BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2945
(134 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P00428|COX5B_BOVIN Cytochrome c oxidase subunit 5B, mitochondrial OS=Bos taurus
GN=COX5B PE=1 SV=2
Length = 129
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 43 LPDPLDLATGLEKRELLAELAGDPDPFNVKIRKRGLGTKTQPTEVPSAFEARIVGCICEE 102
+P + ATGLE+ +LA G DP+N+ K GTK P VPS RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREVMLAARKGQ-DPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEE 95
Query: 103 ESPSINWMWLYEGKPKRC-MCGHWFKLV 129
++ ++ W WL++G+ +RC CG +KLV
Sbjct: 96 DNSTVIWFWLHKGEAQRCPSCGTHYKLV 123
>sp|P10606|COX5B_HUMAN Cytochrome c oxidase subunit 5B, mitochondrial OS=Homo sapiens
GN=COX5B PE=1 SV=2
Length = 129
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 43 LPDPLDLATGLEKRELLAELAGDPDPFNVKIRKRGLGTKTQPTEVPSAFEARIVGCICEE 102
+P + ATGLE+ +LA G DP+NV K GT+ P VPS RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKG-LDPYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 103 ESPSINWMWLYEGKPKRC-MCGHWFKLV 129
++ S+ W WL++G+ +RC CG +KLV
Sbjct: 96 DNTSVVWFWLHKGEAQRCPRCGAHYKLV 123
>sp|Q710D6|COX5B_VULVU Cytochrome c oxidase subunit 5B, mitochondrial OS=Vulpes vulpes
GN=COX5B PE=1 SV=1
Length = 128
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 43 LPDPLDLATGLEKRELLAELAGDPDPFNVKIRKRGLGTKTQPTEVPSAFEARIVGCICEE 102
+P + ATGLE+ ++A G DP+N+ K GTK P VPS RIVGCICEE
Sbjct: 36 VPTDDEQATGLEREVMMAARKG-LDPYNILAPKAAAGTKEDPNLVPSITNKRIVGCICEE 94
Query: 103 ESPSINWMWLYEGKPKRC-MCGHWFKLV 129
++ ++ W WL++G+ +RC CG +KLV
Sbjct: 95 DNSTVIWFWLHKGEAQRCPSCGTHYKLV 122
>sp|Q5REG2|COX5B_PONAB Cytochrome c oxidase subunit 5B, mitochondrial OS=Pongo abelii
GN=COX5B PE=2 SV=1
Length = 129
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 43 LPDPLDLATGLEKRELLAELAGDPDPFNVKIRKRGLGTKTQPTEVPSAFEARIVGCICEE 102
+P + ATGLE+ +LA G DP+NV K GT+ P VPS RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKG-LDPYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 103 ESPSINWMWLYEGKPKRC-MCGHWFKLV 129
++ S+ W WL++G+ +RC CG +KLV
Sbjct: 96 DNTSVVWFWLHKGEAQRCPRCGAHYKLV 123
>sp|Q5S3G4|COX5B_PIG Cytochrome c oxidase subunit 5B, mitochondrial OS=Sus scrofa
GN=COX5B PE=2 SV=1
Length = 129
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 43 LPDPLDLATGLEKRELLAELAGDPDPFNVKIRKRGLGTKTQPTEVPSAFEARIVGCICEE 102
+P + ATGLE+ ++A G DP+N+ K GTK P VPS RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREVMMAARKG-LDPYNILAPKAASGTKEDPNLVPSITNKRIVGCICEE 95
Query: 103 ESPSINWMWLYEGKPKRC-MCGHWFKLV 129
++ ++ W W+++G+ +RC CG +KLV
Sbjct: 96 DNSTVIWFWVHKGETQRCPSCGTHYKLV 123
>sp|P12075|COX5B_RAT Cytochrome c oxidase subunit 5B, mitochondrial OS=Rattus norvegicus
GN=Cox5b PE=1 SV=2
Length = 129
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 43 LPDPLDLATGLEKRELLAELAGDPDPFNVKIRKRGLGTKTQPTEVPSAFEARIVGCICEE 102
+P + ATGLE+ ++A G DP+N+ K GTK P VPS RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMIAAQRGL-DPYNMLPPKAASGTKEDPNLVPSVSNKRIVGCICEE 95
Query: 103 ESPSINWMWLYEGKPKRC-MCGHWFKLV 129
++ ++ W WL++G+ +RC CG +KLV
Sbjct: 96 DNCTVIWFWLHQGESQRCPNCGTHYKLV 123
>sp|P19536|COX5B_MOUSE Cytochrome c oxidase subunit 5B, mitochondrial OS=Mus musculus
GN=Cox5b PE=1 SV=1
Length = 128
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 43 LPDPLDLATGLEKRELLAELAGDPDPFNVKIRKRGLGTKTQPTEVPSAFEARIVGCICEE 102
+P + ATGLE+ ++A G DP+N+ K GTK P VPS RIVGCICEE
Sbjct: 36 VPTDEEQATGLEREIMIAAQKG-LDPYNMLPPKAASGTKEDPNLVPSISNKRIVGCICEE 94
Query: 103 ESPSINWMWLYEGKPKRC-MCGHWFKLV 129
++ ++ W WL++G+ +RC CG +KLV
Sbjct: 95 DNCTVIWFWLHKGESQRCPNCGTHYKLV 122
>sp|P79010|COX4_SCHPO Cytochrome c oxidase subunit 4, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cox4 PE=2 SV=1
Length = 164
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 42 ELPDPLDLATGLEKRELLAELAGDPDPFNVK-IRKRGLGTKTQPTEVPSAFEARIVGCIC 100
E+P L+ ATGLE+ ELL+EL+G D F++K + GT T P V S R +GC
Sbjct: 64 EVPTDLEQATGLERYELLSELSGR-DAFDMKPLDASRKGTLTDPIMVTSLDPYRHIGCTG 122
Query: 101 E-EESPSINWMWLYEGKPKRC-MCGHWFKLVY 130
S ++ WM +Y+ K +RC CG +KL +
Sbjct: 123 SPSGSHNLIWMTVYKDKLRRCPECGSVYKLKF 154
>sp|Q9SSB8|CX5B2_ARATH Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis
thaliana GN=COX5B-2 PE=2 SV=1
Length = 171
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 43 LPDPLDLATGLEKRELLAELAGDPDPFNVKIRKRGLGTKTQPTEVPSAFEARIVGCIC-- 100
+ D + +ATG EK EL AEL G ++ + GTK P V S ++ RIVGC
Sbjct: 67 VEDVMPIATGHEKEELQAELEGRKLD-DIDFPEGPFGTKEAPAVVKSYYDMRIVGCPGGE 125
Query: 101 EEESPSINWMWLYEGKPKRC-MCGHWFKL 128
E+ + W WL +GK C +C +FKL
Sbjct: 126 GEDEHDVVWFWLEKGKSFECPVCTQYFKL 154
>sp|P06809|COX4_NEUCR Cytochrome c oxidase subunit 4, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=cox-4 PE=3 SV=2
Length = 186
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 43 LPDPLDLATGLEKRELLAELAGDPDPFNVK-IRKRGLGTKTQPTEVPSAFEARIVGCIC- 100
+P L+ ATGLE+ E+L ++ G D F++K + GT P V SA + + GC
Sbjct: 63 VPTDLEQATGLERLEILGKMEG-VDVFDMKPLDASRRGTMENPISVRSAGDEQYAGCTGF 121
Query: 101 EEESPSINWMWLYEGKP-KRC-MCGHWFKLVYKAP 133
+S ++ W+ + +P +RC CG+ +K+ Y P
Sbjct: 122 PADSHNVIWLTMTRERPVERCPECGNVYKMDYVGP 156
>sp|Q9LW15|CX5B1_ARATH Cytochrome c oxidase subunit 5b-1, mitochondrial OS=Arabidopsis
thaliana GN=COX5B-1 PE=2 SV=1
Length = 176
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Query: 12 PNTRYLARSVTATGNSFSTCAQRWNKNDLD-----ELPDPLDLATGLEKRELLAELAGDP 66
P YLA + +A S +R++ + ++ ++ D + +ATG EK EL AEL G
Sbjct: 32 PVGFYLAANRSAISASSFVIPRRFSSDSVETPATKKVEDVMPIATGHEKEELEAELEGRR 91
Query: 67 DPFNVKIRKRGLGTKTQPTEVPSAFEARIVGCIC--EEESPSINWMWLYEGKPKRC-MCG 123
++ + GTK P V S ++ RIVGC E+ + W WL +GK C +C
Sbjct: 92 LD-DIDFPEGPFGTKEAPAIVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCT 150
Query: 124 HWFKL 128
+F+L
Sbjct: 151 QYFEL 155
>sp|P04037|COX4_YEAST Cytochrome c oxidase subunit 4, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COX4 PE=1
SV=1
Length = 155
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 43 LPDPLDLATGLEKRELLAELAGDPDPFNVK-IRKRGLGTKTQPTEVPSAFEARIVGCICE 101
+P LD TGL + ELL +L G D F+ K + GT P + S + R VGC
Sbjct: 56 VPTDLDQETGLARLELLGKLEG-IDVFDTKPLDSSRKGTMKDPIIIESYDDYRYVGCTGS 114
Query: 102 EE-SPSINWMWLYEGKPKRC-MCGHWFKL 128
S +I W+ + RC CG +KL
Sbjct: 115 PAGSHTIMWLKPTVNEVARCWECGSVYKL 143
>sp|Q9SSS5|CX5BL_ARATH Putative cytochrome c oxidase subunit 5b-like OS=Arabidopsis
thaliana GN=At1g52710 PE=2 SV=2
Length = 90
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 78 LGTKTQPTEVPSAFEARIVGCIC--EEESPSINWMWLYEGKPKRC-MCGHWFK 127
GTK P V S F+ R +GC E+ + W WL +GK C +C +F+
Sbjct: 23 FGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGKSFECPVCSQYFE 75
>sp|P29505|COX5_DICDI Cytochrome c oxidase subunit 5 OS=Dictyostelium discoideum GN=cxeA
PE=1 SV=3
Length = 120
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 67 DPFNVKIRKRGLGTKTQPTEVPSAFEARIVGCI-CEEESPSINWMWLYEGKPKRCM-CGH 124
+ F ++ GT P V S F +RIV C + E I + + E KP C+ CG
Sbjct: 45 EDFGHEVLTGAFGTLKSPVIVESIFHSRIVACEGGDGEEHDILFHTVAEKKPTICLDCGQ 104
Query: 125 WFKL 128
FKL
Sbjct: 105 VFKL 108
>sp|C0ZWZ6|SECA_RHOE4 Protein translocase subunit SecA OS=Rhodococcus erythropolis
(strain PR4 / NBRC 100887) GN=secA PE=3 SV=1
Length = 947
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 14 TRYLARSVTATGNSFSTCAQRWNKNDLDELPDP-----LDLATGLEKRELLAELAGDPDP 68
+ YL++ T G + + ++++ + + + + +AT + R L G+PD
Sbjct: 444 SEYLSKQFTKRGVAHNVLNAKFHEKEATIIAEAGRSGAVTVATNMAGRGTDVVLGGNPDI 503
Query: 69 F-NVKIRKRGLGTKTQPTEVPSAFEA 93
++ +RK+GL T P E +A++A
Sbjct: 504 IADIALRKKGLDPVTTPDEYEAAWDA 529
>sp|Q6UY09|CEA20_HUMAN Carcinoembryonic antigen-related cell adhesion molecule 20 OS=Homo
sapiens GN=CEACAM20 PE=2 SV=1
Length = 585
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 73 IRKRGLGTKTQPTEVPSAFE----ARIVGCICEEESPSINWMWLYEGKP 117
++ R L T T P VPS+ AR V C+ + S+N W G+P
Sbjct: 245 LKVRVLETLTMPQVVPSSLNLVENARSVDLTCQTVNQSVNVQWFLSGQP 293
>sp|P24487|ATPA_SCHPO ATP synthase subunit alpha, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=atp1 PE=3 SV=1
Length = 536
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 14/24 (58%)
Query: 75 KRGLGTKTQPTEVPSAFEARIVGC 98
KRG K PTEVPS E RI G
Sbjct: 24 KRGYAEKAAPTEVPSILEERIRGA 47
>sp|Q2JM09|DER_SYNJB GTPase Der OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=der
PE=3 SV=1
Length = 459
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 57 ELLAELAGDPDPFNVKIRKRGLGTKTQPTEVPSAFEARIVGCICEEESPSINWMWLYEGK 116
E+ AE AG+PDP V I R K+ E IV I +I+ + +EG+
Sbjct: 167 EVTAEAAGEPDPIAVSIVGRPNVGKSSLLNRLVGSERAIVSPISGTTRDAIDTVVTWEGQ 226
Query: 117 PKR 119
P R
Sbjct: 227 PYR 229
>sp|P28685|CNTN2_CHICK Contactin-2 OS=Gallus gallus GN=CNTN2 PE=1 SV=1
Length = 1036
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 40 LDELPDPLDLATGLEKRELLAELAGDPDPFNVKIRKRGLGTKTQPTEVPSAFEA 93
LD+ P LD + G +R + E GD N +++ G T T T V S E+
Sbjct: 541 LDDFPIDLDKSEGHYRRASVKEAVGDLAIVNAQLKHSGRYTCTAQTVVDSTSES 594
>sp|B2SHI9|Y3616_XANOP UPF0502 protein PXO_03616 OS=Xanthomonas oryzae pv. oryzae (strain
PXO99A) GN=PXO_03616 PE=3 SV=2
Length = 221
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 80 TKTQPTEVPSAFEARIVGCICEEESPS 106
T+T PT V +AR++GC+ E+E+ +
Sbjct: 2 TETSPTPVLDTAQARVLGCLIEKEATT 28
>sp|Q5H6C1|Y245_XANOR UPF0502 protein XOO0245 OS=Xanthomonas oryzae pv. oryzae (strain
KACC10331 / KXO85) GN=XOO0245 PE=3 SV=2
Length = 221
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 80 TKTQPTEVPSAFEARIVGCICEEESPS 106
T+T PT V +AR++GC+ E+E+ +
Sbjct: 2 TETSPTPVLDTAQARVLGCLIEKEATT 28
>sp|Q2P8Z8|Y224_XANOM UPF0502 protein XOO0224 OS=Xanthomonas oryzae pv. oryzae (strain
MAFF 311018) GN=XOO0224 PE=3 SV=1
Length = 221
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 80 TKTQPTEVPSAFEARIVGCICEEESPS 106
T+T PT V +AR++GC+ E+E+ +
Sbjct: 2 TETSPTPVLDTAQARVLGCLIEKEATT 28
>sp|Q6P286|DHTK1_XENLA Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1,
mitochondrial OS=Xenopus laevis GN=dhtkd1 PE=2 SV=1
Length = 927
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 14/99 (14%)
Query: 31 CAQRWNKNDLDELPDPLDLATGLEKRELLAELAGDPDPFNVKIRKRGLGTKTQPTEVPSA 90
C ++W N+LDE T +++ PD ++ ++ GL T+ + TE+ +
Sbjct: 437 CYRQWGHNELDE-----PFFTNPSMYKIIRSRKSIPDVYSERLIAEGLMTEEEATEIRTT 491
Query: 91 FEARIVGCICEEESPSINWMWLYEGKPKRCMCGHWFKLV 129
+ ++ + ++ M LY P + HW +++
Sbjct: 492 YYSKF--------NDHLSNMTLY-SPPSTNLQAHWREMI 521
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,789,037
Number of Sequences: 539616
Number of extensions: 2296667
Number of successful extensions: 4458
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4433
Number of HSP's gapped (non-prelim): 30
length of query: 134
length of database: 191,569,459
effective HSP length: 100
effective length of query: 34
effective length of database: 137,607,859
effective search space: 4678667206
effective search space used: 4678667206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)