RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy294
(416 letters)
>d2r9fa1 d.3.1.3 (A:33-354) Calpain large subunit, catalytic domain
(domain II) {Rat (Rattus norvegicus), mu-type [TaxId:
10116]}
Length = 322
Score = 102 bits (254), Expect = 6e-25
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 57 HAYSVLDVRDMDG----TRLLQLRNPWGHFSWKGDWSDDSNLWT--PELRATLMPRGASD 110
HAYSV D + + L+++RNPWG WKG WSD+S W + D
Sbjct: 240 HAYSVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVKMED 299
Query: 111 GVFWISFEDVLKYFDCIDICKV 132
G FW+SF D ++ F ++IC +
Sbjct: 300 GEFWMSFRDFIREFTKLEICNL 321
Score = 77.1 bits (189), Expect = 3e-16
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 3 GTRLLQLRNPWGHFSWKGDWSDDSNLWT--PELRATLMPRGASDGVFWISFEDVLKHAYS 60
L+++RNPWG WKG WSD+S W + DG FW+SF D ++ ++
Sbjct: 256 RVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVKMEDGEFWMSFRDFIRE-FT 314
Query: 61 VLDV 64
L++
Sbjct: 315 KLEI 318
>d1ziva1 d.3.1.3 (A:28-337) Calpain large subunit, catalytic domain
(domain II) {Human (Homo sapiens), calpain 9 [TaxId:
9606]}
Length = 310
Score = 101 bits (252), Expect = 8e-25
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 54 VLKHAYSVLDVRDMDG----TRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPR 106
+ HAYSV + + L+++RNPWG W G WSD S W P + L
Sbjct: 224 IKGHAYSVTGIDQVSFRGQRIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHT 283
Query: 107 GASDGVFWISFEDVLKYFDCIDICKV 132
DG FW++F+D +FD ++IC +
Sbjct: 284 ALDDGEFWMAFKDFKAHFDKVEICNL 309
Score = 74.9 bits (183), Expect = 1e-15
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 3 GTRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKHAY 59
L+++RNPWG W G WSD S W P + L DG FW++F+D H +
Sbjct: 243 RIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAFKDFKAH-F 301
Query: 60 SVLDV 64
+++
Sbjct: 302 DKVEI 306
>d1mdwa_ d.3.1.3 (A:) Calpain large subunit, catalytic domain
(domain II) {Rat (Rattus norvegicus), M-type [TaxId:
10116]}
Length = 323
Score = 99.5 bits (247), Expect = 5e-24
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 8/83 (9%)
Query: 57 HAYSVLDVRDMDG----TRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGAS 109
HAYSV +++ +L+++RNPWG W G W+D+ W PE+RA L R
Sbjct: 241 HAYSVTGAEEVESSGSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTER-QE 299
Query: 110 DGVFWISFEDVLKYFDCIDICKV 132
DG FW+SF D L+++ ++IC +
Sbjct: 300 DGEFWMSFSDFLRHYSRLEICNL 322
Score = 76.4 bits (187), Expect = 4e-16
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 3 GTRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFEDVLKHAY 59
+L+++RNPWG W G W+D+ W PE+RA L R DG FW+SF D L+H Y
Sbjct: 257 LQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTER-QEDGEFWMSFSDFLRH-Y 314
Query: 60 SVLDV 64
S L++
Sbjct: 315 SRLEI 319
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 30.2 bits (67), Expect = 0.27
Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 5/125 (4%)
Query: 61 VLDVRDMDGTRLLQLRNPWGHFSWKGDWSDDSNLWTPELRATLMPRGASDGVFWISFEDV 120
+L+ +++ + L +P+ + T + TL P F + FE +
Sbjct: 31 ILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQI 90
Query: 121 LKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGTLPPLCSVRHLSCVLLTVLEPTEAEFTL 180
+ + + + G V + T L RH S +L P TL
Sbjct: 91 --QKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAEL---RHWSDMLANPRRPIAQWHTL 145
Query: 181 FQEGQ 185
E +
Sbjct: 146 QVEEE 150
>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 122
Score = 26.6 bits (59), Expect = 2.7
Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 354 PLHRQ-VIIVLTQLEGSGGFSVSHHLTHRLASRGG 387
P +Q IVL +S L GG
Sbjct: 1 PRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGG 35
>d1lj8a4 c.2.1.6 (A:1-286) Mannitol 2-dehydrogenase {Pseudomonas
fluorescens [TaxId: 294]}
Length = 286
Score = 27.7 bits (61), Expect = 2.9
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 368 GSGGFSVSHH--LTHRLASRGGLHDWGPSGVSHLPP 401
G GGF +H T L + G DW GV
Sbjct: 33 GVGGFHRAHQAYYTDALMNTGEGLDWSICGVGLRSE 68
>d1jqlb_ c.37.1.20 (B:) delta subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 140
Score = 26.1 bits (57), Expect = 4.8
Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 14/111 (12%)
Query: 112 VFWISFEDVLKYFDCIDICKVHCAG--------WNEGHFTGWNEVRLSGTLPPLCSVRHL 163
+ + D L + D + A ++ T WN + L + R
Sbjct: 20 AYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQT 79
Query: 164 SCVLLTVLEPTEAEFTLFQEGQRNWEKSKRSPLDLCVVILRNKLSSTSVRG 214
+LL P A + DL +++ NKLS
Sbjct: 80 LLLLLPENGPNAAINEQLL------TLTGLLHDDLLLIVRGNKLSKAQENA 124
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement
receptor 2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 294
Score = 26.4 bits (57), Expect = 7.2
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 5/91 (5%)
Query: 5 RLLQLRNPWGHFSWKGDWSDDSNLWTPELRATLMPRGASDGVFWISFEDVLKHAYSVLDV 64
+ L R P F+ + + L ++ + VL A L +
Sbjct: 62 QQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVN-----LIAIDSQVLCGAVKWLIL 116
Query: 65 RDMDGTRLLQLRNPWGHFSWKGDWSDDSNLW 95
+ Q P H G +++
Sbjct: 117 EKQKPDGVFQEDAPVIHQEMIGGLRNNNEKD 147
>d1tqza1 b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 133
Score = 25.5 bits (56), Expect = 7.5
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 20 GDWSDDSNLWTPELRATLMPRGASDGVFWISFED 53
DW D WT LR T + + +I ED
Sbjct: 34 SDWKLDQPDWTGRLRIT-----SKGKIAYIKLED 62
Score = 25.5 bits (56), Expect = 7.5
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 86 GDWSDDSNLWTPELRATLMPRGASDGVFWISFED 119
DW D WT LR T + + +I ED
Sbjct: 34 SDWKLDQPDWTGRLRIT-----SKGKIAYIKLED 62
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase
{Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 144
Score = 25.2 bits (55), Expect = 9.4
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 49 ISFEDVLKHAYSVLDVRDMDGTRLLQLRNP-------WGHF 82
S ++L+ D+R R L L+ P +GHF
Sbjct: 89 KSERELLEIVKKNFDLRPGVIVRDLDLKKPIYQRTAAYGHF 129
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.469
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,720,937
Number of extensions: 81678
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 18
Length of query: 416
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 328
Effective length of database: 1,199,356
Effective search space: 393388768
Effective search space used: 393388768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)