RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2942
         (117 letters)



>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 217

 Score =  113 bits (284), Expect = 2e-33
 Identities = 83/101 (82%), Positives = 93/101 (92%)

Query: 8   SLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF 67
           SLVGS +QSWGWDLGRN+LYHDSKN  G+TYP +LK DE F+VPDKFLV LDMDEGTLSF
Sbjct: 101 SLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSF 160

Query: 68  VVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGGLD 108
           +VD QYLG+AFRGL+G+KLYPIVSAVWGHCEITM+YIGGLD
Sbjct: 161 IVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRYIGGLD 201


>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box
           protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 213

 Score = 95.3 bits (236), Expect = 2e-26
 Identities = 55/99 (55%), Positives = 71/99 (71%), Gaps = 1/99 (1%)

Query: 8   SLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF 67
           +L+GSN +SWGWD+GR +LYH SK      YP      E  VVP++ LV+LDM+EGTL +
Sbjct: 111 ALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGP-QGEQLVVPERLLVVLDMEEGTLGY 169

Query: 68  VVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGG 106
            + G YLG AFRGLKGR LYP VSAVWG C++ ++Y+G 
Sbjct: 170 SIGGTYLGPAFRGLKGRTLYPSVSAVWGQCQVRIRYMGE 208


>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 188

 Score = 26.9 bits (59), Expect = 0.49
 Identities = 9/88 (10%), Positives = 27/88 (30%), Gaps = 16/88 (18%)

Query: 10  VGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF-- 67
           +  + +     +G       + +   +T   +           +  + LD+   +++F  
Sbjct: 92  IELSSEHGFLTVGCREGKVFAASTVPMTPLWVSPQ------LHRVGIFLDVGMRSIAFYN 145

Query: 68  VVDGQYL----GVAFRGLKGRKLYPIVS 91
           V DG ++     +           P  +
Sbjct: 146 VSDGCHIYTFIEIPVCE----PWRPFFA 169


>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 243

 Score = 25.0 bits (53), Expect = 3.0
 Identities = 7/15 (46%), Positives = 9/15 (60%), Gaps = 1/15 (6%)

Query: 51 PDKFLVILDMDEGTL 65
          P   L + D+D GTL
Sbjct: 1  PGPALCLFDVD-GTL 14


>d2aj7a1 b.158.1.1 (A:1-148) Hypothetical protein BH3618 {Bacillus
          halodurans [TaxId: 86665]}
          Length = 148

 Score = 24.3 bits (53), Expect = 3.7
 Identities = 4/27 (14%), Positives = 11/27 (40%)

Query: 36 LTYPTLLKPDETFVVPDKFLVILDMDE 62
          +  P    P+    +P+  +  L++  
Sbjct: 61 IVNPFSFFPEYRVKLPEATIAQLNITN 87


>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 291

 Score = 24.1 bits (52), Expect = 4.5
 Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 51 PDKFLVILDMDEGTLS-FVVDGQYLGVAFRGLKGRKLYP 88
            K  +I D D  TLS F  +G+        +   KL  
Sbjct: 35 AAKLQIITDFD-MTLSRFSYNGKRCPTCHNIIDNCKLVT 72


>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score = 24.4 bits (52), Expect = 5.2
 Identities = 6/42 (14%), Positives = 16/42 (38%)

Query: 17  WGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVIL 58
           + W  G ++ + +      +  P +      ++ P    V+L
Sbjct: 419 FFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLL 460


>d2feaa1 c.108.1.20 (A:2-227)
          2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
          phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}
          Length = 226

 Score = 23.8 bits (50), Expect = 7.1
 Identities = 6/13 (46%), Positives = 8/13 (61%), Gaps = 1/13 (7%)

Query: 53 KFLVILDMDEGTL 65
          K  +I D D GT+
Sbjct: 4  KPFIICDFD-GTI 15


>d1hynp_ d.112.1.2 (P:) Erythrocite membrane Band 3 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 293

 Score = 23.7 bits (51), Expect = 7.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 55 LVILDMDEGTLSFVVD 70
           V+LD+ E +L+ V +
Sbjct: 63 TVLLDLQETSLAGVAN 78


>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain
           {Penicillium minioluteum [TaxId: 28574]}
          Length = 373

 Score = 23.5 bits (50), Expect = 9.5
 Identities = 5/33 (15%), Positives = 12/33 (36%)

Query: 3   VCLVTSLVGSNDQSWGWDLGRNRLYHDSKNNTG 35
           +     +     Q+ G ++  N + HD   +  
Sbjct: 161 ISDYKQVGAFFFQTDGPEIYPNSVVHDVFWHVN 193


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.142    0.450 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 449,730
Number of extensions: 19002
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 14
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)