Query psy2942
Match_columns 117
No_of_seqs 117 out of 644
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 21:32:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3953|consensus 100.0 4.8E-29 1E-33 187.5 10.0 113 1-116 97-210 (242)
2 smart00449 SPRY Domain in SPla 99.8 1.5E-19 3.2E-24 122.5 11.7 89 6-104 29-120 (122)
3 PF00622 SPRY: SPRY domain; I 99.8 4.8E-19 1E-23 119.6 13.0 91 5-105 29-122 (124)
4 KOG0349|consensus 99.6 5.9E-16 1.3E-20 126.7 6.3 86 9-106 156-244 (725)
5 KOG2626|consensus 99.4 4.4E-13 9.4E-18 110.8 6.4 95 6-110 359-498 (544)
6 KOG4367|consensus 99.2 1.5E-10 3.2E-15 94.9 8.4 90 7-108 603-695 (699)
7 KOG4030|consensus 99.1 7.1E-10 1.5E-14 80.1 8.4 86 8-105 92-178 (197)
8 KOG2243|consensus 98.7 3.1E-08 6.8E-13 89.5 7.7 76 7-92 1132-1214(5019)
9 KOG1477|consensus 97.8 2E-05 4.4E-10 65.6 3.2 88 9-104 110-201 (469)
10 KOG1477|consensus 97.3 0.00012 2.5E-09 61.0 2.0 75 19-102 3-77 (469)
11 KOG2243|consensus 96.3 0.0025 5.5E-08 59.2 2.7 90 9-106 723-813 (5019)
12 KOG2242|consensus 94.1 0.0077 1.7E-07 51.3 -1.5 88 8-107 119-213 (558)
13 KOG2242|consensus 80.7 1.2 2.6E-05 38.2 2.2 68 14-93 8-79 (558)
14 PF15409 PH_8: Pleckstrin homo 71.9 4.5 9.8E-05 26.5 2.7 21 53-73 16-36 (89)
15 PF14041 Lipoprotein_21: LppP/ 64.8 34 0.00075 21.9 5.8 44 63-110 26-69 (89)
16 PF08893 DUF1839: Domain of un 49.7 23 0.00049 28.5 3.4 42 52-93 123-177 (319)
17 smart00560 LamGL LamG-like jel 46.5 40 0.00086 22.7 3.9 25 52-76 64-88 (133)
18 cd02175 GH16_lichenase lichena 38.5 1E+02 0.0023 22.4 5.4 40 56-95 143-185 (212)
19 PF08248 Tryp_FSAP: Tryptophyl 37.7 17 0.00037 15.1 0.6 7 111-117 6-12 (12)
20 cd00413 Glyco_hydrolase_16 gly 36.9 1.2E+02 0.0027 21.5 5.5 37 57-93 148-184 (210)
21 COG0139 HisI Phosphoribosyl-AM 36.8 82 0.0018 21.6 4.2 43 14-70 49-91 (111)
22 PRK14637 hypothetical protein; 35.2 96 0.0021 22.0 4.6 40 51-90 109-149 (151)
23 KOG3953|consensus 33.0 20 0.00043 27.7 0.8 59 10-80 21-79 (242)
24 PF06832 BiPBP_C: Penicillin-B 32.3 1.1E+02 0.0023 19.1 4.1 27 51-77 31-57 (89)
25 PF01502 PRA-CH: Phosphoribosy 32.3 1.4E+02 0.0029 19.0 5.3 41 16-70 19-59 (75)
26 PRK00051 hisI phosphoribosyl-A 31.5 1.4E+02 0.0031 20.8 4.8 43 14-70 45-87 (125)
27 PF12218 End_N_terminal: N ter 31.0 49 0.0011 20.5 2.1 18 68-88 44-61 (67)
28 PF03044 Herpes_UL16: Herpesvi 27.1 1.6E+02 0.0036 23.5 5.1 47 65-115 71-117 (330)
29 PRK02759 bifunctional phosphor 26.8 1.8E+02 0.004 21.9 5.0 44 13-70 46-89 (203)
30 smart00135 LY Low-density lipo 24.8 98 0.0021 15.7 2.5 18 54-71 12-29 (43)
31 PF13385 Laminin_G_3: Concanav 24.7 1.4E+02 0.003 19.2 3.8 23 53-77 89-111 (157)
32 PF11324 DUF3126: Protein of u 24.3 1E+02 0.0022 19.0 2.7 19 51-69 36-55 (63)
33 KOG1538|consensus 23.8 2.2E+02 0.0048 25.9 5.6 24 50-75 192-216 (1081)
34 PRK13680 hypothetical protein; 23.4 67 0.0014 22.2 1.9 15 54-68 101-115 (117)
35 PF13995 YebF: YebF-like prote 22.3 78 0.0017 20.8 2.0 14 55-68 76-89 (89)
36 PLN02346 histidine biosynthesi 22.1 2.5E+02 0.0054 22.2 5.1 44 13-70 84-127 (271)
37 cd02178 GH16_beta_agarase Beta 21.3 2.8E+02 0.006 20.9 5.2 38 55-92 183-227 (258)
38 cd01734 YlxS_C YxlS is a Bacil 20.4 2.1E+02 0.0045 17.8 3.7 31 53-83 42-76 (83)
39 PF02457 DisA_N: DisA bacteria 20.4 1.9E+02 0.004 19.8 3.7 23 51-73 99-121 (122)
No 1
>KOG3953|consensus
Probab=99.96 E-value=4.8e-29 Score=187.50 Aligned_cols=113 Identities=62% Similarity=1.061 Sum_probs=103.7
Q ss_pred CcccCccccccCCCceeeEEcCCceEEcCCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEECCEEeeeeeec
Q psy2942 1 MAVCLVTSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVAFRG 80 (117)
Q Consensus 1 ~~~~~~~~~lG~d~~SWg~~~~~g~~~h~~~~~~~~~y~~~~~~g~~~~~gd~IG~~lD~~~gtLsF~~NG~~lG~AF~~ 80 (117)
|+|.+|.++||+|++||||+..+++.||++.. ...||.+.+ .+.+..+|+|.|+|||++|||+|.+++++||+||++
T Consensus 97 lha~gy~aLlGs~~qswGw~l~~~~l~H~g~~--~~~yp~~~~-~p~~~vp~ri~viLDm~egtl~F~~~~e~LGvAFRg 173 (242)
T KOG3953|consen 97 LHAVGYTALLGSNSQSWGWDLGRNVLYHDGQV--AGLYPALNR-QPKYNVPDRILVILDMIEGTLSFAADGEYLGVAFRG 173 (242)
T ss_pred hhhhHHHHHhCCCCCccceecccceeeecCcc--ccccccccC-CchhcCCceEEEEEeeccceEEEEECCeEEeeeecC
Confidence 46899999999999999999988899999943 347886665 789999999999999999999999999999999999
Q ss_pred cCCCceEEEEEeeeCCcEEEEEEccCCC-CCCCcccc
Q psy2942 81 LKGRKLYPIVSAVWGHCEITMKYIGGLD-LYTSYLTP 116 (117)
Q Consensus 81 l~~~~lyPavs~~~~~~~v~l~~~~~~~-~~~~~~~~ 116 (117)
+++++|||+||.++++|||+|.|.++++ ++|.++++
T Consensus 174 L~~~~LYP~Vsav~g~~Evtm~Ylg~~~~~e~~~~~~ 210 (242)
T KOG3953|consen 174 LKDKKLYPAVSAVWGHCEVTMKYLGTLDVDEPDPLAN 210 (242)
T ss_pred CCCCcceeeeeehhcceeEEEEEeCCcCcCCccccch
Confidence 9999999999999999999999999999 88877764
No 2
>smart00449 SPRY Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.
Probab=99.83 E-value=1.5e-19 Score=122.46 Aligned_cols=89 Identities=35% Similarity=0.656 Sum_probs=73.9
Q ss_pred ccccccCCCceeeEEcCCceEEcCCccCCCcccCCcCCCCCCccC-CCEEEEEEeCCCCEEEEEECCEEe-eeeeeccC-
Q psy2942 6 VTSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVV-PDKFLVILDMDEGTLSFVVDGQYL-GVAFRGLK- 82 (117)
Q Consensus 6 ~~~~lG~d~~SWg~~~~~g~~~h~~~~~~~~~y~~~~~~g~~~~~-gd~IG~~lD~~~gtLsF~~NG~~l-G~AF~~l~- 82 (117)
....+|+++.||+|...++.+||+...+ .| +..++. +|+|||+||+++|+|+|++||+.+ ++||.++.
T Consensus 29 ~~~~~G~~~~sw~~~~~~g~~~~~~~~~---~~------~~~~~~~gd~iGv~lD~~~g~l~F~~ng~~~~~~~f~~~~~ 99 (122)
T smart00449 29 YFALLGEDKGSWGYDGDGGKKYHNSTGP---EY------GLPLQEPGDVIGCFLDLEAGTISFYKNGKYLHGLAFFDVKF 99 (122)
T ss_pred ccccCCCCCCEEEEEcCCCcEEeCCCCC---cc------CccccCCCCEEEEEEECCCCEEEEEECCCEeeeEEEeccCC
Confidence 4568999999999998777899987642 34 567775 999999999999999999999999 89998876
Q ss_pred CCceEEEEEeeeCCcEEEEEEc
Q psy2942 83 GRKLYPIVSAVWGHCEITMKYI 104 (117)
Q Consensus 83 ~~~lyPavs~~~~~~~v~l~~~ 104 (117)
.++|||+|++..+ +.+++|+.
T Consensus 100 ~~~l~P~~~~~~~-~~~~~n~g 120 (122)
T smart00449 100 SGPLYPAVSLGSG-CSVRLNFG 120 (122)
T ss_pred CCcEeeEEEcCCC-CEEEEEec
Confidence 5699999998433 37777764
No 3
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....
Probab=99.82 E-value=4.8e-19 Score=119.57 Aligned_cols=91 Identities=29% Similarity=0.437 Sum_probs=77.2
Q ss_pred CccccccCCCceeeEEcCCceEEcCCccCCCcccCCcCCCCCCccC-CCEEEEEEeCCCCEEEEEECCEEee-eeeeccC
Q psy2942 5 LVTSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVV-PDKFLVILDMDEGTLSFVVDGQYLG-VAFRGLK 82 (117)
Q Consensus 5 ~~~~~lG~d~~SWg~~~~~g~~~h~~~~~~~~~y~~~~~~g~~~~~-gd~IG~~lD~~~gtLsF~~NG~~lG-~AF~~l~ 82 (117)
.....+|.+..||+|++..+..+|+...+ .+ +..++. +|+|||+||+++|+|+|++||+.++ .+|+++.
T Consensus 29 ~~~~~~g~~~~s~~~~~~~~~~~~~~~~~---~~------~~~~~~~~dvIG~~lD~~~g~l~F~~ng~~~~~~~f~~~~ 99 (124)
T PF00622_consen 29 GDENLSGYDPFSWGFHGDGGKKYHGGTSE---ET------GSPFQEPGDVIGCGLDLDNGELSFYKNGKFLGIYAFTDID 99 (124)
T ss_dssp SSTS-TTSSTTEEEEETTTTTEEESTSSS---EC------SCTSSTTTSEEEEEEETTTTEEEEEETTEEEEEEEEESCT
T ss_pred CccccCCccccceeeeccccccceeeccc---cc------ccccccCCcEEEEEEeecccEEEEEECCccceeEEEECCC
Confidence 34668999999999998665899987753 34 567887 9999999999999999999999999 9999887
Q ss_pred C-CceEEEEEeeeCCcEEEEEEcc
Q psy2942 83 G-RKLYPIVSAVWGHCEITMKYIG 105 (117)
Q Consensus 83 ~-~~lyPavs~~~~~~~v~l~~~~ 105 (117)
. ++|||+|++.. ++++++|+..
T Consensus 100 ~~~~l~P~v~~~~-~~~~~~n~g~ 122 (124)
T PF00622_consen 100 FSEPLYPAVSLGG-GQSVELNFGQ 122 (124)
T ss_dssp TSSSBEEEEEEES-TSEEEEEEEC
T ss_pred CCCcEEEEEEecC-CCEEEEEeCC
Confidence 4 69999999865 8999999875
No 4
>KOG0349|consensus
Probab=99.62 E-value=5.9e-16 Score=126.74 Aligned_cols=86 Identities=24% Similarity=0.409 Sum_probs=77.1
Q ss_pred cccCCCceeeEEcCCceEEcCCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEECCEEeeeeee---ccCCCc
Q psy2942 9 LVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVAFR---GLKGRK 85 (117)
Q Consensus 9 ~lG~d~~SWg~~~~~g~~~h~~~~~~~~~y~~~~~~g~~~~~gd~IG~~lD~~~gtLsF~~NG~~lG~AF~---~l~~~~ 85 (117)
-||.+..++||.+ +|++.||.+ +.+| |++|...|+|||+||++.++++|++||+.||+||+ +++.+.
T Consensus 156 dlGt~~~gFGfGG-TGkKS~nkq---FDdY------Ge~Ft~~DvIGCyLDld~~~v~fsKNG~~lg~AF~ip~~~kn~~ 225 (725)
T KOG0349|consen 156 DLGTGLDGFGFGG-TGKKSTNKQ---FDDY------GEPFTLNDVIGCYLDLDSRTVWFSKNGEQLGAAFSIPVKYKNSN 225 (725)
T ss_pred ccCccccccccCc-cCccccccc---cccc------cCcccccceeeEEEeccCceEEEecCccccceeEEcChhhcccc
Confidence 3889999999996 899999886 5679 99999999999999999999999999999999998 455789
Q ss_pred eEEEEEeeeCCcEEEEEEccC
Q psy2942 86 LYPIVSAVWGHCEITMKYIGG 106 (117)
Q Consensus 86 lyPavs~~~~~~~v~l~~~~~ 106 (117)
|||||-+ +|+++++||..-
T Consensus 226 lfPAvvl--kNael~fNFG~~ 244 (725)
T KOG0349|consen 226 LFPAVVL--KNAELSFNFGSQ 244 (725)
T ss_pred cchheee--ccceEEEecCCC
Confidence 9999987 799999998653
No 5
>KOG2626|consensus
Probab=99.40 E-value=4.4e-13 Score=110.79 Aligned_cols=95 Identities=20% Similarity=0.443 Sum_probs=81.3
Q ss_pred ccccccCCCceeeEEcCCceEEcCCccCCCcccCCcCCCCCCccCCCEEEEEEeC-------------------------
Q psy2942 6 VTSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDM------------------------- 60 (117)
Q Consensus 6 ~~~~lG~d~~SWg~~~~~g~~~h~~~~~~~~~y~~~~~~g~~~~~gd~IG~~lD~------------------------- 60 (117)
.|+.||.|..||+|.-.+|.++|-+.. ..| -..|.+||+||+++++
T Consensus 359 LqApvGYdkfsY~wRdk~GtKfh~s~g---k~Y------~~gf~qGDvLGf~I~LP~~~~~~~~lp~~~kdk~lI~yK~~ 429 (544)
T KOG2626|consen 359 LQAPVGYDKFSYGWRDKKGTKFHESLG---KHY------SDGFGQGDVLGFYINLPKDLSPEKYLPLTHKDKFLIKYKGH 429 (544)
T ss_pred cccccccccccccccccCCcchhhhhh---hhh------hhhccCCceEEEEEecCCcccccccCCccccccceeeeeee
Confidence 567899999999999778999998874 468 4799999999999998
Q ss_pred -------------------CCCEEEEEECCEEeeeeeeccC-CCceEEEEEeeeCCcEEEEEEccCCCCC
Q psy2942 61 -------------------DEGTLSFVVDGQYLGVAFRGLK-GRKLYPIVSAVWGHCEITMKYIGGLDLY 110 (117)
Q Consensus 61 -------------------~~gtLsF~~NG~~lG~AF~~l~-~~~lyPavs~~~~~~~v~l~~~~~~~~~ 110 (117)
...+|.|++||..+|+||+||. ...+|||+|+ ++.|.+++||.-...-.
T Consensus 430 lyfe~~d~v~k~~k~l~~~pgS~I~f~KNG~~qG~Ay~ni~~~G~YyPaIS~-yks~tv~~nfGP~F~~~ 498 (544)
T KOG2626|consen 430 LYFEDPDNVAKIEKTLKIKPGSEIEFFKNGVSQGVAYENIYKAGAYYPAISI-YKSCTVKFNFGPQFRYP 498 (544)
T ss_pred eEEEccchhhhhhhccccCCCceEEEeecccchhhhhhhhhccccccceeee-cccceEEEeccccccCC
Confidence 2347999999999999999998 4689999997 67799999998765443
No 6
>KOG4367|consensus
Probab=99.16 E-value=1.5e-10 Score=94.88 Aligned_cols=90 Identities=23% Similarity=0.396 Sum_probs=70.5
Q ss_pred cccccCCCceeeEEc--CCceEEcCCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEECCEEe-eeeeeccCC
Q psy2942 7 TSLVGSNDQSWGWDL--GRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYL-GVAFRGLKG 83 (117)
Q Consensus 7 ~~~lG~d~~SWg~~~--~~g~~~h~~~~~~~~~y~~~~~~g~~~~~gd~IG~~lD~~~gtLsF~~NG~~l-G~AF~~l~~ 83 (117)
+.+||.|.+.|.+.. .+.+..||...++ +. -..+.+|.+|||.||+++|++.|++|.+.- .+||.++++
T Consensus 603 nvmlgkdlhgwsmyvdgerswylhnethhn-rv-------lggvtrgtvigvrldcdrgtmeytvndrqddsmaftnmrg 674 (699)
T KOG4367|consen 603 NVMLGKDLHGWSMYVDGERSWYLHNETHHN-RV-------LGGVTRGTVIGVRLDCDRGTMEYTVNDRQDDSMAFTNMRG 674 (699)
T ss_pred ceeecccccceeEEEcCcceeEEecccccc-cc-------ccccccccEEEEEEeccCCceEEEeccccCCceeeecccc
Confidence 468999999999876 3345778877653 11 247788999999999999999999998754 489999965
Q ss_pred CceEEEEEeeeCCcEEEEEEccCCC
Q psy2942 84 RKLYPIVSAVWGHCEITMKYIGGLD 108 (117)
Q Consensus 84 ~~lyPavs~~~~~~~v~l~~~~~~~ 108 (117)
-+|||||+ +.|.+|++ ..+|.
T Consensus 675 -lyypafsv-nanssitv--htgls 695 (699)
T KOG4367|consen 675 -LYYPAFSV-NANSSITV--HTGLS 695 (699)
T ss_pred -eeeeeeEe-ccCceEEE--ecCCC
Confidence 79999996 67777776 44543
No 7
>KOG4030|consensus
Probab=99.08 E-value=7.1e-10 Score=80.06 Aligned_cols=86 Identities=22% Similarity=0.404 Sum_probs=65.9
Q ss_pred ccccCCCceeeEEcCCceEEcCCccCCCcccCCcCCCCCC-ccCCCEEEEEEeCCCCEEEEEECCEEeeeeeeccCCCce
Q psy2942 8 SLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDET-FVVPDKFLVILDMDEGTLSFVVDGQYLGVAFRGLKGRKL 86 (117)
Q Consensus 8 ~~lG~d~~SWg~~~~~g~~~h~~~~~~~~~y~~~~~~g~~-~~~gd~IG~~lD~~~gtLsF~~NG~~lG~AF~~l~~~~l 86 (117)
.-.|.|.+||++. +++...||++++. +-| ... -++||+|||..| +-+|.||.||+.+...|+++++ ++
T Consensus 92 ~p~g~d~~sw~~r-~dga~~hnnee~~--r~p-----a~~~p~EGDvVGvayD--HVELnfY~NGKn~e~p~~gvRG-~v 160 (197)
T KOG4030|consen 92 VPGGCDEKSWGIR-DDGAIAHNNEEVA--RMP-----ATVFPEEGDVVGVAYD--HVELNFYVNGKNVEDPITGVRG-PV 160 (197)
T ss_pred CCCCCcceeEEEc-cCCchhcccHHHh--cCc-----cccCCccCcEEEEEee--eEEEEEEEcCceeccccccccc-ce
Confidence 3478999999999 6999999987642 111 122 267999999885 6789999999999999999987 99
Q ss_pred EEEEEeeeCCcEEEEEEcc
Q psy2942 87 YPIVSAVWGHCEITMKYIG 105 (117)
Q Consensus 87 yPavs~~~~~~~v~l~~~~ 105 (117)
||.|.. -.....-+.|.+
T Consensus 161 yPvvYV-ddsAILD~~f~n 178 (197)
T KOG4030|consen 161 YPVVYV-DDSAILDLKFKN 178 (197)
T ss_pred eeEEEe-CCceEEEEEecc
Confidence 999985 333444555444
No 8
>KOG2243|consensus
Probab=98.74 E-value=3.1e-08 Score=89.47 Aligned_cols=76 Identities=20% Similarity=0.479 Sum_probs=65.3
Q ss_pred cccccCCCceeeEEcCCceEEcCCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEECCEEe------eeeeec
Q psy2942 7 TSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYL------GVAFRG 80 (117)
Q Consensus 7 ~~~lG~d~~SWg~~~~~g~~~h~~~~~~~~~y~~~~~~g~~~~~gd~IG~~lD~~~gtLsF~~NG~~l------G~AF~~ 80 (117)
...||.|++.+.+++.+++.||.+.. .| |..|+.||+|||++|++..++-|++||+.| ..||.+
T Consensus 1132 d~elgadd~af~fdg~k~qrwhqg~~----~~------grswq~gdvvgcmi~l~d~sm~ftlngeili~~~gselaf~d 1201 (5019)
T KOG2243|consen 1132 DQELGADDQAFAFDGFKAQRWHQGNE----HF------GRSWQAGDVVGCMIDLDDASMIFTLNGEILIDDKGSELAFAD 1201 (5019)
T ss_pred chhhCCccceeeeccchhhhhhcccc----cc------ccccCCCCeEEEEEecccceEEEEEcCeEEEcCCCCeeeecc
Confidence 34689999999999988999999875 36 899999999999999999999999999976 478886
Q ss_pred cC-CCceEEEEEe
Q psy2942 81 LK-GRKLYPIVSA 92 (117)
Q Consensus 81 l~-~~~lyPavs~ 92 (117)
.. +..+-|..|+
T Consensus 1202 ~di~~gfipic~l 1214 (5019)
T KOG2243|consen 1202 FDIEDGFIPICCL 1214 (5019)
T ss_pred ccccCCceeeeeh
Confidence 64 4568887775
No 9
>KOG1477|consensus
Probab=97.76 E-value=2e-05 Score=65.55 Aligned_cols=88 Identities=16% Similarity=0.159 Sum_probs=71.5
Q ss_pred cccCCCceeeEEcCCceEEcCCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEECCEEeeeeeeccCCCceEE
Q psy2942 9 LVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVAFRGLKGRKLYP 88 (117)
Q Consensus 9 ~lG~d~~SWg~~~~~g~~~h~~~~~~~~~y~~~~~~g~~~~~gd~IG~~lD~~~gtLsF~~NG~~lG~AF~~l~~~~lyP 88 (117)
..|+-..||+|.++.|.+.|.... .+..| ++.+..+|.|||..+....+|.|++||..+|.+++.+.. .++|
T Consensus 110 ~~g~~~~s~~y~g~~g~l~~~~~~-~~~~~------~~~~~~~D~ig~~~~~~~q~i~~t~~g~~~~~~~~~~~~-~~~~ 181 (469)
T KOG1477|consen 110 SEGYTMNSLGYHGNSGLLDNGGAE-LGEEF------GPTFTTGDEIGCGINEITQEIFFTKNGTEVGEIIKPLSP-DLLE 181 (469)
T ss_pred ccchhhhhhcccCCchhhhhhhhh-hchhh------cCCCCccceeeeccchhhheeeeccCccccccccccccc-cccc
Confidence 467777799999988888873332 24566 789999999999999999999999999999999998875 4666
Q ss_pred E----EEeeeCCcEEEEEEc
Q psy2942 89 I----VSAVWGHCEITMKYI 104 (117)
Q Consensus 89 a----vs~~~~~~~v~l~~~ 104 (117)
. +.+...+..|++++.
T Consensus 182 ~~~n~~~~~s~~~~I~~~~g 201 (469)
T KOG1477|consen 182 ENGNLAWLFSPNEEVEVNFG 201 (469)
T ss_pred cccceeeEeccCceeeeeec
Confidence 5 666677888888877
No 10
>KOG1477|consensus
Probab=97.31 E-value=0.00012 Score=61.05 Aligned_cols=75 Identities=20% Similarity=0.280 Sum_probs=56.5
Q ss_pred EEcCCceEEcCCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEECCEEeeeeeeccCCCceEEEEEeeeCCcE
Q psy2942 19 WDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCE 98 (117)
Q Consensus 19 ~~~~~g~~~h~~~~~~~~~y~~~~~~g~~~~~gd~IG~~lD~~~gtLsF~~NG~~lG~AF~~l~~~~lyPavs~~~~~~~ 98 (117)
+++.++.++-.... ++.| |+.+..||+|+|.+|...++-+|++||..+|+||-.... -+||-|.++..+..
T Consensus 3 ~~~~~~~~~~~~~~--~~~~------g~~~~~~d~i~~~~~~~~~~~~~~~~~~~~gi~f~~~~~-~~~~dvg~~~~~~~ 73 (469)
T KOG1477|consen 3 YHGDDGNFFLKSGD--GQLY------GPVFTTGDVIPCEVNTINGSDFFTKNGPDMGIAFYTPPA-LLYHDVGVVQAGEP 73 (469)
T ss_pred Ccccchhhhhhccc--cccc------CCcCCccccccceEeccCCceeEEEEcCCcceeeecCcc-ccCCCcceeeCCCC
Confidence 34444444443332 4466 899999999999999999999999999999999975543 27888888777666
Q ss_pred EEEE
Q psy2942 99 ITMK 102 (117)
Q Consensus 99 v~l~ 102 (117)
+..|
T Consensus 74 ~~~N 77 (469)
T KOG1477|consen 74 LPAN 77 (469)
T ss_pred CCcc
Confidence 6555
No 11
>KOG2243|consensus
Probab=96.34 E-value=0.0025 Score=59.17 Aligned_cols=90 Identities=20% Similarity=0.296 Sum_probs=63.0
Q ss_pred cccCCCceeeEEcCCceEEcCCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEECCEEeeeeeeccC-CCceE
Q psy2942 9 LVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVAFRGLK-GRKLY 87 (117)
Q Consensus 9 ~lG~d~~SWg~~~~~g~~~h~~~~~~~~~y~~~~~~g~~~~~gd~IG~~lD~~~gtLsF~~NG~~lG~AF~~l~-~~~ly 87 (117)
.+|.|-.|||+++ -..|.+...+...+ | + ....+..|+|.|+||+..-.|+|-+||+..---|++.. +.-+|
T Consensus 723 gvgddl~sygfdg--lhlwsg~i~r~vas-~--n--qhllrsddvisccldl~~psisfringqpvqgmfenfn~dglff 795 (5019)
T KOG2243|consen 723 GVGDDLFSYGFDG--LHLWSGCIARAVAS-P--N--QHLLRSDDVISCCLDLGAPSISFRINGQPVQGMFENFNIDGLFF 795 (5019)
T ss_pred CccchhhhcCCCc--chhhcccchhhhcC-h--h--hhhhcccchhhhhhhcCCCceEEEECCccchhHHhcCCCcceee
Confidence 4677888999886 34565544321000 1 0 23556779999999999999999999999766798876 45788
Q ss_pred EEEEeeeCCcEEEEEEccC
Q psy2942 88 PIVSAVWGHCEITMKYIGG 106 (117)
Q Consensus 88 Pavs~~~~~~~v~l~~~~~ 106 (117)
|.+|. ..+.+|++-..|+
T Consensus 796 pv~sf-sagikvrfllggr 813 (5019)
T KOG2243|consen 796 PVMSF-SAGIKVRFLLGGR 813 (5019)
T ss_pred eeEee-ccCeEEEEEeccc
Confidence 99996 4566666654444
No 12
>KOG2242|consensus
Probab=94.14 E-value=0.0077 Score=51.33 Aligned_cols=88 Identities=27% Similarity=0.434 Sum_probs=64.1
Q ss_pred ccccCCCceeeEEcCCceEEcCCccCCCcccCCcCCCCCCccCCCEEEEEEeCC---CCEEEEEECCEEeeeeee----c
Q psy2942 8 SLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMD---EGTLSFVVDGQYLGVAFR----G 80 (117)
Q Consensus 8 ~~lG~d~~SWg~~~~~g~~~h~~~~~~~~~y~~~~~~g~~~~~gd~IG~~lD~~---~gtLsF~~NG~~lG~AF~----~ 80 (117)
+.++.+..++++...+.+-|.... +.| ++.+.+.|.|||++|.. .-.|+|.+|++.++.+|. .
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~------~e~f~e~~~i~c~~~~~~~d~~~l~~~k~~~~~~~~~~l~~~~ 188 (558)
T KOG2242|consen 119 TLLGDEPFSYGYSETGKKSCNSEV----EKY------GEKFPENDVIGCFADFEILDEVELSYEKNGQDLGESFLLSKED 188 (558)
T ss_pred hccccccccccccccccchhhHHH----HHH------HhhcccccccchhhcccccccCcchhhhccchhhhhhcchhhh
Confidence 456677777777764444443322 356 78999999999988875 577999999999999995 2
Q ss_pred cCCCceEEEEEeeeCCcEEEEEEccCC
Q psy2942 81 LKGRKLYPIVSAVWGHCEITMKYIGGL 107 (117)
Q Consensus 81 l~~~~lyPavs~~~~~~~v~l~~~~~~ 107 (117)
+.++.+||++.. ++|.|.++|....
T Consensus 189 ~~~~~~~p~vl~--~~~~ve~~f~~~~ 213 (558)
T KOG2242|consen 189 LGGQALYPHVLR--KNCAVEGNFGQKA 213 (558)
T ss_pred ccCcccCccccc--Ccceecccccccc
Confidence 235679999885 6777777776653
No 13
>KOG2242|consensus
Probab=80.74 E-value=1.2 Score=38.24 Aligned_cols=68 Identities=12% Similarity=-0.006 Sum_probs=53.9
Q ss_pred CceeeEEcCCceEEcCCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEECCEEeeeeeeccC----CCceEEE
Q psy2942 14 DQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVAFRGLK----GRKLYPI 89 (117)
Q Consensus 14 ~~SWg~~~~~g~~~h~~~~~~~~~y~~~~~~g~~~~~gd~IG~~lD~~~gtLsF~~NG~~lG~AF~~l~----~~~lyPa 89 (117)
..++.++.....+||.... .| +..+.. |+|+|.+|++.-.+ ++.++...+.||.... ...-+||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~------~~~~~~-~~~~~~d~~~c~~~-~~~~~~~~~~~~~~e~~~~~~~~~r~a 75 (558)
T KOG2242|consen 8 GFSYFEDGEDRRAWSPQPP----AE------EDEWHF-DTIVCIDTYNCDLH-KYRRDRSSGYALTKERFAGPWDGARAA 75 (558)
T ss_pred ccccccccchhhhccCCCC----cc------cccccc-ceeeechhhhhhhh-hcccccccccccchhhccccCccccee
Confidence 6677788767778888765 34 678888 99999999998888 9999999999997443 4567788
Q ss_pred EEee
Q psy2942 90 VSAV 93 (117)
Q Consensus 90 vs~~ 93 (117)
+++.
T Consensus 76 ~~~~ 79 (558)
T KOG2242|consen 76 YSVS 79 (558)
T ss_pred eeec
Confidence 8863
No 14
>PF15409 PH_8: Pleckstrin homology domain
Probab=71.92 E-value=4.5 Score=26.54 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=16.6
Q ss_pred EEEEEEeCCCCEEEEEECCEE
Q psy2942 53 KFLVILDMDEGTLSFVVDGQY 73 (117)
Q Consensus 53 ~IG~~lD~~~gtLsF~~NG~~ 73 (117)
+-=..||++.|+|+||+|-..
T Consensus 16 kRyFvL~~~~G~LsYy~~~~~ 36 (89)
T PF15409_consen 16 KRYFVLDFEKGTLSYYRNQNS 36 (89)
T ss_pred eEEEEEEcCCcEEEEEecCCC
Confidence 345679999999999997543
No 15
>PF14041 Lipoprotein_21: LppP/LprE lipoprotein
Probab=64.77 E-value=34 Score=21.89 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=28.9
Q ss_pred CEEEEEECCEEeeeeeeccCCCceEEEEEeeeCCcEEEEEEccCCCCC
Q psy2942 63 GTLSFVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGGLDLY 110 (117)
Q Consensus 63 gtLsF~~NG~~lG~AF~~l~~~~lyPavs~~~~~~~v~l~~~~~~~~~ 110 (117)
.++.|+.+|+++|++-..-. ..-+.+ .....+|+++|.--...+
T Consensus 26 ~~vl~Fh~G~fiGt~t~~p~--~~~~v~--~~~~~~V~V~Y~~~~~~d 69 (89)
T PF14041_consen 26 QQVLFFHDGEFIGTATPDPY--GYIDVI--RSTDDTVTVQYRWYKPDD 69 (89)
T ss_pred eEEEEEECCEEcccCCcccc--CceeEE--eeCCCEEEEEEEeCCCCC
Confidence 46889999999998874222 233444 346788888887444333
No 16
>PF08893 DUF1839: Domain of unknown function (DUF1839); InterPro: IPR014989 This group of proteins are functionally uncharacterised.
Probab=49.66 E-value=23 Score=28.54 Aligned_cols=42 Identities=26% Similarity=0.483 Sum_probs=30.6
Q ss_pred CEEEE-EEeCCCCEEEEEECCEE---eeeeeeccC---------CCceEEEEEee
Q psy2942 52 DKFLV-ILDMDEGTLSFVVDGQY---LGVAFRGLK---------GRKLYPIVSAV 93 (117)
Q Consensus 52 d~IG~-~lD~~~gtLsF~~NG~~---lG~AF~~l~---------~~~lyPavs~~ 93 (117)
.+||+ .||.++++|.|+.|.-+ -|--|.+|. +.+|+|-+-.+
T Consensus 123 TTI~id~iD~~ar~l~YfHn~Gy~~l~GeDy~glf~~~~~~~~~~~~l~PYvE~v 177 (319)
T PF08893_consen 123 TTIGIDRIDPEARRLGYFHNSGYHRLEGEDYDGLFRLDPPLSEWGAPLFPYVEFV 177 (319)
T ss_pred ceeeeeeeecccceEeeecCCceeecccCCcccccccCcccccCCCCCCCceeEe
Confidence 67888 89999999999999544 255565553 23688888753
No 17
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=46.55 E-value=40 Score=22.70 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.1
Q ss_pred CEEEEEEeCCCCEEEEEECCEEeee
Q psy2942 52 DKFLVILDMDEGTLSFVVDGQYLGV 76 (117)
Q Consensus 52 d~IG~~lD~~~gtLsF~~NG~~lG~ 76 (117)
..|.+.+|-..|+|..|+||+..+.
T Consensus 64 ~hva~v~d~~~g~~~lYvnG~~~~~ 88 (133)
T smart00560 64 VHLAGVYDGGAGKLSLYVNGVEVAT 88 (133)
T ss_pred EEEEEEEECCCCeEEEEECCEEccc
Confidence 4678889988899999999987653
No 18
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=38.47 E-value=1e+02 Score=22.44 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=27.3
Q ss_pred EEEeCCCCEEEEEECCEEeeeeee---ccCCCceEEEEEeeeC
Q psy2942 56 VILDMDEGTLSFVVDGQYLGVAFR---GLKGRKLYPIVSAVWG 95 (117)
Q Consensus 56 ~~lD~~~gtLsF~~NG~~lG~AF~---~l~~~~lyPavs~~~~ 95 (117)
-.||.....|.||+||+.+...-. .++..|.+-.+.+..+
T Consensus 143 Y~v~W~~~~i~~yvDg~~v~~~~~~~~~~p~~p~~i~~n~w~~ 185 (212)
T cd02175 143 YAFEWEPDSIRWYVDGELVHEATATDPNIPDTPGKIMMNLWPG 185 (212)
T ss_pred EEEEEeCCEEEEEECCEEEEEEcCccCCCCCCCcEEEEEEEcC
Confidence 457778999999999997654433 4555677766665433
No 19
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=37.74 E-value=17 Score=15.11 Aligned_cols=7 Identities=29% Similarity=0.444 Sum_probs=3.4
Q ss_pred CCccccC
Q psy2942 111 TSYLTPV 117 (117)
Q Consensus 111 ~~~~~~~ 117 (117)
|++|+||
T Consensus 6 ~ppiyp~ 12 (12)
T PF08248_consen 6 PPPIYPV 12 (12)
T ss_pred CCCcccC
Confidence 3455554
No 20
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=36.86 E-value=1.2e+02 Score=21.49 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=25.9
Q ss_pred EEeCCCCEEEEEECCEEeeeeeeccCCCceEEEEEee
Q psy2942 57 ILDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIVSAV 93 (117)
Q Consensus 57 ~lD~~~gtLsF~~NG~~lG~AF~~l~~~~lyPavs~~ 93 (117)
.++...+.|.|++||+.....=..++..|.+..+.+.
T Consensus 148 ~~~W~~~~i~~yvDG~~~~~~~~~~p~~p~~i~ln~~ 184 (210)
T cd00413 148 RVDWTPGEITFYVDGVLVATITNQVPDDPMNIILNLW 184 (210)
T ss_pred EEEEeCCEEEEEECCEEEEEECCCCCCCCcEEEEEEE
Confidence 3455669999999999865433335667778777754
No 21
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=36.81 E-value=82 Score=21.58 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=32.5
Q ss_pred CceeeEEcCCceEEcCCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEEC
Q psy2942 14 DQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVD 70 (117)
Q Consensus 14 ~~SWg~~~~~g~~~h~~~~~~~~~y~~~~~~g~~~~~gd~IG~~lD~~~gtLsF~~N 70 (117)
...|=|+.++.+.|+.++.. | .++ .++.+.+|+|.-+|-|.++
T Consensus 49 g~~~y~SRSR~~lW~KGetS-----------G-~~q--~v~~i~~DCD~Dall~~V~ 91 (111)
T COG0139 49 GEAHYYSRSRQELWTKGETS-----------G-HTQ--KVVEIRLDCDGDALLLLVE 91 (111)
T ss_pred CeEEEEEcchhhhecccccc-----------C-ceE--EEEEEEcCCCCCEEEEEEE
Confidence 34677887788899988742 2 223 5899999999999988875
No 22
>PRK14637 hypothetical protein; Provisional
Probab=35.17 E-value=96 Score=22.04 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=32.2
Q ss_pred CCE-EEEEEeCCCCEEEEEECCEEeeeeeeccCCCceEEEE
Q psy2942 51 PDK-FLVILDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIV 90 (117)
Q Consensus 51 gd~-IG~~lD~~~gtLsF~~NG~~lG~AF~~l~~~~lyPav 90 (117)
+.. .|.+++.++..+.+...|+..-+.|.++..-.|.|.+
T Consensus 109 ~~~~~G~L~~~~d~~v~l~~~~~~~~i~~~~I~ka~L~~~~ 149 (151)
T PRK14637 109 GQWQVGTIAEADETCLVLTSDGVPVTIPYVQITKAQLHPAV 149 (151)
T ss_pred CcEEEEEEEEEeCCEEEEEECCEEEEEEHHHeeeEEEEEEE
Confidence 345 5999999999999988888888888888766676665
No 23
>KOG3953|consensus
Probab=33.04 E-value=20 Score=27.74 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=40.4
Q ss_pred ccCCCceeeEEcCCceEEcCCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEECCEEeeeeeec
Q psy2942 10 VGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVAFRG 80 (117)
Q Consensus 10 lG~d~~SWg~~~~~g~~~h~~~~~~~~~y~~~~~~g~~~~~gd~IG~~lD~~~gtLsF~~NG~~lG~AF~~ 80 (117)
+|-..+ |+|+- .....|.....+ + +..|...-+++. .|-.+|++.|+++....+++..+
T Consensus 21 ~~~~~~-~~w~~-~drs~nv~vk~~---~------~~tfhrhpvaqs-td~~rGk~g~~~g~h~w~i~w~~ 79 (242)
T KOG3953|consen 21 LGVQAQ-HGWSP-SDRSLNVFVKLP---D------GLTFHRHPVAQS-TDGIRGKRGYSRGRHAWEIAWPN 79 (242)
T ss_pred hhhHHh-hccCc-ccccceeEEecC---C------cceEEecCCccc-cccccceeeeccCceEEEEEecC
Confidence 555666 77775 333344333221 2 356777778888 99999999999999988777754
No 24
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=32.33 E-value=1.1e+02 Score=19.14 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=19.6
Q ss_pred CCEEEEEEeCCCCEEEEEECCEEeeee
Q psy2942 51 PDKFLVILDMDEGTLSFVVDGQYLGVA 77 (117)
Q Consensus 51 gd~IG~~lD~~~gtLsF~~NG~~lG~A 77 (117)
...|-+-..-..+++++++||+++|.+
T Consensus 31 ~~~l~l~a~~~~~~~~W~vdg~~~g~~ 57 (89)
T PF06832_consen 31 RQPLVLKAAGGRGPVYWFVDGEPLGTT 57 (89)
T ss_pred cceEEEEEeCCCCcEEEEECCEEcccC
Confidence 455555555556699999999999644
No 25
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=32.27 E-value=1.4e+02 Score=19.01 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=28.7
Q ss_pred eeeEEcCCceEEcCCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEEC
Q psy2942 16 SWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVD 70 (117)
Q Consensus 16 SWg~~~~~g~~~h~~~~~~~~~y~~~~~~g~~~~~gd~IG~~lD~~~gtLsF~~N 70 (117)
-+=|+.+++++|+-++.. | .++ .++.+.+|+|.-.|-|.+.
T Consensus 19 ~~y~SRSR~~lW~KGetS-----------G-~~q--~v~~i~~DCD~D~ll~~V~ 59 (75)
T PF01502_consen 19 ATYYSRSRNRLWRKGETS-----------G-NTQ--KVVEIRLDCDGDALLFKVE 59 (75)
T ss_dssp -EEEETTTTEEEETTTTT-----------S---E--EEEEEEE-TTSSEEEEEEE
T ss_pred EEEEEccCCcEeeEECCC-----------C-CEE--EEEEEEecCCCCeEEEEEE
Confidence 456777788999988742 2 222 5889999999999988763
No 26
>PRK00051 hisI phosphoribosyl-AMP cyclohydrolase; Reviewed
Probab=31.46 E-value=1.4e+02 Score=20.79 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=31.4
Q ss_pred CceeeEEcCCceEEcCCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEEC
Q psy2942 14 DQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVD 70 (117)
Q Consensus 14 ~~SWg~~~~~g~~~h~~~~~~~~~y~~~~~~g~~~~~gd~IG~~lD~~~gtLsF~~N 70 (117)
...|=|+.++.++|+.++.. | .++ .++.+.+|++.-.|-|.++
T Consensus 45 g~~~y~SRSR~~lW~KGetS-----------G-~~q--~v~~i~~DCD~D~Ll~~V~ 87 (125)
T PRK00051 45 GRAHYWSRSRQKLWRKGETS-----------G-HVQ--KVHEVRLDCDGDAVLLKVE 87 (125)
T ss_pred CcEEEEeCccCcccCCCCCc-----------C-CeE--EEEEEEecCCCCEEEEEEE
Confidence 44566777777889877642 2 122 4789999999999999875
No 27
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=31.01 E-value=49 Score=20.51 Aligned_cols=18 Identities=17% Similarity=0.569 Sum_probs=9.6
Q ss_pred EECCEEeeeeeeccCCCceEE
Q psy2942 68 VVDGQYLGVAFRGLKGRKLYP 88 (117)
Q Consensus 68 ~~NG~~lG~AF~~l~~~~lyP 88 (117)
++|+++ -|+.|+++|||=
T Consensus 44 f~N~rF---~~eri~gqpl~y 61 (67)
T PF12218_consen 44 FKNARF---VYERIPGQPLYY 61 (67)
T ss_dssp EES-EE---EE-SSTT--EEE
T ss_pred hccceE---EEeecCCCceEe
Confidence 556665 367888999884
No 28
>PF03044 Herpes_UL16: Herpesvirus UL16/UL94 family; InterPro: IPR004286 UL16 protein may play a role in capsid maturation including DNA packaging/cleavage []. In immunofluorescence studies [], UL16 was localised to the nucleus of infected cells in areas containing high concentrations of Human herpesvirus 2 (Herpes simplex virus 2) capsid proteins. These nuclear compartments have been described previously as viral assemblons [] and are distinct from compartments containing replicating DNA. Localization within assemblons argues for a role of UL16 encoded protein in capsid assembly or maturation [].
Probab=27.15 E-value=1.6e+02 Score=23.54 Aligned_cols=47 Identities=21% Similarity=0.226 Sum_probs=28.0
Q ss_pred EEEEECCEEeeeeeeccCCCceEEEEEeeeCCcEEEEEEccCCCCCCCccc
Q psy2942 65 LSFVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGGLDLYTSYLT 115 (117)
Q Consensus 65 LsF~~NG~~lG~AF~~l~~~~lyPavs~~~~~~~v~l~~~~~~~~~~~~~~ 115 (117)
+.|+.||+.++...-.++.. .-+ .+.+...+.+.|++.+.+.+++..
T Consensus 71 v~~~vNg~~~~~~~~~~~~v-~~~---~v~~~~~~~li~fg~~~~~~~~~~ 117 (330)
T PF03044_consen 71 VTFYVNGEHAYCDCCRLRRV-FIK---PVPGGSEYYLIYFGPLSPAPLPFI 117 (330)
T ss_pred EEEEECCEEeeceeeeeeEE-eee---cCCCCceEEEEEecCccCCCCCCC
Confidence 88899999874333222210 001 123446778889998877776654
No 29
>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed
Probab=26.80 E-value=1.8e+02 Score=21.90 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=32.7
Q ss_pred CCceeeEEcCCceEEcCCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEEC
Q psy2942 13 NDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVD 70 (117)
Q Consensus 13 d~~SWg~~~~~g~~~h~~~~~~~~~y~~~~~~g~~~~~gd~IG~~lD~~~gtLsF~~N 70 (117)
....|=|+.++.+.||.+... | .++ .++.+.+|++.-+|=|.++
T Consensus 46 tg~~~~~SRSr~~lW~KGetS-----------G-~~q--~v~~i~~DCD~D~ll~~V~ 89 (203)
T PRK02759 46 TGEVTFFSRSKQRLWTKGETS-----------G-NTQ--KVVSIRLDCDNDTLLVLVE 89 (203)
T ss_pred cCcEEEEeCCCCcccCCCCCC-----------C-CeE--EEEEEEecCCCCeEEEEEE
Confidence 345677887778899987642 2 222 4789999999999988875
No 30
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=24.77 E-value=98 Score=15.67 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=14.6
Q ss_pred EEEEEeCCCCEEEEEECC
Q psy2942 54 FLVILDMDEGTLSFVVDG 71 (117)
Q Consensus 54 IG~~lD~~~gtLsF~~NG 71 (117)
-|+.+|..++.|.|+--.
T Consensus 12 ~~la~d~~~~~lYw~D~~ 29 (43)
T smart00135 12 NGLAVDWIEGRLYWTDWG 29 (43)
T ss_pred CEEEEeecCCEEEEEeCC
Confidence 478999999999888543
No 31
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=24.65 E-value=1.4e+02 Score=19.16 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=18.0
Q ss_pred EEEEEEeCCCCEEEEEECCEEeeee
Q psy2942 53 KFLVILDMDEGTLSFVVDGQYLGVA 77 (117)
Q Consensus 53 ~IG~~lD~~~gtLsF~~NG~~lG~A 77 (117)
.|.+.+| .+++.+|+||+..+..
T Consensus 89 ~l~~~~~--~~~~~lyvnG~~~~~~ 111 (157)
T PF13385_consen 89 HLALTYD--GSTVTLYVNGELVGSS 111 (157)
T ss_dssp EEEEEEE--TTEEEEEETTEEETTC
T ss_pred EEEEEEE--CCeEEEEECCEEEEeE
Confidence 5666776 7889999999986544
No 32
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=24.32 E-value=1e+02 Score=18.98 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=10.8
Q ss_pred CCEEEE-EEeCCCCEEEEEE
Q psy2942 51 PDKFLV-ILDMDEGTLSFVV 69 (117)
Q Consensus 51 gd~IG~-~lD~~~gtLsF~~ 69 (117)
+..||+ +.|-++|.+||..
T Consensus 36 ~EfiGvi~~DedeGe~Sy~f 55 (63)
T PF11324_consen 36 DEFIGVIYRDEDEGEVSYNF 55 (63)
T ss_pred CEEEEEEEeecCCCcEEEEE
Confidence 345555 4555666666654
No 33
>KOG1538|consensus
Probab=23.75 E-value=2.2e+02 Score=25.89 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=17.9
Q ss_pred CCCEEEEEEeCCCCEEEEE-ECCEEee
Q psy2942 50 VPDKFLVILDMDEGTLSFV-VDGQYLG 75 (117)
Q Consensus 50 ~gd~IG~~lD~~~gtLsF~-~NG~~lG 75 (117)
..|+++|. | +..||||| +.|+++|
T Consensus 192 ~~di~aV~-D-W~qTLSFy~LsG~~Ig 216 (1081)
T KOG1538|consen 192 RNDILAVA-D-WGQTLSFYQLSGKQIG 216 (1081)
T ss_pred ccceEEEE-e-ccceeEEEEecceeec
Confidence 34777764 5 67889998 7888877
No 34
>PRK13680 hypothetical protein; Provisional
Probab=23.37 E-value=67 Score=22.21 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=13.1
Q ss_pred EEEEEeCCCCEEEEE
Q psy2942 54 FLVILDMDEGTLSFV 68 (117)
Q Consensus 54 IG~~lD~~~gtLsF~ 68 (117)
--|.+|+.+|+|+|.
T Consensus 101 Y~V~vdC~~gti~Ys 115 (117)
T PRK13680 101 YQVVVDCKAGTAEYQ 115 (117)
T ss_pred EEEEEEccCCeEEec
Confidence 368999999999986
No 35
>PF13995 YebF: YebF-like protein; PDB: 2LQV_A 2XGL_A 4AEQ_A.
Probab=22.26 E-value=78 Score=20.80 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=12.1
Q ss_pred EEEEeCCCCEEEEE
Q psy2942 55 LVILDMDEGTLSFV 68 (117)
Q Consensus 55 G~~lD~~~gtLsF~ 68 (117)
-+.+|+.+|+|+|.
T Consensus 76 ~v~vdC~~gti~Ys 89 (89)
T PF13995_consen 76 QVMVDCKNGTIEYS 89 (89)
T ss_dssp EEEEETTTTEEEEC
T ss_pred EEEEEccCCeEEeC
Confidence 67899999999884
No 36
>PLN02346 histidine biosynthesis bifunctional protein hisIE
Probab=22.14 E-value=2.5e+02 Score=22.20 Aligned_cols=44 Identities=14% Similarity=0.318 Sum_probs=32.5
Q ss_pred CCceeeEEcCCceEEcCCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEEC
Q psy2942 13 NDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVD 70 (117)
Q Consensus 13 d~~SWg~~~~~g~~~h~~~~~~~~~y~~~~~~g~~~~~gd~IG~~lD~~~gtLsF~~N 70 (117)
...-|-|+.++.++||.+... | .++ .++.+.+|+|.-+|-|.+.
T Consensus 84 tg~~~y~SRSR~~LW~KGetS-----------G-~~q--~v~~i~~DCD~D~ll~~V~ 127 (271)
T PLN02346 84 SRKATFYSRSRSGLWTKGETS-----------G-NFI--NVHDIYLDCDRDSIIYLGT 127 (271)
T ss_pred cCcEEEEeCCCCccccCCCCc-----------C-CeE--EEEEEEecCCCCeEEEEEE
Confidence 345677887778899988642 2 122 4789999999999988875
No 37
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=21.26 E-value=2.8e+02 Score=20.91 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=25.1
Q ss_pred EEEEeCC-CCEEEEEECCEEeeeeee------ccCCCceEEEEEe
Q psy2942 55 LVILDMD-EGTLSFVVDGQYLGVAFR------GLKGRKLYPIVSA 92 (117)
Q Consensus 55 G~~lD~~-~gtLsF~~NG~~lG~AF~------~l~~~~lyPavs~ 92 (117)
--.|+.. ...|.||++|+.+...=. ....+|+|-.+.+
T Consensus 183 tY~veW~~p~~i~fyvDG~~~~~~~~~~~~~~~~f~~p~~liln~ 227 (258)
T cd02178 183 VYGVYWKDPDTIRFYIDGVLVRTVENSEITDGTGFDQPMYIIIDT 227 (258)
T ss_pred EEEEEEcCCCeEEEEECCEEEEEEcCcccCcCCcCCCCeEEEEEe
Confidence 3456667 889999999997653321 1224677777665
No 38
>cd01734 YlxS_C YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.
Probab=20.42 E-value=2.1e+02 Score=17.82 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=23.3
Q ss_pred EEEEEEeCCCCEEEEEEC----CEEeeeeeeccCC
Q psy2942 53 KFLVILDMDEGTLSFVVD----GQYLGVAFRGLKG 83 (117)
Q Consensus 53 ~IG~~lD~~~gtLsF~~N----G~~lG~AF~~l~~ 83 (117)
..|.+.+.+...+.+... ++.+-+.|.+|..
T Consensus 42 ~~G~L~~~~~~~v~l~~~~~~~~~~~~i~~~~I~k 76 (83)
T cd01734 42 FEGTLLGVDDDTVTLEVDIKTRGKTVEIPLDKIAK 76 (83)
T ss_pred EEEEEEeEeCCEEEEEEecCCCCeEEEEEhHHeeE
Confidence 478888888888888765 6677777777754
No 39
>PF02457 DisA_N: DisA bacterial checkpoint controller nucleotide-binding; InterPro: IPR003390 The DisA protein is a bacterial checkpoint protein that dimerises into an octameric complex. The protein consists of three distinct domains. This domain is the first and is a globular, nucleotide-binding region; the next 146-289 residues constitute the DisA-linker family, IPR018906 from INTERPRO that consists of an elongated bundle of three alpha helices (alpha-6, alpha-10, and alpha-11), one side of which carries an additional three helices (alpha7-9), which thus forms a spine like-linker between domains 1 and 3. The C-terminal residues, of domain 3, are represented by family HHH, IPR000445 from INTERPRO the specific DNA-binding domain. The octameric complex thus has structurally linked nucleotide-binding and DNA-binding HhH domains and the nucleotide-binding domains are bound to a cyclic di-adenosine phosphate such that DisA is a specific di-adenylate cyclase. The di-adenylate cyclase activity is strongly suppressed by binding to branched DNA, but not to duplex or single-stranded DNA, suggesting a role for DisA as a monitor of the presence of stalled replication forks or recombination intermediates via DNA structure-modulated c-di-AMP synthesis.; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 2FB5_A.
Probab=20.39 E-value=1.9e+02 Score=19.77 Aligned_cols=23 Identities=22% Similarity=0.575 Sum_probs=17.6
Q ss_pred CCEEEEEEeCCCCEEEEEECCEE
Q psy2942 51 PDKFLVILDMDEGTLSFVVDGQY 73 (117)
Q Consensus 51 gd~IG~~lD~~~gtLsF~~NG~~ 73 (117)
.|.|-+.+--+.|+++++.+|+.
T Consensus 99 tdaivivVSEe~G~Is~~~~G~~ 121 (122)
T PF02457_consen 99 TDAIVIVVSEETGTISLAYGGKL 121 (122)
T ss_dssp CSSEEEEE-TTTS-EEEEETTEE
T ss_pred cCCEEEEEEccCCcEEEEECCEE
Confidence 37788888877899999999975
Done!