BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy294
(416 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 9/113 (7%)
Query: 49 ISFEDVLK-HAYSVLDVRDM--DGTR--LLQLRNPWGHFSWKGDWSDDSNLWT---PELR 100
I+F+++++ HAYSV D + + G R L+++RNPWG WKG WSD+S W P R
Sbjct: 253 ITFKNLVRGHAYSVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYER 312
Query: 101 ATLMPRGASDGVFWISFEDVLKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGT 153
L + DG FW+SF D ++ F ++IC + WN GT
Sbjct: 313 EQLRVK-MEDGEFWMSFRDFIREFTKLEICNLTPDALKSRTLRNWNTTFYEGT 364
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 6 LLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKHAYSVL 62
L+++RNPWG WKG WSD+S W P R L + DG FW+SF D ++ ++ L
Sbjct: 281 LIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVK-MEDGEFWMSFRDFIRE-FTKL 338
Query: 63 DVRDM--DGTRLLQLRNPWGHFSWKGDW 88
++ ++ D + LRN W ++G W
Sbjct: 339 EICNLTPDALKSRTLRN-WNTTFYEGTW 365
>pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|A Chain A, Structure Of M-Calpain In Complex With Calpastatin
Length = 714
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 9/113 (7%)
Query: 49 ISFEDVLK-HAYSVLDVRDMDGT----RLLQLRNPWGHFSWKGDWSDDSNLWT---PELR 100
++++ ++K HAYSV +++ + +L+++RNPWG W G W+D+ W PE+R
Sbjct: 253 VTYQKLVKGHAYSVTGAEEVESSGSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVR 312
Query: 101 ATLMPRGASDGVFWISFEDVLKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGT 153
A L R DG FW+SF D L+++ ++IC + + W ++ G
Sbjct: 313 ANLTER-QEDGEFWMSFSDFLRHYSRLEICNLTPDTLTCDSYKKWKLTKMDGN 364
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 5 RLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKHAYSV 61
+L+++RNPWG W G W+D+ W PE+RA L R DG FW+SF D L+H YS
Sbjct: 280 KLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTER-QEDGEFWMSFSDFLRH-YSR 337
Query: 62 LDV 64
L++
Sbjct: 338 LEI 340
>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
Length = 700
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 9/113 (7%)
Query: 49 ISFEDVLK-HAYSVLDVRDMDGT----RLLQLRNPWGHFSWKGDWSDDSNLWT---PELR 100
++++ ++K HAYSV +++ + +L+++RNPWG W G W+D+ W PE+R
Sbjct: 253 VTYQKLVKGHAYSVTGAEEVESSGSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVR 312
Query: 101 ATLMPRGASDGVFWISFEDVLKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGT 153
A L R DG FW+SF D L+++ ++IC + + W ++ G
Sbjct: 313 ANLTER-QEDGEFWMSFSDFLRHYSRLEICNLTPDTLTCDSYKKWKLTKMDGN 364
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 5 RLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKHAYSV 61
+L+++RNPWG W G W+D+ W PE+RA L R DG FW+SF D L+H YS
Sbjct: 280 KLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTER-QEDGEFWMSFSDFLRH-YSR 337
Query: 62 LDV 64
L++
Sbjct: 338 LEI 340
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
Length = 700
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 9/113 (7%)
Query: 49 ISFEDVLK-HAYSVLDVRDMDGT----RLLQLRNPWGHFSWKGDWSDDSNLWT---PELR 100
++++ ++K HAYSV +++ + +L+++RNPWG W G W+D+ W PE+R
Sbjct: 253 VTYQKLVKGHAYSVTGAEEVESSGSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVR 312
Query: 101 ATLMPRGASDGVFWISFEDVLKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGT 153
A L R DG FW+SF D L+++ ++IC + + W ++ G
Sbjct: 313 ANLTER-QEDGEFWMSFSDFLRHYSRLEICNLTPDTLTCDSYKKWKLTKMDGN 364
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 5 RLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKHAYSV 61
+L+++RNPWG W G W+D+ W PE+RA L R DG FW+SF D L+H YS
Sbjct: 280 KLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTER-QEDGEFWMSFSDFLRH-YSR 337
Query: 62 LDV 64
L++
Sbjct: 338 LEI 340
>pdb|1MDW|A Chain A, Crystal Structure Of Calcium-bound Protease Core Of
Calpain Ii Reveals The Basis For Intrinsic Inactivation
pdb|1MDW|B Chain B, Crystal Structure Of Calcium-bound Protease Core Of
Calpain Ii Reveals The Basis For Intrinsic Inactivation
Length = 328
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 9/92 (9%)
Query: 49 ISFEDVLK-HAYSVLDVRDMDGT----RLLQLRNPWGHFSWKGDWSDDSNLWT---PELR 100
++++ ++K HAYSV +++ + +L+++RNPWG W G W+D+ W PE+R
Sbjct: 235 VTYQKLVKGHAYSVTGAEEVESSGSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVR 294
Query: 101 ATLMPRGASDGVFWISFEDVLKYFDCIDICKV 132
A L R DG FW+SF D L+++ ++IC +
Sbjct: 295 ANLTER-QEDGEFWMSFSDFLRHYSRLEICNL 325
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 5 RLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKHAYSV 61
+L+++RNPWG W G W+D+ W PE+RA L R DG FW+SF D L+H YS
Sbjct: 262 KLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTER-QEDGEFWMSFSDFLRH-YSR 319
Query: 62 LDVRDM 67
L++ ++
Sbjct: 320 LEICNL 325
>pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
Length = 699
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 9/113 (7%)
Query: 49 ISFEDVLK-HAYSVLDVRDMDGT----RLLQLRNPWGHFSWKGDWSDDSNLWT---PELR 100
I+F+ ++K HAYSV +++ +L+++RNPWG W G W+D+ W PE R
Sbjct: 252 ITFQKLVKGHAYSVTGAEEVESNGSLQKLIRIRNPWGEVEWTGRWNDNCPSWNTIDPEER 311
Query: 101 ATLMPRGASDGVFWISFEDVLKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGT 153
L R DG FW+SF D L+++ ++IC + + W ++ G
Sbjct: 312 ERLTRR-HEDGEFWMSFSDFLRHYSRLEICNLTPDTLTSDTYKKWKLTKMDGN 363
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 5 RLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKHAYSV 61
+L+++RNPWG W G W+D+ W PE R L R DG FW+SF D L+H YS
Sbjct: 279 KLIRIRNPWGEVEWTGRWNDNCPSWNTIDPEERERLTRR-HEDGEFWMSFSDFLRH-YSR 336
Query: 62 LDV 64
L++
Sbjct: 337 LEI 339
>pdb|1KXR|A Chain A, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
pdb|1KXR|B Chain B, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
Length = 339
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 9/92 (9%)
Query: 49 ISFEDVLK-HAYSVLDVRDM--DGTR--LLQLRNPWGHFSWKGDWSDDSNLWT---PELR 100
I+F+++++ HAYSV D + + G R L+++RNPWG WKG WSD+S W P R
Sbjct: 238 ITFKNLVRGHAYSVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYER 297
Query: 101 ATLMPRGASDGVFWISFEDVLKYFDCIDICKV 132
L + DG FW+SF D ++ F ++IC +
Sbjct: 298 EQLRVK-MEDGEFWMSFRDFIREFTKLEICNL 328
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 4 TRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKH 57
L+++RNPWG WKG WSD+S W P R L + DG FW+SF D ++
Sbjct: 264 VNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVK-MEDGEFWMSFRDFIRE 319
>pdb|1TL9|A Chain A, High Resolution Crystal Structure Of Calpain I Protease
Core In Complex With Leupeptin
pdb|1TLO|A Chain A, High Resolution Crystal Structure Of Calpain I Protease
Core In Complex With E64
pdb|2G8E|A Chain A, Calpain 1 Proteolytic Core In Complex With Snj-1715, A
Cyclic Hemiacetal-Type Inhibitor
pdb|2G8J|A Chain A, Calpain 1 Proteolytic Core In Complex With Snj-1945, A
Alpha-Ketoamide-Type Inhibitor.
pdb|2NQG|A Chain A, Calpain 1 Proteolytic Core Inactivated By Wr18(s,s), An
Epoxysuccinyl-type Inhibitor.
pdb|2NQI|A Chain A, Calpain 1 Proteolytic Core Inactivated By Wr13(R,R), An
Epoxysuccinyl-Type Inhibitor.
pdb|2R9C|A Chain A, Calpain 1 Proteolytic Core Inactivated By Zlak-3001, An
Alpha- Ketoamide
pdb|2R9F|A Chain A, Calpain 1 Proteolytic Core Inactivated By Zlak-3002, An
Alpha- Ketoamide
Length = 339
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 9/92 (9%)
Query: 49 ISFEDVLK-HAYSVLDVRDM--DGTR--LLQLRNPWGHFSWKGDWSDDSNLWT---PELR 100
I+F+++++ HAYSV D + + G R L+++RNPWG WKG WSD+S W P R
Sbjct: 238 ITFKNLVRGHAYSVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYER 297
Query: 101 ATLMPRGASDGVFWISFEDVLKYFDCIDICKV 132
L + DG FW+SF D ++ F ++IC +
Sbjct: 298 EQLRVK-MEDGEFWMSFRDFIREFTKLEICNL 328
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 4 TRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKH 57
L+++RNPWG WKG WSD+S W P R L + DG FW+SF D ++
Sbjct: 264 VNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVK-MEDGEFWMSFRDFIRE 319
>pdb|2P0R|A Chain A, Structure Of Human Calpain 9 In Complex With Leupeptin
pdb|2P0R|B Chain B, Structure Of Human Calpain 9 In Complex With Leupeptin
Length = 333
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 40 RGASDGVFWISFEDVLKHAYSV--LDVRDMDGTR--LLQLRNPWGHFSWKGDWSDDSNLW 95
R A++ F + HAYSV +D G R L+++RNPWG W G WSD S W
Sbjct: 230 RSAAESEARTPFGLIKGHAYSVTGIDQVSFRGQRIELIRIRNPWGQVEWNGSWSDSSPEW 289
Query: 96 T---PELRATLMPRGASDGVFWISFEDVLKYFDCIDICKV 132
P + L DG FW++F+D +FD ++IC +
Sbjct: 290 RSVGPAEQKRLCHTALDDGEFWMAFKDFKAHFDKVEICNL 329
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 5 RLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKH 57
L+++RNPWG W G WSD S W P + L DG FW++F+D H
Sbjct: 265 ELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAFKDFKAH 320
>pdb|1ZIV|A Chain A, Catalytic Domain Of Human Calpain-9
Length = 339
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 40 RGASDGVFWISFEDVLKHAYSV--LDVRDMDGTR--LLQLRNPWGHFSWKGDWSDDSNLW 95
R A++ F + HAYSV +D G R L+++RNPWG W G WSD S W
Sbjct: 229 RSAAESEARTPFGLIKGHAYSVTGIDQVSFRGQRIELIRIRNPWGQVEWNGSWSDSSPEW 288
Query: 96 T---PELRATLMPRGASDGVFWISFEDVLKYFDCIDICKV 132
P + L DG FW++F+D +FD ++IC +
Sbjct: 289 RSVGPAEQKRLCHTALDDGEFWMAFKDFKAHFDKVEICNL 328
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 5 RLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKH 57
L+++RNPWG W G WSD S W P + L DG FW++F+D H
Sbjct: 264 ELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAFKDFKAH 319
>pdb|2NQA|A Chain A, Catalytic Domain Of Human Calpain 8
pdb|2NQA|B Chain B, Catalytic Domain Of Human Calpain 8
Length = 326
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 54 VLKHAYSVLDVRDMD----GTRLLQLRNPWGHFSWKGDWSDDSNLWT--PELRATLMPRG 107
V HAYSV V +++ +L++LRNPWG W G WSDD+ W R + +
Sbjct: 239 VKSHAYSVTGVEEVNFQGHPEKLIRLRNPWGEVEWSGAWSDDAPEWNHIDPRRKEELDKK 298
Query: 108 ASDGVFWISFEDVLKYFDCIDICKV 132
DG FW+S D ++ F ++IC +
Sbjct: 299 VEDGEFWMSLSDFVRQFSRLEICNL 323
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 5 RLLQLRNPWGHFSWKGDWSDDSNLWT--PELRATLMPRGASDGVFWISFEDVLKHAYSVL 62
+L++LRNPWG W G WSDD+ W R + + DG FW+S D ++ +S L
Sbjct: 260 KLIRLRNPWGEVEWSGAWSDDAPEWNHIDPRRKEELDKKVEDGEFWMSLSDFVRQ-FSRL 318
Query: 63 DV 64
++
Sbjct: 319 EI 320
>pdb|2ARY|A Chain A, Catalytic Domain Of Human Calpain-1
pdb|2ARY|B Chain B, Catalytic Domain Of Human Calpain-1
Length = 351
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 49 ISFEDVLK-HAYSVLDVRDMDG----TRLLQLRNPWGHFSWKGDWSDDSNLWT---PELR 100
I+F+ ++K HAYSV + ++ L+++RNPWG W G WSD S+ W P R
Sbjct: 254 ITFKKLVKGHAYSVTGAKQVNYRGQVVSLIRMRNPWGEVEWTGAWSDSSSEWNNVDPYER 313
Query: 101 ATLMPRGASDGVFWISFEDVLKYFDCIDICKV 132
L + DG FW+SF D ++ F ++IC +
Sbjct: 314 DQLRVK-MEDGEFWMSFRDFMREFTRLEICNL 344
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 6 LLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKH 57
L+++RNPWG W G WSD S+ W P R L + DG FW+SF D ++
Sbjct: 282 LIRMRNPWGEVEWTGAWSDSSSEWNNVDPYERDQLRVK-MEDGEFWMSFRDFMRE 335
>pdb|1ZCM|A Chain A, Human Calpain Protease Core Inhibited By Zllych2f
Length = 321
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 49 ISFEDVLK-HAYSVLDVRDMDG----TRLLQLRNPWGHFSWKGDWSDDSNLWT---PELR 100
I+F+ ++K HAYSV + ++ L+++RNPWG W G WSD S+ W P R
Sbjct: 231 ITFKKLVKGHAYSVTGAKQVNYRGQVVSLIRMRNPWGEVEWTGAWSDSSSEWNNVDPYER 290
Query: 101 ATLMPRGASDGVFWISFEDVLKYFDCIDICKV 132
L + DG FW+SF D ++ F ++IC +
Sbjct: 291 DQLRVK-MEDGEFWMSFRDFMREFTRLEICNL 321
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 6 LLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKH 57
L+++RNPWG W G WSD S+ W P R L + DG FW+SF D ++
Sbjct: 259 LIRMRNPWGEVEWTGAWSDSSSEWNNVDPYERDQLRVK-MEDGEFWMSFRDFMRE 312
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 21/88 (23%)
Query: 247 YPEYLLAIHSSKPVLVEQIE-----PSEYILADTIISLTLAKGQRHEGRERMTAYYLTTG 301
YP+ LLA PVL IE PSE + D ++ LA G + RM A+Y
Sbjct: 37 YPDDLLA-----PVLRALIEKTNLNPSE--VGDIVVGTVLAPGSQRASECRMAAFY---- 85
Query: 302 WAGLVVMVENRYENRWIHVRCDCGIFWV 329
AG V R NR +C G+ V
Sbjct: 86 -AGFPETVAVRTVNR----QCSSGLQAV 108
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 21/88 (23%)
Query: 247 YPEYLLAIHSSKPVLVEQIE-----PSEYILADTIISLTLAKGQRHEGRERMTAYYLTTG 301
YP+ LLA PVL IE PSE + D ++ LA G + RM A+Y
Sbjct: 54 YPDDLLA-----PVLRALIEKTNLNPSE--VGDIVVGTVLAPGSQRASECRMAAFY---- 102
Query: 302 WAGLVVMVENRYENRWIHVRCDCGIFWV 329
AG V R NR +C G+ V
Sbjct: 103 -AGFPETVAVRTVNR----QCSSGLQAV 125
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 289 GRERMTAYYLTTGWAGLVVMVENRYENRWIHVRCDCG--------IFWVFCDCHQSYNVV 340
G + +A Y T+G +GL M E+ Y + + + D G I W D N++
Sbjct: 204 GSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNIL 263
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 289 GRERMTAYYLTTGWAGLVVMVENRYENRWIHVRCDCG--------IFWVFCDCHQSYNVV 340
G + +A Y T+G +GL M E+ Y + + + D G I W D N++
Sbjct: 204 GSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNIL 263
>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-1
Length = 406
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 235 NHWHTGISDTAQYPEYLLAIHSSKPVLVEQIEPSEYILADTIISLTLAKGQRHEGRERMT 294
N H G+ T +P+Y + LVE +E +L ++ + L +G + EG
Sbjct: 236 NEQHLGVKHTTLHPQYDPNTFENDVALVELLESP--VLNAFVMPICLPEGPQQEG----- 288
Query: 295 AYYLTTGWA 303
A + +GW
Sbjct: 289 AMVIVSGWG 297
>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1
pdb|4DJZ|B Chain B, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
pdb|4DJZ|D Chain D, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 251
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 235 NHWHTGISDTAQYPEYLLAIHSSKPVLVEQIEPSEYILADTIISLTLAKGQRHEGRERMT 294
N H G+ T +P+Y + LVE +E +L ++ + L +G + EG
Sbjct: 81 NEQHLGVKHTTLHPQYDPNTFENDVALVELLESP--VLNAFVMPICLPEGPQQEG----- 133
Query: 295 AYYLTTGWA 303
A + +GW
Sbjct: 134 AMVIVSGWG 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.469
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,922,317
Number of Sequences: 62578
Number of extensions: 598033
Number of successful extensions: 1041
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 982
Number of HSP's gapped (non-prelim): 37
length of query: 416
length of database: 14,973,337
effective HSP length: 101
effective length of query: 315
effective length of database: 8,652,959
effective search space: 2725682085
effective search space used: 2725682085
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)