RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2938
(113 letters)
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 50.3 bits (119), Expect = 3e-09
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 52 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
LI + K + ++ +E+N D G+T L A +++ E LC+RGA +
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280
Score = 36.1 bits (82), Expect = 4e-04
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 55 CIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-GADVNK 110
D +A+ + G +VN + G+T L A +V+ L E+ ++N
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248
Score = 32.6 bits (73), Expect = 0.005
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 82 GQTLLNWASAFGTQEMVEFLCERGADVN 109
LL A ++V+ L E GA+VN
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVN 32
Score = 31.5 bits (70), Expect = 0.014
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 75 VNFMDDVGQTLLNWASAFGTQEMVEFLC-ERGADVNK 110
+ G T L A+ G E+++ L E GADVN
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 177
Score = 30.3 bits (67), Expect = 0.035
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 52 LIECIRSKDTDALIETIDSGGVEVNFMDDV-GQTLLNWASAFGTQEMVEFLC 102
LI+ ++++D D L++ + GG VNF ++ G T L+ A +++VE L
Sbjct: 9 LIKAVQNEDVD-LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 45.0 bits (105), Expect = 3e-07
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G N + +T L+ A+ G E+ ++L + A VN
Sbjct: 23 GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61
Score = 39.6 bits (91), Expect = 2e-05
Identities = 14/102 (13%), Positives = 26/102 (25%)
Query: 9 IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETI 68
+ P H A + + + T + + E +
Sbjct: 92 PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 151
Query: 69 DSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
N G T L+ A ++V+ L RG +
Sbjct: 152 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS 193
Score = 38.4 bits (88), Expect = 6e-05
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 76 NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
N +G + L+ A+ G ++V L + GA N+
Sbjct: 324 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 358
Score = 38.4 bits (88), Expect = 7e-05
Identities = 17/92 (18%), Positives = 30/92 (32%)
Query: 19 PSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFM 78
P HC A + ++ + T+ + + + + M
Sbjct: 69 PLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACM 128
Query: 79 DDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G T L+ A+ +G + E L ER A N
Sbjct: 129 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNA 160
Score = 33.4 bits (75), Expect = 0.003
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 84 TLLNWASAFGTQEMVEFLCERGADVNK 110
T L+ AS G +V+ L +RGA N
Sbjct: 2 TPLHVASFMGHLPIVKNLLQRGASPNV 28
Score = 33.4 bits (75), Expect = 0.003
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 5/105 (4%)
Query: 9 IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQ-LIECIRSKDTDALIET 67
+ Y P H + +++ + KT L + + TD ++
Sbjct: 290 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD-IVTL 348
Query: 68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL---CERGADVN 109
+ G N + G T L A G + + L + + V
Sbjct: 349 LLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVL 393
Score = 31.1 bits (69), Expect = 0.018
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 75 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
N + G T L+ + G + + L + G V+
Sbjct: 257 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 292
Score = 29.9 bits (66), Expect = 0.048
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 52 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
L R+ T+ + + +VN QT L+ A+ G MV+ L E A+ N
Sbjct: 37 LHMAARAGHTEVAKYLLQNK-AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 93
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 44.3 bits (103), Expect = 5e-07
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 45 KTSNILQLIECIRSKDTDALIETIDSGGVEVNF-MDDVGQTLLNWASAFGTQEMVEFLCE 103
S+ Q + + + + +N +D+ G T L+W ++ E+V+ L +
Sbjct: 69 GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 128
Query: 104 RGADVNK 110
G++
Sbjct: 129 HGSNRLY 135
Score = 43.9 bits (102), Expect = 8e-07
Identities = 16/95 (16%), Positives = 30/95 (31%)
Query: 15 GRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVE 74
G + + ++ + T + + R ++
Sbjct: 192 GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM 251
Query: 75 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+N D G T LN A+ G +V+ L + GAD
Sbjct: 252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 286
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 40.5 bits (93), Expect = 1e-05
Identities = 11/96 (11%), Positives = 24/96 (25%)
Query: 15 GRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVE 74
G + E + + + + +++E + G +
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 75 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
G+T L A + L GA +
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253
Score = 37.4 bits (85), Expect = 1e-04
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 76 NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++ + G T L+ A + ++FL A
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE 36
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 40.1 bits (92), Expect = 1e-05
Identities = 13/59 (22%), Positives = 26/59 (44%)
Query: 52 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
L + + + + G + D+ G+T + A+ G E+V +L ++GA V
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA 249
Score = 36.3 bits (82), Expect = 4e-04
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 56 IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC--------ERGAD 107
+ + A+ E I V + +T+L+W ++ + E E L GAD
Sbjct: 8 TEAAGSYAITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 66
Query: 108 VN 109
VN
Sbjct: 67 VN 68
Score = 30.9 bits (68), Expect = 0.025
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFL 101
G V +D T A A +V+
Sbjct: 244 GASVEAVDATDHTARQLAQANNHHNIVDIF 273
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 38.3 bits (88), Expect = 6e-05
Identities = 6/48 (12%), Positives = 13/48 (27%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 111
+ + + V + A+ G ++ LCE
Sbjct: 108 TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA 155
Score = 32.6 bits (73), Expect = 0.005
Identities = 5/74 (6%), Positives = 17/74 (22%), Gaps = 3/74 (4%)
Query: 40 THKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQ---E 96
H + ++ + + + + + + A+ G +
Sbjct: 48 IHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALD 107
Query: 97 MVEFLCERGADVNK 110
+ L V
Sbjct: 108 TLCLLLTSDEIVKV 121
Score = 26.0 bits (56), Expect = 1.3
Identities = 5/36 (13%), Positives = 10/36 (27%)
Query: 74 EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ + A+ G ++ LCE
Sbjct: 153 IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA 188
Score = 25.2 bits (54), Expect = 2.0
Identities = 6/33 (18%), Positives = 7/33 (21%)
Query: 69 DSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL 101
+ LL A G Q L
Sbjct: 304 IKALAPTATIPGDANELLRLALRLGNQGACALL 336
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 38.5 bits (88), Expect = 6e-05
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 73 VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+VN D G T L+ A+ +G +E L E D+
Sbjct: 223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME 259
Score = 33.9 bits (76), Expect = 0.002
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ ++ +TD + +V F D + A + G E V L ERGAD+N
Sbjct: 12 EQLKRWIGSETDLEPPVVKRKKTKVKFDDG---AVFLAACSSGDTEEVLRLLERGADINY 68
Score = 25.5 bits (54), Expect = 1.9
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 52 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER 104
+ S DT+ ++ ++ G ++N+ + G T L+ A +MV+FL E
Sbjct: 44 FLAACSSGDTEEVLRLLERG-ADINYANVDGLTALHQACIDDNVDMVKFLVEN 95
Score = 24.3 bits (51), Expect = 4.7
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
++ ++ VGQT + A ++++ +L E N
Sbjct: 255 LCDMEAVNKVGQTAFDVAD----EDILGYLEELQKKQN 288
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 37.3 bits (85), Expect = 1e-04
Identities = 17/91 (18%), Positives = 35/91 (38%)
Query: 19 PSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFM 78
H + +E+ K + S D +++ + G +VN +
Sbjct: 40 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 99
Query: 79 DDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ G T L++A++ E+ L E GA+ +
Sbjct: 100 NQNGCTPLHYAASKNRHEIAVMLLEGGANPD 130
Score = 33.8 bits (76), Expect = 0.002
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 46 TSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC 102
SN++ + S + L E+I + D +T L+WA + G E+VEFL
Sbjct: 2 VSNLM-VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 57
Score = 32.6 bits (73), Expect = 0.006
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 75 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
N D G T L+ A E + L +GA +
Sbjct: 162 TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI 197
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 36.1 bits (82), Expect = 2e-04
Identities = 11/72 (15%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 46 TSNILQLIECIRSKDTDALIETIDSG-----GVEVNFMDDVGQTLLNWASAF---GTQEM 97
+ + L E ++++D L++ G + + + +T L+ A + +
Sbjct: 4 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 63
Query: 98 VEFLCERGADVN 109
V+FL + +++
Sbjct: 64 VDFLVQNSGNLD 75
Score = 35.7 bits (81), Expect = 3e-04
Identities = 10/92 (10%), Positives = 27/92 (29%), Gaps = 3/92 (3%)
Query: 19 PSHCQAALNQEGNIE---YKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEV 75
H ++ + + +T + D ++ + G +
Sbjct: 48 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 107
Query: 76 NFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
++ G+T L+ A + E L + +
Sbjct: 108 EIANESGETPLDIAKRLKHEHCEELLTQALSG 139
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 35.6 bits (80), Expect = 5e-04
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 66 ETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ + G VN G + L+ AS G +V L GAD +
Sbjct: 161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 204
Score = 31.0 bits (68), Expect = 0.020
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 82 GQTLLNWASAFGTQEMVEFLC----ERGADVNK 110
G T L+ A G V L + G +++
Sbjct: 3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI 35
Score = 27.9 bits (60), Expect = 0.23
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 52 LIECIRSKDTDA---LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV 108
L + + A L+ GG E++ +++ QT L+ A +V L GA
Sbjct: 7 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 66
Query: 109 N 109
Sbjct: 67 M 67
Score = 26.0 bits (55), Expect = 1.1
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMV 98
G + + + T L A + +++
Sbjct: 200 GADSSLKNCHNDTPLMVARSRRVIDIL 226
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 35.2 bits (79), Expect = 6e-04
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 55 CIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
+ DA + ++ G E + +D+ G + A +++ +F D
Sbjct: 179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228
Score = 34.8 bits (78), Expect = 0.001
Identities = 11/54 (20%), Positives = 22/54 (40%)
Query: 52 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG 105
L + + + E + S + D G+ L+W+ +F E+ FL +
Sbjct: 4 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 32.9 bits (73), Expect = 0.004
Identities = 5/36 (13%), Positives = 13/36 (36%)
Query: 72 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
G +VN + G + + + + L + +
Sbjct: 168 GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203
Score = 31.0 bits (68), Expect = 0.019
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 82 GQTLLNWASAFG----TQEMVEFLCERGADVNK 110
G + L+ A T E++ + A +N
Sbjct: 2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF 34
Score = 25.2 bits (53), Expect = 2.2
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC 102
+I + +NF +++ QT L+ A E+ E L
Sbjct: 21 VIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 59
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 32.5 bits (72), Expect = 0.006
Identities = 10/89 (11%), Positives = 25/89 (28%)
Query: 13 DVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGG 72
D H AA+N + ++ + + + + + +
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF 179
Query: 73 VEVNFMDDVGQTLLNWASAFGTQEMVEFL 101
D + + + AS ++V L
Sbjct: 180 ANREITDHMDRLPRDVASERLHHDIVRLL 208
Score = 30.9 bits (68), Expect = 0.023
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 76 NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
+ DD +T L A+ G+ E + L + A+
Sbjct: 150 DAQDDKDETPLFLAAREGSYEASKALLDNFANRE 183
Score = 29.0 bits (63), Expect = 0.10
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 64 LIETIDSGGVEVNF-MDDVGQTLLNWASAFGTQEMVEFLC 102
+I + + G E+N MD G+T L+ A+ F + + L
Sbjct: 4 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLL 43
Score = 28.2 bits (61), Expect = 0.19
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 94 TQEMVEFLCERGADVN 109
T +++ L +GA++N
Sbjct: 1 TAQVISDLLAQGAELN 16
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 31.8 bits (70), Expect = 0.009
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 86 LNWASAFGTQEMVEFLCERGADVNK 110
L A+A G E + L + +VN
Sbjct: 5 LASAAARGDLEQLTSLLQNNVNVNA 29
Score = 31.0 bits (68), Expect = 0.017
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 75 VNFMDDVGQTLLNWASAFGTQEMVEFLCERG 105
V + G T + A +G E+V + G
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQANG 156
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 31.4 bits (69), Expect = 0.013
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 80 DVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
D+G+ LL A+ G + V L GA
Sbjct: 1 DLGKKLL-EAARAGQDDEVRILMANGAPFTT 30
Score = 29.4 bits (64), Expect = 0.064
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 64 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL 101
++E + G +V+ +T + + G +++ E L
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 130
Score = 29.6 bits (65), Expect = 0.047
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 84 TLLNWASAFGTQEMVEFLCERGADVNK 110
LL +S G ++V+ + D +
Sbjct: 3 ALLLDSSLEGEFDLVQRIIYEVDDPSL 29
Score = 23.1 bits (48), Expect = 8.9
Identities = 6/40 (15%), Positives = 9/40 (22%), Gaps = 3/40 (7%)
Query: 72 GVEVNFMDDVGQ---TLLNWASAFGTQEMVEFLCERGADV 108
G V M G + +FL +
Sbjct: 90 GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 129
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 29.2 bits (63), Expect = 0.074
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 80 DVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
+ L A+A G E V L E GA+ N
Sbjct: 1 EPSADWLATAAARGRVEEVRALLEAGANPNA 31
Score = 26.8 bits (57), Expect = 0.44
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 76 NFMDDVGQTLLNWASAFGTQEMVEFL 101
+ D G+ ++ A G +++ +L
Sbjct: 96 DVRDAWGRLPVDLAEELGHRDVARYL 121
>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 141
Score = 28.5 bits (64), Expect = 0.12
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 28 QEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDAL 64
QE I H +F TS L++ RSKD + L
Sbjct: 84 QELEIVIG---DEHISFTTSKTGSLVDVNRSKDPEGL 117
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 28.2 bits (61), Expect = 0.18
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 74 EVNFMDDVGQTLLNWASAFGTQEMVEFL 101
+++ D G T L A G Q++V+ L
Sbjct: 125 DLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 24.0 bits (50), Expect = 4.7
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 82 GQTLLNWASAFGTQEMVEFLCER-GADVNK 110
G L A+A G + V L R +
Sbjct: 3 GDRLS-GAAARGDVQEVRRLLHRELVHPDA 31
>d1eh3a_ c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 324
Score = 27.4 bits (60), Expect = 0.39
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 53 IECIRSKDTDALIETIDSGGVEVNFMD 79
+ CI+ I+ I + +D
Sbjct: 31 VSCIKRDSPIQCIQAIAENRADAVTLD 57
>d2b6da1 c.94.1.2 (A:342-685) Lactoferrin {Cow (Bos taurus)
[TaxId: 9913]}
Length = 344
Score = 27.0 bits (59), Expect = 0.49
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 53 IECIRSKDTDALIETIDSGGVEVNFMD 79
+ C + TD I + G + +D
Sbjct: 28 VTCATASTTDDCIVLVLKGEADALNLD 54
>d1ce2a1 c.94.1.2 (A:1-333) Lactoferrin {Domestic water buffalo
(Bubalus arnee bubalis) [TaxId: 89462]}
Length = 333
Score = 26.9 bits (59), Expect = 0.58
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 53 IECIRSKDTDALIETIDSGGVEVNFMD 79
I C+R I I + +D
Sbjct: 34 ITCVRRASVLECIRAITEKKADAVTLD 60
>d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 325
Score = 26.2 bits (57), Expect = 1.0
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 53 IECIRSKDTDALIETIDSGGVEVNFMD 79
IEC+ ++ T+ I I +G + +D
Sbjct: 27 IECVSAETTEDCIAKIMNGEADAMSLD 53
>d1h76a2 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 346
Score = 25.9 bits (56), Expect = 1.5
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 53 IECIRSKDTDALIETIDSGGVEVNFMD 79
IEC+ +++T+ I I G + +D
Sbjct: 29 IECVSAENTEDCIAKIVKGEADAMSLD 55
>d2d3ia2 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 352
Score = 24.6 bits (53), Expect = 2.9
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 53 IECIRSKDTDALIETIDSGGVEVNFMD 79
+EC +T I I G + +D
Sbjct: 35 VECTVVDETKDCIIKIMKGEADAVALD 61
>d1ryoa_ c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 324
Score = 24.6 bits (53), Expect = 3.7
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 53 IECIRSKDTDALIETIDSGGVEVNFMD 79
+ C++ I I + + +D
Sbjct: 34 VACVKKASYLDCIRAIAANEADAVTLD 60
>d5csma_ a.130.1.2 (A:) Allosteric chorismate mutase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 256
Score = 23.9 bits (52), Expect = 5.1
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 53 IECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGT 94
+ I+SKD + +++ I + VE + + + L A +G
Sbjct: 177 TKLIKSKDVEGIMKNITNSAVE----EKILERLTKKAEVYGV 214
>d1ieja_ c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 329
Score = 23.9 bits (51), Expect = 6.3
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 53 IECIRSKDTDALIETIDSGGVEVNFMD 79
+ C++ I+ I + + +D
Sbjct: 31 LTCVQKATYLDCIKAIANNEADAITLD 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.130 0.375
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 382,388
Number of extensions: 14273
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 66
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)