbjct: 123 ESDLHRRDARGLTPLELALQRGAQDLVDIL 152
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 47.5 bits (114), Expect = 9e-08
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 52 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
L+E RS + + L+ + V + D T L+ A+ + +V+ L + GADV+
Sbjct: 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86
Score = 43.3 bits (103), Expect = 3e-06
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G VN + T L+ A+ +++E L + GA +N
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA 275
Score = 41.7 bits (99), Expect = 1e-05
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G +V+ D G L+ A ++G E+ E L + GA VN
Sbjct: 79 QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119
Score = 41.3 bits (98), Expect = 1e-05
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G VN MD T L+ A++ E+ L GAD
Sbjct: 114 GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL 152
Score = 40.9 bits (97), Expect = 2e-05
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G ++N +D +GQT L+ A+ G + L G+D +
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI 308
Score = 39.0 bits (92), Expect = 9e-05
Identities = 4/42 (9%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 70 SGGVEVNFMDDVGQT-LLNWASAFGTQEMVEFLCERGADVNK 110
+ + + LL A + ++++ L + +
Sbjct: 12 DPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHA 53
Score = 37.5 bits (88), Expect = 3e-04
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 52 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQ---EMVEFLCERGADV 108
L++ R D + +T+ + +T L+ A A ++ E L +GA+V
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFK-QPQSHETALHCAVASLHPKRKQVAELLLRKGANV 240
Query: 109 NK 110
N+
Sbjct: 241 NE 242
Score = 31.3 bits (72), Expect = 0.038
Identities = 4/38 (10%), Positives = 17/38 (44%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
G + ++ G++ ++ A +E + + + + +
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ 184
Score = 30.2 bits (69), Expect = 0.10
Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 9/46 (19%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GKL 113
G + + + G T + E V+ + + +L
Sbjct: 303 GSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVDYRL 343
Score = 28.6 bits (65), Expect = 0.40
Identities = 7/60 (11%), Positives = 17/60 (28%), Gaps = 3/60 (5%)
Query: 56 IRSKDTD---ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK 112
+ A+ E + G +LL A ++ + L + + +
Sbjct: 150 PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ 209
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 45.8 bits (110), Expect = 9e-08
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
S G +VN G T L+ A+ G E+V+ L +GADVN
Sbjct: 30 SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Score = 41.6 bits (99), Expect = 3e-06
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ G +VN G T + A G E+V+ L +GADVN
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 38.5 bits (91), Expect = 6e-05
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 79 DDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G T L+ A+ G E V+ L +GADVN
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA 37
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 46.2 bits (111), Expect = 1e-07
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+N D+ G T L WA+A G +VEFL + GAD
Sbjct: 24 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64
Score = 44.3 bits (106), Expect = 7e-07
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
GV+VN D G T L +A + V+ L E GAD
Sbjct: 90 DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130
Score = 43.1 bits (103), Expect = 1e-06
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G + + ++ L+ A + G ++V+ L + G DVN+
Sbjct: 57 QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Score = 40.4 bits (96), Expect = 2e-05
Identities = 6/41 (14%), Positives = 15/41 (36%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G + D G ++ A A G + + + + + +
Sbjct: 123 ESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQ 163
Score = 36.2 bits (85), Expect = 5e-04
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGADVNK 110
++ +A G + E+ +N
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINH 31
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 46.5 bits (111), Expect = 2e-07
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ + ++ G T L+ A +V+FL GA+VN
Sbjct: 42 KEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNS 82
Score = 45.3 bits (108), Expect = 4e-07
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ G VN D G T L+ A++ + L + GA +
Sbjct: 75 TAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA 115
Score = 37.6 bits (88), Expect = 2e-04
Identities = 7/45 (15%), Positives = 13/45 (28%), Gaps = 3/45 (6%)
Query: 70 SGGVEVNFMDDV---GQTLLNWASAFGTQEMVEFLCERGADVNKG 111
LL A+ G E+V+ + D ++
Sbjct: 6 RKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP 50
Score = 33.0 bits (76), Expect = 0.009
Identities = 5/46 (10%), Positives = 11/46 (23%), Gaps = 3/46 (6%)
Query: 70 SGGVEVNFMDDV-GQTLLNWASAF--GTQEMVEFLCERGADVNKGK 112
G + G T + G + +L + +
Sbjct: 108 QHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN 153
Score = 31.5 bits (72), Expect = 0.040
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 58 SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVE 99
S + + + V V D +T WA+ G + V
Sbjct: 164 SAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205
Score = 29.5 bits (67), Expect = 0.15
Identities = 7/47 (14%), Positives = 12/47 (25%), Gaps = 1/47 (2%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ + M+ L SA E + F V +
Sbjct: 138 CATYLADVEQSMGLMNSGAVYALWDYSAEFGDE-LSFREGESVTVLR 183
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 46.3 bits (111), Expect = 2e-07
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+V+ +D G T LN A E+ + L +RGAD+N
Sbjct: 27 DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67
Score = 42.8 bits (102), Expect = 3e-06
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAF-----GTQEMVEFLCERGADVNK 110
++ G +++F +D G T L A Q++V+ L E GAD +
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173
Score = 41.7 bits (99), Expect = 8e-06
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG-ADVNK 110
+ ++N + G L A+ G + V+ L E G D++
Sbjct: 92 LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF 135
Score = 40.5 bits (96), Expect = 2e-05
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 79 DDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
LL A+ T+++ E L + V++
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDE 34
Score = 39.4 bits (93), Expect = 5e-05
Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVNK 110
G ++N + + + +A A G E++ ++ + D+NK
Sbjct: 60 DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNK 101
Score = 32.0 bits (74), Expect = 0.021
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCE 103
G + + D+ G+T +++A+ G E+ + L +
Sbjct: 166 ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 45.1 bits (108), Expect = 2e-07
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ G +VN + G+ L++A+ G E++EFL +GAD+N
Sbjct: 28 AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68
Score = 41.6 bits (99), Expect = 3e-06
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G ++N D T L A G V+ L +GAD
Sbjct: 61 LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Score = 38.9 bits (92), Expect = 4e-05
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGADVNK 110
WA G + V+ +G DVN+
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNR 35
Score = 24.7 bits (55), Expect = 6.9
Identities = 4/30 (13%), Positives = 9/30 (30%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVE 99
S G + G T + +++
Sbjct: 94 SKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 46.6 bits (110), Expect = 2e-07
Identities = 15/78 (19%), Positives = 27/78 (34%)
Query: 32 IEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASA 91
++ + T + + R ++ +N D G T LN A+
Sbjct: 233 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR 292
Query: 92 FGTQEMVEFLCERGADVN 109
G +V+ L + GAD
Sbjct: 293 LGNISIVDALLDYGADPF 310
Score = 45.4 bits (107), Expect = 6e-07
Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 62 DALIETIDSGGVEVNF-MDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ + + + +N +D+ G T L+W ++ E+V+ L + G++
Sbjct: 110 QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL 158
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 45.9 bits (110), Expect = 3e-07
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ +G ++VN DD G T + WA+ + ++V+ L +G+D+N
Sbjct: 97 LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI 139
Score = 43.9 bits (105), Expect = 1e-06
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ +++ ++ G + L+ A+ + V R +DV
Sbjct: 165 AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL 205
Score = 43.6 bits (104), Expect = 2e-06
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G ++ + +T L A+ E V++L + GA V+
Sbjct: 32 QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Score = 43.2 bits (103), Expect = 3e-06
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
S G ++N D+ L+WA+ G ++ E L D++
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA 172
Score = 42.0 bits (100), Expect = 7e-06
Identities = 6/38 (15%), Positives = 17/38 (44%)
Query: 73 VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ ++ L+ A+ G ++ L + GA+++
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDT 39
Score = 39.7 bits (94), Expect = 4e-05
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVNK 110
G V+ D G T L+ A+ G E+V++L G DVN
Sbjct: 65 KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC 106
Score = 35.9 bits (84), Expect = 0.001
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
S +V + G+T L AS + + D
Sbjct: 198 SRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 44.6 bits (107), Expect = 3e-07
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G +VN D G+T L+ A+ G E+V+ L E GADVN
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Score = 44.3 bits (106), Expect = 4e-07
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G +VN D G+T L+ A+ G E+V+ L E GADVN
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 96
Score = 38.9 bits (92), Expect = 4e-05
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGADVNK 110
G+T L+ A+ G E+V+ L E GADVN
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNA 30
Score = 36.2 bits (85), Expect = 4e-04
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 106
G +VN D G+T L+ A+ G E+V+ L E GA
Sbjct: 89 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 45.9 bits (110), Expect = 3e-07
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK 112
+ G ++ T L A + V+ L E GADVN+GK
Sbjct: 178 AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK 220
Score = 43.6 bits (104), Expect = 2e-06
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
S G VN + + L+ A G V+ L + GA VN
Sbjct: 80 SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK 112
G +VN + T L A G+ + V L + GA V
Sbjct: 115 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 155
Score = 39.8 bits (94), Expect = 4e-05
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G +VN + L+ ++E+ L + GAD
Sbjct: 211 ESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQA 250
Score = 38.6 bits (91), Expect = 1e-04
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G V D + ++ A+ G E V L G +++
Sbjct: 146 QHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDH 185
Score = 37.9 bits (89), Expect = 2e-04
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
S + + + + ++ A+ G Q + L +G VN
Sbjct: 49 SNPLMGDAVS--DWSPMHEAAIHGHQLSLRNLISQGWAVNI 87
Score = 34.0 bits (79), Expect = 0.005
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK 112
G + + G+ + FL GA + K K
Sbjct: 243 DFGADTQAKNAEGKRPVELVPPES-PLAQLFLEREGASLPKPK 284
Score = 29.4 bits (67), Expect = 0.21
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 89 ASAFGTQEMVEFLCERGADVNK 110
S+ L RG+ +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMAS 23
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 45.5 bits (109), Expect = 4e-07
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G +V D TLL+WA+ ++V++ +GA V++
Sbjct: 30 EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70
Score = 44.7 bits (107), Expect = 7e-07
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G + + +D G + ++ A+ FG +V +L +G DV+
Sbjct: 97 KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137
Score = 44.3 bits (106), Expect = 1e-06
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 75 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ +DD + A+ +G E L E G DV +
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQ 37
Score = 43.2 bits (103), Expect = 3e-06
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 70 SGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
S G V+ + D+ T L+WA+ G MV L + GAD +
Sbjct: 63 SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL 104
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFG-TQEMVEFLCERGADVNK 110
+ G +V+ MD G T L WA+ + + L VN
Sbjct: 130 AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL 171
Score = 40.5 bits (96), Expect = 3e-05
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 70 SGGVEVNFMDDV-GQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ V VN D T L+WA G ++ L E GA+V+
Sbjct: 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA 205
Score = 39.0 bits (92), Expect = 1e-04
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G V+ + G++ L+ A M+ L E
Sbjct: 198 EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 44.7 bits (107), Expect = 4e-07
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
V ++ T L++A+ + +VE+L + GADV+
Sbjct: 28 CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Score = 41.6 bits (99), Expect = 6e-06
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G +V+ D G L+ A ++G E+ E L + GA VN
Sbjct: 63 QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Score = 40.5 bits (96), Expect = 2e-05
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G VN D T L+ A+A G E+ + L + GAD K
Sbjct: 96 KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK 136
Score = 30.0 bits (69), Expect = 0.081
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 82 GQTLLNWASAFGTQEMVEFLCER-GADVNK 110
L A+ G E V+ LC +
Sbjct: 8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRD 37
Score = 28.1 bits (64), Expect = 0.38
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 106
G + + G T L+ G ++ + L A
Sbjct: 131 GADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 164
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 45.3 bits (108), Expect = 5e-07
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 111
+ G+ V F + + LL +S G ++V+ + D +
Sbjct: 26 AHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP 66
Score = 44.9 bits (107), Expect = 6e-07
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
GV VN D G T L+ A++ ++ +FL E GA V
Sbjct: 91 QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Score = 42.6 bits (101), Expect = 4e-06
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 111
+ + +D G T L+ A G E+V+FL + G +VN
Sbjct: 58 YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99
Score = 38.7 bits (91), Expect = 1e-04
Identities = 6/35 (17%), Positives = 9/35 (25%)
Query: 79 DDVGQTLLNWASAFGTQEMVEFLCERGADVNKGKL 113
+ GQ L ++ G V L
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL 36
Score = 35.7 bits (83), Expect = 0.001
Identities = 4/37 (10%), Positives = 9/37 (24%)
Query: 74 EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ + D G + +FL +
Sbjct: 131 AMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI 167
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 45.6 bits (109), Expect = 5e-07
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
D + DD ++ A+ G + V L E G
Sbjct: 6 TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTI 48
Score = 44.5 bits (106), Expect = 1e-06
Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 64 LIET-IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+++T + +++ + G + L+WA +++ E G DVN
Sbjct: 192 MMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM 239
Score = 43.7 bits (104), Expect = 2e-06
Identities = 5/41 (12%), Positives = 7/41 (17%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
EV + G + A V
Sbjct: 311 EKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRT 351
Score = 41.4 bits (98), Expect = 1e-05
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 56 IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
++ D + G V V + A+ QE+++ L E+ +V +
Sbjct: 264 LQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVR 318
Score = 41.4 bits (98), Expect = 2e-05
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
GV + G T L+ A FG + ++L G +
Sbjct: 41 ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS 80
Score = 39.5 bits (93), Expect = 6e-05
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 111
G++VN D+ L + + + L ++
Sbjct: 232 EMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQ 273
Score = 37.9 bits (89), Expect = 2e-04
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 52 LIECIRSKDTDALIETIDSGGVEV-----NFMDDVGQTLLNWASAFGTQ--EMVEFLCER 104
L+E + + + EV + GQT L+W G + EM++ L +
Sbjct: 103 LVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL 162
Query: 105 GADVNK 110
GA
Sbjct: 163 GASPTA 168
Score = 35.6 bits (83), Expect = 0.001
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
S G + GQ ++ A ++V L E + +
Sbjct: 74 SVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERGQ 112
Score = 35.2 bits (82), Expect = 0.002
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-----GADVNK 110
G D +T L A F +E ++ + + ++
Sbjct: 161 QLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY 206
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 44.8 bits (107), Expect = 5e-07
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+V+ +D+ G+T L + + G+ + V L E GAD++
Sbjct: 66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103
Score = 39.4 bits (93), Expect = 5e-05
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 70 SGGVEVNFMDD-VGQTLLNWASAFGTQEMVEFLCERGADVN 109
G +++ D G T L+ A+ + E+VE L E GAD+
Sbjct: 97 EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 137
Score = 37.5 bits (88), Expect = 2e-04
Identities = 7/40 (17%), Positives = 12/40 (30%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
G ++ D+ G T L A + G +
Sbjct: 131 ELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG 170
Score = 31.7 bits (73), Expect = 0.023
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+V +T A+ ++ + L E DV+
Sbjct: 35 YIAADVV---SEYETPWWTAARKADEQALSQLLE-DRDVD 70
Score = 31.3 bits (72), Expect = 0.041
Identities = 5/42 (11%), Positives = 8/42 (19%)
Query: 69 DSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ + + G G ADV
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS 42
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 44.9 bits (107), Expect = 6e-07
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+V+ +D+ G+T L + + G+ + V L E GAD++
Sbjct: 67 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 104
Score = 40.3 bits (95), Expect = 3e-05
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 70 SGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVN 109
G +++ D G T L+ A+ + E+VE L E GAD+
Sbjct: 98 EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 138
Score = 39.1 bits (92), Expect = 8e-05
Identities = 7/40 (17%), Positives = 12/40 (30%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
G ++ D+ G T L A + G +
Sbjct: 132 ELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG 171
Score = 33.7 bits (78), Expect = 0.005
Identities = 4/54 (7%), Positives = 12/54 (22%), Gaps = 3/54 (5%)
Query: 59 KDTDALIETIDSG---GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ ++E E+ G+ + + A+
Sbjct: 173 EKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDV 226
Score = 31.8 bits (73), Expect = 0.024
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 4/47 (8%)
Query: 63 ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+V +T A+ ++ + L E DV+
Sbjct: 29 PSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLLE-DRDVD 71
Score = 30.6 bits (70), Expect = 0.077
Identities = 5/32 (15%), Positives = 5/32 (15%)
Query: 79 DDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G G ADV
Sbjct: 12 AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS 43
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 44.9 bits (107), Expect = 6e-07
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+E+N + +G T L+ A+ G ++V+ L +GA +
Sbjct: 126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168
Score = 39.9 bits (94), Expect = 4e-05
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL-CERGADVNK 110
V VN +D G T L WA G +++VE L + ++N+
Sbjct: 94 DNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ 135
Score = 39.5 bits (93), Expect = 6e-05
Identities = 6/39 (15%), Positives = 11/39 (28%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
V + L+ A+ G + + VN
Sbjct: 63 SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG 101
Score = 39.2 bits (92), Expect = 7e-05
Identities = 3/40 (7%), Positives = 12/40 (30%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ G + + + + A+ +++ A
Sbjct: 161 AKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT 200
Score = 31.8 bits (73), Expect = 0.024
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGADVNK 110
GQ + A + L D+
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGDIIY 40
Score = 27.6 bits (62), Expect = 0.81
Identities = 3/38 (7%), Positives = 13/38 (34%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++ ++ D+ T ++ G ++ +
Sbjct: 35 EGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAES 72
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 44.0 bits (105), Expect = 7e-07
Identities = 6/40 (15%), Positives = 15/40 (37%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
G ++ D G+ ++ A G +++ +L
Sbjct: 99 RAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR 138
Score = 42.1 bits (100), Expect = 4e-06
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G N + G+ + G+ + E L GA+ N
Sbjct: 33 EAGANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPNC 72
Score = 40.2 bits (95), Expect = 2e-05
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 72 GVEVNFMDDVGQTL-LNWASAFGTQEMVEFLCERGADVNK 110
G E N D T ++ A+ G + + L GA ++
Sbjct: 67 GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV 106
Score = 39.0 bits (92), Expect = 5e-05
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 79 DDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ L A+A G E V L E GA+ N
Sbjct: 9 MEPSADWLATAAARGRVEEVRALLEAGANPNA 40
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 44.9 bits (107), Expect = 7e-07
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 50 LQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ E + + I + G +VN MD T L A + +V +L + GAD
Sbjct: 138 AEKSEDLIVHEAKECI----AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT 193
Query: 110 K 110
Sbjct: 194 I 194
Score = 44.2 bits (105), Expect = 2e-06
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ G + D+ G+T + A+ G E+V +L ++GA V
Sbjct: 299 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA 341
Score = 41.9 bits (99), Expect = 9e-06
Identities = 5/49 (10%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK 112
L + + + L+ A G+ + E + ++ +
Sbjct: 76 LGDFNHTNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRESVNIIDPR 123
Score = 39.9 bits (94), Expect = 4e-05
Identities = 6/44 (13%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL---CERGADVNK 110
G + + ++ L+ A+A M+ ++ + D+ +
Sbjct: 187 KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE 230
Score = 39.2 bits (92), Expect = 9e-05
Identities = 7/39 (17%), Positives = 11/39 (28%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV 108
G V +D T A A +V+ +
Sbjct: 334 QQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372
Score = 38.0 bits (89), Expect = 2e-04
Identities = 3/39 (7%), Positives = 8/39 (20%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ N + G + +F +
Sbjct: 51 KRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTE 89
Score = 37.6 bits (88), Expect = 3e-04
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL-CERGADVNK 110
G + G+T L++A+ +V++L E+G++ +K
Sbjct: 267 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK 308
Score = 37.2 bits (87), Expect = 3e-04
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMV---EFLCERGADVNKG 111
++ +D G T L + ++ V + L E+GA V+
Sbjct: 225 KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 267
Score = 33.4 bits (77), Expect = 0.008
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL--------CERGADVNK 110
V + +T+L+W ++ + E E L GADVN
Sbjct: 114 RESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA 161
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 43.9 bits (105), Expect = 9e-07
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G + D G +++ A+ G + ++ L E ADVN
Sbjct: 58 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI 98
Score = 42.0 bits (100), Expect = 5e-06
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
V VN + G+T L G E+ L RGA+ +
Sbjct: 26 QNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDL 65
Score = 40.4 bits (96), Expect = 1e-05
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 78 MDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
M + L A+A G E + L + +VN
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNA 33
Score = 38.9 bits (92), Expect = 6e-05
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVNK 110
+VN D+ G L+ A+ G +VEFL + A +V
Sbjct: 91 EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Score = 37.0 bits (87), Expect = 3e-04
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 106
+ V + G T + A +G E+V + GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 44.4 bits (106), Expect = 1e-06
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ D G + +A A +V L GA N
Sbjct: 21 SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL 59
Score = 41.4 bits (98), Expect = 1e-05
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G++ + DD G T L +A G + V+ ++ +
Sbjct: 83 FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF 123
Score = 41.0 bits (97), Expect = 2e-05
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ G N ++ + L+ A+ ++V+ L G D ++
Sbjct: 52 NAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQ 90
Score = 40.2 bits (95), Expect = 3e-05
Identities = 5/40 (12%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 72 GVEVNFMDDVGQT-LLNWASAFGTQEMVEFLCERGADVNK 110
N + + + A EM++ L + ++
Sbjct: 184 MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS 223
Score = 37.9 bits (89), Expect = 2e-04
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 79 DDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ + ++ G +M+ L + N
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLDYMTSTNT 189
Score = 37.1 bits (87), Expect = 4e-04
Identities = 5/44 (11%), Positives = 9/44 (20%), Gaps = 1/44 (2%)
Query: 70 SGGVEVNFMDDVG-QTLLNWASAFGTQEMVEFLCERGADVNKGK 112
+ F G +T A +V +
Sbjct: 116 KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA 159
Score = 32.9 bits (76), Expect = 0.013
Identities = 2/38 (5%), Positives = 10/38 (26%), Gaps = 7/38 (18%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ + + E+ + + E+ +
Sbjct: 218 DINIY-------SANLENVLLDDAEIAKMIIEKHVEYK 248
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 43.9 bits (105), Expect = 1e-06
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G +VN +D G T L A+ FG E+VE L + GADVN
Sbjct: 68 KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA 108
Score = 43.9 bits (105), Expect = 1e-06
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G +VN D G T L+ A+ FG E+VE L + GADVN
Sbjct: 101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141
Score = 43.1 bits (103), Expect = 2e-06
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 35 ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75
Score = 36.6 bits (86), Expect = 4e-04
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGADVNK 110
L A+ G + V L GADVN
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNA 42
Score = 30.0 bits (69), Expect = 0.10
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL 101
G +VN D G+T + + G +++ E L
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
I + +++ G T L A+ + M+E L ADVN
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 152
Score = 42.8 bits (102), Expect = 3e-06
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G + ++ +T L A+ G+ E + L + A+ +
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 218
Score = 41.7 bits (99), Expect = 8e-06
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ +VN +DD+G++ L+WA+A + L + GA+ +
Sbjct: 145 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 184
Score = 38.6 bits (91), Expect = 1e-04
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 70 SGGVEV-NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G + N D G+T L+ A+ + + + L E AD N
Sbjct: 44 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI 85
Score = 37.1 bits (87), Expect = 4e-04
Identities = 4/40 (10%), Positives = 11/40 (27%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ D + + + A ++V L +
Sbjct: 211 DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250
Score = 36.3 bits (85), Expect = 7e-04
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVN 109
+ N D++G+T L+ A + Q + + L A D++
Sbjct: 78 EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Score = 29.0 bits (66), Expect = 0.24
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 13/53 (24%)
Query: 73 VEVNFMDDVGQTLLNWASAFGTQ-------------EMVEFLCERGADVNKGK 112
++VN G T L AS G ++ +GA ++
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT 53
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 44.1 bits (104), Expect = 1e-06
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ D +T L+WA + G E+VEFL + G VN
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Score = 40.2 bits (94), Expect = 3e-05
Identities = 11/101 (10%), Positives = 27/101 (26%), Gaps = 2/101 (1%)
Query: 9 IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETI 68
D H AA + K + + + ++ + +
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191
Query: 69 DSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ G + + +T L A G ++ G + +
Sbjct: 192 VTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230
Score = 39.9 bits (93), Expect = 4e-05
Identities = 17/102 (16%), Positives = 31/102 (30%)
Query: 9 IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETI 68
+ + P H A+ N+ + K + +K ++ +
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158
Query: 69 DSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
N D G T L+ A E +FL +GA +
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI 200
Score = 38.7 bits (90), Expect = 1e-04
Identities = 18/90 (20%), Positives = 31/90 (34%)
Query: 21 HCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDD 80
H A+ + ++ H N + SK+ + + GG + D
Sbjct: 78 HIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Query: 81 VGQTLLNWASAFGTQEMVEFLCERGADVNK 110
T ++ A+A G +MV L A N
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFYKASTNI 167
Score = 37.5 bits (87), Expect = 3e-04
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
GV VN DD G + L+ A++ G E+V+ L +GA VN
Sbjct: 61 QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Score = 36.4 bits (84), Expect = 6e-04
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ N A + E+ E + + +
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATR 35
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 43.9 bits (105), Expect = 1e-06
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G + ++ +T L A+ G+ E + L + A+ +
Sbjct: 146 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 186
Score = 43.2 bits (103), Expect = 2e-06
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
I + +++ G T L A+ + M+E L ADVN
Sbjct: 78 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120
Score = 42.8 bits (102), Expect = 3e-06
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ +VN +DD+G++ L+WA+A + L + GA+ +
Sbjct: 113 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 153
Score = 38.9 bits (92), Expect = 7e-05
Identities = 5/39 (12%), Positives = 12/39 (30%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ D + + + A ++V L E +
Sbjct: 181 FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP 219
Score = 38.9 bits (92), Expect = 9e-05
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 76 NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
N D G+T L+ A+ + + + L E AD N
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANI 53
Score = 37.0 bits (87), Expect = 4e-04
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVNK 110
+ N D++G+T L+ A + Q + + L A D++
Sbjct: 46 EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 42.8 bits (102), Expect = 2e-06
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ G +VN D+ G T L A+A G E+VE L + GADVN
Sbjct: 35 ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75
Score = 42.0 bits (100), Expect = 4e-06
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G +VN +D +G T L+ A+ G E+ E L + GADVN
Sbjct: 68 KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNA 108
Score = 32.7 bits (76), Expect = 0.009
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGADVNK 110
L A+ G + V L GADVN
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNA 42
Score = 29.7 bits (68), Expect = 0.11
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL 101
G +VN D G+T + + G +++ E L
Sbjct: 101 KHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 43.1 bits (103), Expect = 2e-06
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G VN D G+T L W+ FG EM FL E GA+VN
Sbjct: 91 GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND 129
Score = 43.1 bits (103), Expect = 2e-06
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
++ D G T L WA + E L +G++VN
Sbjct: 56 ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Score = 42.8 bits (102), Expect = 3e-06
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
G VN + G+T L AS +G E+V+ L E GAD++
Sbjct: 122 EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS 161
Score = 42.0 bits (100), Expect = 5e-06
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 70 SGGVEV--NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ ++ N+ D +T L A G + ++ L E +
Sbjct: 21 NQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLED 63
Score = 30.8 bits (71), Expect = 0.047
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCE 103
G +++ D G T A FG QE+++ E
Sbjct: 157 GADISARDLTGLTAEASARIFGRQEVIKIFTE 188
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 42.8 bits (102), Expect = 2e-06
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G +VN D + T L+WA+ QE+VE L + GADV+
Sbjct: 88 KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128
Score = 42.0 bits (100), Expect = 4e-06
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
GV + V +T L+ A++ G +VE L + GADVN
Sbjct: 55 RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA 95
Score = 38.1 bits (90), Expect = 9e-05
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGADVNKGK 112
L A+ G + V L GA
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTTDW 32
Score = 38.1 bits (90), Expect = 1e-04
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ G D +G + L+ A+ +G E L G +
Sbjct: 23 ANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Score = 29.3 bits (67), Expect = 0.15
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL 101
G +V+ +T + + G +++ E L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 43.2 bits (103), Expect = 2e-06
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
S + D G+ L+W+ +F E+ FL + +VN
Sbjct: 24 SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Score = 42.4 bits (101), Expect = 5e-06
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
++N + + G T L+ A E+ +FL E GA V
Sbjct: 97 KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Score = 40.5 bits (96), Expect = 3e-05
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG-ADVNK 110
G V D Q L+ A++ G+ +++E LC G + VN
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 169
Score = 39.4 bits (93), Expect = 6e-05
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-GADVNK 110
G VN+ D G T L A A G + L E+ GA+ +
Sbjct: 160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203
Score = 34.7 bits (81), Expect = 0.003
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 70 SGGVEVNFMDDV---GQTLLNWASAFGTQEMVEFLCER--GADVNK 110
S VN D G T + A + G E+V+ L +R D+NK
Sbjct: 57 SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK 102
Score = 33.2 bits (77), Expect = 0.007
Identities = 4/31 (12%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 81 VGQTLLNWASAFG-TQEMVEFLCERGADVNK 110
+ L+ A ++ E L + + + +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQ 31
Score = 27.0 bits (61), Expect = 1.1
Identities = 6/34 (17%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL 101
++ G E + +D+ G + A +++ +F
Sbjct: 194 VEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFF 224
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 42.0 bits (100), Expect = 3e-06
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
VN + L+ A+ G ++V+ L GA N
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104
Score = 41.6 bits (99), Expect = 4e-06
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G + N D G T L+ A G ++VE L + A VN
Sbjct: 31 QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Score = 40.1 bits (95), Expect = 2e-05
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G++ + G+TLL+ AS G VE+L + G+D N
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV 38
Score = 31.2 bits (72), Expect = 0.026
Identities = 4/38 (10%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
G N ++ G +++ + ++ E+ +
Sbjct: 99 GASRNAVNIFGLRPVDYTDDESMKSLLLLP-EKNESSS 135
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 41.0 bits (97), Expect = 5e-06
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV 108
+ G +V D G T L+ A+ G E+V+ L E GADV
Sbjct: 45 ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Score = 37.6 bits (88), Expect = 9e-05
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G + D L A+ G + V L GADV
Sbjct: 15 PRGSHMG--SD-LGKKLLEAARAGQDDEVRILMANGADVAA 52
Score = 31.4 bits (72), Expect = 0.018
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 89 ASAFGTQEMVEFLCERGADVNK 110
S+ L RG+ +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS 22
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 42.5 bits (101), Expect = 6e-06
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 65 IETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ +++ + G T L+ A EMV L + GAD+NK
Sbjct: 141 EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186
Score = 42.1 bits (100), Expect = 7e-06
Identities = 8/41 (19%), Positives = 12/41 (29%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G + G+T L A + L GA +
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253
Score = 41.4 bits (98), Expect = 1e-05
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 70 SGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G ++N + G+T L+ A ++E L + GAD
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA 220
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 74 EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
++ +D+GQT L+ A+ G VE L GA V
Sbjct: 37 YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV 73
Score = 38.7 bits (91), Expect = 1e-04
Identities = 7/39 (17%), Positives = 11/39 (28%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G V + G T L+ A L + +
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPR 106
Score = 35.2 bits (82), Expect = 0.002
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 75 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
++ + G T L+ A + ++FL A
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY 37
Score = 26.7 bits (60), Expect = 1.6
Identities = 2/36 (5%), Positives = 9/36 (25%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG 105
+ G + + + + + + E
Sbjct: 246 AHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 26.0 bits (58), Expect = 2.7
Identities = 2/32 (6%), Positives = 5/32 (15%)
Query: 79 DDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
D + E + +
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA 153
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 42.2 bits (100), Expect = 7e-06
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+I + +NF +++ QT L+ A E+ E L G D
Sbjct: 27 VIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL 73
Score = 39.1 bits (92), Expect = 8e-05
Identities = 5/41 (12%), Positives = 14/41 (34%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G +VN + G + + + + L + + +
Sbjct: 172 KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ 212
Score = 38.7 bits (91), Expect = 1e-04
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 70 SGGVEVNFMDDV-GQTLLNWASAFGTQEMVEFLCERGADVNK 110
S G +VN + G+T L+ A ++V L + GADVN+
Sbjct: 138 SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 179
Score = 37.9 bits (89), Expect = 2e-04
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ + G T L+ AS G +VE L GADVN
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144
Score = 35.2 bits (82), Expect = 0.002
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 111
G + D G T L+ A G V L + +
Sbjct: 66 GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107
Score = 30.6 bits (70), Expect = 0.060
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 79 DDVGQTLLNWASAFG----TQEMVEFLCERGADVNK 110
+ G + L+ A T E++ + A +N
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF 40
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 42.1 bits (99), Expect = 7e-06
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 49 ILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV 108
I L++ ++ TD+L + + GQT L+ A +V L E GADV
Sbjct: 73 IALLLD--VARKTDSLKQFV---NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV 127
Query: 109 NK 110
Sbjct: 128 QA 129
Score = 35.9 bits (83), Expect = 0.001
Identities = 6/42 (14%), Positives = 15/42 (35%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ + G T L A++ G ++ ++ +R
Sbjct: 219 LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP 260
Score = 31.7 bits (72), Expect = 0.035
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 63 ALIETIDSGGV----EVNFMDDVGQTLLNWASAFGTQEMVEFLCERG---ADVNK 110
A ++ +G + G+ L+ A+ +V+FL + AD++
Sbjct: 125 ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA 179
Score = 25.9 bits (57), Expect = 3.3
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 9/49 (18%)
Query: 72 GVEVNFMDDVGQTLLNWASAFG---------TQEMVEFLCERGADVNKG 111
+++ D VG T+L+ M + GA ++
Sbjct: 174 PADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT 222
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 40.1 bits (94), Expect = 3e-05
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 75 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ GQT L+ A + VE L E+GADV+
Sbjct: 86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH 120
Score = 33.2 bits (76), Expect = 0.008
Identities = 5/45 (11%), Positives = 14/45 (31%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK 112
+ +++ G + L A+ G + + + R
Sbjct: 211 LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAH 255
Score = 30.9 bits (70), Expect = 0.052
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERG---ADVNK 110
G+ L+ A+ +V +L E G AD+ +
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQADLRR 171
Score = 26.7 bits (59), Expect = 1.8
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 9/45 (20%)
Query: 75 VNFMDDVGQTLLNWASAFG---------TQEMVEFLCERGADVNK 110
+ D G T+L+ A +M + L + A +
Sbjct: 169 LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFP 213
Score = 25.9 bits (57), Expect = 3.4
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 89 ASAFGTQEMVEFLCERGADVN 109
S G + ++ FL +
Sbjct: 16 GSPDGLEGLLSFLLTHKKRLT 36
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 39.1 bits (92), Expect = 6e-05
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 57 RSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ D AL + + G EV+ +G+T L+ A+ + E L E ++
Sbjct: 12 KENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65
Score = 38.4 bits (90), Expect = 1e-04
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ + GQT L+ A +V L RGA V+
Sbjct: 61 PELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVS 102
Score = 36.4 bits (85), Expect = 6e-04
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 56 IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ ++ T + + G+ L++A+ G++E+V L E GAD+
Sbjct: 101 VSARATG------SVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR 148
Score = 36.0 bits (84), Expect = 0.001
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 79 DDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++ G T A G M + L ++ +
Sbjct: 194 NNQGLTPFKLAGVEGNIVMFQHLMQKRKHIA 224
Score = 33.0 bits (76), Expect = 0.012
Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 4/42 (9%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMV----EFLCERGADVN 109
G ++ D +G T+L+ + L +
Sbjct: 144 GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH 185
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 38.4 bits (89), Expect = 1e-04
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
G ++ G T L++A+ + + ++ L + A V
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 38.1 bits (88), Expect = 2e-04
Identities = 8/60 (13%), Positives = 21/60 (35%)
Query: 50 LQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
L L + + +++ + ++ G T L++ E ++ L A +
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE 232
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 37.2 bits (86), Expect = 4e-04
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 4/65 (6%)
Query: 48 NILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
N L++ IR + I+ + LL A G Q L +
Sbjct: 289 NDEVLLDDIRFLLSIPGIKA----LAPTATIPGDANELLRLALRLGNQGACALLLSIPSV 344
Query: 108 VNKGK 112
+ K
Sbjct: 345 LALTK 349
Score = 36.8 bits (85), Expect = 5e-04
Identities = 6/42 (14%), Positives = 11/42 (26%)
Query: 70 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 111
+ V + A+ G ++ LCE
Sbjct: 116 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA 157
Score = 28.8 bits (64), Expect = 0.34
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGADVNK 110
A+ G ++ LCE
Sbjct: 163 NYHAFRLAAENGHLHVLNRLCELAPTEAT 191
Score = 24.5 bits (53), Expect = 9.4
Identities = 6/47 (12%), Positives = 12/47 (25%), Gaps = 1/47 (2%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
L E + + A G ++ FL + +
Sbjct: 182 LCE-LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY 227
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 36.7 bits (85), Expect = 6e-04
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ G + L+ A + + V+ L E GADV+
Sbjct: 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH 117
Score = 35.5 bits (82), Expect = 0.002
Identities = 7/44 (15%), Positives = 13/44 (29%)
Query: 66 ETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ + G T L A+ G E+ + +R
Sbjct: 205 ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248
Score = 31.7 bits (72), Expect = 0.031
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 6/61 (9%)
Query: 56 IRSKDTDALIETIDSGG------VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ + A +E DS G + + + + L G +M LC
Sbjct: 156 LENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE 215
Query: 110 K 110
Sbjct: 216 I 216
Score = 30.5 bits (69), Expect = 0.073
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 63 ALIETIDSGGV---EVNFMDDVGQTLLNWASAFGTQEMVEFLCERG---ADVNK 110
A + G G+ L+ A+ ++V +L E A +
Sbjct: 114 ADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA 167
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 32.1 bits (72), Expect = 0.029
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 33 EYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFM--DDVGQTLLNWAS 90
K + L + + + G +VN++ T L A+
Sbjct: 184 RSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQAT 243
Query: 91 AFGTQEMVEFLCERGADVNK 110
A + EFL + GA+VN+
Sbjct: 244 AANSLLACEFLLQNGANVNQ 263
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.10
Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 26/119 (21%)
Query: 1 MKKKASKAIQTFDVG------------RYQPSHCQAALNQEGNIEYKAHTKTHKT---FK 45
+ K + +Q F V + Q ++ IE + + F
Sbjct: 71 LLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ--RDRLYNDNQVFA 127
Query: 46 TSNI--LQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLL--NWASAFGTQEMVEF 100
N+ LQ +R AL+E + V ++ + G+T + + ++ Q ++F
Sbjct: 128 KYNVSRLQPYLKLRQ----ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Score = 27.5 bits (60), Expect = 1.2
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 16/60 (26%)
Query: 21 HCQAALNQEGNI--------EYKAH-TKTHKTF--KTSNILQLIE-----CIRSKDTDAL 64
H A N G+I YK + + + IL + I SK TD L
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 29.5 bits (66), Expect = 0.19
Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 45 KTSNILQLIECIRSKDTDALIETIDSGG-----VEVNFMDDVGQTLLNWASAF---GTQE 96
T +L I ++D +++E +G + + +L+ A +
Sbjct: 129 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP 188
Query: 97 MVEFLCERGADVNK 110
+V+F+ + G ++
Sbjct: 189 LVDFIIQNGGHLDA 202
Score = 26.4 bits (58), Expect = 2.7
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
G ++ G T L++A+ + + ++ L + A V
Sbjct: 197 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.68
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 16/73 (21%)
Query: 19 PSHCQAALNQ----EGNIEYKAHTKTHK-TF---KTSNILQLIECIRSKDTDAL-IETID 69
+ E ++KA TH F S + L ++ D + I
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKA---THILDFGPGGASGLGVLT----HRNKDGTGVRVIV 529
Query: 70 SGGVEVNFMDDVG 82
+G +++N DD G
Sbjct: 530 AGTLDINPDDDYG 542
Score = 26.9 bits (59), Expect = 1.7
Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 35/120 (29%)
Query: 18 QP-----SHCQ-AALNQEGNI------------EYKAHTKTHKTFKTSNILQLIECIRSK 59
QP L +G I EY A ++++++ R
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF-YRGM 1791
Query: 60 DTDALIETIDSGGVEVNFMDDVGQTLLNWAS--AFGTQEMVEFLCERGAD--------VN 109
+ D G + G +N A +QE ++++ ER VN
Sbjct: 1792 TMQVAVPR-DELG-----RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
>2y9m_B Peroxisome assembly protein 22; ligase-transport protein complex,
ubiquitin conjugating ENZY complex, peroxisomal protein;
2.60A {Saccharomyces cerevisiae} PDB: 2y9o_B 2y9p_B
Length = 130
Score = 27.2 bits (59), Expect = 0.89
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 5/89 (5%)
Query: 19 PSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALI-----ETIDSGGV 73
SH ++ Q ++ HK ++ L C+R I T G
Sbjct: 41 TSHTDGSMKQAIGDAFRKTKNEHKIIYCDSMDGLWSCVRRLGKFQCILNSRDFTSSGGSD 100
Query: 74 EVNFMDDVGQTLLNWASAFGTQEMVEFLC 102
+D+G+ + + +++ LC
Sbjct: 101 AAVVPEDIGRFVKFVVDSDVEDVLIDTLC 129
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1-
butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB;
1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A*
3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 2b6d_A*
2b65_A* 2doj_A* 2dp8_A* 2dqv_A* 2ds9_A* 2dsf_A* 2dvc_A*
2dwa_A* 2dwh_A* ...
Length = 335
Score = 26.7 bits (58), Expect = 1.6
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 53 IECIRSKDTDALIETIDSGGVEVNFMD 79
+ C + TD I + G + +D
Sbjct: 28 VTCATASTTDDCIVLVLKGEADALNLD 54
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 26.7 bits (59), Expect = 1.7
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 45 KTSNILQLIECIRSKDTDALIET 67
S+ ++L+EC++ K L++
Sbjct: 273 NVSDTVELVECLQKKPYKELVDQ 295
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 26.4 bits (59), Expect = 2.0
Identities = 5/36 (13%), Positives = 8/36 (22%), Gaps = 8/36 (22%)
Query: 81 VGQTLLNWASAFG--------TQEMVEFLCERGADV 108
+G + + E L GA
Sbjct: 157 IGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAY 192
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP
metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B
1suv_E
Length = 342
Score = 26.3 bits (57), Expect = 2.8
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 53 IECIRSKDTDALIETIDSGGVEVNFMD 79
IEC+ ++ T+ I I +G + +D
Sbjct: 29 IECVSAETTEDCIAKIMNGEADAMSLD 55
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase,
potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB:
2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Length = 351
Score = 26.0 bits (58), Expect = 3.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 93 GTQEMVEFLCERGADVNK 110
T EMVE L GAD+ K
Sbjct: 170 VTGEMVEELILSGADIIK 187
>1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein
complex, EXON junct complex, signaling protein; 1.85A
{Drosophila melanogaster} SCOP: d.232.1.1 PDB: 1rk8_B
2x1g_B 1hl6_B 2j0s_C* 2j0q_C* 2hyi_A* 2xb2_C* 3ex7_A*
1p27_A
Length = 147
Score = 25.4 bits (55), Expect = 3.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 40 THKTFKTSNILQLIECIRSKDTDAL 64
H +F TS L++ RSKD + L
Sbjct: 96 EHISFTTSKTGSLVDVNRSKDPEGL 120
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 25.8 bits (57), Expect = 3.9
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 45 KTSNILQLIECIRSKDTDALIET 67
N ++I+C+R+KD ++
Sbjct: 253 SRENETEIIKCLRNKDPQEILLN 275
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin,
conformational change; 2.00A {Homo sapiens} SCOP:
c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A
1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A
1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A
1i6q_A 1jw1_A ...
Length = 691
Score = 25.7 bits (55), Expect = 4.0
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 53 IECIRSKDTDALIETIDSGGVEVNFMD 79
+ C + T+ I + G + +D
Sbjct: 369 VTCSSASTTEDCIALVLKGEADAMSLD 395
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 25.8 bits (57), Expect = 4.1
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 45 KTSNILQLIECIRSKDTDALIET 67
++ +LI C+R K LI+
Sbjct: 255 NLNSDEELIHCLREKKPQELIDV 277
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate
structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP:
c.94.1.2 c.94.1.2 PDB: 1lfc_A
Length = 689
Score = 25.7 bits (55), Expect = 4.6
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 53 IECIRSKDTDALIETIDSGGVEVNFMD 79
+ C + TD I + G + +D
Sbjct: 369 VTCATASTTDDCIVLVLKGEADALNLD 395
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter,
transferrin R serum, metal transport; HET: P6G; 2.10A
{Homo sapiens} PDB: 3v8x_B* 3qyt_A* 3ve1_B 2hav_A*
3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Length = 698
Score = 25.7 bits (55), Expect = 4.9
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 53 IECIRSKDTDALIETIDSGGVEVNFMD 79
IEC+ ++ T+ I I +G + +D
Sbjct: 385 IECVSAETTEDCIAKIMNGEADAMSLD 411
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 25.4 bits (56), Expect = 5.5
Identities = 2/24 (8%), Positives = 9/24 (37%)
Query: 44 FKTSNILQLIECIRSKDTDALIET 67
++ ++ + + + L E
Sbjct: 258 ITATDPEEIHQKLIEMPAEKLNEA 281
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 25.1 bits (55), Expect = 5.9
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 45 KTSNILQLIECIRSKDTDALIET 67
KT+ ++ C+R K + L+ET
Sbjct: 257 KTTTSAVMVHCLRQKTEEELLET 279
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme,
structural genomics, JCS protein structure initiative,
PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3
PDB: 2hae_A*
Length = 388
Score = 24.8 bits (55), Expect = 7.4
Identities = 2/14 (14%), Positives = 7/14 (50%)
Query: 55 CIRSKDTDALIETI 68
C+ + + +I +
Sbjct: 115 CLSESEEEKIISIV 128
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase
(decarboxylating)); hypothetical protein, structural
genomics, PSI; 2.50A {Streptococcus pyogenes}
Length = 398
Score = 24.8 bits (55), Expect = 7.9
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 55 CIRSKDTDALIETI 68
+ +KDT+ +I +
Sbjct: 111 VLDTKDTEEIISIV 124
>2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B-
hydrolase fold, acyltransferase, acetyl coenzyme A,
antibiotic biosynthesis; HET: COA; 2.2A {Acremonium
chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A*
Length = 444
Score = 24.7 bits (54), Expect = 8.0
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 6 SKAIQTFDVGRYQPSHCQAALNQ 28
+ T D+ R + AL
Sbjct: 357 TLKFDTHDISRGRAGSIPEALAM 379
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Length = 361
Score = 24.9 bits (55), Expect = 8.2
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 94 TQEMVEFLCERGADVNK 110
T ++L GAD+ K
Sbjct: 151 TYAGADYLASCGADIIK 167
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides,
nucleotides, nucleo nucleoside interconversions, spine,
structural genomics; 1.80A {Bacillus anthracis} PDB:
2a1y_A*
Length = 336
Score = 24.5 bits (54), Expect = 8.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 93 GTQEMVEFLCERGADVNK 110
GT E V L GAD K
Sbjct: 158 GTPEAVRELENAGADATK 175
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 24.6 bits (54), Expect = 8.8
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 45 KTSNILQLIECIRSKDTDALIET 67
+ ++ C++ D AL
Sbjct: 247 PVDDTSKMAGCLKITDPRALTLA 269
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.375
Gapped
Lambda K H
0.267 0.0445 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,591,600
Number of extensions: 78629
Number of successful extensions: 584
Number of sequences better than 10.0: 1
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 317
Length of query: 113
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 36
Effective length of database: 4,551,876
Effective search space: 163867536
Effective search space used: 163867536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.1 bits)