RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2942
(117 letters)
>gnl|CDD|240486 cd12906, SPRY_SOCS1-2-4, SPRY domain in the suppressor of cytokine
signaling 1, 2, 4 families (SOCS1, SOCS2, SOCS4). The
SPRY domain-containing SOCS box protein family (SPSB1-4,
also known as SSB-1 to -4) is composed of a central SPRY
protein interaction domain and a C-terminal SOCS box.
All four SPSB proteins interact with c-Met, the
hepatocyte growth factor receptor, but only SPSB1,
SPSB2, and SPSB4 interact with prostate apoptosis
response protein 4 (Par-4). They are negative regulators
that recruit the ECS E3 ubiquitin ligase complex to
polyubiquitinate inducible nitric-oxide synthase (iNOS),
resulting in its proteasomal degradation, thus
contributing to protection against the cytotoxic effect
of iNOS in activated macrophages. It has been shown that
SPSB1 and SPSB4 induce the degradation of iNOS more
strongly than SPSB2. The Drosophila melanogaster SPSB1
homolog, GUSTAVUS, interacts with the DEAD box RNA
helicase Vasa. Suppressor of cytokine signaling (SOCS)
proteins negatively regulate signaling from
JAK-associated cytokine receptor complexes, and play key
roles in the regulation of immune homeostasis.
Length = 174
Score = 212 bits (542), Expect = 3e-72
Identities = 85/98 (86%), Positives = 92/98 (93%)
Query: 7 TSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLS 66
SLVGSN++SWGWDLGRN+LYHDSKNN G+TYP LKPDE FVVPDKFLV+LDMDEGTLS
Sbjct: 77 QSLVGSNEESWGWDLGRNKLYHDSKNNPGVTYPAFLKPDENFVVPDKFLVVLDMDEGTLS 136
Query: 67 FVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYI 104
FVVDGQYLGVAFRGLKG+ LYPIVSAVWGHCE+TMKYI
Sbjct: 137 FVVDGQYLGVAFRGLKGKTLYPIVSAVWGHCEVTMKYI 174
>gnl|CDD|240455 cd12875, SPRY_SOCS_Fbox, SPRY domain in Fbxo45 and suppressors of
cytokine signaling (SOCS) proteins. This family
consists of the SPRY domain-containing SOCS box protein
family (SPSB1-4, also known as SSB-1 to -4) as well as
F-box protein 45 (Fbxo45), a novel synaptic E3 and
ubiquitin ligase. The SPSB protein is composed of a
central SPRY protein interaction domain and a C-terminal
SOCS box. SPSB1, SPSB2, and SPSB4 interact with prostate
apoptosis response protein 4 (Par-4) and are negative
regulators that recruit the ECS E3 ubiquitin ligase
complex to polyubiquitinate inducible nitric-oxide
synthase (iNOS), resulting in its proteasomal
degradation. Fbxo45 is related to this family; it is
located N-terminal to the SPRY domain, and known to
induce the degradation of a synaptic vesicle-priming
factor, Munc13-1, via the SPRY domain, thus playing an
important role in the regulation of neurotransmission by
modulating Munc13-1 at the synapse. Suppressor of
cytokine signaling (SOCS) proteins negatively regulate
signaling from JAK-associated cytokine receptor
complexes, and play key roles in the regulation of
immune homeostasis.
Length = 171
Score = 147 bits (374), Expect = 8e-47
Identities = 55/98 (56%), Positives = 74/98 (75%), Gaps = 2/98 (2%)
Query: 7 TSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLS 66
+L+GS+ +SWGWDL N+LYHD K G +YP E + VPD+ LVILDM++GTL+
Sbjct: 76 VALLGSDSESWGWDLSTNKLYHDGKVVIG-SYPAGSA-TENYSVPDRVLVILDMEDGTLA 133
Query: 67 FVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYI 104
F +G+YLGVAFRGL G+ LYP VSAV+G+CEI ++Y+
Sbjct: 134 FEANGEYLGVAFRGLPGKLLYPAVSAVYGNCEIRIRYL 171
>gnl|CDD|240487 cd12907, SPRY_Fbox, SPRY domain in the F-box family Fbxo45. Fbxo45
is a novel synaptic E3 and ubiquitin ligase, related to
the suppressor of cytokine signaling (SOCS) proteins and
located N-terminal to a SPRY (SPla and the ryanodine
receptor) domain. Fbxo45 induces the degradation of a
synaptic vesicle-priming factor, Munc13-1, via the SPRY
domain, thus playing an important role in the regulation
of neurotransmission by modulating Munc13-1 at the
synapse. F-box motifs are found in proteins that
function as the substrate recognition component of SCF
E3 complexes.
Length = 175
Score = 102 bits (256), Expect = 6e-29
Identities = 45/98 (45%), Positives = 63/98 (64%), Gaps = 3/98 (3%)
Query: 8 SLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF 67
+L+GS+DQSWGW+L N L H+ YP + + V ++ VILDM++ TL+F
Sbjct: 76 ALLGSDDQSWGWNLVDNHLLHNGDVQG--NYPQCNNAPK-YQVGERIRVILDMEDNTLAF 132
Query: 68 VVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIG 105
++LGVAFRGL LYP VSAV+G+ E+TM Y+G
Sbjct: 133 ERGYEFLGVAFRGLPKVCLYPAVSAVYGNTEVTMVYLG 170
>gnl|CDD|240451 cd11709, SPRY, SPRY domain. SPRY domains, first identified in the
SP1A kinase of Dictyostelium and rabbit Ryanodine
receptor (hence the name), are homologous to B30.2. SPRY
domains have been identified in at least 11 protein
families, covering a wide range of functions, including
regulation of cytokine signaling (SOCS), RNA metabolism
(DDX1 and hnRNP), immunity to retroviruses (TRIM5alpha),
intracellular calcium release (ryanodine receptors or
RyR) and regulatory and developmental processes (HERC1
and Ash2L). B30.2 also contains residues in the
N-terminus that form a distinct PRY domain structure;
i.e. B30.2 domain consists of PRY and SPRY subdomains.
B30.2 domains comprise the C-terminus of three protein
families: BTNs (receptor glycoproteins of immunoglobulin
superfamily); several TRIM proteins (composed of
RING/B-box/coiled-coil or RBCC core); Stonutoxin
(secreted poisonous protein of the stonefish Synanceia
horrida). While SPRY domains are evolutionarily ancient,
B30.2 domains are a more recent adaptation where the
SPRY/PRY combination is a possible component of immune
defense. Mutations found in the SPRY-containing proteins
have shown to cause Mediterranean fever and Opitz
syndrome.
Length = 118
Score = 62.4 bits (152), Expect = 6e-14
Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 7 TSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLS 66
VG ++ SWG+D R R H + G + D +LD+D GTLS
Sbjct: 31 ERGVGDDEGSWGFDGSRLRKGHGGSSEPGG---------RPWKSGDVVGCLLDLDAGTLS 81
Query: 67 FVVDGQYLGVAFRGL--KGRKLYPIVSAVWGH 96
F ++G LGVAF L KG LYP VS G
Sbjct: 82 FSLNGVDLGVAFENLFRKGGPLYPAVSLGSGQ 113
>gnl|CDD|240456 cd12876, SPRY_SOCS3, SPRY domain in the suppressor of cytokine
signaling 3 (SOCS3) family. The SPRY domain-containing
SOCS box protein family (SPSB1-4, also known as SSB-1 to
-4) is composed of a central SPRY protein interaction
domain and a C-terminal SOCS box. All four SPSB proteins
interact with c-Met, the hepatocyte growth factor
receptor, but SOCS3 regulates cellular response to a
variety of cytokines such as leukemia inhibitory factor
(LIF) and interleukin 6. SOCS3, along with SOCS1, are
expressed by immune cells and cells of the central
nervous system (CNS) and have the potential to impact
immune processes within the CNS. In non-small cell lung
cancer (NSCLC), SOCS3 is silenced and proline-rich
tyrosine kinase 2 (Pyk2) is over-expressed; it has been
suggested that SOCS3 could be an effective way to
prevent the progression of NSCLC due to its role in
regulating Pyk2 expression.
Length = 187
Score = 61.5 bits (150), Expect = 5e-13
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 13/100 (13%)
Query: 7 TSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYP-TLLKPDETFVVPDKFLVILDMDEGTL 65
SL+G +++SWG + L+H+ G + P T ++ ++ V LDM GTL
Sbjct: 81 CSLLGLDEESWGLSY-KGLLWHN-----GESRPYTEKFGNQGTIIG----VHLDMWSGTL 130
Query: 66 SFVVDGQYLGVAFRGLK--GRKLYPIVSAVWGHCEITMKY 103
+F +G+ LGVAF GL+ G+KLYP+VS+ E+ +
Sbjct: 131 TFYKNGKPLGVAFTGLQNDGKKLYPMVSSTAAKSEMKLIN 170
>gnl|CDD|214669 smart00449, SPRY, Domain in SPla and the RYanodine Receptor.
Domain of unknown function. Distant homologues are
domains in butyrophilin/marenostrin/pyrin homologues.
Length = 122
Score = 58.1 bits (141), Expect = 4e-12
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 8 SLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF 67
+L+G + SWG+D + YH N+TG Y L+ D LD++ GT+SF
Sbjct: 31 ALLGEDKGSWGYDGDGGKKYH---NSTGPEYGLPLQEP-----GDVIGCFLDLEAGTISF 82
Query: 68 VVDGQYL-GVAFRGLK-GRKLYPIVSAVWGHCEITMKY 103
+G+YL G+AF +K LYP S + + + +
Sbjct: 83 YKNGKYLHGLAFFDVKFSGPLYPAFS-LGSGNSVRLNF 119
>gnl|CDD|216029 pfam00622, SPRY, SPRY domain. SPRY Domain is named from SPla and
the RYanodine Receptor. Domain of unknown function.
Distant homologues are domains in
butyrophilin/marenostrin/pyrin homologues.
Length = 125
Score = 56.6 bits (137), Expect = 1e-11
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 6 VTSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTL 65
L+G ++ SWG+D YH N Y F D LD++EG +
Sbjct: 31 GFRLLGDDEGSWGYDGSGGSKYH---NGESEPYG------LKFQEGDVIGCFLDLEEGEI 81
Query: 66 SFVVDGQYL-GVAFRGLK-GRKLYPIVSAVWGHCEITMKY 103
SF +G+ L G FR ++ G LYP VS + +
Sbjct: 82 SFTKNGKDLGGYTFRNVEFGGPLYPAVSLGSTGEAVQFNF 121
>gnl|CDD|240461 cd12881, SPRY_HERC1, SPRY domain in HERC1. This SPRY domain is
found in the HERC1, a large protein related to
chromosome condensation regulator RCC1. It is widely
expressed in many tissues, playing an important role in
intracellular membrane trafficking in the cytoplasm as
well as Golgi apparatus. HERC1 also interacts with
tuberous sclerosis 2 (TSC2, tuberin), which suppresses
cell growth, and results in the destabilization of TSC2.
However, the biological function of HERC1 has yet to be
defined.
Length = 160
Score = 45.8 bits (109), Expect = 3e-07
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 26 LYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVAFRGLKGRK 85
LYH+ + L + F D +LDM+E TLSF +G+ GVAF + +
Sbjct: 88 LYHNGE--------KLSRLSPKFTQGDYITCVLDMEERTLSFGKNGEEPGVAFEDVDSTE 139
Query: 86 LYPIVS 91
LYP V
Sbjct: 140 LYPCVM 145
>gnl|CDD|240462 cd12882, SPRY_RNF123, SPRY domain at N-terminus of ring finger
protein 123. This SPRY domain is found at the
N-terminus of RING finger protein 123 domain (also known
as E3 ubiquitin-protein ligase RNF123). The ring finger
domain motif is present in a variety of functionally
distinct proteins and known to be involved in
protein-protein and protein-DNA interactions. RNF123
displays E3 ubiquitin ligase activity toward the
cyclin-dependent kinase inhibitor p27 (Kip1).
Length = 128
Score = 44.2 bits (105), Expect = 8e-07
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 10 VGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVV 69
VG S+ +D R R ++ S G E +V D +D+DEGT+SF
Sbjct: 42 VGDTPDSYAYDGNRVRKWNVSTQKYG----------EPWVAGDVIGCCIDLDEGTISFYR 91
Query: 70 DGQYLGVAF---RGLKGRKLYPIVS 91
+G+ LGVAF R G +P VS
Sbjct: 92 NGRSLGVAFDNVRRGPGLAYFPAVS 116
>gnl|CDD|240465 cd12885, SPRY_RanBP_like, SPRY domain in Ran binding proteins,
SSH4, HECT E3 and SPRYD3. This family includes SPRY
domains found in Ran binding proteins (RBP or RanBPM) 9
and 10, SSH4 (suppressor of SHR3 null mutation protein
4), SPRY domain-containing protein 3 (SPRYD3) as well as
HECT, a C-terminal catalytic domain of a subclass of
ubiquitin-protein ligase (E3). RanBP9 and RanBP10 act as
androgen receptor (AR) coactivators. Both consist of the
N-terminal proline- and glutamine-rich regions, the SPRY
domain, and LisH-CTLH and CRA motifs. The SPRY domain in
SSH4 may be involved in cargo recognition, either
directly or by combination with other adaptors, possibly
leading to a higher selectivity. SPRYD3 is highly
expressed in most tissues in humans, possibly involved
in important cellular processes. HECT E3 mediates the
direct transfer of ubiquitin from E2 to substrate.
Length = 132
Score = 41.9 bits (99), Expect = 7e-06
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 18/98 (18%)
Query: 8 SLVGSNDQSWGW--DLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVI---LDMDE 62
+ G D S+G+ D GR +Y F D V+ ++
Sbjct: 44 RMPGWEDGSYGYHGDDGR--VYLGGGEGENY--------GPPFGTGD---VVGCGINFKT 90
Query: 63 GTLSFVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEIT 100
G + F +G+ LG AF + +LYP V ++
Sbjct: 91 GEIFFTKNGELLGTAFENVVKGRLYPTVGLGSPGVKVR 128
>gnl|CDD|240464 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous nuclear
ribonucleoprotein U-like (hnRNP) protein 1. This
domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of heterogeneous nuclear
ribonucleoprotein U-like (hnRNP) protein 1 (also known
as HNRPUL1 ) which is a major constituent of nuclear
matrix or scaffold and binds directly to DNA sequences
through the N-terminal acidic region named serum amyloid
P (SAP). Its function is specifically modulated by
E1B-55kDa in adenovirus-infected cells. HNRPUL1 also
participates in ATR protein kinase signaling pathways
during adenovirus infection. Two transcript variants
encoding different isoforms have been found for this
gene. When associated with bromodomain-containing
protein 7 (BRD7), it activates transcription of
glucocorticoid-responsive promoter in the absence of
ligand-stimulation.
Length = 176
Score = 38.7 bits (91), Expect = 1e-04
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 7 TSLVGSNDQSWGWDLGRNRLYHDSK-NNTGLTYPTLLKPDETFVVPDKFLVILDMD--EG 63
+ +G S+G+ + + K + G E F D LD++
Sbjct: 82 SLQLGEEKLSYGYG-STGKKSTNGKFEDYG----------EPFGEGDVIGCYLDLESEPV 130
Query: 64 TLSFVVDGQYLGVAFR---GLKGRKLYP 88
+SF +G+ LGVAFR L+G+ L+P
Sbjct: 131 EISFTKNGKDLGVAFRIDKELEGKALFP 158
>gnl|CDD|240469 cd12889, SPRY_PRY_TRIM67_9, PRY/SPRY domain in tripartite
motif-containing proteins, TRIM9 and TRIM67. This
domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of TRIM9 proteins. TRIM9 protein is
expressed mainly in the cerebral cortex, and functions
as an E3 ubiquitin ligase. It has been shown that TRIM9
is localized to the neurons in the normal human brain
and its immunoreactivity in affected brain areas in
Parkinson's disease and dementia with Lewy bodies is
severely decreased, possibly playing an important role
in the regulation of neuronal function and participating
in pathological process of Lewy body disease through its
ligase. TRIM67 negatively regulates Ras activity via
degradation of 80K-H , leading to neural
differentiation, including neuritogenesis.
Length = 172
Score = 38.0 bits (89), Expect = 3e-04
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 56 VILDMDEGTLSFVVDGQYLG-VAFRGLKGRKLYPIVS 91
V+LD+D GTLSF V+ + G VAF L G YP S
Sbjct: 121 VLLDLDRGTLSFYVNDEPQGPVAFTNLPG-LFYPAFS 156
>gnl|CDD|240453 cd12873, SPRY_DDX1, SPRY domain associated with DEAD box gene DDX1.
This SPRY domain is associated with the DEAD box gene,
DDX1, an RNA-dependent ATPase involved in HIV-1 Rev
function and virus replication. It is suggested that
DDX1 acts as a cellular cofactor by promoting
oligomerization of Rev on the Rev response element
(RRE). DDX1 RNA is overexpressed in breast cancer, data
showing a strong and independent association between
poor prognosis and deregulation of the DEAD box protein
DDX1, thus potentially serving as an effective
prognostic biomarker for early recurrence in primary
breast cancer. DDX1 also interacts with RelA and
enhances nuclear factor kappaB-mediated transcription.
DEAD-box proteins are associated with all levels of RNA
metabolism and function, and have been implicated in
translation initiation, transcription, RNA splicing,
ribosome assembly, RNA transport, and RNA decay.
Length = 155
Score = 37.2 bits (87), Expect = 5e-04
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 57 ILDMDEGTLSFVVDGQYLGVAFR---GLKGRKLYPIVS 91
+LD+D GT+SF +G+ LGVAF L+ + L+P V
Sbjct: 104 LLDLDNGTISFSKNGKDLGVAFDIPPKLRNQALFPAVC 141
>gnl|CDD|240489 cd12909, SPRY_RanBP9_10, SPRY domain in Ran binding proteins 9 and
10. This family includes SPRY domain in Ran binding
protein (RBP or RanBPM) 9 and 10, and similar proteins.
RanBP9 (also known as RanBPM), a binding partner of Ran,
is a small Ras-like GTPase that exerts multiple
functions via interactions with various proteins. RanBP9
and RanBP10 also act as androgen receptor (AR)
coactivators. Both consist of the N-terminal proline-
and glutamine-rich regions, the SPRY domain, and
LisH-CTLH and CRA motifs. SPRY domain of RanBPM forms a
complex with CD39, a prototypic member of the NTPDase
family, thus down-regulating activity substantially.
RanBP10 enhances the transcriptional activity of AR in a
ligand-dependent manner and exhibits a protein
expression pattern different from RanBPM in various cell
lines. RanBP10 is highly expressed in AR-positive
prostate cancer LNCaP cells, while RanBPM is abundant in
WI-38 and MCF-7 cells.
Length = 153
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 56 VILDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIV 90
++ + T+ + +G LG AFR L + LYP V
Sbjct: 104 CGINFVDNTIFYTKNGVNLGTAFRDLPDKNLYPTV 138
>gnl|CDD|240477 cd12897, SPRY_PRY_TRIM50_62_72, PRY/SPRY domain in tripartite
motif-binding (TRIM) proteins TRIM50, TRIM62 and TRIM72.
This domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of several TRIM proteins, including
TRIM72, TRIM62 and TRIM50. TRIM72 (also known as MG53)
has been shown to perform a critical function in
membrane repair following acute muscle injury by
nucleating the assembly of the repair machinery at
injury sites. It is expressed specifically in skeletal
muscle and heart, and tethered to the plasma membrane
and cytoplasmic vesicles via its interaction with
phosphatidylserine. TRIM62 is involved in the
morphogenesis of the mammary gland; loss of TRIM62 gene
expression in breast is associated with increased risk
of recurrence in early-onset breast cancer. TRIM50, an
E3 ubiquitin ligase, is deleted in Williams-Beuren (WBS)
syndrome, a multi-system neurodevelopmental disorder
caused by the deletion of contiguous genes at chromosome
region 7q11.23.
Length = 186
Score = 31.5 bits (72), Expect = 0.065
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 51 PDKFLVILDMDEGTLSFV-VDGQYLGVAFRGLKGRKLYPIVSAVWGH 96
P K V LD +EG +SF D L F KL+P S W
Sbjct: 129 PQKIGVFLDCEEGEVSFYDADDMSLLYTFHEGFPGKLFPFFSTCWHD 175
>gnl|CDD|240467 cd12887, SPRY_NHR_like, SPRY domain in neuralized homology repeat.
This family contains the neuralized homology repeat 1
(NHR1) domain similar to the SPRY domain (known to
mediate specific protein-protein interactions) at the
C-terminus of a conserved region within eukaryotic
neuralized and neuralized-like proteins. In Drosophila,
the neuralized protein (Neur) belongs to a group of
ubiquitin ligases and is required in a subset of Notch
pathway-mediated cell fate decisions during development
of the nervous system. Neur binds to the Notch receptor
ligand Delta through its first NHR1 domain and mediates
its ubiquitination for endocytosis. Multiple copies of
this region are found in some members of the family.
Length = 161
Score = 30.9 bits (71), Expect = 0.077
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 62 EGTLSFVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCE 98
+G+L F ++G+ GVA + + +Y +V ++G CE
Sbjct: 122 DGSLHFYINGEDQGVAASNI-PQPVYAVVD-LYGQCE 156
>gnl|CDD|240471 cd12891, SPRY_PRY_C-IV_2, PRY/SPRY domain in tripartite
motif-containing (TRIM) proteins, including TRIM14-like,
TRIM16-like, TRIM25-like, TRIM47-like and RNF135 and
stonustoxin. This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of several Class IV TRIM
proteins, including TRIM14, TRIM16 and TRIM25, TRIM47
as well as RING finger protein RNF135 and stonustoxin, a
secreted poisonous protein of the stonefish Synanceja
horrida. TRIM16 (also known as estrogen-responsive B box
protein or EBBP) has E3 ubiquitin ligase activity. It is
a regulator of keratinocyte differentiation and a tumor
suppressor in retinoid-sensitive neuroblastoma. TRIM25
(also called Efp) ubiquitinates the N terminus of the
viral RNA receptor retinoic acid-inducible gene-I
(RIG-I) in response to viral infection, leading to
activation of the RIG-I signaling pathway, thus
resulting in type I interferon production to limit viral
replication. It has been shown that the influenza A
virus targets TRIM25 and disables its antiviral
function. TRIM47, also known as GOA (Gene overexpressed
in astrocytoma protein) or RNF100 (RING finger protein
100), is highly expressed in kidney tubular cells, but
low expressed in most tissue. It is overexpressed in
astrocytoma tumor cells and plays an important role in
the process of dedifferentiation that is associated with
astrocytoma tumorigenesis. RNF135 ubiquitinates RIG-I
(retinoic acid-inducible gene-I) to promote
interferon-beta induction during the early phase of
viral infection. Stonustoxin (STNX) is a hypotensive and
lethal protein factor that also possesses other
biological activities such as species-specific hemolysis
(due to its ability to form pores in the cell membrane)
and platelet aggregation, edema-induction, and
endothelium-dependent vasorelaxation (mediated by the
nitric oxide pathway and activation of potassium
channels).
Length = 169
Score = 29.8 bits (68), Expect = 0.24
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
Query: 8 SLVGSNDQSWGWDLGRNRLY--HDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTL 65
S +G ND+SW + ++ H++K T L P + V LD + GTL
Sbjct: 83 SRLGRNDKSWCLEWSGDKYSAWHNNK-ETPLPGPP----------SSRIGVYLDYEAGTL 131
Query: 66 SF 67
SF
Sbjct: 132 SF 133
>gnl|CDD|240452 cd12872, SPRY_Ash2, SPRY domain in Ash2. This SPRY domain is found
at the C-terminus of Ash2 (absent, small, or homeotic
discs 2) -like proteins, core components of all
mixed-lineage leukemia (MLL) family histone
methyltransferases. Ash2 is a member of the trithorax
group of transcriptional regulators of the Hox genes.
Recent studies show that the SPRY domain of Ash2
mediates the interaction with RbBP5 and has an important
role in regulating the methyltransferase activity of MLL
complexes. In yeast, Ash2 is involved in histone
methylation and is required for the earliest stages of
embryogenesis.
Length = 149
Score = 29.4 bits (67), Expect = 0.24
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 65 LSFVVDGQYLGVAFRGLKGRKLY-PIVS 91
+ F +G+ GVAF + G Y P VS
Sbjct: 106 IEFFKNGKSQGVAFEDIYGTGGYYPAVS 133
>gnl|CDD|240492 cd13734, SPRY_PRY_C-I, PRY/SPRY domain in tripartite
motif-containing proteins 1, 9, 18, 36, 46, 67,76
(TRIM1, TRIM9, TRIM18, TRIM36, TRIM46, TRIM67, TRIM76).
This domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of several Class I TRIM proteins,
including TRIM1, TRIM9, TRIM18, TRIM36, TRIM46, TRIM67
and TRIM76. TRIM1 (also known as MID2) and its close
homolog, TRIM18 (also known as MID1), both contain a
B30.2-like domain at their C-terminus and a single
fibronectin type III (FN3) motif between it and their
N-terminal RBCC domain. Their coiled-coil motifs mediate
both homo- and heterodimerization, a prerequisite for
association of the rapamycin-sensitive PP2A regulatory
subunit Alpha 4 with microtubules. Mutations in TRIM18
have shown to cause Opitz syndrome, a disorder causing
congenital anomalies such as cleft lip and palate as
well as heart defects. TRIM9 is expressed mainly in the
cerebral cortex, and functions as an E3 ubiquitin
ligase. Its immunoreactivity is severely decreased in
affected brain areas in Parkinson's disease and dementia
with Lewy bodies, possibly playing an important role in
the regulation of neuronal function and participating in
pathological process of Lewy body disease through its
ligase. TRIM36 interacts with centromere protein-H, one
of the kinetochore proteins and possibly associates with
chromosome segregation; an excess of TRIM36 may cause
chromosomal instability. TRIM46 has not yet been
characterized. TRIM67 negatively regulates Ras activity
via degradation of 80K-H, leading to neural
differentiation, including neuritogenesis. TRIM76 (also
known as cardiomyopathy-associated protein 5 or CMYA5)
is a muscle-specific member of the TRIM superfamily, but
lacks the RING domain. It is possibly involved in
protein kinase A signaling as well as vesicular
trafficking. It has also been implicated in Duchenne
muscular dystrophy and cardiac disease.
Length = 169
Score = 29.2 bits (66), Expect = 0.36
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 12/60 (20%)
Query: 10 VGSNDQSWGWDLGRNRLY--HDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF 67
+G N SW NR HD K T P + V+LD D GTLSF
Sbjct: 84 LGKNSTSWCLRRTNNRYSARHDGKVV---------DLTVT-PHPRRIGVLLDYDRGTLSF 133
>gnl|CDD|240466 cd12886, SPRY_like, SPRY domain-like in bacteria. This family
contains SPRY-like domains that are found only in
bacterial and are mostly uncharacterized. SPRY domains,
first identified in the SP1A kinase of Dictyostelium
and rabbit Ryanodine receptor (hence the name), are
homologous to B30.2. SPRY domains have been identified
in at least 11 eukaryotic protein families, covering a
wide range of functions, including regulation of
cytokine signaling (SOCS), RNA metabolism (DDX1 and
hnRNP), immunity to retroviruses (TRIM5alpha),
intracellular calcium release (ryanodine receptors or
RyR) and regulatory and developmental processes (HERC1
and Ash2L).
Length = 128
Score = 29.0 bits (65), Expect = 0.36
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 7 TSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYP---TLLKPDETFVVPDKFLVILDMDEG 63
+ +G S+G+ LG ++G TY T+ F D V LD+D G
Sbjct: 30 NNGLGIELSSYGYSLG---------VSSGNTYSGGSTVASFGAGFTAGDVIGVALDLDAG 80
Query: 64 TLSFVVDGQYLGVA 77
+ F +G + G
Sbjct: 81 KIWFYKNGVWQGSG 94
>gnl|CDD|240459 cd12879, SPRY3_RyR, SPRY domain 3 (SPRY3) of ryanodine receptor
(RyR). This SPRY domain (SPRY3) is the third of three
structural repeats in all three isoforms of the
ryanodine receptor (RyR), which are the major Ca2+
release channels in the membranes of sarcoplasmic
reticulum (SR). There are three RyR genes in mammals;
the skeletal RyR1, the cardiac RyR2 and the brain RyR3.
The three SPRY domains are located in the N-terminal
part of the cytoplasmic region of the RyRs, but no
specific function has been found for this third SPRY
domain of the RyRs.
Length = 151
Score = 27.7 bits (62), Expect = 1.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 57 ILDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIV 90
++D G L+F +G+ G F+ G KL+P V
Sbjct: 103 LIDTATGLLTFTANGKETGTRFQVEPGTKLFPAV 136
>gnl|CDD|240473 cd12893, SPRY_PRY_TRIM35, PRY/SPRY domain in tripartite
motif-containing protein 35 (TRIM35). This PRY/SPRY
domain is found at the C-terminus of the overall domain
architecture of tripartite motif 35, TRIM35 (also known
as hemopoietic lineage switch protein), which includes a
RING finger domain (RING) and a B-box motif (BBOX).
TRIM35 may play a role as a tumor suppressor and is
implicated in the cell death mechanism.
Length = 171
Score = 26.9 bits (60), Expect = 2.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 51 PDKFLVILDMDEGTLSF 67
P + V LD DEG LSF
Sbjct: 118 PQRIRVQLDWDEGKLSF 134
>gnl|CDD|236421 PRK09231, PRK09231, fumarate reductase flavoprotein subunit;
Validated.
Length = 582
Score = 26.5 bits (59), Expect = 3.3
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 34 TGLTYPTLLKPDETFV----VPD---KFLVILDMDEGTL 65
T L YP + + DE FV V D + LV ++M EGTL
Sbjct: 142 TSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTL 180
>gnl|CDD|240481 cd12901, SPRY_PRY_FSD1, Fibronectin type III and SPRY containing 1
(FSD1) domain includes PRY at the N-terminus. This
domain is part of the fibronectin type III and SPRY
domain containing 1 (FSD1) and FSD1-like (FSD1L)
proteins. These are centrosome-associated proteins that
are characterized by an N-terminal coiled-coil region
downstream of B-box (BBC) domain, a central fibronectin
type III (FN3) domain, and C-terminal repeats in
PRY/SPRY domain. The FSD1 protein associates with a
subset of microtubules and may be involved in the
stability and organization of microtubules during
cytokinesis.
Length = 203
Score = 26.3 bits (58), Expect = 3.5
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 50 VPDKFLVILDMDEGTLSFV-VDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGGLD 108
VPD+ V + D G LSF D + L F+ + + P VW C GGL
Sbjct: 145 VPDRIGVYCNYDNGFLSFYDADTKQLLHTFKTKFTQPVLPAFM-VW--C-------GGLS 194
Query: 109 LYTSYLTP 116
+ T P
Sbjct: 195 VQTGLQVP 202
>gnl|CDD|240476 cd12896, SPRY_PRY_TRIM65, PRY/SPRY domain in tripartite
motif-containing domain 65 (TRIM65). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of TRIM65 proteins (composed of
RING/B-box/coiled-coil core and also known as RBCC
proteins). The SPRY/PRY combination is a possible
component of immune defense. This protein family has not
been characterized.
Length = 182
Score = 26.2 bits (58), Expect = 3.5
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 10 VGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF-- 67
+G N SWG + + Y N P T + V LD + GTL+F
Sbjct: 97 IGRNPLSWGLQV-QEDCYSAWHNGEEQQLQ---GPSYTKLG-----VSLDCEAGTLTFYG 147
Query: 68 VVDGQYLGVAFRGLKGRKLYPI 89
+ DG +F + + L+P+
Sbjct: 148 LGDGTQPLHSFHCIFTQPLFPV 169
>gnl|CDD|240485 cd12905, SPRY_PRY_TRIM_Bty_69_NF7, PRY/SPRY domain in tripartite
motif-containing protein 69 (TRIM69), Bloodthirsty (bty)
and NF7. This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of TRIM69 and TRIM proteins
NF7 and bloodthirsty (bty). TRIM69 is a novel testis E3
ubiquitin ligase that may function to ubiquitinate its
particular substrates during spermatogenesis. In humans,
TRIM69 localizes in the cytoplasm and nucleus, and
requires an intact RING finger domain to function. TRIM
protein NF7, which also contains a chromodomain (CHD) at
the N-terminus and an RFP (Ret finger protein)-like
domain at the C-terminus, is required for its
association with transcriptional units of RNA polymerase
II which is mediated by a trimeric B box. In Xenopus
oocyte, xNF7 has been identified as a nuclear
microtubule-associated protein (MAP) whose
microtubule-bundling activity, but not E3-ligase
activity, contributes to microtubule organization and
spindle integrity. Bloodthirsty (bty) is a novel gene
identified in zebrafish and has been shown to likely
play a role in in regulation of the terminal steps of
erythropoiesis.
Length = 176
Score = 25.7 bits (57), Expect = 5.0
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 49 VVPDKFLVILDMDEGTLSFV-VDGQYLGVAFRGLKGRKLYPIVS 91
P K V LD + G +SF D F KLYP S
Sbjct: 117 SKPQKVGVFLDYEGGQVSFYDADTMTHIYTFTDTFTEKLYPYFS 160
>gnl|CDD|234495 TIGR04192, GRASP_w_spasm, ATP-GRASP peptide maturase,
grasp-with-spasm system. Members of this protein family
are ATP-GRASP proteins that occur in a peptide
maturation cassette with a SPASM domain protein. SPASM
(TIGR04085) usually occurs as a C-terminal extension to
radical SAM enzymes that act as peptide maturases,
although it can occur independently.
Length = 318
Score = 25.9 bits (57), Expect = 5.3
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 27 YHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDE 62
N + TY L+ ++ +P+ F L ++
Sbjct: 172 IISQDNQSYYTYTELITQEKFAGLPENFFPSLIQEK 207
>gnl|CDD|240457 cd12877, SPRY1_RyR, SPRY domain 1 (SPRY1) of ryanodine receptor
(RyR). This SPRY domain is the first of three
structural repeats in all three isoforms of the
ryanodine receptor (RyR), which are the major Ca2+
release channels in the membranes of sarcoplasmic
reticulum (SR). There are three RyR genes in mammals;
the skeletal RyR1, the cardiac RyR2 and the brain RyR3.
The three SPRY domains are located in the N-terminal
part of the cytoplasmic region of the RyRs, but no
specific function has been found for this first SPRY
domain of the RyRs.
Length = 151
Score = 25.0 bits (55), Expect = 8.5
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 22/94 (23%)
Query: 6 VTSLVGSNDQSWG------WDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILD 59
+ VG + S+G W GR+R + LLK D LD
Sbjct: 60 GGNGVGDDLYSYGFDGLHLWTGGRSRRVTSGTQH-------LLKKG------DVVGCCLD 106
Query: 60 MDEGTLSFVVDGQYLGVAFRG--LKGRKLYPIVS 91
+ ++SF V+G+ + F L G +P++S
Sbjct: 107 LSVPSISFRVNGRPVQGMFENFNLDG-MFFPVMS 139
>gnl|CDD|203039 pfam04536, Repair_PSII, Repair protein. In plants, this domain
plays a role in the photosystem II (PSII) repair cycle.
It may be involved in the regulation of
synthesis/degradation of the D1 protein of the PSII
core and in the assembly of PSII monomers into dimers
in the grana stacks. Its function in other organisms is
unknown.
Length = 120
Score = 24.8 bits (55), Expect = 8.9
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 18/76 (23%)
Query: 1 MAVCLVTSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDM 60
+ V V SL G + + + DL D++++ G+ L+++ +
Sbjct: 25 IVVVTVPSLDGEDIEDYALDLFDAWGLGDTEDDNGV------------------LLLVAL 66
Query: 61 DEGTLSFVVDGQYLGV 76
++ + V G
Sbjct: 67 NDRKVRIEVGYGLEGR 82
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.142 0.450
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,951,453
Number of extensions: 521846
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 38
Length of query: 117
Length of database: 10,937,602
Length adjustment: 80
Effective length of query: 37
Effective length of database: 7,389,282
Effective search space: 273403434
Effective search space used: 273403434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)