RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy294
(416 letters)
>gnl|CDD|216041 pfam00648, Peptidase_C2, Calpain family cysteine protease.
Length = 302
Score = 116 bits (293), Expect = 9e-30
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 7/83 (8%)
Query: 57 HAYSVLDVRDMDGT----RLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGAS 109
HAYSV V++++ +L++LRNPWG W G WSD S W P+ RA L +
Sbjct: 220 HAYSVTGVKEVNYRGEKQKLIRLRNPWGQVEWTGAWSDGSPEWRFIDPDERARLQLQFEE 279
Query: 110 DGVFWISFEDVLKYFDCIDICKV 132
DG FW+SFED L++F ++IC +
Sbjct: 280 DGEFWMSFEDFLRHFSRLEICNL 302
Score = 89.1 bits (221), Expect = 6e-20
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 5 RLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKHAYSV 61
+L++LRNPWG W G WSD S W P+ RA L + DG FW+SFED L+H +S
Sbjct: 238 KLIRLRNPWGQVEWTGAWSDGSPEWRFIDPDERARLQLQFEEDGEFWMSFEDFLRH-FSR 296
Query: 62 LDV 64
L++
Sbjct: 297 LEI 299
>gnl|CDD|128526 smart00230, CysPc, Calpain-like thiol protease family.
Calpain-like thiol protease family (peptidase family
C2). Calcium activated neutral protease (large subunit).
Length = 318
Score = 116 bits (292), Expect = 2e-29
Identities = 41/89 (46%), Positives = 52/89 (58%), Gaps = 6/89 (6%)
Query: 57 HAYSVLDVRDMDGTR--LLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDG 111
HAYSV DVR++ G R LL+LRNPWG W G WSDDS W + L DG
Sbjct: 229 HAYSVTDVREVQGRRQELLRLRNPWGQVEWNGPWSDDSPEWRSVSASEKKNLGLTFDDDG 288
Query: 112 VFWISFEDVLKYFDCIDICKVHCAGWNEG 140
FW+SFED L++FD ++IC ++ E
Sbjct: 289 EFWMSFEDFLRHFDKVEICNLN-PDSLEE 316
Score = 82.0 bits (203), Expect = 2e-17
Identities = 27/58 (46%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 3 GTRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKH 57
LL+LRNPWG W G WSDDS W + L DG FW+SFED L+H
Sbjct: 243 RQELLRLRNPWGQVEWNGPWSDDSPEWRSVSASEKKNLGLTFDDDGEFWMSFEDFLRH 300
>gnl|CDD|238004 cd00044, CysPc, Calpains, domains IIa, IIb; calcium-dependent
cytoplasmic cysteine proteinases, papain-like. Functions
in cytoskeletal remodeling processes, cell
differentiation, apoptosis and signal transduction.
Length = 315
Score = 107 bits (269), Expect = 3e-26
Identities = 42/79 (53%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Query: 57 HAYSVLDVRDMD--GTRLLQLRNPWGHFSWKGDWSDDSNLW--TPELRATLMPRGASDGV 112
HAYSVLDVR++ G RLL+LRNPWG W G WSDDS+ W R L+ G DG
Sbjct: 237 HAYSVLDVREVQEEGLRLLRLRNPWGVGEWWGGWSDDSSEWWVIDAERKKLLLSGKDDGE 296
Query: 113 FWISFEDVLKYFDCIDICK 131
FW+SFED L+ FD + +C
Sbjct: 297 FWMSFEDFLRNFDGLYVCN 315
Score = 78.5 bits (194), Expect = 4e-16
Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 3 GTRLLQLRNPWGHFSWKGDWSDDSNLW--TPELRATLMPRGASDGVFWISFEDVLKHAYS 60
G RLL+LRNPWG W G WSDDS+ W R L+ G DG FW+SFED L++ +
Sbjct: 251 GLRLLRLRNPWGVGEWWGGWSDDSSEWWVIDAERKKLLLSGKDDGEFWMSFEDFLRN-FD 309
Query: 61 VLDV 64
L V
Sbjct: 310 GLYV 313
>gnl|CDD|218422 pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase. This
family consists of several bacterial proteins which are
closely related to NAD-glutamate dehydrogenase found in
Streptomyces clavuligerus. Glutamate dehydrogenases
(GDHs) are a broadly distributed group of enzymes that
catalyze the reversible oxidative deamination of
glutamate to ketoglutarate and ammonia.
Length = 1526
Score = 30.2 bits (69), Expect = 2.7
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 32 ELRATL--MPRGASDGVFWISFEDVLKHAYSVLDVRDMDGTRLLQLRNPWGHF 82
L L PR D +F IS +++L+ A +L +++ RL R+P+G F
Sbjct: 292 ALLNILETYPR---DELFQISEDELLEIAMGILSLQERPRVRLFLRRDPFGRF 341
>gnl|CDD|235368 PRK05225, PRK05225, ketol-acid reductoisomerase; Validated.
Length = 487
Score = 29.9 bits (68), Expect = 3.0
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 241 ISDTAQYPEYLLAIHSSKPVLVE 263
ISDTA+Y YL + H++ P+L +
Sbjct: 412 ISDTAEYGNYLFS-HAAVPLLKD 433
>gnl|CDD|179661 PRK03846, PRK03846, adenylylsulfate kinase; Provisional.
Length = 198
Score = 29.1 bits (66), Expect = 3.2
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 334 HQSYNVVSTRGQLKTLDCVPPLHRQVIIVLTQLEGSGGFSVSHHLTHRLASRG 386
HQ + R QL H+ V++ T L GSG +V+ L L G
Sbjct: 7 HQHPVTKAQREQLHG-------HKGVVLWFTGLSGSGKSTVAGALEEALHELG 52
>gnl|CDD|139929 PRK13869, PRK13869, plasmid-partitioning protein RepA; Provisional.
Length = 405
Score = 29.3 bits (65), Expect = 3.7
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 341 STRGQLKTLDCVP----PLHRQVIIVLTQLEGSGGFSVSHHLTHRLASRG 386
STRG+ +++D VP H QVI V GSG + S HL LA +G
Sbjct: 102 STRGR-ESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQG 150
>gnl|CDD|234215 TIGR03453, partition_RepA, plasmid partitioning protein RepA.
Members of this family are the RepA (or ParA) protein
involved in replicon partitioning. All known examples
occur in bacterial species with two or more replicons,
on a plasmid or the smaller chromosome. Note that an
apparent exception may be seen as a pseudomolecule from
assembly of an incompletely sequenced genome. Members of
this family belong to a larger family that also includes
the enzyme cobyrinic acid a,c-diamide synthase, but
assignment of that name to members of this family would
be in error [Mobile and extrachromosomal element
functions, Plasmid functions].
Length = 387
Score = 28.8 bits (65), Expect = 5.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 356 HRQVIIVLTQLEGSGGFSVSHHLTHRLASRG 386
H QVI V GSG + + HL LA RG
Sbjct: 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRG 133
>gnl|CDD|238796 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl transferase
catalyzes enolpyruvyl transfer as part of the first step
in the biosynthesis of peptidoglycan, a component of the
bacterial cell wall. The reaction is phosphoenolpyruvate
+ UDP-N-acetyl-D-glucosamine = phosphate +
UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This
enzyme is of interest as a potential target for
anti-bacterial agents. The only other known enolpyruvyl
transferase is the related
5-enolpyruvylshikimate-3-phosphate synthase.
Length = 400
Score = 28.2 bits (64), Expect = 8.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 304 GLVVMVENRYENRWIHV 320
G V+ E +ENR++HV
Sbjct: 310 GTSVITETIFENRFMHV 326
>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic
domains. Alanine dehydrogenase (L-AlaDH) catalyzes the
NAD-dependent conversion of pyruvate to L-alanine via
reductive amination. Like formate dehydrogenase and
related enzymes, L-AlaDH is comprised of 2 domains
connected by a long alpha helical stretch, each
resembling a Rossmann fold NAD-binding domain. The
NAD-binding domain is inserted within the linear
sequence of the more divergent catalytic domain. Ligand
binding and active site residues are found in the cleft
between the subdomains. L-AlaDH is typically hexameric
and is critical in carbon and nitrogen metabolism in
micro-organisms.
Length = 359
Score = 28.1 bits (64), Expect = 9.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 166 VLLTVLEPTEAEFTLFQEGQ 185
+++ V EP E+ L +EGQ
Sbjct: 70 LIVKVKEPLPEEYDLLREGQ 89
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.469
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,499,341
Number of extensions: 2034945
Number of successful extensions: 1415
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1403
Number of HSP's successfully gapped: 21
Length of query: 416
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 317
Effective length of database: 6,546,556
Effective search space: 2075258252
Effective search space used: 2075258252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)