Query psy294
Match_columns 416
No_of_seqs 300 out of 1415
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 21:28:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy294.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/294hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0045|consensus 100.0 5E-31 1.1E-35 278.1 16.7 334 48-413 239-610 (612)
2 smart00230 CysPc Calpain-like 99.8 2.9E-19 6.3E-24 177.2 6.7 87 49-135 221-312 (318)
3 PF00648 Peptidase_C2: Calpain 99.7 4.4E-18 9.6E-23 167.4 5.7 85 49-133 207-298 (298)
4 cd00214 Calpain_III Calpain, s 99.7 2.8E-16 6.1E-21 139.5 12.5 113 144-264 2-149 (150)
5 cd00044 CysPc Calpains, domain 99.6 1.7E-16 3.8E-21 157.3 6.8 84 48-131 228-315 (315)
6 smart00720 calpain_III calpain 99.6 2.9E-15 6.4E-20 131.7 12.1 95 160-262 26-142 (143)
7 smart00230 CysPc Calpain-like 99.6 1.9E-15 4.2E-20 150.0 4.8 66 4-70 244-312 (318)
8 PF01067 Calpain_III: Calpain 99.5 1E-13 2.3E-18 121.9 12.2 111 145-263 2-147 (147)
9 PF00648 Peptidase_C2: Calpain 99.5 5.4E-15 1.2E-19 145.5 3.8 64 3-67 231-297 (298)
10 cd00044 CysPc Calpains, domain 99.4 9.5E-14 2.1E-18 137.8 5.6 63 3-66 251-315 (315)
11 KOG0045|consensus 99.4 1.5E-13 3.3E-18 145.9 3.1 85 4-89 265-353 (612)
12 TIGR03853 matur_matur probable 24.4 84 0.0018 24.6 2.9 35 261-295 34-69 (77)
13 PHA02872 EFc gene family prote 21.3 1E+02 0.0022 25.8 3.0 47 291-340 60-119 (124)
No 1
>KOG0045|consensus
Probab=99.97 E-value=5e-31 Score=278.05 Aligned_cols=334 Identities=21% Similarity=0.268 Sum_probs=236.8
Q ss_pred eeeeeeeeeeceeeeeeeecCc----eeeecccCCCCcceecCcCCCCCCCCCH---HHHHhhCCCCCCCCceeeehhhh
Q psy294 48 WISFEDVLKHAYSVLDVRDMDG----TRLLQLRNPWGHFSWKGDWSDDSNLWTP---ELRATLMPRGASDGVFWISFEDV 120 (416)
Q Consensus 48 Wms~~df~~haYsvl~v~~~~~----~~Ll~lrnpWg~~~w~G~Ws~~s~~W~~---~~~~~l~~~~~~dG~FWMs~~Df 120 (416)
-+..++..+|||++++++.+.+ ++|+++|||||..+|+|.|++++++|.. ..+..+..+..+||+|||+++||
T Consensus 239 ~~~~gL~~~HaYsit~~~~~~~~~~~~~lirlrNPwg~~~W~G~wsd~~~~W~~v~~~~~~~~~~~~~~dGeFWms~~dF 318 (612)
T KOG0045|consen 239 KLRNGLVKGHAYAITDVREVQGRGGKHRLIRLRNPWGESEWNGPWSDGSEEWHLVDKSKLSELGRQPLDDGEFWMSFDDF 318 (612)
T ss_pred HhhcCccccccEEEEEEEEeecccccceeEEecCCcCCceeccccccCCcchhhhCHHHHhhcccccccCCCeeeeHHHH
Confidence 4566889999999999999999 9999999999999999999999999984 44444444457899999999999
Q ss_pred hcccceEEEEeeecCCCCCCCcceeeeEeeeccC--CCCC----------CCCcceeEEEEEecCCc----eeEeeeecc
Q psy294 121 LKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGTL--PPLC----------SVRHLSCVLLTVLEPTE----AEFTLFQEG 184 (416)
Q Consensus 121 ~~~F~~l~ic~~~p~~~~~~~~~~W~e~~~~g~~--~~~~----------~~~~~~~~~l~v~ep~e----~~~~L~Q~~ 184 (416)
+++|+.++||+++++.........|......|.| ..+. +...|+++.+.+.++++ +.+.|+|++
T Consensus 319 ~~~F~~~~vC~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~t~ggc~~~~~tF~~npq~~~~~~~~~~~~~~~v~~~~q~~ 398 (612)
T KOG0045|consen 319 LREFDSLTVCRLRPDWLESRNQLQWVKLSLDGEWELARGVTAGGCRNSVDTFDRNPQYILAVRKPTKSLCAVVLALFQKT 398 (612)
T ss_pred HhhCCeEeecCCCcchhhhhheeeeeeeecCCccceeecccCCCCccCcccccCCceEEEEecCCCccceEEEEEeeccc
Confidence 9999999999999876544443478888888888 3222 23468999999998874 456789999
Q ss_pred cccccccCCCCCceEEEEEecCCC-CCc--------------cccEEeeeEeecCCcEEEEEeeecccccCcCCCCCCCC
Q psy294 185 QRNWEKSKRSPLDLCVVILRNKLS-STS--------------VRGFVGCHKMLERDIYLVVCLAFNHWHTGISDTAQYPE 249 (416)
Q Consensus 185 ~r~~~~~~~~~~~ig~~v~r~~~~-~~~--------------v~~~v~~~~~LepG~YvVVp~tf~~~~~~~~~p~~~~~ 249 (416)
.+....-+.+..+||+.+|++... +.+ ..+.|..++.++||.|+++|+||+ |+++++
T Consensus 399 ~~~~~~~~~~~~~ig~~i~~v~~~~~~~~~~~~~~~~~~~~i~~r~v~~~~~~P~~~y~~~pst~~--------~~~~~~ 470 (612)
T KOG0045|consen 399 RRGERSFGANILDIGFHIYEVPLEGKYFVLDNAPIASSSSFINNREVSVRFRLPPGTYVIVPSTFE--------PGEEGE 470 (612)
T ss_pred ccccccccceeeecceEEEEecCCCCceEecccchhcccccccceeEEEEecCCCcceeecccCCC--------CCCCcc
Confidence 887655455778999999998733 111 236788899999999999999998 788999
Q ss_pred eEEEEEeCCCceeEEeCCchhHHHHHHHHHhHhcceeeecccCeEEEEEecCeeEEEEEEEcCCCCceEEEEeecCceee
Q psy294 250 YLLAIHSSKPVLVEQIEPSEYILADTIISLTLAKGQRHEGRERMTAYYLTTGWAGLVVMVENRYENRWIHVRCDCGIFWV 329 (416)
Q Consensus 250 f~LrI~S~~~v~~~~v~~~~~~l~~sl~~~~~~~G~~~e~r~g~~~~y~~~~~~~~~vm~eN~~~~~~~~v~~~~~~~~~ 329 (416)
|+|||||...+..+. ...|.....+....+..++|.+..+..+.+..+.++++.+....+.++.+
T Consensus 471 f~lrvfs~~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~s~~~~~~~~------- 535 (612)
T KOG0045|consen 471 FLLRVFSNVKVKSEE--------DMEISLDETKRSTNIIVMKGFSLGECGDKWKLSSTLVNTKVSRSSEFILT------- 535 (612)
T ss_pred EEEEEeecccccCcc--------ceEEeecccccceeeeeecceehhhhchhhhccccccccccchhhceeee-------
Confidence 999999999888775 00111111122222223345555444455555555555555555544444
Q ss_pred eeccCceeeeEeccCceeeeeecCCCCceEEEEEEeEeCCCceEEEEeeeeeeeccCCccCCCCCCCccCCCCCCCCcCC
Q psy294 330 FCDCHQSYNVVSTRGQLKTLDCVPPLHRQVIIVLTQLEGSGGFSVSHHLTHRLASRGGLHDWGPSGVSHLPPLDPGVEGL 409 (416)
Q Consensus 330 ~~d~~~~~nv~s~rg~l~~~d~vPp~~rqv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~p~~~~~~~~~ 409 (416)
.+-... + .+....++.. .+++.+..............+++.+.........++.....+|.|.+......+
T Consensus 536 --~~~~~~-~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (612)
T KOG0045|consen 536 --VEVVSP-L-----DIEGESTLVV-DIPIAIESKGSGDVAPLLNVIRLRIADPEIAYSFDSTSCCATEGPLVLDELFDL 606 (612)
T ss_pred --eccccc-E-----EEeccccccc-cccceeeccCCcccccceeeeeeeccChhheeeccccccccccCcchhhhhhcC
Confidence 111111 1 2223334444 666666666666666666666666766666667888999999999987766666
Q ss_pred CCCc
Q psy294 410 HSPR 413 (416)
Q Consensus 410 ~~~~ 413 (416)
+.+.
T Consensus 607 ~~~~ 610 (612)
T KOG0045|consen 607 SSKK 610 (612)
T ss_pred CCCC
Confidence 6553
No 2
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=99.77 E-value=2.9e-19 Score=177.22 Aligned_cols=87 Identities=47% Similarity=0.892 Sum_probs=80.9
Q ss_pred eeeeeeeeeceeeeeeeecCcee--eecccCCCCcceecCcCCCCCCCCC---HHHHHhhCCCCCCCCceeeehhhhhcc
Q psy294 49 ISFEDVLKHAYSVLDVRDMDGTR--LLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKY 123 (416)
Q Consensus 49 ms~~df~~haYsvl~v~~~~~~~--Ll~lrnpWg~~~w~G~Ws~~s~~W~---~~~~~~l~~~~~~dG~FWMs~~Df~~~ 123 (416)
...+.+.+|||+||+++++.+.+ |++||||||..+|+|+|+++++.|+ ++++++|.....+||+|||+|+||++|
T Consensus 221 ~~~GLv~~HaYsVl~v~~~~~~~~~Ll~lrNPWg~~eW~G~wsd~s~~W~~~~~~~~~~l~~~~~~dG~FWM~~~df~~~ 300 (318)
T smart00230 221 KDCGLVKGHAYSVTDVREVQGRRQELLRLRNPWGQVEWNGPWSDDSPEWRSVSASEKKNLGLTFDDDGEFWMSFEDFLRH 300 (318)
T ss_pred hhcCcccCccEEEEEEEEEecCCeEEEEEECCCCCCCcCCCCCCCCccccccCHHHHHHhCCCCCCCCEEEEEhHHHHhh
Confidence 45678899999999999998766 9999999999999999999999999 889999988888999999999999999
Q ss_pred cceEEEEeeecC
Q psy294 124 FDCIDICKVHCA 135 (416)
Q Consensus 124 F~~l~ic~~~p~ 135 (416)
|+.++||+++|+
T Consensus 301 F~~~~vc~~~~~ 312 (318)
T smart00230 301 FDKVEICNLNPD 312 (318)
T ss_pred CCeEEEeccCCc
Confidence 999999999944
No 3
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=99.72 E-value=4.4e-18 Score=167.37 Aligned_cols=85 Identities=55% Similarity=1.076 Sum_probs=73.4
Q ss_pred eeeeeeeeeceeeeeeeecCc----eeeecccCCCCcceecCcCCCCCCCCC---HHHHHhhCCCCCCCCceeeehhhhh
Q psy294 49 ISFEDVLKHAYSVLDVRDMDG----TRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVL 121 (416)
Q Consensus 49 ms~~df~~haYsvl~v~~~~~----~~Ll~lrnpWg~~~w~G~Ws~~s~~W~---~~~~~~l~~~~~~dG~FWMs~~Df~ 121 (416)
...+...+|||+||+++++.+ .+|++||||||..+|+|+|+++++.|+ ++.+..+.....+||+|||+|+||+
T Consensus 207 ~~~gl~~~HaY~Vl~~~~~~~~~~~~~lv~LrNPwg~~~w~G~ws~~s~~W~~~~~~~~~~~~~~~~~dg~FWM~~~df~ 286 (298)
T PF00648_consen 207 EKNGLVPGHAYAVLDVREVNGNGEGHRLVKLRNPWGSTEWKGDWSDDSPEWTEIHPSLRKRLNQSSSDDGTFWMSFEDFL 286 (298)
T ss_dssp CTTSBBTTS-EEEEEEEEEEETTEEEEEEEEE-TTSS---SSTTSTTSGGGGGS-HHHHHHHTTTSSSSSEEEEEHHHHH
T ss_pred cccCcccceeEEEEEEEeeccccceeEEEEEcCCCccccccccccccccccccCCHHHHhhcccccccCccHhHhHHHHH
Confidence 345778899999999999875 899999999999999999999999999 7888899888889999999999999
Q ss_pred cccceEEEEeee
Q psy294 122 KYFDCIDICKVH 133 (416)
Q Consensus 122 ~~F~~l~ic~~~ 133 (416)
+||..++||+++
T Consensus 287 ~~F~~i~vc~~~ 298 (298)
T PF00648_consen 287 KYFSSIYVCRLT 298 (298)
T ss_dssp HHSEEEEEEESC
T ss_pred hhCCceEEEeeC
Confidence 999999999974
No 4
>cd00214 Calpain_III Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are separated by C2-like domain III. Domain III plays an important role in calcium-induced activation of calpain involving electrostatic interactions with subdomain II. Proposed to mediate calpain's interaction with phospholipids and translocation to cytoplasmic/nuclear membranes. CD includes subdomain III of typical and atypical calpains.
Probab=99.69 E-value=2.8e-16 Score=139.45 Aligned_cols=113 Identities=18% Similarity=0.196 Sum_probs=90.3
Q ss_pred eeeeEeeeccCCCCCC----------CCcceeEEEEEecC------CceeEeeeecccccccccCCCCCceEEEEEecCC
Q psy294 144 GWNEVRLSGTLPPLCS----------VRHLSCVLLTVLEP------TEAEFTLFQEGQRNWEKSKRSPLDLCVVILRNKL 207 (416)
Q Consensus 144 ~W~e~~~~g~~~~~~~----------~~~~~~~~l~v~ep------~e~~~~L~Q~~~r~~~~~~~~~~~ig~~v~r~~~ 207 (416)
.|....+.|.|..+.+ ...||||.|+|.++ +++.|+|+|+++|.....+.....|||.||+++.
T Consensus 2 ~W~~~~~~G~W~~g~tAGGc~~~~~tf~~NPQf~l~v~~~~~~~~~~~v~i~L~q~~~r~~~~~~~~~~~IGf~v~~~~~ 81 (150)
T cd00214 2 KWHTKSFNGEWRRGQTAGGCRNNPDTFWTNPQFRIRVPEPDDDEGKCTVLIALMQKNRRHLRKKGLDLLTIGFHVYKVPG 81 (150)
T ss_pred cceEEEEeCeEeCCcccCCCCCcccccccCceEEEEecCCCCCCCccEEEEEeccCCcchhcccCCCcceEEEEEEEeCC
Confidence 3777777777765432 24699999999998 6788999999988655544557789999999853
Q ss_pred C-C------------------CccccEEeeeEeecCCcEEEEEeeecccccCcCCCCCCCCeEEEEEeCCCceeEE
Q psy294 208 S-S------------------TSVRGFVGCHKMLERDIYLVVCLAFNHWHTGISDTAQYPEYLLAIHSSKPVLVEQ 264 (416)
Q Consensus 208 ~-~------------------~~v~~~v~~~~~LepG~YvVVp~tf~~~~~~~~~p~~~~~f~LrI~S~~~v~~~~ 264 (416)
. . ....+++++++.|+||.|+|||+||+ |+++++|.|||||++++.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~s~~~~~~rev~~~~~L~pG~YvIIPsT~~--------p~~~g~F~LrVfs~~~~~~~~ 149 (150)
T cd00214 82 ENRHLRRDFFLHKAPRARSSTFINTREVSLRFRLPPGEYVIVPSTFE--------PGEEGEFLLRVFSEKSIKSSE 149 (150)
T ss_pred cCcccChhhhhccCcccccCccccccEEEEEEEcCCCCEEEEeeecC--------CCCcccEEEEEEecCCCcccc
Confidence 1 0 11347889999999999999999998 789999999999999998765
No 5
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=99.64 E-value=1.7e-16 Score=157.34 Aligned_cols=84 Identities=51% Similarity=0.934 Sum_probs=76.7
Q ss_pred eeeeeeeeeeceeeeeeeecC--ceeeecccCCCCcceecCcCCCCCCCCC--HHHHHhhCCCCCCCCceeeehhhhhcc
Q psy294 48 WISFEDVLKHAYSVLDVRDMD--GTRLLQLRNPWGHFSWKGDWSDDSNLWT--PELRATLMPRGASDGVFWISFEDVLKY 123 (416)
Q Consensus 48 Wms~~df~~haYsvl~v~~~~--~~~Ll~lrnpWg~~~w~G~Ws~~s~~W~--~~~~~~l~~~~~~dG~FWMs~~Df~~~ 123 (416)
....+.+.+|||+||++.++. +.+|++||||||..+|+|+|+++++.|. +..+..+.....+||+|||+|+||++|
T Consensus 228 ~~~~Gl~~~HaY~Vl~~~~~~~~~~~lv~lrNPWg~~~w~G~ws~~~~~w~~~~~~~~~~~~~~~~dG~Fwm~~~df~~~ 307 (315)
T cd00044 228 RTANGLVKGHAYSVLDVREVQEEGLRLLRLRNPWGVGEWWGGWSDDSSEWWVIDAERKKLLLSGKDDGEFWMSFEDFLRN 307 (315)
T ss_pred hccCCcccCcceEEeEEEEEccCceEEEEecCCccCCCccCCCCCCCchhccChHHHHHhcCCCCCCCEEEEEhHHhhee
Confidence 456788899999999999998 8999999999999999999999999994 667777777788999999999999999
Q ss_pred cceEEEEe
Q psy294 124 FDCIDICK 131 (416)
Q Consensus 124 F~~l~ic~ 131 (416)
|+.++||+
T Consensus 308 F~~~~vc~ 315 (315)
T cd00044 308 FDGLYVCN 315 (315)
T ss_pred eCeEEEeC
Confidence 99999995
No 6
>smart00720 calpain_III calpain_III.
Probab=99.63 E-value=2.9e-15 Score=131.75 Aligned_cols=95 Identities=18% Similarity=0.205 Sum_probs=78.1
Q ss_pred CCcceeEEEEEecCCc----eeEeeeecccccccccCCCCCceEEEEEecCCC------------------CCccccEEe
Q psy294 160 VRHLSCVLLTVLEPTE----AEFTLFQEGQRNWEKSKRSPLDLCVVILRNKLS------------------STSVRGFVG 217 (416)
Q Consensus 160 ~~~~~~~~l~v~ep~e----~~~~L~Q~~~r~~~~~~~~~~~ig~~v~r~~~~------------------~~~v~~~v~ 217 (416)
..+||||.|++.++++ +.|+|+|+++|.....+.....|||.||+++.. .....++++
T Consensus 26 f~~NPqy~l~v~~~~~~~~~v~i~L~q~~~r~~~~~~~~~~~iGf~v~~~~~~~~~~~~~~~~~~~~~~s~~y~~~r~v~ 105 (143)
T smart00720 26 FWTNPQFRITLEEPDDDDCTVLIALMQKNRRRLRRKGADFLTIGFAVYKVPKELHLRRDFFLSNAPRASSGDYINGREVS 105 (143)
T ss_pred cccCCeEEEEecCCCCCceEEEEEecccCcccccccCCccceEeEEEEEeccccccchhhhhccCccccccccccCeEEE
Confidence 3579999999999875 889999999886554444667899999998432 112346788
Q ss_pred eeEeecCCcEEEEEeeecccccCcCCCCCCCCeEEEEEeCCCcee
Q psy294 218 CHKMLERDIYLVVCLAFNHWHTGISDTAQYPEYLLAIHSSKPVLV 262 (416)
Q Consensus 218 ~~~~LepG~YvVVp~tf~~~~~~~~~p~~~~~f~LrI~S~~~v~~ 262 (416)
+++.|+||.|+|||+||+ |+++++|.|||||+.++.+
T Consensus 106 ~~~~L~~G~Y~iVPsT~~--------p~~~g~F~LrV~s~~~~~l 142 (143)
T smart00720 106 ERFRLPPGEYVIVPSTFE--------PNQEGDFLLRVFSEGPFKL 142 (143)
T ss_pred EEEEcCCCCEEEEEeecC--------CCCccCEEEEEEecCcccc
Confidence 999999999999999998 7899999999999998865
No 7
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=99.56 E-value=1.9e-15 Score=149.95 Aligned_cols=66 Identities=41% Similarity=0.925 Sum_probs=60.1
Q ss_pred eeEEEEeCCCCCCCCCCCCCCCCCCCC---HHHHhhhCCccCCCCceeeeeeeeeeeceeeeeeeecCce
Q psy294 4 TRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKHAYSVLDVRDMDGT 70 (416)
Q Consensus 4 ~~L~rlrNpwg~~~w~G~ws~~s~~W~---~~~r~~l~~~~~~dG~FWms~~df~~haYsvl~v~~~~~~ 70 (416)
++|||||||||..+|+|+|||+|++|+ ++++++|+....+||+|||+++||+.| |+-+.+|.+.+.
T Consensus 244 ~~Ll~lrNPWg~~eW~G~wsd~s~~W~~~~~~~~~~l~~~~~~dG~FWM~~~df~~~-F~~~~vc~~~~~ 312 (318)
T smart00230 244 QELLRLRNPWGQVEWNGPWSDDSPEWRSVSASEKKNLGLTFDDDGEFWMSFEDFLRH-FDKVEICNLNPD 312 (318)
T ss_pred eEEEEEECCCCCCCcCCCCCCCCccccccCHHHHHHhCCCCCCCCEEEEEhHHHHhh-CCeEEEeccCCc
Confidence 459999999999999999999999999 789999988888999999999999999 898899876643
No 8
>PF01067 Calpain_III: Calpain large subunit, domain III; InterPro: IPR022682 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. This entry represents domain III. It is found in association with PF00648 from PFAM. The function of the domain III and I are currently unknown. Domain II is a cysteine protease and domain IV is a calcium binding domain. Calpains are believed to participate in intracellular signaling pathways mediated by calcium ions. ; PDB: 1QXP_B 2QFE_A 1DF0_A 1U5I_A 3DF0_A 3BOW_A 1KFU_L 1KFX_L.
Probab=99.52 E-value=1e-13 Score=121.94 Aligned_cols=111 Identities=23% Similarity=0.274 Sum_probs=81.6
Q ss_pred eeeEeeeccCCCCC----------CCCcceeEEEEEecCCc------eeEeeeecccccccccCCCCCceEEEEEecCC-
Q psy294 145 WNEVRLSGTLPPLC----------SVRHLSCVLLTVLEPTE------AEFTLFQEGQRNWEKSKRSPLDLCVVILRNKL- 207 (416)
Q Consensus 145 W~e~~~~g~~~~~~----------~~~~~~~~~l~v~ep~e------~~~~L~Q~~~r~~~~~~~~~~~ig~~v~r~~~- 207 (416)
|+...+.|.|..+. +...||||.|++.++++ +.|+|.|++.+.....+.....|||.|++...
T Consensus 2 W~~~~~~G~W~~~~taGG~~~~~~s~~~NPQy~l~v~~~~~~~~~~~v~i~L~q~~~~~~~~~~~~~~~Ig~~v~~~~~~ 81 (147)
T PF01067_consen 2 WHTVTIEGEWVTGNTAGGCPNNPYSWWNNPQYRLTVSEPTEESNKCTVVISLMQKDRRRKRDVGEKDLPIGFYVFKVQSQ 81 (147)
T ss_dssp EEEEEEEEEE-TTTS---STT-TTTGGGS-EEEEEESSGCCCSSBEEEEEEEEECSGCCGCSTTTTTSEEEEEEEEETTT
T ss_pred eeEEEEeCEEeCCCcCCCCcccccccccCcEEEEEEcCCCCCcceeEEEEEEEecCcchhhcccccceEEeEEEEeeecc
Confidence 66666777773222 33469999999999886 78899999988654434467789999999820
Q ss_pred -----------C-------CCccccEEeeeEeecCCcEEEEEeeecccccCcCCCCCCCCeEEEEEeCCCceeE
Q psy294 208 -----------S-------STSVRGFVGCHKMLERDIYLVVCLAFNHWHTGISDTAQYPEYLLAIHSSKPVLVE 263 (416)
Q Consensus 208 -----------~-------~~~v~~~v~~~~~LepG~YvVVp~tf~~~~~~~~~p~~~~~f~LrI~S~~~v~~~ 263 (416)
. .....+.+...+.|+||.|+|||+||+ |+++++|.|+|||+.|++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~L~~G~YvIVPsT~~--------~~~~g~F~L~v~s~~~~~l~ 147 (147)
T PF01067_consen 82 QKRLPRQYFLFNKPVVSSGDYSNSREVSEEFTLPPGTYVIVPSTYE--------PGQEGEFTLRVFSDSPFELQ 147 (147)
T ss_dssp TSE--HHHHHTS-SSEE-SSEBSSSEEEEEEEE-SEEEEEEEEESS--------TT--EEEEEEEEESSSEEE-
T ss_pred cccCCcceeccccceeeccccccceEEEEEEEcCCCCEEEEEecCC--------CCCeeeEEEEEEECCCcccC
Confidence 0 011246788889999999999999998 78899999999999999874
No 9
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=99.52 E-value=5.4e-15 Score=145.47 Aligned_cols=64 Identities=56% Similarity=1.111 Sum_probs=55.6
Q ss_pred CeeEEEEeCCCCCCCCCCCCCCCCCCCC---HHHHhhhCCccCCCCceeeeeeeeeeeceeeeeeeec
Q psy294 3 GTRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKHAYSVLDVRDM 67 (416)
Q Consensus 3 ~~~L~rlrNpwg~~~w~G~ws~~s~~W~---~~~r~~l~~~~~~dG~FWms~~df~~haYsvl~v~~~ 67 (416)
+.||||||||||..+|+|+||++|+.|+ +.+++.+.....+||+|||+++||+.+ |+.+++|++
T Consensus 231 ~~~lv~LrNPwg~~~w~G~ws~~s~~W~~~~~~~~~~~~~~~~~dg~FWM~~~df~~~-F~~i~vc~~ 297 (298)
T PF00648_consen 231 GHRLVKLRNPWGSTEWKGDWSDDSPEWTEIHPSLRKRLNQSSSDDGTFWMSFEDFLKY-FSSIYVCRL 297 (298)
T ss_dssp EEEEEEEE-TTSS---SSTTSTTSGGGGGS-HHHHHHHTTTSSSSSEEEEEHHHHHHH-SEEEEEEES
T ss_pred eeEEEEEcCCCccccccccccccccccccCCHHHHhhcccccccCccHhHhHHHHHhh-CCceEEEee
Confidence 3899999999999999999999999998 678888888888999999999999999 999999986
No 10
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=99.43 E-value=9.5e-14 Score=137.78 Aligned_cols=63 Identities=51% Similarity=0.978 Sum_probs=56.2
Q ss_pred CeeEEEEeCCCCCCCCCCCCCCCCCCCC--HHHHhhhCCccCCCCceeeeeeeeeeeceeeeeeee
Q psy294 3 GTRLLQLRNPWGHFSWKGDWSDDSNLWT--PELRATLMPRGASDGVFWISFEDVLKHAYSVLDVRD 66 (416)
Q Consensus 3 ~~~L~rlrNpwg~~~w~G~ws~~s~~W~--~~~r~~l~~~~~~dG~FWms~~df~~haYsvl~v~~ 66 (416)
|+|||+||||||..+|+|+||++|++|. +..++.+.....+||+|||+++||+.+ |..+.+|.
T Consensus 251 ~~~lv~lrNPWg~~~w~G~ws~~~~~w~~~~~~~~~~~~~~~~dG~Fwm~~~df~~~-F~~~~vc~ 315 (315)
T cd00044 251 GLRLLRLRNPWGVGEWWGGWSDDSSEWWVIDAERKKLLLSGKDDGEFWMSFEDFLRN-FDGLYVCN 315 (315)
T ss_pred ceEEEEecCCccCCCccCCCCCCCchhccChHHHHHhcCCCCCCCEEEEEhHHhhee-eCeEEEeC
Confidence 8999999999999999999999999994 566667766778999999999999999 88888873
No 11
>KOG0045|consensus
Probab=99.38 E-value=1.5e-13 Score=145.85 Aligned_cols=85 Identities=36% Similarity=0.795 Sum_probs=66.9
Q ss_pred eeEEEEeCCCCCCCCCCCCCCCCCCCCH---HHHhhhCCccCCCCceeeeeeeeeeeceeeeeeeecCceeeec-ccCCC
Q psy294 4 TRLLQLRNPWGHFSWKGDWSDDSNLWTP---ELRATLMPRGASDGVFWISFEDVLKHAYSVLDVRDMDGTRLLQ-LRNPW 79 (416)
Q Consensus 4 ~~L~rlrNpwg~~~w~G~ws~~s~~W~~---~~r~~l~~~~~~dG~FWms~~df~~haYsvl~v~~~~~~~Ll~-lrnpW 79 (416)
++|||||||||+.+|+|+|||++++|.. ..++.+.....+||+|||+++||+.+ |..+.+|.+.+..+.. .+.-|
T Consensus 265 ~~lirlrNPwg~~~W~G~wsd~~~~W~~v~~~~~~~~~~~~~~dGeFWms~~dF~~~-F~~~~vC~~~~~~~~~~~~~~~ 343 (612)
T KOG0045|consen 265 HRLIRLRNPWGESEWNGPWSDGSEEWHLVDKSKLSELGRQPLDDGEFWMSFDDFLRE-FDSLTVCRLRPDWLESRNQLQW 343 (612)
T ss_pred ceeEEecCCcCCceeccccccCCcchhhhCHHHHhhcccccccCCCeeeeHHHHHhh-CCeEeecCCCcchhhhhheeee
Confidence 8999999999999999999999999984 45556666668999999999999999 9999999877653321 11235
Q ss_pred CcceecCcCC
Q psy294 80 GHFSWKGDWS 89 (416)
Q Consensus 80 g~~~w~G~Ws 89 (416)
......|.|+
T Consensus 344 ~~~~~~~~w~ 353 (612)
T KOG0045|consen 344 VKLSLDGEWE 353 (612)
T ss_pred eeeecCCccc
Confidence 5555666663
No 12
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=24.40 E-value=84 Score=24.64 Aligned_cols=35 Identities=23% Similarity=0.181 Sum_probs=27.0
Q ss_pred eeEEeCCchh-HHHHHHHHHhHhcceeeecccCeEE
Q psy294 261 LVEQIEPSEY-ILADTIISLTLAKGQRHEGRERMTA 295 (416)
Q Consensus 261 ~~~~v~~~~~-~l~~sl~~~~~~~G~~~e~r~g~~~ 295 (416)
..++.+|+.. +.++.|++..+++||..+..+|++.
T Consensus 34 ~arFhTCSa~~m~a~~Li~FL~~kgKfi~~~~gft~ 69 (77)
T TIGR03853 34 DARFHTCSAEGMTADELLQFLLKKGKFIESDGGFTT 69 (77)
T ss_pred CceEeecccccCCHHHHHHHHHHCCCEeecCCcEEE
Confidence 3456667765 6789999999999999887667664
No 13
>PHA02872 EFc gene family protein; Provisional
Probab=21.34 E-value=1e+02 Score=25.81 Aligned_cols=47 Identities=19% Similarity=0.487 Sum_probs=28.7
Q ss_pred cCeEEEEEecCeeEEEEEE-----EcC-CCCceE------EEEeecC-ceeeeeccCceeeeE
Q psy294 291 ERMTAYYLTTGWAGLVVMV-----ENR-YENRWI------HVRCDCG-IFWVFCDCHQSYNVV 340 (416)
Q Consensus 291 ~g~~~~y~~~~~~~~~vm~-----eN~-~~~~~~------~v~~~~~-~~~~~~d~~~~~nv~ 340 (416)
+-++|||+ .|.++||.-| ++- .+..|+ .++. + .|++++.|+...|-+
T Consensus 60 dtvkIYfl-EGkG~LIfSv~dv~sp~~eedSgyv~eG~~Vef~t--~f~C~iTlacts~~Ntv 119 (124)
T PHA02872 60 DTVKIYFL-EGKGGLIFSVSDVGSPDNEEDSGYVNEGECVEFET--DFACFITLACTSPINTV 119 (124)
T ss_pred CeEEEEEE-ecCCcEEEEEEecCCCCccccccceecccEEEEec--CceEEEEEEecCCcceE
Confidence 45778888 5778998755 333 233343 2322 2 367888888877753
Done!