RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2945
         (134 letters)



>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 98

 Score =  130 bits (329), Expect = 3e-41
 Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 2/90 (2%)

Query: 41  DELPDPLDLATGLEKRELLAELAGDPDPFNVKIRKRGLGTKTQPTEVPSAFEARIVGCIC 100
             +P   + ATGLE+  +LA   G  DP+N+   K   GTK  P  VPS    RIVGCIC
Sbjct: 4   GGVPTDEEQATGLEREVMLAARKGQ-DPYNILAPKATSGTKEDPNLVPSITNKRIVGCIC 62

Query: 101 EEESPSINWMWLYEGKPKRCM-CGHWFKLV 129
           EE++ ++ W WL++G+ +RC  CG  +KLV
Sbjct: 63  EEDNSTVIWFWLHKGEAQRCPSCGTHYKLV 92


>d1z4ra1 d.108.1.1 (A:497-658) Catalytic domain of GCN5 histone
           acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 162

 Score = 25.0 bits (54), Expect = 2.8
 Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 30/106 (28%)

Query: 37  KNDLDELPDPLDLA--TGLEK----------RELLAELAGDPDPFNVKIRKRGLGTKTQP 84
            N L    +   L    GL+           +E +A L  DP    + + K G       
Sbjct: 9   GNSLTPKANRRVLLWLVGLQNVFSHQLPRMPKEYIARLVFDPKHKTLALIKDG------- 61

Query: 85  TEVPSAFEARIVGCICEEESPSINWMWLYEG--KPKRCMCGHWFKL 128
                    R++G IC    P+  +  +          + G+   L
Sbjct: 62  ---------RVIGGICFRMFPTQGFTEIVFCAVTSNEQVKGYGTHL 98


>d2gf5a2 a.77.1.4 (A:2-83) FADD (Mort1) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 82

 Score = 23.4 bits (51), Expect = 4.9
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 31 CAQRWNKNDLDELPDPLDLATGLEKRELLAE 61
          C  R  K  L+ +   LDL + L ++  L  
Sbjct: 26 CLGRVGKRKLERVQSGLDLFSMLLEQNDLEP 56


>d2fp1a1 a.130.1.4 (A:35-199) Secreted chorismate mutase
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 165

 Score = 23.3 bits (50), Expect = 9.4
 Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 5/40 (12%)

Query: 33  QRWNKNDLDELPDPLDLATGLEK-----RELLAELAGDPD 67
             W  N     P+P DL+            +L+++     
Sbjct: 80  SDWKLNPASAPPEPPDLSASRSAIDSLNNRMLSQIWSHWS 119


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.439 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 549,652
Number of extensions: 23840
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 6
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)