RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2942
(117 letters)
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription
regulation, transcription; 1.79A {Homo sapiens} PDB:
3f2o_A 2fnj_A 2v24_A 2ihs_A
Length = 212
Score = 138 bits (349), Expect = 8e-43
Identities = 78/102 (76%), Positives = 90/102 (88%)
Query: 7 TSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLS 66
T+LVG+N +SWGWDLGRNRLYHD KN TYP L+PDETF+VPD FLV LDMD+GTLS
Sbjct: 109 TTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLS 168
Query: 67 FVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGGLD 108
F+VDGQY+GVAFRGLKG+KLYP+VSAVWGHCEI M+Y+ GLD
Sbjct: 169 FIVDGQYMGVAFRGLKGKKLYPVVSAVWGHCEIRMRYLNGLD 210
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR
{Mus musculus} SCOP: b.29.1.22
Length = 226
Score = 136 bits (342), Expect = 1e-41
Identities = 55/107 (51%), Positives = 74/107 (69%), Gaps = 1/107 (0%)
Query: 7 TSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLS 66
+L+GSN +SWGWD+GR +LYH SK YP + E VVP++ LV+LDM+EGTL
Sbjct: 116 AALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQG-EQLVVPERLLVVLDMEEGTLG 174
Query: 67 FVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGGLDLYTSY 113
+ + G YLG AFRGLKGR LYP VSAVWG C++ ++Y+G + +
Sbjct: 175 YSIGGTYLGPAFRGLKGRTLYPSVSAVWGQCQVRIRYMGERRVEETR 221
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus,
apoptosis, UBL conjugation pathwayc, CL transcription
regulation, transcription, phosphoprotein; 1.80A {Homo
sapiens} PDB: 3ek9_A
Length = 217
Score = 129 bits (325), Expect = 3e-39
Identities = 54/99 (54%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Query: 7 TSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLS 66
+L+GSN +SWGWD+GR +LYH SK YP E VP++ LV+LDM+EGTL
Sbjct: 119 AALLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAG-TQGEQLEVPERLLVVLDMEEGTLG 177
Query: 67 FVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIG 105
+ + G YLG AFRGLKGR LYP VSAVWG C++ ++Y+G
Sbjct: 178 YAIGGTYLGPAFRGLKGRTLYPAVSAVWGQCQVRIRYLG 216
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on
protein structural and functional analyses; 2.00A {Homo
sapiens}
Length = 171
Score = 53.0 bits (127), Expect = 5e-10
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 3/89 (3%)
Query: 4 CLVTSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEG 63
+ G S + +LY+ G + + + + V D+
Sbjct: 65 YSLDHQPGWLPDSVAYHADDGKLYNGRA--KGRQFGSKCNSGDRIGCGIEP-VSFDVQTA 121
Query: 64 TLSFVVDGQYLGVAFRGLKGRKLYPIVSA 92
+ F +G+ +G + L+P V
Sbjct: 122 QIFFTKNGKRVGSTIMPMSPDGLFPAVGM 150
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription,
SPRY domain, prote binding, histone methylation, RBBP5,
DPY-30, nuclear; 2.07A {Homo sapiens}
Length = 213
Score = 49.9 bits (119), Expect = 9e-09
Identities = 17/106 (16%), Positives = 41/106 (38%), Gaps = 18/106 (16%)
Query: 4 CLVTSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEG 63
+ + +G + S+ W + +H + G Y + D +++ E
Sbjct: 77 GNLQAPLGYDKFSYSWRSKKGTKFH---QSIGKHY------SSGYGQGDVLGFYINLPED 127
Query: 64 TLSFV--------VDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITM 101
T+S +G GVA++ + +P +S ++ C +++
Sbjct: 128 TISGRGSSEIIFYKNGVNQGVAYKDIFEGVYFPAIS-LYKSCTVSI 172
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.41
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 15/51 (29%)
Query: 56 VILDMDEGTLS---------FVVDGQYLGVA-FRGLKGRKLYPIVSAVWGH 96
++G LS ++ A F LK + L P + GH
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLM-----EKAAFEDLKSKGLIPADATFAGH 1762
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 170
Score = 26.1 bits (57), Expect = 2.5
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 19 WDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVAF 78
W + + D ++ L + E V + G L V+G+ GVA
Sbjct: 93 WVVSGCSVLRDGRSVLEEYGQDLDQLGEGDRV-----GVERTVAGELRLWVNGRDCGVAA 147
Query: 79 RGLKGRKLYPIVSAVWGHCE 98
GL +++ +V ++G C
Sbjct: 148 TGL-PPRVWAVV-DLYGKCT 165
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY,
TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo
sapiens}
Length = 193
Score = 25.3 bits (56), Expect = 4.8
Identities = 21/92 (22%), Positives = 28/92 (30%), Gaps = 14/92 (15%)
Query: 11 GSNDQSW--GWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF- 67
+ W G G+ H L P+ P + + L +G LSF
Sbjct: 98 VPSQGLWLLGLREGKILEAHVEAKEP----RALRSPERR---PTRIGLYLSFGDGVLSFY 150
Query: 68 -VVDGQYLGV--AFRGLKGRKLYPIVSAVWGH 96
D L AF R +YP V H
Sbjct: 151 DASDADALVPLFAFHERLPRPVYPFFD-VCWH 181
>3bkr_A Sterol carrier protein-2 like-3; mosquito, fatty acid, palmitic
acid, cholesterol, lipid binding protein; HET: PLM;
1.40A {Aedes aegypti} PDB: 3bks_A*
Length = 126
Score = 24.7 bits (53), Expect = 7.2
Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 2/57 (3%)
Query: 11 GSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF 67
G +S D ++ T + D + + D + SF
Sbjct: 44 GKVVRSVVLDFNDLKISEIELAVTSTADYPAERIDASITIDDNDFY--LVATKETSF 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.142 0.450
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,831,018
Number of extensions: 100734
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 16
Length of query: 117
Length of database: 6,701,793
Length adjustment: 80
Effective length of query: 37
Effective length of database: 4,468,113
Effective search space: 165320181
Effective search space used: 165320181
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)