RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy294
(416 letters)
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine
proteinases, like, EF-hand, structural genomics,
structural genomics CON SGC; HET: AR7; 2.20A {Homo
sapiens}
Length = 326
Score = 110 bits (277), Expect = 1e-27
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 22 WSDDSNLWTPELRA---------TLMPRGASDGVFWISFEDVLKHAYSVLDVRDMD---- 68
+NL+ +A ++ A++ S + V HAYSV V +++
Sbjct: 198 KKPPANLYQIIRKALCAGSLLGCSIDVYSAAEAEAITSQKLVKSHAYSVTGVEEVNFQGH 257
Query: 69 GTRLLQLRNPWGHFSWKGDWSDDSNLWT--PELRATLMPRGASDGVFWISFEDVLKYFDC 126
+L++LRNPWG W G WSDD+ W R + + DG FW+S D ++ F
Sbjct: 258 PEKLIRLRNPWGEVEWSGAWSDDAPEWNHIDPRRKEELDKKVEDGEFWMSLSDFVRQFSR 317
Query: 127 IDICKVH 133
++IC +
Sbjct: 318 LEICNLS 324
Score = 81.6 bits (201), Expect = 2e-17
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 2 DGTRLLQLRNPWGHFSWKGDWSDDSNLWT--PELRATLMPRGASDGVFWISFEDVLKHAY 59
+L++LRNPWG W G WSDD+ W R + + DG FW+S D ++ +
Sbjct: 257 HPEKLIRLRNPWGEVEWSGAWSDDAPEWNHIDPRRKEELDKKVEDGEFWMSLSDFVRQ-F 315
Query: 60 SVLDV 64
S L++
Sbjct: 316 SRLEI 320
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol
protease, structural genomics consortium, SGC,
hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB:
2p0r_A*
Length = 339
Score = 96.8 bits (240), Expect = 1e-22
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 22 WSDDSNLWTPELRA---------TLMPRGASDGVFWISFEDVLKHAYSVLDVRDMD---- 68
N + +A + R A++ F + HAYSV + +
Sbjct: 202 KEAPENFYEILEKALKRGSLLGCFIDTRSAAESEARTPFGLIKGHAYSVTGIDQVSFRGQ 261
Query: 69 GTRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKYFD 125
L+++RNPWG W G WSD S W P + L DG FW++F+D +FD
Sbjct: 262 RIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAFKDFKAHFD 321
Query: 126 CIDICKVH 133
++IC +
Sbjct: 322 KVEICNLT 329
Score = 67.9 bits (165), Expect = 8e-13
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 3 GTRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKHAY 59
L+++RNPWG W G WSD S W P + L DG FW++F+D H +
Sbjct: 262 RIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAFKDFKAH-F 320
Query: 60 SVLDV 64
+++
Sbjct: 321 DKVEI 325
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 96.8 bits (240), Expect = 9e-22
Identities = 59/281 (20%), Positives = 95/281 (33%), Gaps = 66/281 (23%)
Query: 23 SDDSNLWTPELRAT----LMPRGASDGVFWISFED-------VLKHAYSVLDVRDMDG-- 69
S+L+ L+A L+ G S + I + V HAYSV D + +
Sbjct: 219 KAPSDLYQIILKALERGSLL--GCSINISDIRDLEAITFKNLVRGHAYSVTDAKQVTYQG 276
Query: 70 --TRLLQLRNPWGHFSWKGDWSDDS---NLWTPELRATLMPRGASDGVFWISFEDVLKYF 124
L+++RNPWG WKG WSD+S N P R + DG FW+SF D ++ F
Sbjct: 277 QRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYERE-QLRVKMEDGEFWMSFRDFIREF 335
Query: 125 DCIDICKVHCAGWNEGHFTGWNEVRLSGTLPPLCS----VRHLSCVL------LTVLEPT 174
++IC + WN GT + + + + + E
Sbjct: 336 TKLEICNLTPDALKSRTLRNWNTTFYEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVD 395
Query: 175 EAE------------FTLFQEGQRNWEKSKRSPLDLCVVILR--------------NKLS 208
+A+ L Q+ +R + R + + + +
Sbjct: 396 DADDYDSRESGCSFLLALMQKHRRRERRFGRDMETIGFAVYQVPRELAGQPVHLKRDFFL 455
Query: 209 STSVRGF---------VGCHKMLERDIYLVVCLAFNHWHTG 240
+ + R V L Y+VV F G
Sbjct: 456 ANASRAQSEHFINLREVSNRIRLPPGEYIVVPSTFEPNKEG 496
Score = 69.8 bits (170), Expect = 6e-13
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 2 DGTRLLQLRNPWGHFSWKGDWSDDS---NLWTPELRATLMPRGASDGVFWISFEDVLKHA 58
L+++RNPWG WKG WSD+S N P R + DG FW+SF D ++
Sbjct: 277 QRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYERE-QLRVKMEDGEFWMSFRDFIREF 335
Query: 59 YSVLDVRDMDGTRLLQLRNPWGHFSWKGDWSDDSN 93
+ + W ++G W S
Sbjct: 336 TKLEICNLTPDALKSRTLRNWNTTFYEGTWRRGST 370
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor,
alpha-ketoamide, hydrolase, thiol protease; HET: K2Z;
1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A*
2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A
2ary_A 1zcm_A* 1mdw_A
Length = 339
Score = 88.3 bits (218), Expect = 1e-19
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 15/125 (12%)
Query: 24 DDSNLWTPELRA---------TLMPRGASDGVFWISFEDVLKHAYSVLDVRDMDG----T 70
S+L+ L+A ++ D V HAYSV D + +
Sbjct: 205 APSDLYQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAYSVTDAKQVTYQGQRV 264
Query: 71 RLLQLRNPWGHFSWKGDWSDDSNLWT--PELRATLMPRGASDGVFWISFEDVLKYFDCID 128
L+++RNPWG WKG WSD+S W + DG FW+SF D ++ F ++
Sbjct: 265 NLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVKMEDGEFWMSFRDFIREFTKLE 324
Query: 129 ICKVH 133
IC +
Sbjct: 325 ICNLT 329
Score = 61.3 bits (148), Expect = 1e-10
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 3 GTRLLQLRNPWGHFSWKGDWSDDSNLWT--PELRATLMPRGASDGVFWISFEDVLKHAYS 60
L+++RNPWG WKG WSD+S W + DG FW+SF D ++ ++
Sbjct: 263 RVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVKMEDGEFWMSFRDFIRE-FT 321
Query: 61 VLDV 64
L++
Sbjct: 322 KLEI 325
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 88.7 bits (219), Expect = 4e-19
Identities = 68/372 (18%), Positives = 117/372 (31%), Gaps = 62/372 (16%)
Query: 23 SDDSNLWTPELRA---------TLMPRGASDGVFWISFEDVLKHAYSVLDVRDMDGT--- 70
NL+ +A ++ A+D + V HAYSV +++ +
Sbjct: 219 KPPPNLFKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGAEEVESSGSL 278
Query: 71 -RLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKYFDC 126
+L+++RNPWG W G W+D+ W PE+RA L R DG FW+SF D L+++
Sbjct: 279 QKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTERQ-EDGEFWMSFSDFLRHYSR 337
Query: 127 IDICKVHCAGWNEGHFTGWNEVRLSGTLPPLCS----VRHLSCV------LLTVLEPTEA 176
++IC + + W ++ G + + + L+ + E E
Sbjct: 338 LEICNLTPDTLTCDSYKKWKLTKMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDED 397
Query: 177 E----------FTLFQEGQRNWEKSKRSPLDLCVVILRNKLSSTSVRGFVGCHKMLERDI 226
+ L Q+ +R K + I V + +I
Sbjct: 398 DEDGERGCTFLVGLIQKHRRRQRKMGEDMHTIGFGIYE-----------VPEELTGQTNI 446
Query: 227 YLVVCLAFNHWHTGISDT-AQYPEYLLAIHSSKPVLVEQIEPSEYILADTIISLTLAKGQ 285
+L SDT E L + P EY ++ T +
Sbjct: 447 HLSKNFFLTTRARERSDTFINLREVLNRFK---------LPPGEY----VLVPSTFEPHK 493
Query: 286 RHEGRERMTAYYLTTGWAGLVVMVENRYENRWIHVRCDCGIFWVFCDCHQSYNVVSTRGQ 345
+ R+ + + N E G +F +S
Sbjct: 494 NGDFCIRVFSEKKADYQTVDDEIEANIEEIEANEEDIGDGFRRLFAQLAGEDAEISAFEL 553
Query: 346 LKTLDCVPPLHR 357
L V
Sbjct: 554 QTILRRVLAKRE 565
Score = 67.5 bits (164), Expect = 3e-12
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 4 TRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKHAYS 60
+L+++RNPWG W G W+D+ W PE+RA L R DG FW+SF D L+H
Sbjct: 279 QKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTERQ-EDGEFWMSFSDFLRHYSR 337
Query: 61 VLDVRDMDGTRLLQLRNPWGHFSWKGDWSDDSN 93
+ T W G+W S
Sbjct: 338 LEICNLTPDTLTCDSYKKWKLTKMDGNWRRGST 370
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 3e-05
Identities = 67/392 (17%), Positives = 117/392 (29%), Gaps = 127/392 (32%)
Query: 33 LRATLMPRGASDGVFWISF------EDVLKHAYSVLDVRDMDGT-RLLQLRNPWGHFSWK 85
+ + +FW++ E VL+ +L D + T R N
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI------- 223
Query: 86 GDWSDDSNLWTPELRATLMPRGAS------DGVFWISFEDVLKYFDCIDICKVHCAGWNE 139
+ ELR L + V + F+ + CK+
Sbjct: 224 ---KLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNA--KAWNAFN-LS-CKILLT---- 271
Query: 140 GHFTGWNEV--RLSGTLPPLCSVRHLSCVLLTVLEPTEAEFTLFQEGQRNW--------- 188
T + +V LS S+ H S L P E + +L +
Sbjct: 272 ---TRFKQVTDFLSAATTTHISLDHHS----MTLTPDEVK-SLL----LKYLDCRPQDLP 319
Query: 189 -EKSKRSPLDLCVV--ILRNKLS-------------STSVRGFVGCHKMLE-RDIY--LV 229
E +P L ++ +R+ L+ +T + + + E R ++ L
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 230 VCLAFNHWHTGISDTAQYPEYLLAI--HSSKPVLVEQIEPSEYILADTIISLTLAKGQRH 287
V F +A P LL++ V + + + +L + Q
Sbjct: 380 V---FP-------PSAHIPTILLSLIWFDVIKSDVMVV-------VNKLHKYSLVEKQPK 422
Query: 288 EGRERMTAYYLTTGWAGLVVMVENRYENRWIHVRCDCGIFWVFCDCHQSYNVVSTRGQLK 347
E + + YL L V +EN Y +H + YN+ T
Sbjct: 423 ESTISIPSIYLE-----LKVKLENEYA---LHRSI---V--------DHYNIPKT---FD 460
Query: 348 TLDCVPPLHRQVIIVLTQLEGSGGFS-VSHHL 378
+ D +PP Q +S + HHL
Sbjct: 461 SDDLIPPYLDQYF-----------YSHIGHHL 481
Score = 35.2 bits (80), Expect = 0.043
Identities = 32/207 (15%), Positives = 68/207 (32%), Gaps = 53/207 (25%)
Query: 160 VRHLSCVLLTVLEPTEAEFTLFQEGQRNWEKSKRSPLDLCVVILRNKLSSTSVRGFVGCH 219
+ + + ++L E + + K S L +K V+ FV
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIM-------SKDAVSGTLRLFWTLLSKQEEM-VQKFVE-- 84
Query: 220 KMLERDI-YLVVCLAFNHWHTGISD----TAQYPEYLLAIHSSKPVL----VEQIEPSEY 270
++L + +L+ + T T Y E +++ V V +++P
Sbjct: 85 EVLRINYKFLM-----SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP--- 136
Query: 271 ILADTIISLT--LAKGQRHEGRERMTAYYLTTGWAG-----LVVMVENRYENRWIHVRCD 323
+ L L + + + + G G + + V Y+ + + D
Sbjct: 137 -----YLKLRQALLELRPAKN---VLID----GVLGSGKTWVALDVCLSYK---VQCKMD 181
Query: 324 CGIFWV-FCDCHQSYNVVSTRGQLKTL 349
IFW+ +C+ V+ L+ L
Sbjct: 182 FKIFWLNLKNCNSPETVLE---MLQKL 205
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 3e-05
Identities = 58/326 (17%), Positives = 104/326 (31%), Gaps = 116/326 (35%)
Query: 167 LLTVLEPTEAE-FTLFQEGQRNWE----------KSKRSPLDLCVVILRNKLSSTSVRGF 215
L + A+ +F GQ N + ++ + + LS R
Sbjct: 145 LFRAVGEGNAQLVAIFG-GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI-RTT 202
Query: 216 VGCHKMLER--DIYLVVCLAFNHWHTGISDTAQYP--EYLLAIHSSKPVL-VEQIEPSEY 270
+ K+ + +I W + + + P +YLL+I S P++ V Q+ + Y
Sbjct: 203 LDAEKVFTQGLNIL--------EW---LENPSNTPDKDYLLSIPISCPLIGVIQL--AHY 249
Query: 271 ILADTIISLTLAKGQRHEGRERMTAYYLTTGWAGLVVMV--------ENRYEN--RWIHV 320
++ ++ T E R + T GLV V E+ + + + I V
Sbjct: 250 VVTAKLLGFTPG-----ELRSYLKG--ATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 321 RCDCGIFWVFCDCHQSYNVVS--------------------------TRGQL-KTLDCVP 353
+F++ C+++Y S T+ Q+ ++
Sbjct: 303 -----LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 354 ---PLHRQVII---------VLTQLEGSGGFSVS-HHLTHRLASRGGLHDWGPSGV--SH 398
P +QV I V++ G S + L L PSG+ S
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVS------GPPQSLYGLNLTLRKAK-----APSGLDQSR 406
Query: 399 LP----PLDPGVEGL------HSPRL 414
+P L L HS L
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLL 432
Score = 32.3 bits (73), Expect = 0.32
Identities = 53/326 (16%), Positives = 89/326 (27%), Gaps = 114/326 (34%)
Query: 129 ICKVHCAGWNEGHFTGWNEVRLSGTLPPLCSVRHLSCVLLTVL---EPTEAEFT------ 179
K+ G+ G L G H ++ V + F
Sbjct: 252 TAKLL--GFTPGELRS----YLKGATG------HSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 180 ---LFQEGQRNWEKSKRSPLDLCVVILRNKLSSTSVRGFVG--CHKMLERDIYLVVCLAF 234
LF G R +E + L ++ S+ G ML +
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSIL-------EDSLENNEGVPSP-ML------SI---- 341
Query: 235 NHWHTGISDTAQYPEYLLAIHSSKPVLVEQIE------PSEYILADTIISL-----TLAK 283
+ ++ Q +Y+ +S P +Q+E +++ SL TL K
Sbjct: 342 ----SNLTQ-EQVQDYVNKTNSHLPA-GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 284 -------GQ-RHEGRER----------MTA----YYLTTGWAGLVVMVENRYENRWIHVR 321
Q R ER + + + L ++ +
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL----VPASDLINKDLVKNNVSFN 451
Query: 322 -CDCGIFWVFCDCHQSYNVVSTR-GQ-LKTLD--CVPPLHRQVIIVLTQLEGSGGFSVSH 376
D I V T G L+ L + +I + + E + F +H
Sbjct: 452 AKDIQI-----------PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Query: 377 HLTHRLASRGGLHDWGPSGVSHLPPL 402
L D+GP G S L L
Sbjct: 501 IL-----------DFGPGGASGLGVL 515
Score = 30.4 bits (68), Expect = 1.3
Identities = 69/393 (17%), Positives = 111/393 (28%), Gaps = 156/393 (39%)
Query: 29 WTP-ELRATLMPRGAS---DGVF----------WISFEDVLKHAYSVLDVRDMDGTRLLQ 74
+TP ELR+ L +GA+ G+ W SF ++ A +VL
Sbjct: 258 FTPGELRSYL--KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL------------ 303
Query: 75 LRNPWGHFSWKGDWSDDSNLWTPELRATL-MPRGASDGVFWISFEDVLKYFDCIDICKVH 133
F + G +R P + +L+ D ++
Sbjct: 304 -------F-FIG------------VRCYEAYPNTSLP-------PSILE--DSLEN---- 330
Query: 134 CAGWNEGHFTGWNEVRLSGTLP-PLCSVRHLSCVLLTVLEPTEAEFTLFQEGQRNWEKSK 192
NEG +P P+ S+ +L+ ++ + N
Sbjct: 331 ----NEG-------------VPSPMLSISNLT---QEQVQDYVNKT--------N----S 358
Query: 193 RSPLDLCVVI-LRNKLSSTSVRGFV--GCHKMLERDIYLVVCLAFNHWHTGISDTAQYPE 249
P V I L N + V G + L L + L +G+ D ++ P
Sbjct: 359 HLPAGKQVEISLVN-----GAKNLVVSGPPQSLYG---LNLTLRKAKAPSGL-DQSRIP- 408
Query: 250 YLLAIHSS-KPVLVEQ---I-EP--SEYILADT--IISLTLAKGQ-RHEGRERMTAYYLT 299
S K + + P S L +I+ L K ++ Y T
Sbjct: 409 -----FSERKLKFSNRFLPVASPFHSHL-LVPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 300 TGWAGLVVMVENRYEN--RWI-HVRCDCGIFWVFCDCHQSYNVVSTRGQLKTLDCVPPLH 356
+ L V+ + E I + W T H
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVK----WE-----------------TTTQF-KATH 500
Query: 357 RQVIIVLTQLEGSGGFSVSHHLTHRLASRGGLH 389
I+ G GG S LTHR G+
Sbjct: 501 ---ILDF----GPGGASGLGVLTHRNKDGTGVR 526
>1lj8_A Mannitol dehydrogenase; oxidoreductase, NAD, long-chain
dehydrogenase; HET: NAD; 1.70A {Pseudomonas fluorescens}
SCOP: a.100.1.9 c.2.1.6 PDB: 1m2w_A*
Length = 493
Score = 28.8 bits (65), Expect = 4.3
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 368 GSGGFSVSHH--LTHRLASRGGLHDWGPSGVSHLPPLDPGVEGLH 410
G GGF +H T L + G DW GV + L
Sbjct: 33 GVGGFHRAHQAYYTDALMNTGEGLDWSICGVGLRSEDRKARDDLA 77
>1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, P
structure initiative, joint center for structural
genomics, hydrolase; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 483
Score = 28.0 bits (61), Expect = 6.5
Identities = 9/87 (10%), Positives = 16/87 (18%), Gaps = 3/87 (3%)
Query: 15 HFSWKGDWSDDSNLWTPELRATLMPRGASDGV---FWISFEDVLKHAYSVLDVRDMDGTR 71
H W + P L + + + Y + + T
Sbjct: 222 HGIWLNRFRYRGEDAYPLLDEWIEKKLPEWEPKNPWDTQMSPAAMDMYKFYGMLPIGDTV 281
Query: 72 LLQLRNPWGHFSWKGDWSDDSNLWTPE 98
+ K W E
Sbjct: 282 RNGSWKYHYNLETKKKWFGKFGGIDNE 308
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met
nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A
{Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A*
1m7h_A* 3cr7_A*
Length = 211
Score = 27.2 bits (61), Expect = 8.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 356 HRQVIIVLTQLEGSGGFSVSHHLTHRLASRGGLH 389
R + I LT L SG +++ L H+L +H
Sbjct: 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVH 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.469
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,816,645
Number of extensions: 405850
Number of successful extensions: 809
Number of sequences better than 10.0: 1
Number of HSP's gapped: 787
Number of HSP's successfully gapped: 30
Length of query: 416
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 320
Effective length of database: 4,021,377
Effective search space: 1286840640
Effective search space used: 1286840640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)