Query psy294
Match_columns 416
No_of_seqs 300 out of 1415
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 21:28:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bow_A Calpain-2 catalytic sub 100.0 3E-34 1E-38 311.1 18.6 214 46-268 251-515 (714)
2 1qxp_A MU-like calpain; M-calp 100.0 2.3E-33 7.7E-38 311.7 16.9 212 48-268 253-516 (900)
3 2nqa_A Calpain 8; calpain, cal 99.7 6.2E-19 2.1E-23 174.0 6.0 87 48-135 233-326 (326)
4 1ziv_A Calpain 9; cysteine pro 99.7 4E-19 1.4E-23 176.1 4.4 91 48-138 237-334 (339)
5 2r9f_A Calpain-1 catalytic sub 99.7 1.1E-18 3.9E-23 172.9 6.2 90 48-138 238-334 (339)
6 1qxp_A MU-like calpain; M-calp 99.7 9.6E-17 3.3E-21 178.2 10.6 113 3-117 278-413 (900)
7 2r9f_A Calpain-1 catalytic sub 99.6 2.1E-16 7E-21 156.7 4.3 69 3-73 263-334 (339)
8 2nqa_A Calpain 8; calpain, cal 99.6 1.9E-16 6.6E-21 156.2 3.6 65 3-69 258-325 (326)
9 1ziv_A Calpain 9; cysteine pro 99.6 3E-16 1E-20 155.5 2.6 68 2-71 261-332 (339)
10 3bow_A Calpain-2 catalytic sub 99.6 6.4E-16 2.2E-20 167.5 4.0 88 3-92 278-369 (714)
11 2qfe_A Calpain-7; C2-like doma 99.5 1.2E-13 3.9E-18 121.1 10.4 87 161-265 47-147 (148)
12 3sg6_A Gcamp2, myosin light ch 69.4 1.3 4.6E-05 44.8 1.0 32 220-262 256-287 (450)
13 3alx_A Hemagglutinin, CDW150; 61.2 9.4 0.00032 38.0 5.2 51 332-382 240-307 (559)
14 3jqw_A COLH protein, collagena 50.9 98 0.0034 25.1 9.2 72 163-255 38-116 (121)
15 2zb6_A Hemagglutinin protein; 49.7 17 0.00059 35.6 4.8 50 332-381 275-341 (481)
16 1nqj_A Class 1 collagenase; be 27.5 2.4E+02 0.0083 22.7 9.3 72 163-254 40-117 (119)
No 1
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=100.00 E-value=3e-34 Score=311.13 Aligned_cols=214 Identities=23% Similarity=0.395 Sum_probs=177.5
Q ss_pred ceeeeeeeeeeeceeeeeeeecC----ceeeecccCCCCcceecCcCCCCCCCCC---HHHHHhhCCCCCCCCceeeehh
Q psy294 46 VFWISFEDVLKHAYSVLDVRDMD----GTRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFE 118 (416)
Q Consensus 46 ~FWms~~df~~haYsvl~v~~~~----~~~Ll~lrnpWg~~~w~G~Ws~~s~~W~---~~~~~~l~~~~~~dG~FWMs~~ 118 (416)
+--...+++.+|||+|+++.++. +.+|++||||||..+|+|+|++++++|+ |+.+.+|.... +||+|||+|+
T Consensus 251 ~~~~~~GL~~~HaYsvl~~~~v~~~~~~~~lv~lrNPWg~~ew~G~wsd~s~~W~~~~~~~~~~l~~~~-~dg~FWm~~~ 329 (714)
T 3bow_A 251 EAVTYQKLVKGHAYSVTGAEEVESSGSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTERQ-EDGEFWMSFS 329 (714)
T ss_dssp CCBCTTSCBTTSCEEEEEEEEEEETTEEEEEEEEECTTSCCCCCSTTSTTCGGGGGSCHHHHHHHCCCC-CSSEEEEEHH
T ss_pred cchhcCCCcCCceEEEeeeEEeecCCCceEEEEEECCCCCcccCCCCCCCCccccccCHHHHHHhCCCC-CCCeEEEEhH
Confidence 33455678899999999999874 4799999999999999999999999998 78999997654 8999999999
Q ss_pred hhhcccceEEEEeeecCCCCCCCcceeeeEeeeccCCCCCCC----------CcceeEEEEEecCC----------ceeE
Q psy294 119 DVLKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGTLPPLCSV----------RHLSCVLLTVLEPT----------EAEF 178 (416)
Q Consensus 119 Df~~~F~~l~ic~~~p~~~~~~~~~~W~e~~~~g~~~~~~~~----------~~~~~~~l~v~ep~----------e~~~ 178 (416)
||+++|+.++||++.|+.+.......|+...+.|.|.+|.++ ..||||.|+|.+++ .+.|
T Consensus 330 df~~~F~~~~ic~~~~~~~~~~~~~~w~~~~~~g~W~~g~taGG~~~~~~tf~~NPqf~l~v~~~~~~~~~~~~~~~v~v 409 (714)
T 3bow_A 330 DFLRHYSRLEICNLTPDTLTCDSYKKWKLTKMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLV 409 (714)
T ss_dssp HHHHHCCEEEEEESSSSCTTCSSCCEEEEEEEEEEECTTTTCCCCTTCHHHHTTSCCEEEEECGGGCBCGGGCCBEEEEE
T ss_pred HHHhhCCeEEEEEecccccccccCcceEEEEEeceeccCCCCCCCCCccccccCCceEEEEEccCCccccccCCccEEEE
Confidence 999999999999999987755444689999999999876543 24899999998763 4788
Q ss_pred eeeecccccccccCCCCCceEEEEEecCC---C---CC------------------ccccEEeeeEeecCCcEEEEEeee
Q psy294 179 TLFQEGQRNWEKSKRSPLDLCVVILRNKL---S---ST------------------SVRGFVGCHKMLERDIYLVVCLAF 234 (416)
Q Consensus 179 ~L~Q~~~r~~~~~~~~~~~ig~~v~r~~~---~---~~------------------~v~~~v~~~~~LepG~YvVVp~tf 234 (416)
+|+|+++|.....+.....|||.||+++. + .+ ...|+|++++.|+||+|+|||+||
T Consensus 410 ~L~Q~~~r~~~~~g~~~~~Igf~v~~~~~~~~~~~~~~l~~~ff~~~~~~~~s~~f~~~Rev~~~~~L~pG~Y~IVPstf 489 (714)
T 3bow_A 410 GLIQKHRRRQRKMGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGEYVLVPSTF 489 (714)
T ss_dssp EEEEESCGGGGGGTCCCCCEEEEEEECCGGGSSCTTCCCCHHHHHHCCCSEECSCEESSSEEEEEEEECSEEEEEEEEES
T ss_pred EeeeeccccccccCCCcceEEEEEEEecccccCccccccchhhccccCCccccCCcccccceEEEEEeCCCCeEEEEecC
Confidence 99999998766555667899999999742 0 00 124678999999999999999999
Q ss_pred cccccCcCCCCCCCCeEEEEEeCCCceeEEeCCc
Q psy294 235 NHWHTGISDTAQYPEYLLAIHSSKPVLVEQIEPS 268 (416)
Q Consensus 235 ~~~~~~~~~p~~~~~f~LrI~S~~~v~~~~v~~~ 268 (416)
+ |+++++|+|||||.++..+++++..
T Consensus 490 ~--------p~~e~~F~Lrv~s~~~~~~~el~~~ 515 (714)
T 3bow_A 490 E--------PHKNGDFCIRVFSEKKADYQTVDDE 515 (714)
T ss_dssp S--------TTCCEEEEEEEEEEESSCC--CCCS
T ss_pred C--------CCCccceeEEEeccCCcceeecccc
Confidence 8 6788999999999998876655443
No 2
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Probab=100.00 E-value=2.3e-33 Score=311.69 Aligned_cols=212 Identities=25% Similarity=0.415 Sum_probs=165.9
Q ss_pred eeeeeeeeeeceeeeeeeecC----ceeeecccCCCCcceecCcCCCCCCCCC---HHHHHhhCCCCCCCCceeeehhhh
Q psy294 48 WISFEDVLKHAYSVLDVRDMD----GTRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDV 120 (416)
Q Consensus 48 Wms~~df~~haYsvl~v~~~~----~~~Ll~lrnpWg~~~w~G~Ws~~s~~W~---~~~~~~l~~~~~~dG~FWMs~~Df 120 (416)
....+++.+|||+|++++.+. +.+|++||||||..+|+|+||+++++|+ ++.+.+|... .+||+|||+|+||
T Consensus 253 ~~~~gl~~~haY~v~~~~~~~~~~~~~~lv~lrNPwg~~ew~G~wsd~s~~W~~~~~~~~~~l~~~-~~dg~Fwm~~~df 331 (900)
T 1qxp_A 253 ITFKNLVRGHAYSVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVK-MEDGEFWMSFRDF 331 (900)
T ss_dssp -CCCCC---CCCEEEEEEECCCSSSCCEEEEEECTTCCCCCSCSCC-CCSCSSSSCCTHHHHTTCC-CCSSCCCCBSTTS
T ss_pred hhcCCCCCCceEEEeEEEEEecCCCceEEEEEeCCCCCCCcCCCCCCCCcccccCCHHHHHHhCCC-CCCCeEEeEHHHH
Confidence 355678899999999999874 4799999999999999999999999998 7899999754 6899999999999
Q ss_pred hcccceEEEEeeecCCCCCCCcceeeeEeeeccCCCCCCC----------CcceeEEEEEecCCc------------eeE
Q psy294 121 LKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGTLPPLCSV----------RHLSCVLLTVLEPTE------------AEF 178 (416)
Q Consensus 121 ~~~F~~l~ic~~~p~~~~~~~~~~W~e~~~~g~~~~~~~~----------~~~~~~~l~v~ep~e------------~~~ 178 (416)
+++|+.++||++.|+.+.......|+..++.|.|.+|.++ ..||||.++|.++++ +.|
T Consensus 332 ~~~F~~~~ic~~~~~~~~~~~~~~w~~~~~~g~W~~g~taGG~~~~~~tf~~NPqf~l~v~~~~~~~~~~~~~~~~~v~i 411 (900)
T 1qxp_A 332 IREFTKLEICNLTPDALKSRTLRNWNTTFYEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLL 411 (900)
T ss_dssp SSCSEEEEEBCCCC--CCSSCSCCCBCCEEEEEECTTTTCCCCTTCTTTGGGSCBCEEEECSCCC-----CCSSCCEEEE
T ss_pred HhhCCeEEEEEecchhhccccCCceEEEeccccccCCCCCCCCCCcccccccCceEEEEEccCCccccccccCCCcEEEE
Confidence 9999999999999988764444689999999999876443 348999999987653 789
Q ss_pred eeeecccccccccCCCCCceEEEEEecCCC-----C-----------------C-ccccEEeeeEeecCCcEEEEEeeec
Q psy294 179 TLFQEGQRNWEKSKRSPLDLCVVILRNKLS-----S-----------------T-SVRGFVGCHKMLERDIYLVVCLAFN 235 (416)
Q Consensus 179 ~L~Q~~~r~~~~~~~~~~~ig~~v~r~~~~-----~-----------------~-~v~~~v~~~~~LepG~YvVVp~tf~ 235 (416)
+|+|+++|.....+.....|||.||+++.. . . ...|+|++++.|+||+|+|||+||+
T Consensus 412 ~L~Q~~~r~~~~~~~~~~~igf~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Rev~~~~~L~pG~Y~IVPst~~ 491 (900)
T 1qxp_A 412 ALMQKHRRRERRFGRDMETIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPPGEYIVVPSTFE 491 (900)
T ss_dssp EEEEC----------CCCCEEEEEEECCSCC----CCCCHHHHTTSCCCSBCSSCBSSSCEEEEEECCSEEEEEEEEESS
T ss_pred EeeecccccccccCCCceeeEEEEEEeccccccccccCChhhhccCCCccccCCccccCceeEeEEeCCCCEEEEeecCC
Confidence 999999987655455678999999998420 0 0 1246799999999999999999998
Q ss_pred ccccCcCCCCCCCCeEEEEEeCCCceeEEeCCc
Q psy294 236 HWHTGISDTAQYPEYLLAIHSSKPVLVEQIEPS 268 (416)
Q Consensus 236 ~~~~~~~~p~~~~~f~LrI~S~~~v~~~~v~~~ 268 (416)
|+++++|+|||||.+++.+++++..
T Consensus 492 --------p~~e~~F~Lrv~s~~~~~~~eld~~ 516 (900)
T 1qxp_A 492 --------PNKEGDFLLRFFSEKKAGTQELDDQ 516 (900)
T ss_dssp --------SSCCEEEEEEEEESSCEEECCBCCC
T ss_pred --------CCCCCCceEEEeccCCcceeecCcc
Confidence 6788999999999999988766555
No 3
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC; HET: AR7; 2.20A {Homo sapiens}
Probab=99.75 E-value=6.2e-19 Score=174.01 Aligned_cols=87 Identities=38% Similarity=0.836 Sum_probs=74.2
Q ss_pred eeeeeeeeeeceeeeeeeecC----ceeeecccCCCCcceecCcCCCCCCCCC---HHHHHhhCCCCCCCCceeeehhhh
Q psy294 48 WISFEDVLKHAYSVLDVRDMD----GTRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDV 120 (416)
Q Consensus 48 Wms~~df~~haYsvl~v~~~~----~~~Ll~lrnpWg~~~w~G~Ws~~s~~W~---~~~~~~l~~~~~~dG~FWMs~~Df 120 (416)
-...+++.+|||+|++++++. +.+|++||||||..+|+|+||+++++|+ ++.|.+|... .+||+|||+|+||
T Consensus 233 ~~~~GLv~~HaYsVl~v~~v~~~~~~~~lv~lrNPWg~~eW~G~wsd~s~~W~~~~~~~~~~l~~~-~~dG~FWMs~~df 311 (326)
T 2nqa_A 233 ITSQKLVKSHAYSVTGVEEVNFQGHPEKLIRLRNPWGEVEWSGAWSDDAPEWNHIDPRRKEELDKK-VEDGEFWMSLSDF 311 (326)
T ss_dssp BCTTSCBSSCCEEEEEEEEEEETTEEEEEEEEECTTCC-CCCSTTSTTCGGGGGSCHHHHHHHCCC-CCSSEEEEEHHHH
T ss_pred hhccCCccCceEEEEEEEEEecCCCceEEEEecCCCcCccccCCCCCCCccccccCHHHHHHhCCC-CCCCEEEEEHHHH
Confidence 345678899999999999873 4699999999999999999999999998 7899999754 6899999999999
Q ss_pred hcccceEEEEeeecC
Q psy294 121 LKYFDCIDICKVHCA 135 (416)
Q Consensus 121 ~~~F~~l~ic~~~p~ 135 (416)
+++|+.++||+++|+
T Consensus 312 ~~~F~~l~ic~~~pd 326 (326)
T 2nqa_A 312 VRQFSRLEICNLSPD 326 (326)
T ss_dssp HHHCSEEEEEC----
T ss_pred HHhCCcEEEEEeCCC
Confidence 999999999999864
No 4
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol protease, structural genomics consortium, SGC, hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB: 2p0r_A*
Probab=99.74 E-value=4e-19 Score=176.15 Aligned_cols=91 Identities=34% Similarity=0.774 Sum_probs=77.0
Q ss_pred eeeeeeeeeeceeeeeeeec----CceeeecccCCCCcceecCcCCCCCCCCC---HHHHHhhCCCCCCCCceeeehhhh
Q psy294 48 WISFEDVLKHAYSVLDVRDM----DGTRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDV 120 (416)
Q Consensus 48 Wms~~df~~haYsvl~v~~~----~~~~Ll~lrnpWg~~~w~G~Ws~~s~~W~---~~~~~~l~~~~~~dG~FWMs~~Df 120 (416)
-...+++.+|||+|+++.++ .+.+|++||||||..+|+|+|++++++|+ ++.+++|.....+||+|||+|+||
T Consensus 237 ~~~~GLv~~HaYsVl~v~~v~~~~~~~~Lv~LrNPWg~~eW~G~wsd~s~~W~~~~~~~~~~l~~~~~~dG~FWMs~~Df 316 (339)
T 1ziv_A 237 RTPFGLIKGHAYSVTGIDQVSFRGQRIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAFKDF 316 (339)
T ss_dssp BCTTSCBTTCCEEEEEEEEEEETTEEEEEEEEECCSSCCCCCSTTSTTCHHHHHSCHHHHHHTTCCCCSSSEEEEEHHHH
T ss_pred hhccCcccCeeEEEeEEEEEecCCCceEEEEecCCCCCCccCCCCCcCChhccccCHHHHHHhhCCCCCCCEEEEEHHHH
Confidence 34557788999999999987 46799999999999999999999999998 788999833445999999999999
Q ss_pred hcccceEEEEeeecCCCC
Q psy294 121 LKYFDCIDICKVHCAGWN 138 (416)
Q Consensus 121 ~~~F~~l~ic~~~p~~~~ 138 (416)
+++|+.++||+++|+.+.
T Consensus 317 ~~~F~~l~ic~~~p~~~~ 334 (339)
T 1ziv_A 317 KAHFDKVEICNLTPDALE 334 (339)
T ss_dssp HHHCCEEEEECCC-----
T ss_pred HHhCCeEEEEEEcCcccc
Confidence 999999999999987553
No 5
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A
Probab=99.74 E-value=1.1e-18 Score=172.91 Aligned_cols=90 Identities=38% Similarity=0.751 Sum_probs=78.2
Q ss_pred eeeeeeeeeeceeeeeeeecC----ceeeecccCCCCcceecCcCCCCCCCCC---HHHHHhhCCCCCCCCceeeehhhh
Q psy294 48 WISFEDVLKHAYSVLDVRDMD----GTRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDV 120 (416)
Q Consensus 48 Wms~~df~~haYsvl~v~~~~----~~~Ll~lrnpWg~~~w~G~Ws~~s~~W~---~~~~~~l~~~~~~dG~FWMs~~Df 120 (416)
-...+++.+|||+|++++++. +.+|++||||||..+|+|+||+++++|+ ++.|.+|... .+||+|||+|+||
T Consensus 238 ~~~~GLv~~HaYsVl~v~~v~~~~~~~~Lv~LrNPWg~~eW~G~wsd~s~~W~~~~~~~~~~l~~~-~~dG~FWMs~~Df 316 (339)
T 2r9f_A 238 ITFKNLVRGHAYSVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVK-MEDGEFWMSFRDF 316 (339)
T ss_dssp BCTTSCBTTCCEEEEEEEEEEETTEEEEEEEEECTTSCCCCCSTTSTTCGGGGGSCHHHHHHHCCC-CCSSEEEEEHHHH
T ss_pred hhccCCcCCceEEEeEEEEEecCCCceEEEEEeCCCCCccccCCCCcCCccccccCHHHHHHhCCC-CCCCEEEEEHHHH
Confidence 455678899999999999873 4699999999999999999999999998 7899999755 6999999999999
Q ss_pred hcccceEEEEeeecCCCC
Q psy294 121 LKYFDCIDICKVHCAGWN 138 (416)
Q Consensus 121 ~~~F~~l~ic~~~p~~~~ 138 (416)
+++|+.++||+++|+++.
T Consensus 317 ~~~F~~l~ic~~~~~~~~ 334 (339)
T 2r9f_A 317 IREFTKLEICNLTPDLEH 334 (339)
T ss_dssp HHHCCEEEEEECCC----
T ss_pred HHhCCcEEEEccCchhhh
Confidence 999999999999977543
No 6
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Probab=99.67 E-value=9.6e-17 Score=178.19 Aligned_cols=113 Identities=31% Similarity=0.776 Sum_probs=87.1
Q ss_pred CeeEEEEeCCCCCCCCCCCCCCCCCCCC---HHHHhhhCCccCCCCceeeeeeeeeeeceeeeeeeecCceeee-cccCC
Q psy294 3 GTRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKHAYSVLDVRDMDGTRLL-QLRNP 78 (416)
Q Consensus 3 ~~~L~rlrNpwg~~~w~G~ws~~s~~W~---~~~r~~l~~~~~~dG~FWms~~df~~haYsvl~v~~~~~~~Ll-~lrnp 78 (416)
+++|||||||||..+|+|+|||+|++|+ +++|++|... .+||+|||+++||+.| |+.+++|.+.+..+. .....
T Consensus 278 ~~~lv~lrNPwg~~ew~G~wsd~s~~W~~~~~~~~~~l~~~-~~dg~Fwm~~~df~~~-F~~~~ic~~~~~~~~~~~~~~ 355 (900)
T 1qxp_A 278 RVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVK-MEDGEFWMSFRDFIRE-FTKLEICNLTPDALKSRTLRN 355 (900)
T ss_dssp CCEEEEEECTTCCCCCSCSCC-CCSCSSSSCCTHHHHTTCC-CCSSCCCCBSTTSSSC-SEEEEEBCCCC--CCSSCSCC
T ss_pred ceEEEEEeCCCCCCCcCCCCCCCCcccccCCHHHHHHhCCC-CCCCeEEeEHHHHHhh-CCeEEEEEecchhhccccCCc
Confidence 5899999999999999999999999998 6889999765 5999999999999999 999999998876553 22346
Q ss_pred CCcceecCcCCCCC----------CCC-CHHHHHhhCCCCC--------CCCceeeeh
Q psy294 79 WGHFSWKGDWSDDS----------NLW-TPELRATLMPRGA--------SDGVFWISF 117 (416)
Q Consensus 79 Wg~~~w~G~Ws~~s----------~~W-~~~~~~~l~~~~~--------~dG~FWMs~ 117 (416)
|......|.|..++ +.| +||++..+..... ...++|+++
T Consensus 356 w~~~~~~g~W~~g~taGG~~~~~~tf~~NPqf~l~v~~~~~~~~~~~~~~~~~v~i~L 413 (900)
T 1qxp_A 356 WNTTFYEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLAL 413 (900)
T ss_dssp CBCCEEEEEECTTTTCCCCTTCTTTGGGSCBCEEEECSCCC-----CCSSCCEEEEEE
T ss_pred eEEEeccccccCCCCCCCCCCcccccccCceEEEEEccCCccccccccCCCcEEEEEe
Confidence 98888889997652 234 4887777642211 125799886
No 7
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A
Probab=99.61 E-value=2.1e-16 Score=156.69 Aligned_cols=69 Identities=36% Similarity=0.865 Sum_probs=60.3
Q ss_pred CeeEEEEeCCCCCCCCCCCCCCCCCCCC---HHHHhhhCCccCCCCceeeeeeeeeeeceeeeeeeecCceeee
Q psy294 3 GTRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKHAYSVLDVRDMDGTRLL 73 (416)
Q Consensus 3 ~~~L~rlrNpwg~~~w~G~ws~~s~~W~---~~~r~~l~~~~~~dG~FWms~~df~~haYsvl~v~~~~~~~Ll 73 (416)
+++|||||||||..||+|+|||+|++|+ +++|++|... .+||+|||+++||+.+ |+.+++|.+.+..|.
T Consensus 263 ~~~Lv~LrNPWg~~eW~G~wsd~s~~W~~~~~~~~~~l~~~-~~dG~FWMs~~Df~~~-F~~l~ic~~~~~~~~ 334 (339)
T 2r9f_A 263 RVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVK-MEDGEFWMSFRDFIRE-FTKLEICNLTPDLEH 334 (339)
T ss_dssp EEEEEEEECTTSCCCCCSTTSTTCGGGGGSCHHHHHHHCCC-CCSSEEEEEHHHHHHH-CCEEEEEECCC----
T ss_pred ceEEEEEeCCCCCccccCCCCcCCccccccCHHHHHHhCCC-CCCCEEEEEHHHHHHh-CCcEEEEccCchhhh
Confidence 5799999999999999999999999998 6889999865 6999999999999999 999999998876554
No 8
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC; HET: AR7; 2.20A {Homo sapiens}
Probab=99.60 E-value=1.9e-16 Score=156.19 Aligned_cols=65 Identities=37% Similarity=0.953 Sum_probs=56.7
Q ss_pred CeeEEEEeCCCCCCCCCCCCCCCCCCCC---HHHHhhhCCccCCCCceeeeeeeeeeeceeeeeeeecCc
Q psy294 3 GTRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKHAYSVLDVRDMDG 69 (416)
Q Consensus 3 ~~~L~rlrNpwg~~~w~G~ws~~s~~W~---~~~r~~l~~~~~~dG~FWms~~df~~haYsvl~v~~~~~ 69 (416)
+++|||||||||..||+|+|||+|++|+ +++|++|... .+||+|||+++||+.| |+.+++|++.+
T Consensus 258 ~~~lv~lrNPWg~~eW~G~wsd~s~~W~~~~~~~~~~l~~~-~~dG~FWMs~~df~~~-F~~l~ic~~~p 325 (326)
T 2nqa_A 258 PEKLIRLRNPWGEVEWSGAWSDDAPEWNHIDPRRKEELDKK-VEDGEFWMSLSDFVRQ-FSRLEICNLSP 325 (326)
T ss_dssp EEEEEEEECTTCC-CCCSTTSTTCGGGGGSCHHHHHHHCCC-CCSSEEEEEHHHHHHH-CSEEEEEC---
T ss_pred ceEEEEecCCCcCccccCCCCCCCccccccCHHHHHHhCCC-CCCCEEEEEHHHHHHh-CCcEEEEEeCC
Confidence 5799999999999999999999999998 6889999765 5999999999999999 99999998764
No 9
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol protease, structural genomics consortium, SGC, hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB: 2p0r_A*
Probab=99.58 E-value=3e-16 Score=155.53 Aligned_cols=68 Identities=32% Similarity=0.859 Sum_probs=58.9
Q ss_pred CCeeEEEEeCCCCCCCCCCCCCCCCCCCC---HHHHhhh-CCccCCCCceeeeeeeeeeeceeeeeeeecCcee
Q psy294 2 DGTRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATL-MPRGASDGVFWISFEDVLKHAYSVLDVRDMDGTR 71 (416)
Q Consensus 2 ~~~~L~rlrNpwg~~~w~G~ws~~s~~W~---~~~r~~l-~~~~~~dG~FWms~~df~~haYsvl~v~~~~~~~ 71 (416)
++++|||||||||..||+|+|||+|++|+ +++|++| ... .+||+|||+++||+.+ |+.+++|.+.+..
T Consensus 261 ~~~~Lv~LrNPWg~~eW~G~wsd~s~~W~~~~~~~~~~l~~~~-~~dG~FWMs~~Df~~~-F~~l~ic~~~p~~ 332 (339)
T 1ziv_A 261 QRIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTA-LDDGEFWMAFKDFKAH-FDKVEICNLTPDA 332 (339)
T ss_dssp EEEEEEEEECCSSCCCCCSTTSTTCHHHHHSCHHHHHHTTCCC-CSSSEEEEEHHHHHHH-CCEEEEECCC---
T ss_pred CceEEEEecCCCCCCccCCCCCcCChhccccCHHHHHHhhCCC-CCCCEEEEEHHHHHHh-CCeEEEEEEcCcc
Confidence 46899999999999999999999999997 5788888 544 5999999999999999 9999999887654
No 10
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=99.57 E-value=6.4e-16 Score=167.49 Aligned_cols=88 Identities=39% Similarity=0.906 Sum_probs=75.0
Q ss_pred CeeEEEEeCCCCCCCCCCCCCCCCCCCC---HHHHhhhCCccCCCCceeeeeeeeeeeceeeeeeeecCceeeec-ccCC
Q psy294 3 GTRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKHAYSVLDVRDMDGTRLLQ-LRNP 78 (416)
Q Consensus 3 ~~~L~rlrNpwg~~~w~G~ws~~s~~W~---~~~r~~l~~~~~~dG~FWms~~df~~haYsvl~v~~~~~~~Ll~-lrnp 78 (416)
+++|||||||||..||+|+|||+|++|+ ++++++|.... +||+|||+++||+.+ |+.+++|.+.+..+.. ....
T Consensus 278 ~~~lv~lrNPWg~~ew~G~wsd~s~~W~~~~~~~~~~l~~~~-~dg~FWm~~~df~~~-F~~~~ic~~~~~~~~~~~~~~ 355 (714)
T 3bow_A 278 LQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTERQ-EDGEFWMSFSDFLRH-YSRLEICNLTPDTLTCDSYKK 355 (714)
T ss_dssp EEEEEEEECTTSCCCCCSTTSTTCGGGGGSCHHHHHHHCCCC-CSSEEEEEHHHHHHH-CCEEEEEESSSSCTTCSSCCE
T ss_pred ceEEEEEECCCCCcccCCCCCCCCccccccCHHHHHHhCCCC-CCCeEEEEhHHHHhh-CCeEEEEEecccccccccCcc
Confidence 5799999999999999999999999997 68899997654 999999999999999 9999999988765532 1235
Q ss_pred CCcceecCcCCCCC
Q psy294 79 WGHFSWKGDWSDDS 92 (416)
Q Consensus 79 Wg~~~w~G~Ws~~s 92 (416)
|......|.|..++
T Consensus 356 w~~~~~~g~W~~g~ 369 (714)
T 3bow_A 356 WKLTKMDGNWRRGS 369 (714)
T ss_dssp EEEEEEEEEECTTT
T ss_pred eEEEEEeceeccCC
Confidence 88888889997653
No 11
>2qfe_A Calpain-7; C2-like domain, hydrolase, nuclear protein, protease, thiol protease; 1.45A {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=121.08 Aligned_cols=87 Identities=9% Similarity=0.050 Sum_probs=71.5
Q ss_pred CcceeEEEEEecCCceeEeeeecccccccccCCCCCceEEEEEecCCC-CC------------c-cccEEeeeEeecCCc
Q psy294 161 RHLSCVLLTVLEPTEAEFTLFQEGQRNWEKSKRSPLDLCVVILRNKLS-ST------------S-VRGFVGCHKMLERDI 226 (416)
Q Consensus 161 ~~~~~~~l~v~ep~e~~~~L~Q~~~r~~~~~~~~~~~ig~~v~r~~~~-~~------------~-v~~~v~~~~~LepG~ 226 (416)
..||||.|+|.+++.+.|+|.+ .....|||.||+++.+ +. . ..+.|+.++.|+||.
T Consensus 47 ~~NPQy~l~l~~~~~v~i~L~~----------~~~~~IGf~v~~v~~~~~~l~~~f~~~~s~~~~~~~~v~~~~~L~pG~ 116 (148)
T 2qfe_A 47 KNNPIYQFHIEKTGPLLIELRG----------PRQYSVGFEVVTVSTLGDPGPHGFLRKSSGDYRCGFCYLELENIPSGI 116 (148)
T ss_dssp GGSCCEEEEESSCEEEEEEEEC----------CTTSEEEEEEEEEECCSCCCTTCCSEEECCSCEESEEEEEEEEECSEE
T ss_pred cCCcEEEEEEcCCccEEEEecC----------CCccccceEEEEECCCCCccccceeeeCCceeccCceEEEEEEcCCCC
Confidence 4699999999999999898843 1346899999998532 10 0 113577889999999
Q ss_pred EEEEEeeecccccCcCCCCCCCCeEEEEEeCCCceeEEe
Q psy294 227 YLVVCLAFNHWHTGISDTAQYPEYLLAIHSSKPVLVEQI 265 (416)
Q Consensus 227 YvVVp~tf~~~~~~~~~p~~~~~f~LrI~S~~~v~~~~v 265 (416)
|+|||+||+ |+++++|+|||||.+++.++++
T Consensus 117 YvIVPSTf~--------P~~eg~F~LrVfs~~~~~l~~l 147 (148)
T 2qfe_A 117 FNIIPSTFL--------PKQEGPFFLDFNSIIPIKITQL 147 (148)
T ss_dssp EEEEEEESS--------TTCCEEEEEEEEESSCCEEEEC
T ss_pred EEEEeccCC--------CCCccceEEEEEeCCCCeeEeC
Confidence 999999998 8899999999999999999876
No 12
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=69.40 E-value=1.3 Score=44.82 Aligned_cols=32 Identities=9% Similarity=-0.092 Sum_probs=27.6
Q ss_pred EeecCCcEEEEEeeecccccCcCCCCCCCCeEEEEEeCCCcee
Q psy294 220 KMLERDIYLVVCLAFNHWHTGISDTAQYPEYLLAIHSSKPVLV 262 (416)
Q Consensus 220 ~~LepG~YvVVp~tf~~~~~~~~~p~~~~~f~LrI~S~~~v~~ 262 (416)
+.|+||.| |++++ |.++++|+||+++.+.+.+
T Consensus 256 ~~L~pG~y---PSt~E--------p~~EgdflLRvfs~k~iD~ 287 (450)
T 3sg6_A 256 FFKDDGNY---KTRAE--------VKFEGDTLVNRIELKGIDF 287 (450)
T ss_dssp EETTSCEE---EEEEE--------EEEETTEEEEEEEEEEESC
T ss_pred eccCCCCC---Ccccc--------hhhccchhhheeccccCCc
Confidence 88999999 99998 6678999999999876543
No 13
>3alx_A Hemagglutinin, CDW150; viral protein-receptor complex, six-bladed beta-propeller FO immunoglobulin fold, beta-sandwich; HET: NAG; 3.15A {Measles virus} PDB: 3alw_A*
Probab=61.23 E-value=9.4 Score=38.04 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=40.6
Q ss_pred ccCceeeeEeccCceeee----------------eecCCCCceEEEEEEeEeCCCceEEE-Eeeeeee
Q psy294 332 DCHQSYNVVSTRGQLKTL----------------DCVPPLHRQVIIVLTQLEGSGGFSVS-HHLTHRL 382 (416)
Q Consensus 332 d~~~~~nv~s~rg~l~~~----------------d~vPp~~rqv~~~~~~~~~~~~~~~~-~~~~~~~ 382 (416)
+-.-..|+.|.-|.|.+. -+|||+..-+||+..+++-..+|.|+ |.||+-+
T Consensus 240 ~~dl~i~I~s~fGPlI~hgsGMDlY~~~~~n~~WLtIPP~~~s~LG~INt~~~~~~f~V~PhiLT~~i 307 (559)
T 3alx_A 240 TVELKIKIASGFGPLITHGSGMDLYKSNHNNVYWLTIPPMKNLALGVINTLEWIPRFKVSPYRFTVPI 307 (559)
T ss_dssp SSCCCEEEECCCCSCCSCCSCCEEEECSSTTCEEEEECCBTTTBCCEEEEEECSSSCEEEEEESEEEC
T ss_pred ccCccEEEEeccCCceEcCCCcccccCCCCCcceEEcCCcCCceeeeeeeccccCceeEcccEEEecc
Confidence 555667888888876642 35999999999999999999999987 5566643
No 14
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=50.93 E-value=98 Score=25.08 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=45.8
Q ss_pred ceeEEEEEecCCceeEeeeecccccccccCCCCCceEEEEEecCCCCCcc------ccEEeeeEee-cCCcEEEEEeeec
Q psy294 163 LSCVLLTVLEPTEAEFTLFQEGQRNWEKSKRSPLDLCVVILRNKLSSTSV------RGFVGCHKML-ERDIYLVVCLAFN 235 (416)
Q Consensus 163 ~~~~~l~v~ep~e~~~~L~Q~~~r~~~~~~~~~~~ig~~v~r~~~~~~~v------~~~v~~~~~L-epG~YvVVp~tf~ 235 (416)
.-.|.|.|.++.++.|.|.-.. ...+-..+|... ...+ ...+...+.| +||.|-|...-|.
T Consensus 38 ~D~y~F~V~~~g~v~I~l~~~~----------~~~~~w~ly~~~--~nyv~y~~~~gn~~~~~~~~~~pGkYYl~Vy~y~ 105 (121)
T 3jqw_A 38 QDYFYFDVITPGEVKIDINKLG----------YGGATWVVYDEN--NNAVSYATDDGQNLSGKFKADKPGRYYIHLYMFN 105 (121)
T ss_dssp CEEEEEEESSCEEEEEEEEECS----------SSEEEEEEECTT--SCEEEECEECSSEEEEEEEECSCEEEEEEEEEEE
T ss_pred eeEEEEEeCCCCeEEEEEEecC----------CCcEEEEEEeCC--CCeEEEeccCCCEEEEEEEeCCCeeEEEEEEEec
Confidence 4568899999998888876532 123445555443 1111 1235567788 9999877776665
Q ss_pred ccccCcCCCCCCCCeEEEEE
Q psy294 236 HWHTGISDTAQYPEYLLAIH 255 (416)
Q Consensus 236 ~~~~~~~~p~~~~~f~LrI~ 255 (416)
+..+.|.|.|-
T Consensus 106 ---------~~~g~Y~l~i~ 116 (121)
T 3jqw_A 106 ---------GSYMPYRINIE 116 (121)
T ss_dssp ---------CSCEEEEEEEE
T ss_pred ---------CCCccEEEEEE
Confidence 23467888775
No 15
>2zb6_A Hemagglutinin protein; beta propeller, envelope protein, membrane, transmembrane, virion, viral protein; HET: NAG; 2.60A {Measles virus strain edmonston-b} PDB: 2zb5_A* 3alz_A* 2rkc_A* 3inb_A*
Probab=49.67 E-value=17 Score=35.65 Aligned_cols=50 Identities=26% Similarity=0.270 Sum_probs=40.1
Q ss_pred ccCceeeeEeccCceeee----------------eecCCCCceEEEEEEeEeCCCceEEEEe-eeee
Q psy294 332 DCHQSYNVVSTRGQLKTL----------------DCVPPLHRQVIIVLTQLEGSGGFSVSHH-LTHR 381 (416)
Q Consensus 332 d~~~~~nv~s~rg~l~~~----------------d~vPp~~rqv~~~~~~~~~~~~~~~~~~-~~~~ 381 (416)
+-.-..|+.|.-|.|.+. -+|||+..-+||+..+++-..+|.|+=+ ||+-
T Consensus 275 ~~dl~i~I~s~~GPlI~hgsGMDlY~~~~~n~~WLtIPP~~~s~LG~IN~~~~~~~f~V~PhiLT~~ 341 (481)
T 2zb6_A 275 TVELKIKIASGFGPLITHGSGMDLYKSNHNNVYWLTIPPMKNLALGVINTLEWIPRFKVSPYLFTVP 341 (481)
T ss_dssp TSCCCBEEEEECCSCCCCCSCCEEEECSSTTEEEEEECCCTTBSCCEEEEEECSSSCEEEEEESEEE
T ss_pred ccCccEEEEeccCCceEcCCCcccccCCCCCcceEEcCCcCCceeeeeeeccccCceeEccceEEec
Confidence 555667888888876642 3599999999999999999999999854 4653
No 16
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=27.46 E-value=2.4e+02 Score=22.67 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=42.2
Q ss_pred ceeEEEEEecCCceeEeeeecccccccccCCCCCceEEEEEecCCCCCccc------cEEeeeEeecCCcEEEEEeeecc
Q psy294 163 LSCVLLTVLEPTEAEFTLFQEGQRNWEKSKRSPLDLCVVILRNKLSSTSVR------GFVGCHKMLERDIYLVVCLAFNH 236 (416)
Q Consensus 163 ~~~~~l~v~ep~e~~~~L~Q~~~r~~~~~~~~~~~ig~~v~r~~~~~~~v~------~~v~~~~~LepG~YvVVp~tf~~ 236 (416)
.-.|.+.|.++.++.|+|.-... ..+-..+|....-...+. ..+...+.|+||.|-|-..-|.
T Consensus 40 ~D~y~f~v~~~g~v~I~l~~~~~----------~~~~w~ly~~~dl~nyv~y~~~~gn~~~~~~~~~pGkYYl~Vy~y~- 108 (119)
T 1nqj_A 40 RDYYSFEVKEEGEVNIELDKKDE----------FGVTWTLHPESNINDRITYGQVDGNKVSNKVKLRPGKYYLLVYKYS- 108 (119)
T ss_dssp EEEEEEEESSCEEEEEEEEESSS----------SEEEEEEEECC----CCEECEEETTEEEEEEEECSEEEEEEEEEEE-
T ss_pred cEEEEEECCCCCeEEEEEEeCCC----------CCEEEEEEccCCCccceEEeecCCCcEEEEEEcCCcEEEEEEEEeC-
Confidence 45688889998888888855432 234445665432112111 1234567899999877665552
Q ss_pred cccCcCCCCCCCCeEEEE
Q psy294 237 WHTGISDTAQYPEYLLAI 254 (416)
Q Consensus 237 ~~~~~~~p~~~~~f~LrI 254 (416)
..+.|.|.|
T Consensus 109 ---------~~g~Y~l~v 117 (119)
T 1nqj_A 109 ---------GSGNYELRV 117 (119)
T ss_dssp ---------SCEEEEEEE
T ss_pred ---------CCceEEEEE
Confidence 136777766
Done!