BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2942
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FNJ|A Chain A, Crystal Structure Of A B30.2SPRY DOMAIN-Containing Protein
Gustavus In Complex With Elongin B And Elongin C
Length = 226
Score = 183 bits (464), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 83/101 (82%), Positives = 93/101 (92%)
Query: 8 SLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF 67
SLVGS +QSWGWDLGRN+LYHDSKN G+TYP +LK DE F+VPDKFLV LDMDEGTLSF
Sbjct: 108 SLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSF 167
Query: 68 VVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGGLD 108
+VD QYLG+AFRGL+G+KLYPIVSAVWGHCEITM+YIGGLD
Sbjct: 168 IVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRYIGGLD 208
>pdb|2IHS|A Chain A, Crystal Structure Of The B30.2SPRY DOMAIN OF GUSTAVUS IN
Complex With A 20-Residue Vasa Peptide
pdb|2IHS|B Chain B, Crystal Structure Of The B30.2SPRY DOMAIN OF GUSTAVUS IN
Complex With A 20-Residue Vasa Peptide
Length = 214
Score = 181 bits (459), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 82/100 (82%), Positives = 92/100 (92%)
Query: 8 SLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF 67
SLVGS +QSWGWDLGRN+LYHDSKN G+TYP +LK DE F+VPDKFLV LDMDEGTLSF
Sbjct: 110 SLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSF 169
Query: 68 VVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGGL 107
+VD QYLG+AFRGL+G+KLYPIVSAVWGHCEITM+YIGGL
Sbjct: 170 IVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRYIGGL 209
>pdb|3F2O|A Chain A, Crystal Structure Of Human SplaRYANODINE RECEPTOR DOMAIN
AND SOCS BOX Containing 1 (Spsb1) In Complex With A
20-Residue Vasa Peptide
pdb|3F2O|B Chain B, Crystal Structure Of Human SplaRYANODINE RECEPTOR DOMAIN
AND SOCS BOX Containing 1 (Spsb1) In Complex With A
20-Residue Vasa Peptide
Length = 233
Score = 177 bits (449), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 78/102 (76%), Positives = 90/102 (88%)
Query: 7 TSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLS 66
T+LVG+N +SWGWDLGRNRLYHD KN TYP L+PDETF+VPD FLV LDMD+GTLS
Sbjct: 130 TTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLS 189
Query: 67 FVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGGLD 108
F+VDGQY+GVAFRGLKG+KLYP+VSAVWGHCEI M+Y+ GLD
Sbjct: 190 FIVDGQYMGVAFRGLKGKKLYPVVSAVWGHCEIRMRYLNGLD 231
>pdb|2JK9|A Chain A, The Structure Of Spla-Ryanodine Receptor Domain And Socs
Box Containing 1 In Complex With A Par-4 Peptide
Length = 212
Score = 177 bits (448), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 78/102 (76%), Positives = 90/102 (88%)
Query: 7 TSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLS 66
T+LVG+N +SWGWDLGRNRLYHD KN TYP L+PDETF+VPD FLV LDMD+GTLS
Sbjct: 109 TTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLS 168
Query: 67 FVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGGLD 108
F+VDGQY+GVAFRGLKG+KLYP+VSAVWGHCEI M+Y+ GLD
Sbjct: 169 FIVDGQYMGVAFRGLKGKKLYPVVSAVWGHCEIRMRYLNGLD 210
>pdb|2V24|A Chain A, Structure Of The Human Spry Domain-Containing Socs Box
Protein Ssb-4
Length = 208
Score = 176 bits (445), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 77/102 (75%), Positives = 89/102 (87%)
Query: 7 TSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLS 66
T+LVGS+ +SWGWDLGR+RLYHD KN G+ YP L PDE F +PD LV+LDMDEGTLS
Sbjct: 105 TALVGSDAESWGWDLGRSRLYHDGKNQPGVAYPAFLGPDEAFALPDSLLVVLDMDEGTLS 164
Query: 67 FVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGGLD 108
F+VDGQYLGVAFRGLKG+KLYP+VSAVWGHCE+TM+YI GLD
Sbjct: 165 FIVDGQYLGVAFRGLKGKKLYPVVSAVWGHCEVTMRYINGLD 206
>pdb|3EMW|A Chain A, Crystal Structure Of Human SplaRYANODINE RECEPTOR DOMAIN
AND SOCS BOX Containing 2 (Spsb2) In Complex With A
20-Residue Vasa Peptide
Length = 217
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 7 TSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLS 66
+L+GSN +SWGWD+GR +LYH SK YP + E VP++ LV+LDM+EGTL
Sbjct: 119 AALLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQ-GEQLEVPERLLVVLDMEEGTLG 177
Query: 67 FVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIG 105
+ + G YLG AFRGLKGR LYP VSAVWG C++ ++Y+G
Sbjct: 178 YAIGGTYLGPAFRGLKGRTLYPAVSAVWGQCQVRIRYLG 216
>pdb|2AFJ|A Chain A, Spry Domain-Containing Socs Box Protein 2 (Ssb-2)
Length = 226
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 7 TSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLS 66
+L+GSN +SWGWD+GR +LYH SK YP + E VVP++ LV+LDM+EGTL
Sbjct: 116 AALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQ-GEQLVVPERLLVVLDMEEGTLG 174
Query: 67 FVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIG 105
+ + G YLG AFRGLKGR LYP VSAVWG C++ ++Y+G
Sbjct: 175 YSIGGTYLGPAFRGLKGRTLYPSVSAVWGQCQVRIRYMG 213
>pdb|3EK9|A Chain A, Spry Domain-Containing Socs Box Protein 2: Crystal
Structure And Residues Critical For Protein Binding
Length = 213
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 7 TSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLS 66
+L+GSN +SWGWD+GR +LYH SK YP + E VVP++ LV+LDM+EGTL
Sbjct: 110 AALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQ-GEQLVVPERLLVVLDMEEGTLG 168
Query: 67 FVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIG 105
+ + G YLG AFRGLKGR LYP VSAVWG C++ ++Y+G
Sbjct: 169 YSIGGTYLGPAFRGLKGRTLYPSVSAVWGQCQVRIRYMG 207
>pdb|4IPA|A Chain A, Structure Of A Thermophilic Arx1
pdb|4IPA|B Chain B, Structure Of A Thermophilic Arx1
pdb|4IPA|C Chain C, Structure Of A Thermophilic Arx1
pdb|4IPA|D Chain D, Structure Of A Thermophilic Arx1
Length = 423
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 24 NRLYHDSKNNTGLTYPTLLKPDETFVVP 51
+++Y D K N G ++PT + P F+ P
Sbjct: 69 SKVYRDKKTNKGFSHPTTVSP-AAFITP 95
>pdb|3PIB|A Chain A, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 5.5
pdb|3PIB|B Chain B, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 5.5
pdb|3PIB|C Chain C, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 5.5
pdb|3PIB|D Chain D, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 5.5
Length = 236
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 86 LYPIVSAVWGHCEITMKYIGGLDLYTSYLT 115
LYP + GH ++ +K +GG L+ S+ T
Sbjct: 152 LYPADGGLRGHSQMALKLVGGGYLHCSFKT 181
>pdb|4EDO|A Chain A, Crystal Structure Of Far-Red Fluorescent Protein Eqfp650
pdb|4EDO|B Chain B, Crystal Structure Of Far-Red Fluorescent Protein Eqfp650
Length = 241
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 86 LYPIVSAVWGHCEITMKYIGGLDLYTSYLT 115
LYP S + GH ++ +K +GG L+ S T
Sbjct: 157 LYPADSGLRGHSQMALKLVGGGYLHCSLKT 186
>pdb|3PJB|A Chain A, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 4.0
pdb|3PJB|B Chain B, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 4.0
Length = 229
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 86 LYPIVSAVWGHCEITMKYIGGLDLYTSYLT 115
LYP + GH ++ +K +GG L+ S+ T
Sbjct: 145 LYPADGGLRGHSQMALKLVGGGYLHCSFKT 174
>pdb|3PJ7|A Chain A, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
pdb|3PJ7|B Chain B, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
pdb|3PJ7|C Chain C, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
pdb|3PJ7|D Chain D, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
Length = 229
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 86 LYPIVSAVWGHCEITMKYIGGLDLYTSYLT 115
LYP S + GH ++ +K +GG L+ S T
Sbjct: 145 LYPADSGLRGHSQMALKLVGGGYLHCSLKT 174
>pdb|3PJ5|A Chain A, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 5.0
pdb|3PJ5|B Chain B, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 5.0
Length = 224
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 86 LYPIVSAVWGHCEITMKYIGGLDLYTSYLT 115
LYP S + GH ++ +K +GG L+ S T
Sbjct: 146 LYPADSGLRGHSQMALKLVGGGYLHCSLKT 175
>pdb|4EDS|A Chain A, Crystal Structure Of Far-Red Fluorescent Protein Eqfp670
pdb|4EDS|B Chain B, Crystal Structure Of Far-Red Fluorescent Protein Eqfp670
Length = 241
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 86 LYPIVSAVWGHCEITMKYIGGLDLYTSYLT 115
LYP S + GH ++ +K +GG L+ S T
Sbjct: 157 LYPADSGLRGHNQMALKLVGGGYLHCSLKT 186
>pdb|1GZ7|A Chain A, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
pdb|1GZ7|B Chain B, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
pdb|1GZ7|C Chain C, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
pdb|1GZ7|D Chain D, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
Length = 534
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 21 LGRNRLYHDSKNNTG-LTYPTLL-----KPDETFVVPDKFLVILD 59
L ++ LY + + G L YP+L +PD TF+ D + ++ D
Sbjct: 281 LSQDTLYQATSDTPGVLAYPSLRLSYLPRPDGTFITDDMYALVRD 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,850,757
Number of Sequences: 62578
Number of extensions: 155664
Number of successful extensions: 284
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 266
Number of HSP's gapped (non-prelim): 18
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)