Query psy2946
Match_columns 455
No_of_seqs 423 out of 3479
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 21:37:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2749|consensus 100.0 6E-93 1.3E-97 679.6 40.7 410 9-422 2-415 (415)
2 COG5623 CLP1 Predicted GTPase 100.0 1.6E-64 3.4E-69 473.6 32.5 401 9-422 2-424 (424)
3 COG1341 Predicted GTPase or GT 100.0 4.3E-30 9.3E-35 254.1 30.6 347 25-422 8-385 (398)
4 PF06807 Clp1: Pre-mRNA cleava 100.0 4.4E-30 9.4E-35 238.8 14.7 185 231-423 1-195 (195)
5 COG1126 GlnQ ABC-type polar am 99.9 4E-27 8.7E-32 214.2 1.5 150 86-261 2-164 (240)
6 COG1117 PstB ABC-type phosphat 99.9 4E-25 8.7E-30 200.4 5.4 194 87-307 8-224 (253)
7 COG1127 Ttg2A ABC-type transpo 99.9 1.1E-25 2.4E-30 207.9 1.7 204 84-309 6-250 (263)
8 COG3839 MalK ABC-type sugar tr 99.9 1.3E-25 2.8E-30 221.3 -1.1 148 87-262 4-162 (338)
9 COG3842 PotA ABC-type spermidi 99.9 4.9E-25 1.1E-29 218.4 1.9 148 87-262 6-165 (352)
10 COG1125 OpuBA ABC-type proline 99.9 1.5E-24 3.3E-29 201.4 4.9 152 86-261 1-163 (309)
11 COG1116 TauB ABC-type nitrate/ 99.9 1.2E-24 2.7E-29 203.3 1.4 126 108-262 27-159 (248)
12 COG1118 CysA ABC-type sulfate/ 99.9 1.3E-23 2.9E-28 200.1 5.6 150 86-261 2-165 (345)
13 COG2884 FtsE Predicted ATPase 99.9 1.3E-23 2.8E-28 187.3 3.5 151 86-261 1-165 (223)
14 COG1136 SalX ABC-type antimicr 99.9 1.1E-23 2.4E-28 196.5 -1.6 131 108-261 29-170 (226)
15 COG1135 AbcC ABC-type metal io 99.9 1.6E-22 3.4E-27 193.2 4.8 130 108-261 30-169 (339)
16 COG4555 NatA ABC-type Na+ tran 99.9 8.3E-23 1.8E-27 183.8 1.3 150 86-261 1-161 (245)
17 COG3840 ThiQ ABC-type thiamine 99.8 2.5E-22 5.5E-27 177.9 2.4 129 108-262 23-158 (231)
18 COG1124 DppF ABC-type dipeptid 99.8 1.1E-22 2.3E-27 188.9 -1.1 133 108-261 31-169 (252)
19 COG0410 LivF ABC-type branched 99.8 1.4E-22 3E-27 186.8 -0.8 155 85-261 2-164 (237)
20 COG3638 ABC-type phosphate/pho 99.8 2.8E-22 6.1E-27 184.9 1.0 151 86-261 3-175 (258)
21 COG1137 YhbG ABC-type (unclass 99.8 5.2E-23 1.1E-27 184.8 -3.8 152 85-262 3-168 (243)
22 COG4525 TauB ABC-type taurine 99.8 2.1E-21 4.7E-26 173.8 5.8 125 108-261 29-160 (259)
23 COG1120 FepC ABC-type cobalami 99.8 6.6E-22 1.4E-26 188.2 -0.4 130 108-261 26-166 (258)
24 COG1131 CcmA ABC-type multidru 99.8 1E-21 2.2E-26 193.4 0.7 129 108-261 29-164 (293)
25 KOG2750|consensus 99.8 6.1E-20 1.3E-24 186.2 13.1 314 108-442 205-549 (587)
26 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 8.5E-22 1.8E-26 186.6 -0.6 129 108-261 28-167 (254)
27 PRK11432 fbpC ferric transport 99.8 6.2E-22 1.3E-26 199.6 -3.7 128 108-261 30-164 (351)
28 TIGR03265 PhnT2 putative 2-ami 99.8 7.6E-22 1.6E-26 199.2 -3.7 128 108-261 28-162 (353)
29 PRK11650 ugpC glycerol-3-phosp 99.8 6.2E-22 1.3E-26 200.1 -4.4 128 108-261 28-162 (356)
30 PRK09452 potA putrescine/sperm 99.8 1.1E-21 2.5E-26 199.0 -4.0 128 108-261 38-172 (375)
31 COG1122 CbiO ABC-type cobalt t 99.8 6.8E-22 1.5E-26 187.5 -5.3 132 108-262 28-167 (235)
32 PRK11607 potG putrescine trans 99.8 1.3E-21 2.7E-26 199.0 -3.8 128 108-261 43-177 (377)
33 TIGR00960 3a0501s02 Type II (G 99.8 1.2E-21 2.6E-26 184.9 -4.2 130 108-261 27-166 (216)
34 COG0411 LivG ABC-type branched 99.8 4.8E-21 1E-25 178.0 -0.5 151 85-261 3-177 (250)
35 COG2274 SunT ABC-type bacterio 99.8 1.2E-20 2.5E-25 204.2 0.9 162 67-262 471-638 (709)
36 PRK13537 nodulation ABC transp 99.8 2.3E-21 5E-26 192.4 -4.3 129 108-261 31-166 (306)
37 TIGR02314 ABC_MetN D-methionin 99.8 2.3E-21 4.9E-26 194.6 -4.6 130 108-261 29-168 (343)
38 TIGR03258 PhnT 2-aminoethylpho 99.8 3.4E-21 7.4E-26 194.8 -3.6 128 108-261 29-165 (362)
39 COG4598 HisP ABC-type histidin 99.8 1.4E-19 3E-24 160.2 6.2 151 85-261 5-180 (256)
40 COG4181 Predicted ABC-type tra 99.8 1.3E-19 2.9E-24 159.1 5.4 152 86-261 6-174 (228)
41 PRK13536 nodulation factor exp 99.8 5.5E-21 1.2E-25 192.0 -4.2 150 85-261 40-200 (340)
42 PRK10851 sulfate/thiosulfate t 99.8 1.6E-20 3.5E-25 189.5 -0.8 128 108-261 26-164 (353)
43 TIGR02868 CydC thiol reductant 99.8 2.9E-20 6.3E-25 198.3 0.9 161 67-262 334-499 (529)
44 PRK11629 lolD lipoprotein tran 99.8 6.4E-21 1.4E-25 182.1 -3.8 130 108-261 33-173 (233)
45 cd03294 ABC_Pro_Gly_Bertaine T 99.8 3E-20 6.5E-25 181.3 0.6 148 88-261 26-188 (269)
46 cd03261 ABC_Org_Solvent_Resist 99.8 2.3E-20 5E-25 178.4 -0.3 130 108-261 24-164 (235)
47 PRK11153 metN DL-methionine tr 99.8 6.3E-21 1.4E-25 192.2 -4.5 130 108-261 29-168 (343)
48 cd03263 ABC_subfamily_A The AB 99.8 9.1E-21 2E-25 179.3 -3.2 129 108-261 26-161 (220)
49 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 9.3E-21 2E-25 179.0 -3.3 130 108-261 28-168 (218)
50 PRK11000 maltose/maltodextrin 99.8 8.8E-21 1.9E-25 192.8 -3.7 128 108-261 27-161 (369)
51 cd03266 ABC_NatA_sodium_export 99.8 1E-20 2.2E-25 178.8 -4.0 129 108-261 29-164 (218)
52 cd03258 ABC_MetN_methionine_tr 99.8 2.3E-20 4.9E-25 178.2 -1.6 130 108-261 29-168 (233)
53 TIGR01288 nodI ATP-binding ABC 99.8 1.1E-20 2.4E-25 187.4 -3.9 129 108-261 28-163 (303)
54 cd03259 ABC_Carb_Solutes_like 99.8 2E-20 4.3E-25 176.2 -2.3 128 108-261 24-158 (213)
55 TIGR01186 proV glycine betaine 99.8 7.7E-20 1.7E-24 184.6 1.8 130 108-261 17-157 (363)
56 TIGR02673 FtsE cell division A 99.8 1.7E-20 3.7E-25 176.7 -2.9 130 108-261 26-165 (214)
57 KOG0058|consensus 99.8 2.2E-19 4.7E-24 188.5 4.8 162 67-261 465-632 (716)
58 TIGR02211 LolD_lipo_ex lipopro 99.8 1.5E-20 3.3E-25 178.0 -3.6 130 108-261 29-169 (221)
59 PRK10247 putative ABC transpor 99.8 8.2E-20 1.8E-24 173.6 1.1 130 108-261 31-165 (225)
60 TIGR02315 ABC_phnC phosphonate 99.8 9.6E-20 2.1E-24 175.0 1.3 130 108-261 26-173 (243)
61 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 8E-20 1.7E-24 200.7 0.7 163 67-262 451-617 (686)
62 cd03265 ABC_DrrA DrrA is the A 99.8 1E-19 2.2E-24 172.3 1.2 129 108-261 24-159 (220)
63 PRK09536 btuD corrinoid ABC tr 99.8 4.4E-20 9.5E-25 188.7 -1.4 130 108-261 27-167 (402)
64 cd03218 ABC_YhbG The ABC trans 99.8 3E-20 6.6E-25 177.2 -2.7 130 108-261 24-161 (232)
65 PRK13632 cbiO cobalt transport 99.8 2E-20 4.3E-25 182.7 -4.2 131 108-261 33-170 (271)
66 PRK10908 cell division protein 99.8 2.3E-20 5E-25 176.9 -3.7 130 108-261 26-165 (222)
67 COG3845 ABC-type uncharacteriz 99.8 2.9E-19 6.3E-24 180.3 4.0 148 88-261 6-168 (501)
68 cd03225 ABC_cobalt_CbiO_domain 99.8 3E-20 6.5E-25 174.6 -3.0 131 108-261 25-162 (211)
69 cd03257 ABC_NikE_OppD_transpor 99.8 5.9E-20 1.3E-24 174.6 -1.1 133 108-261 29-173 (228)
70 PRK15079 oligopeptide ABC tran 99.8 3E-20 6.5E-25 186.1 -3.3 133 108-261 45-189 (331)
71 cd03295 ABC_OpuCA_Osmoprotecti 99.8 4E-20 8.6E-25 177.6 -2.4 132 108-261 25-163 (242)
72 PRK10584 putative ABC transpor 99.8 2.8E-20 6E-25 177.1 -3.6 130 108-261 34-174 (228)
73 PRK10575 iron-hydroxamate tran 99.8 5.2E-20 1.1E-24 179.3 -1.7 130 108-261 35-175 (265)
74 cd03296 ABC_CysA_sulfate_impor 99.8 3.2E-20 6.9E-25 177.9 -3.3 128 108-261 26-164 (239)
75 cd03301 ABC_MalK_N The N-termi 99.8 3.7E-20 8.1E-25 174.3 -2.8 128 108-261 24-158 (213)
76 COG4988 CydD ABC-type transpor 99.8 3.6E-19 7.8E-24 183.5 4.1 137 108-262 345-485 (559)
77 PRK14247 phosphate ABC transpo 99.8 1.1E-19 2.4E-24 175.4 0.3 139 108-261 27-174 (250)
78 PRK13650 cbiO cobalt transport 99.8 2.1E-20 4.5E-25 183.4 -5.0 131 108-261 31-168 (279)
79 PRK10070 glycine betaine trans 99.7 2.1E-19 4.5E-24 183.6 1.7 130 108-261 52-192 (400)
80 cd03219 ABC_Mj1267_LivG_branch 99.7 6E-20 1.3E-24 175.6 -2.3 130 108-261 24-171 (236)
81 PRK13635 cbiO cobalt transport 99.7 2.6E-20 5.6E-25 182.7 -5.0 131 108-261 31-168 (279)
82 PRK13538 cytochrome c biogenes 99.7 9.5E-20 2.1E-24 170.5 -1.2 129 108-261 25-157 (204)
83 PRK11247 ssuB aliphatic sulfon 99.7 1.1E-19 2.4E-24 176.0 -0.9 125 108-261 36-161 (257)
84 cd03268 ABC_BcrA_bacitracin_re 99.7 4.5E-19 9.9E-24 166.3 3.3 128 108-261 24-154 (208)
85 TIGR03864 PQQ_ABC_ATP ABC tran 99.7 4.3E-20 9.3E-25 176.7 -3.8 129 108-261 25-160 (236)
86 COG4148 ModC ABC-type molybdat 99.7 4E-19 8.6E-24 167.3 2.6 128 111-262 25-157 (352)
87 PRK13648 cbiO cobalt transport 99.7 4.6E-20 9.9E-25 180.0 -3.9 131 108-261 33-170 (269)
88 PRK10895 lipopolysaccharide AB 99.7 1.2E-19 2.6E-24 174.2 -1.1 130 108-261 27-165 (241)
89 TIGR03522 GldA_ABC_ATP gliding 99.7 3.4E-20 7.5E-25 183.7 -5.1 129 108-261 26-161 (301)
90 PRK14267 phosphate ABC transpo 99.7 2.2E-19 4.7E-24 173.7 0.6 139 108-261 28-177 (253)
91 cd03224 ABC_TM1139_LivF_branch 99.7 7.6E-20 1.7E-24 173.2 -2.6 131 108-261 24-160 (222)
92 TIGR03411 urea_trans_UrtD urea 99.7 3.3E-19 7.1E-24 171.2 1.8 130 108-261 26-171 (242)
93 PRK11248 tauB taurine transpor 99.7 6E-20 1.3E-24 177.8 -3.4 125 108-261 25-156 (255)
94 TIGR01188 drrA daunorubicin re 99.7 3.4E-19 7.3E-24 176.8 1.9 129 108-261 17-152 (302)
95 COG4175 ProV ABC-type proline/ 99.7 4.7E-19 1E-23 169.5 2.7 130 108-261 52-192 (386)
96 TIGR03796 NHPM_micro_ABC1 NHPM 99.7 1.8E-19 4E-24 198.6 -0.4 163 67-262 477-644 (710)
97 PRK13647 cbiO cobalt transport 99.7 1.3E-19 2.9E-24 177.2 -1.4 131 108-261 29-166 (274)
98 cd03260 ABC_PstB_phosphate_tra 99.7 1.6E-19 3.5E-24 171.6 -0.8 129 108-261 24-169 (227)
99 PRK13543 cytochrome c biogenes 99.7 4.3E-19 9.2E-24 167.4 2.1 127 108-261 35-165 (214)
100 COG1123 ATPase components of v 99.7 3.4E-19 7.4E-24 184.2 1.4 157 83-261 277-457 (539)
101 PRK11831 putative ABC transpor 99.7 2.1E-19 4.6E-24 175.3 -0.1 130 108-261 31-171 (269)
102 COG4619 ABC-type uncharacteriz 99.7 8.8E-19 1.9E-23 153.5 3.8 131 108-262 27-162 (223)
103 PRK11174 cysteine/glutathione 99.7 2.2E-19 4.8E-24 193.9 -0.1 135 108-261 374-513 (588)
104 cd03215 ABC_Carb_Monos_II This 99.7 3.9E-19 8.4E-24 163.4 1.5 107 108-261 24-132 (182)
105 PRK11160 cysteine/glutathione 99.7 3.9E-19 8.4E-24 191.3 1.8 161 67-261 338-503 (574)
106 PRK13640 cbiO cobalt transport 99.7 5.2E-20 1.1E-24 180.8 -4.6 131 108-261 31-171 (282)
107 cd03262 ABC_HisP_GlnQ_permease 99.7 1.2E-18 2.6E-23 163.9 4.8 130 108-261 24-163 (213)
108 PRK13540 cytochrome c biogenes 99.7 1.8E-19 3.9E-24 168.1 -0.9 129 108-261 25-155 (200)
109 cd03244 ABCC_MRP_domain2 Domai 99.7 4E-19 8.6E-24 168.2 1.1 136 108-261 28-167 (221)
110 PRK11264 putative amino-acid A 99.7 4.1E-19 8.8E-24 171.4 1.2 130 108-261 27-172 (250)
111 COG1129 MglA ABC-type sugar tr 99.7 5.5E-19 1.2E-23 181.5 2.0 152 84-261 6-173 (500)
112 PRK13637 cbiO cobalt transport 99.7 8.4E-20 1.8E-24 179.8 -3.8 133 108-261 31-172 (287)
113 PRK09493 glnQ glutamine ABC tr 99.7 2.3E-19 5E-24 172.1 -0.7 130 108-261 25-164 (240)
114 PRK14242 phosphate transporter 99.7 3.1E-19 6.7E-24 172.5 0.2 138 108-261 30-177 (253)
115 PRK11176 lipid transporter ATP 99.7 4.3E-19 9.4E-24 191.4 1.3 162 67-261 341-508 (582)
116 COG4167 SapF ABC-type antimicr 99.7 1.3E-18 2.9E-23 154.3 4.0 156 85-261 3-177 (267)
117 cd03264 ABC_drug_resistance_li 99.7 5E-19 1.1E-23 166.4 1.4 128 108-261 24-158 (211)
118 cd03292 ABC_FtsE_transporter F 99.7 4.8E-19 1.1E-23 166.7 1.3 130 108-261 25-164 (214)
119 PRK13643 cbiO cobalt transport 99.7 6.5E-20 1.4E-24 180.7 -5.0 132 108-261 30-172 (288)
120 cd03231 ABC_CcmA_heme_exporter 99.7 2.7E-19 5.9E-24 167.1 -0.5 129 108-261 24-153 (201)
121 PRK13631 cbiO cobalt transport 99.7 7.6E-20 1.6E-24 182.5 -4.6 132 108-261 50-204 (320)
122 TIGR02203 MsbA_lipidA lipid A 99.7 4.6E-19 1E-23 190.8 1.1 162 67-262 330-498 (571)
123 PRK10253 iron-enterobactin tra 99.7 1.6E-19 3.4E-24 175.9 -2.4 130 108-261 31-171 (265)
124 KOG0057|consensus 99.7 1.1E-19 2.4E-24 184.8 -3.6 135 108-261 376-515 (591)
125 PRK14269 phosphate ABC transpo 99.7 4.5E-19 9.8E-24 170.7 0.5 136 108-261 26-170 (246)
126 TIGR03410 urea_trans_UrtE urea 99.7 2.7E-19 5.9E-24 170.5 -1.0 131 108-261 24-159 (230)
127 PRK13548 hmuV hemin importer A 99.7 3.4E-19 7.3E-24 172.9 -0.5 130 108-261 26-168 (258)
128 cd03293 ABC_NrtD_SsuB_transpor 99.7 1E-18 2.2E-23 165.4 2.9 125 108-261 28-159 (220)
129 PRK13652 cbiO cobalt transport 99.7 1.3E-19 2.7E-24 177.7 -3.6 131 108-261 28-165 (277)
130 PRK15112 antimicrobial peptide 99.7 1.8E-19 3.9E-24 175.7 -2.5 133 108-261 37-177 (267)
131 TIGR01193 bacteriocin_ABC ABC- 99.7 3.8E-19 8.3E-24 196.0 -0.3 162 67-262 473-640 (708)
132 PRK11308 dppF dipeptide transp 99.7 1.6E-19 3.5E-24 180.6 -3.0 133 108-261 39-182 (327)
133 cd03256 ABC_PhnC_transporter A 99.7 2.5E-18 5.4E-23 164.9 5.2 130 108-261 25-172 (241)
134 TIGR03375 type_I_sec_LssB type 99.7 4.3E-19 9.3E-24 195.1 -0.1 162 67-261 463-629 (694)
135 TIGR02857 CydD thiol reductant 99.7 7.6E-19 1.7E-23 187.4 1.8 162 67-261 320-486 (529)
136 cd03233 ABC_PDR_domain1 The pl 99.7 1.3E-18 2.9E-23 162.6 3.0 116 108-261 31-146 (202)
137 PRK13539 cytochrome c biogenes 99.7 3.8E-19 8.1E-24 166.9 -0.8 127 108-261 26-155 (207)
138 TIGR00958 3a01208 Conjugate Tr 99.7 1.4E-18 2.9E-23 191.4 3.4 163 67-262 478-646 (711)
139 COG0444 DppD ABC-type dipeptid 99.7 3.3E-18 7E-23 165.6 5.6 140 108-261 29-181 (316)
140 PRK14268 phosphate ABC transpo 99.7 6E-19 1.3E-23 171.1 0.5 139 108-262 36-183 (258)
141 PRK13644 cbiO cobalt transport 99.7 1.1E-19 2.4E-24 177.7 -4.7 131 108-261 26-164 (274)
142 PRK10790 putative multidrug tr 99.7 6.5E-19 1.4E-23 190.4 0.7 162 67-262 340-505 (592)
143 PRK14250 phosphate ABC transpo 99.7 2.5E-19 5.5E-24 172.0 -2.2 130 108-261 27-159 (241)
144 PRK13642 cbiO cobalt transport 99.7 1.3E-19 2.9E-24 177.5 -4.3 131 108-261 31-168 (277)
145 cd03369 ABCC_NFT1 Domain 2 of 99.7 1.2E-18 2.6E-23 163.4 2.3 122 108-261 32-153 (207)
146 cd03246 ABCC_Protease_Secretio 99.7 1.2E-18 2.5E-23 158.9 2.1 99 108-261 26-124 (173)
147 PRK11231 fecE iron-dicitrate t 99.7 2.4E-19 5.3E-24 173.5 -2.5 130 108-261 26-166 (255)
148 PRK13633 cobalt transporter AT 99.7 1.5E-19 3.3E-24 177.3 -4.0 131 108-261 34-172 (280)
149 cd03235 ABC_Metallic_Cations A 99.7 4.9E-19 1.1E-23 166.7 -0.5 125 108-261 23-160 (213)
150 PRK11300 livG leucine/isoleuci 99.7 4.6E-19 1E-23 171.5 -0.6 130 108-261 29-181 (255)
151 PRK11614 livF leucine/isoleuci 99.7 7.9E-19 1.7E-23 168.1 0.8 130 108-261 29-165 (237)
152 PRK13638 cbiO cobalt transport 99.7 1.7E-19 3.7E-24 176.2 -3.9 131 108-261 25-164 (271)
153 PRK11144 modC molybdate transp 99.7 4.3E-18 9.4E-23 172.2 6.1 130 108-261 22-156 (352)
154 cd03298 ABC_ThiQ_thiamine_tran 99.7 3.4E-18 7.3E-23 160.7 4.9 129 108-262 22-157 (211)
155 KOG0055|consensus 99.7 5.5E-19 1.2E-23 195.2 -0.6 136 108-261 377-517 (1228)
156 PRK09984 phosphonate/organopho 99.7 5.6E-19 1.2E-23 171.7 -0.5 133 108-261 28-180 (262)
157 PRK11022 dppD dipeptide transp 99.7 3E-19 6.4E-24 178.7 -2.5 139 108-261 31-181 (326)
158 PRK10744 pstB phosphate transp 99.7 4.2E-19 9E-24 172.4 -1.5 138 108-261 37-184 (260)
159 PRK14246 phosphate ABC transpo 99.7 1.2E-18 2.7E-23 168.8 1.8 156 84-261 8-181 (257)
160 TIGR01166 cbiO cobalt transpor 99.7 1.3E-18 2.9E-23 160.9 1.8 131 108-261 16-155 (190)
161 PRK11124 artP arginine transpo 99.7 1.9E-19 4.1E-24 172.9 -3.9 130 108-261 26-169 (242)
162 TIGR00972 3a0107s01c2 phosphat 99.7 6.6E-19 1.4E-23 169.7 -0.3 138 108-261 25-172 (247)
163 PRK14259 phosphate ABC transpo 99.7 4E-19 8.7E-24 173.4 -1.9 138 108-261 37-182 (269)
164 PRK14241 phosphate transporter 99.7 8.3E-19 1.8E-23 170.1 0.3 139 108-261 28-176 (258)
165 PRK10619 histidine/lysine/argi 99.7 6.9E-19 1.5E-23 170.6 -0.3 131 108-261 29-180 (257)
166 PRK14274 phosphate ABC transpo 99.7 8E-19 1.7E-23 170.3 0.1 137 108-261 36-183 (259)
167 COG1132 MdlB ABC-type multidru 99.7 3.3E-18 7.1E-23 184.0 4.8 137 108-262 353-494 (567)
168 TIGR03415 ABC_choXWV_ATP choli 99.7 7.8E-19 1.7E-23 178.2 -0.0 130 108-261 48-192 (382)
169 PRK10762 D-ribose transporter 99.7 7.4E-19 1.6E-23 186.2 -0.2 130 108-261 28-169 (501)
170 PRK11701 phnK phosphonate C-P 99.7 6.4E-19 1.4E-23 170.9 -0.7 133 108-261 30-179 (258)
171 COG4152 ABC-type uncharacteriz 99.7 2.3E-18 5.1E-23 159.4 3.0 146 86-261 2-158 (300)
172 cd03297 ABC_ModC_molybdenum_tr 99.7 1.2E-18 2.5E-23 164.3 1.0 129 108-261 22-159 (214)
173 PRK14273 phosphate ABC transpo 99.7 8.7E-19 1.9E-23 169.5 0.2 138 108-261 31-178 (254)
174 TIGR02142 modC_ABC molybdenum 99.7 5.9E-18 1.3E-22 171.4 6.2 130 108-261 21-159 (354)
175 PRK15093 antimicrobial peptide 99.7 2.5E-18 5.5E-23 172.4 3.5 139 108-261 31-186 (330)
176 TIGR01189 ccmA heme ABC export 99.7 5.9E-18 1.3E-22 157.6 5.6 129 108-261 24-155 (198)
177 PRK13646 cbiO cobalt transport 99.7 9.4E-19 2E-23 172.3 0.2 132 108-261 31-173 (286)
178 PRK13634 cbiO cobalt transport 99.7 8E-19 1.7E-23 173.1 -0.3 132 108-261 31-173 (290)
179 PRK13641 cbiO cobalt transport 99.7 1.7E-19 3.6E-24 177.7 -5.2 132 108-261 31-173 (287)
180 TIGR02769 nickel_nikE nickel i 99.7 2.9E-18 6.4E-23 166.9 3.6 133 108-261 35-178 (265)
181 cd03226 ABC_cobalt_CbiO_domain 99.7 3.1E-18 6.8E-23 160.3 3.6 128 108-261 24-154 (205)
182 cd03269 ABC_putative_ATPase Th 99.7 1.3E-18 2.9E-23 163.4 1.1 126 108-261 24-156 (210)
183 TIGR03608 L_ocin_972_ABC putat 99.7 1.7E-18 3.7E-23 162.0 1.7 130 108-261 22-162 (206)
184 cd03251 ABCC_MsbA MsbA is an e 99.7 8.1E-19 1.7E-23 167.6 -0.5 134 108-261 26-166 (234)
185 COG4161 ArtP ABC-type arginine 99.7 5E-18 1.1E-22 147.8 4.4 148 89-262 5-170 (242)
186 cd03289 ABCC_CFTR2 The CFTR su 99.7 2.3E-18 5.1E-23 168.1 2.7 135 108-261 28-166 (275)
187 PRK14262 phosphate ABC transpo 99.7 9.4E-19 2E-23 168.9 -0.2 139 108-262 27-175 (250)
188 TIGR01978 sufC FeS assembly AT 99.7 7.4E-19 1.6E-23 168.7 -1.0 131 108-261 24-172 (243)
189 PRK10771 thiQ thiamine transpo 99.7 2.2E-19 4.7E-24 171.4 -4.7 128 108-261 23-157 (232)
190 cd03213 ABCG_EPDR ABCG transpo 99.7 5E-18 1.1E-22 157.6 4.5 105 108-261 33-139 (194)
191 cd03250 ABCC_MRP_domain1 Domai 99.7 1.5E-18 3.2E-23 162.4 0.8 123 108-261 29-155 (204)
192 cd03228 ABCC_MRP_Like The MRP 99.7 4.6E-19 1E-23 161.2 -2.7 99 108-261 26-124 (171)
193 PRK14270 phosphate ABC transpo 99.7 1.1E-18 2.4E-23 168.6 -0.3 139 108-262 28-176 (251)
194 PRK13657 cyclic beta-1,2-gluca 99.7 3.6E-18 7.7E-23 184.5 3.7 161 67-261 334-499 (588)
195 TIGR01277 thiQ thiamine ABC tr 99.7 9.8E-18 2.1E-22 157.9 6.2 128 108-261 22-156 (213)
196 cd03252 ABCC_Hemolysin The ABC 99.7 2.4E-18 5.1E-23 164.7 1.9 136 108-261 26-166 (237)
197 PRK14253 phosphate ABC transpo 99.7 1.3E-18 2.8E-23 167.8 0.1 138 108-261 27-173 (249)
198 PRK14235 phosphate transporter 99.7 8.7E-19 1.9E-23 170.8 -1.1 138 108-261 43-191 (267)
199 TIGR01842 type_I_sec_PrtD type 99.7 2E-18 4.2E-23 184.8 1.3 162 67-261 316-482 (544)
200 PRK13636 cbiO cobalt transport 99.7 3.5E-19 7.6E-24 175.0 -4.1 131 108-261 30-169 (283)
201 PRK10419 nikE nickel transport 99.7 9.8E-19 2.1E-23 170.5 -1.1 133 108-261 36-179 (268)
202 PRK14248 phosphate ABC transpo 99.7 1.3E-18 2.8E-23 169.7 -0.4 139 108-262 45-193 (268)
203 PRK14243 phosphate transporter 99.7 1.1E-18 2.4E-23 169.8 -1.0 138 108-261 34-179 (264)
204 PRK13549 xylose transporter AT 99.7 1.2E-18 2.6E-23 184.8 -0.9 132 108-261 29-171 (506)
205 PRK14245 phosphate ABC transpo 99.7 1.4E-18 3E-23 167.7 -0.4 139 108-262 27-175 (250)
206 COG4987 CydC ABC-type transpor 99.7 2.2E-18 4.8E-23 175.3 1.0 135 108-261 362-502 (573)
207 cd03234 ABCG_White The White s 99.7 2.2E-18 4.7E-23 163.9 0.9 127 108-261 31-171 (226)
208 PRK14239 phosphate transporter 99.7 1.7E-18 3.7E-23 167.2 0.1 138 108-261 29-176 (252)
209 PRK14261 phosphate ABC transpo 99.7 1.5E-18 3.2E-23 167.8 -0.4 138 108-261 30-177 (253)
210 PRK14254 phosphate ABC transpo 99.7 1.5E-18 3.2E-23 170.8 -0.5 138 108-261 63-208 (285)
211 cd03230 ABC_DR_subfamily_A Thi 99.7 6E-18 1.3E-22 154.2 3.5 100 108-261 24-123 (173)
212 cd03232 ABC_PDR_domain2 The pl 99.7 6.3E-18 1.4E-22 156.7 3.6 106 108-261 31-136 (192)
213 cd03247 ABCC_cytochrome_bd The 99.7 3E-18 6.6E-23 156.9 1.4 101 108-261 26-126 (178)
214 PRK14272 phosphate ABC transpo 99.7 1.7E-18 3.7E-23 167.2 -0.4 139 108-261 28-176 (252)
215 PRK13651 cobalt transporter AT 99.7 2E-18 4.4E-23 171.1 0.1 132 108-261 31-193 (305)
216 PRK10789 putative multidrug tr 99.7 4.5E-18 9.9E-23 182.9 2.7 163 67-262 313-480 (569)
217 cd03245 ABCC_bacteriocin_expor 99.7 5.9E-18 1.3E-22 160.1 3.2 136 108-261 28-168 (220)
218 TIGR03005 ectoine_ehuA ectoine 99.7 1.5E-18 3.3E-23 167.7 -0.9 130 108-261 24-174 (252)
219 PRK09700 D-allose transporter 99.7 2.3E-18 4.9E-23 182.9 0.3 130 108-261 29-173 (510)
220 cd03254 ABCC_Glucan_exporter_l 99.7 5E-18 1.1E-22 161.6 2.6 136 108-261 27-167 (229)
221 PRK14238 phosphate transporter 99.7 2.2E-18 4.7E-23 168.4 -0.0 138 108-261 48-195 (271)
222 PRK14249 phosphate ABC transpo 99.7 1.9E-18 4.1E-23 166.9 -0.4 138 108-261 28-175 (251)
223 PRK14240 phosphate transporter 99.7 1.5E-18 3.3E-23 167.4 -1.1 138 108-261 27-174 (250)
224 TIGR01846 type_I_sec_HlyB type 99.7 7.1E-18 1.5E-22 185.5 4.0 162 67-261 455-621 (694)
225 PRK15439 autoinducer 2 ABC tra 99.7 1.1E-18 2.4E-23 185.2 -2.4 130 108-261 35-168 (510)
226 TIGR01184 ntrCD nitrate transp 99.7 2.1E-17 4.5E-22 157.6 6.6 125 108-261 9-142 (230)
227 cd03290 ABCC_SUR1_N The SUR do 99.7 1.6E-18 3.4E-23 163.9 -1.1 136 108-261 25-168 (218)
228 cd03229 ABC_Class3 This class 99.7 5.8E-18 1.3E-22 155.0 2.6 103 108-261 24-128 (178)
229 TIGR02324 CP_lyasePhnL phospho 99.7 1.1E-18 2.4E-23 165.5 -2.2 131 108-261 32-177 (224)
230 PRK14271 phosphate ABC transpo 99.7 2.1E-18 4.5E-23 168.9 -0.4 138 108-261 45-191 (276)
231 PF00005 ABC_tran: ABC transpo 99.7 2E-18 4.3E-23 150.8 -0.5 128 108-261 9-136 (137)
232 PRK13649 cbiO cobalt transport 99.7 5.5E-19 1.2E-23 173.4 -4.6 132 108-261 31-173 (280)
233 TIGR02323 CP_lyasePhnK phospho 99.7 1.8E-18 4E-23 167.2 -0.9 133 108-261 27-176 (253)
234 PRK14265 phosphate ABC transpo 99.7 2E-18 4.4E-23 168.8 -0.6 138 108-261 44-189 (274)
235 TIGR02204 MsbA_rel ABC transpo 99.7 8E-18 1.7E-22 181.4 3.9 163 67-262 337-505 (576)
236 PRK14251 phosphate ABC transpo 99.7 2.6E-18 5.7E-23 165.9 0.1 138 108-261 28-175 (251)
237 PTZ00265 multidrug resistance 99.7 4.1E-18 8.9E-23 198.7 1.6 174 67-261 1165-1386(1466)
238 PRK14257 phosphate ABC transpo 99.7 1.3E-17 2.7E-22 167.1 4.8 138 108-261 106-253 (329)
239 PRK14237 phosphate transporter 99.7 3.3E-18 7.2E-23 166.8 0.5 138 108-261 44-191 (267)
240 PRK14260 phosphate ABC transpo 99.7 2.6E-18 5.7E-23 166.7 -0.2 138 108-261 31-178 (259)
241 TIGR02770 nickel_nikD nickel i 99.7 6.6E-18 1.4E-22 161.0 2.4 137 108-261 10-153 (230)
242 PRK14263 phosphate ABC transpo 99.7 3.1E-18 6.7E-23 166.4 0.2 138 108-261 32-177 (261)
243 PRK14275 phosphate ABC transpo 99.7 2.7E-18 5.9E-23 169.0 -0.3 136 108-261 63-210 (286)
244 PRK14256 phosphate ABC transpo 99.7 3.3E-18 7.1E-23 165.3 0.3 139 108-261 28-176 (252)
245 cd03300 ABC_PotA_N PotA is an 99.7 1.6E-18 3.5E-23 165.4 -2.0 128 108-261 24-158 (232)
246 PRK14236 phosphate transporter 99.7 2.8E-18 6E-23 167.7 -1.0 139 108-262 49-197 (272)
247 cd03288 ABCC_SUR2 The SUR doma 99.7 9.8E-19 2.1E-23 169.5 -4.2 134 108-261 45-184 (257)
248 PRK10418 nikD nickel transport 99.7 3E-18 6.5E-23 165.8 -1.0 137 108-261 27-168 (254)
249 cd03248 ABCC_TAP TAP, the Tran 99.7 1.5E-18 3.2E-23 165.0 -3.1 131 108-261 38-178 (226)
250 PRK09473 oppD oligopeptide tra 99.7 1.2E-17 2.6E-22 167.4 3.2 138 108-261 40-189 (330)
251 PRK14255 phosphate ABC transpo 99.7 3.6E-18 7.9E-23 165.0 -0.5 138 108-261 29-176 (252)
252 PRK13547 hmuV hemin importer A 99.7 2.6E-18 5.7E-23 167.8 -1.5 138 108-261 25-182 (272)
253 PLN03232 ABC transporter C fam 99.7 4.9E-18 1.1E-22 199.4 0.5 163 67-262 1234-1400(1495)
254 TIGR02982 heterocyst_DevA ABC 99.7 8.1E-18 1.8E-22 159.3 1.7 130 108-261 29-169 (220)
255 COG4604 CeuD ABC-type enteroch 99.7 5E-18 1.1E-22 152.5 0.2 152 86-263 1-165 (252)
256 cd03267 ABC_NatA_like Similar 99.7 1.2E-17 2.5E-22 160.0 2.7 129 108-261 45-181 (236)
257 PRK11288 araG L-arabinose tran 99.7 4.3E-18 9.3E-23 180.4 -0.5 130 108-261 28-168 (501)
258 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 1E-17 2.3E-22 160.4 2.2 136 108-261 27-167 (238)
259 KOG0055|consensus 99.7 1.5E-17 3.4E-22 183.8 3.8 162 67-261 987-1154(1228)
260 PRK13639 cbiO cobalt transport 99.7 1.1E-18 2.3E-23 171.0 -4.8 131 108-261 26-165 (275)
261 PLN03130 ABC transporter C fam 99.7 6.1E-18 1.3E-22 199.0 0.6 162 67-261 1237-1402(1622)
262 PRK09544 znuC high-affinity zi 99.7 2.3E-18 4.9E-23 166.3 -2.5 119 108-261 28-148 (251)
263 PTZ00243 ABC transporter; Prov 99.7 1E-17 2.2E-22 196.8 1.7 164 66-262 1307-1475(1560)
264 COG4618 ArpD ABC-type protease 99.7 4.6E-17 1E-21 164.4 6.0 134 108-261 360-500 (580)
265 PRK10261 glutathione transport 99.7 2.9E-18 6.3E-23 185.9 -2.8 133 108-261 348-491 (623)
266 CHL00131 ycf16 sulfate ABC tra 99.7 8.3E-18 1.8E-22 162.4 0.6 133 108-261 31-179 (252)
267 TIGR01192 chvA glucan exporter 99.7 1.9E-17 4.1E-22 178.6 3.2 136 108-261 359-499 (585)
268 TIGR03873 F420-0_ABC_ATP propo 99.7 1.7E-17 3.6E-22 160.8 2.6 130 108-261 25-165 (256)
269 PRK14264 phosphate ABC transpo 99.7 7.5E-18 1.6E-22 167.3 0.0 159 85-261 44-228 (305)
270 PRK14258 phosphate ABC transpo 99.7 7.9E-18 1.7E-22 163.5 0.1 138 108-261 31-178 (261)
271 PRK13645 cbiO cobalt transport 99.7 8.2E-18 1.8E-22 165.9 0.0 132 108-261 35-178 (289)
272 PRK13541 cytochrome c biogenes 99.7 6.4E-17 1.4E-21 150.3 5.7 126 108-261 24-151 (195)
273 COG1123 ATPase components of v 99.7 5E-17 1.1E-21 168.2 5.1 166 67-261 5-182 (539)
274 cd03299 ABC_ModC_like Archeal 99.7 2.3E-17 5E-22 157.8 2.4 128 108-261 23-157 (235)
275 cd03253 ABCC_ATM1_transporter 99.7 3.4E-17 7.3E-22 156.6 3.5 136 108-261 25-165 (236)
276 TIGR00957 MRP_assoc_pro multi 99.7 2.1E-17 4.6E-22 194.4 2.6 163 67-262 1284-1450(1522)
277 PRK09700 D-allose transporter 99.7 3.2E-17 6.9E-22 174.1 3.7 152 85-261 264-437 (510)
278 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 1.6E-17 3.5E-22 157.7 1.3 137 87-261 23-170 (224)
279 PRK10261 glutathione transport 99.7 7.2E-18 1.6E-22 182.8 -1.4 135 108-261 40-196 (623)
280 PRK10938 putative molybdenum t 99.7 1.1E-17 2.4E-22 176.8 -0.1 131 108-261 27-163 (490)
281 TIGR01194 cyc_pep_trnsptr cycl 99.7 3.6E-17 7.9E-22 175.3 3.8 159 67-261 337-498 (555)
282 PRK14266 phosphate ABC transpo 99.7 8.6E-18 1.9E-22 162.2 -1.1 138 108-261 27-174 (250)
283 COG4133 CcmA ABC-type transpor 99.7 2.6E-17 5.6E-22 147.1 2.0 130 108-262 26-159 (209)
284 PRK03695 vitamin B12-transport 99.7 4.9E-17 1.1E-21 156.8 4.1 129 108-261 20-161 (248)
285 PRK10522 multidrug transporter 99.7 3.3E-17 7.2E-22 175.4 3.2 156 67-261 322-477 (547)
286 TIGR00968 3a0106s01 sulfate AB 99.7 3E-17 6.5E-22 157.2 2.4 128 108-261 24-158 (237)
287 cd03223 ABCD_peroxisomal_ALDP 99.6 5.3E-17 1.1E-21 147.0 3.6 96 108-262 25-120 (166)
288 cd03237 ABC_RNaseL_inhibitor_d 99.6 9.9E-17 2.1E-21 154.4 5.7 118 108-261 23-143 (246)
289 PRK15134 microcin C ABC transp 99.6 1E-17 2.2E-22 178.7 -1.4 156 84-261 273-453 (529)
290 TIGR03771 anch_rpt_ABC anchore 99.6 1.1E-16 2.5E-21 151.8 5.9 127 108-261 4-141 (223)
291 COG1101 PhnK ABC-type uncharac 99.6 7E-17 1.5E-21 147.1 4.0 137 108-261 30-176 (263)
292 PRK11819 putative ABC transpor 99.6 2.7E-17 5.9E-22 176.3 1.5 118 108-261 31-191 (556)
293 TIGR03740 galliderm_ABC gallid 99.6 9.3E-17 2E-21 152.3 5.0 126 108-261 24-152 (223)
294 TIGR01187 potA spermidine/putr 99.6 2.6E-17 5.7E-22 164.7 0.5 121 115-261 1-128 (325)
295 TIGR02633 xylG D-xylose ABC tr 99.6 8.1E-18 1.8E-22 178.3 -3.5 133 108-261 25-169 (500)
296 PRK14252 phosphate ABC transpo 99.6 1.3E-17 2.8E-22 162.4 -1.9 138 108-261 40-189 (265)
297 PRK10982 galactose/methyl gala 99.6 2.3E-17 5E-22 174.4 -0.5 130 108-261 22-162 (491)
298 PRK15056 manganese/iron transp 99.6 1.2E-16 2.6E-21 156.2 4.6 129 108-261 31-170 (272)
299 KOG0056|consensus 99.6 4.4E-17 9.5E-22 163.2 1.3 134 108-261 562-702 (790)
300 PRK13549 xylose transporter AT 99.6 3.3E-17 7.1E-22 173.9 0.5 156 85-261 258-433 (506)
301 TIGR03269 met_CoM_red_A2 methy 99.6 3.1E-17 6.7E-22 174.7 0.2 158 85-261 278-455 (520)
302 TIGR01271 CFTR_protein cystic 99.6 5.1E-17 1.1E-21 190.6 2.1 163 66-262 1216-1382(1490)
303 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 5E-17 1.1E-21 174.1 1.7 124 108-261 29-189 (552)
304 PRK14244 phosphate ABC transpo 99.6 2E-16 4.4E-21 152.7 5.8 137 108-261 29-177 (251)
305 PRK15134 microcin C ABC transp 99.6 3.1E-17 6.8E-22 174.9 0.0 140 108-261 33-184 (529)
306 TIGR01257 rim_protein retinal- 99.6 1.5E-17 3.3E-22 195.3 -3.0 153 84-261 1935-2098(2272)
307 TIGR02633 xylG D-xylose ABC tr 99.6 5.9E-17 1.3E-21 171.7 1.7 156 85-261 256-431 (500)
308 PRK13546 teichoic acids export 99.6 1.3E-16 2.9E-21 155.1 3.0 117 108-261 48-171 (264)
309 PRK15064 ABC transporter ATP-b 99.6 5E-17 1.1E-21 173.4 -0.1 120 108-261 25-183 (530)
310 COG4559 ABC-type hemin transpo 99.6 7.7E-17 1.7E-21 146.5 1.1 131 108-262 25-170 (259)
311 PRK13545 tagH teichoic acids e 99.6 3E-17 6.6E-22 170.4 -1.9 150 75-261 10-171 (549)
312 PRK09580 sufC cysteine desulfu 99.6 4.2E-17 9E-22 157.1 -1.1 131 108-261 25-173 (248)
313 PTZ00265 multidrug resistance 99.6 2E-16 4.4E-21 184.6 4.4 162 67-261 382-607 (1466)
314 TIGR01257 rim_protein retinal- 99.6 1.5E-17 3.2E-22 195.3 -5.1 152 85-261 927-1089(2272)
315 COG4136 ABC-type uncharacteriz 99.6 7.1E-16 1.5E-20 132.9 6.2 132 108-262 26-163 (213)
316 PRK15064 ABC transporter ATP-b 99.6 5.2E-17 1.1E-21 173.3 -1.1 143 85-261 318-466 (530)
317 PRK15177 Vi polysaccharide exp 99.6 3.5E-16 7.5E-21 147.4 4.2 117 108-261 11-132 (213)
318 TIGR03269 met_CoM_red_A2 methy 99.6 2.3E-17 5.1E-22 175.6 -4.3 130 108-261 24-196 (520)
319 PRK10535 macrolide transporter 99.6 2.8E-17 6E-22 178.9 -3.8 130 108-261 32-172 (648)
320 COG1119 ModF ABC-type molybden 99.6 1.5E-16 3.2E-21 148.3 1.5 150 86-261 31-199 (257)
321 COG4172 ABC-type uncharacteriz 99.6 3.1E-16 6.7E-21 154.4 3.7 133 108-262 311-455 (534)
322 cd03291 ABCC_CFTR1 The CFTR su 99.6 2.5E-16 5.3E-21 154.4 2.9 123 108-261 61-187 (282)
323 PLN03211 ABC transporter G-25; 99.6 2.5E-16 5.5E-21 171.1 3.2 149 90-261 72-234 (659)
324 cd03217 ABC_FeS_Assembly ABC-t 99.6 3.4E-16 7.4E-21 146.0 3.1 108 108-261 24-132 (200)
325 COG4586 ABC-type uncharacteriz 99.6 6.7E-16 1.5E-20 145.3 4.8 130 108-261 48-184 (325)
326 COG4674 Uncharacterized ABC-ty 99.6 2.6E-17 5.6E-22 147.7 -4.9 130 108-261 29-175 (249)
327 COG4107 PhnK ABC-type phosphon 99.6 1.6E-15 3.5E-20 133.8 6.3 156 83-261 3-179 (258)
328 COG0396 sufC Cysteine desulfur 99.6 2.8E-16 6.2E-21 144.8 1.6 132 108-260 28-171 (251)
329 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 1.1E-16 2.3E-21 171.6 -1.4 142 85-261 321-471 (552)
330 PRK11288 araG L-arabinose tran 99.6 8.8E-16 1.9E-20 162.8 5.1 133 108-261 277-424 (501)
331 PRK10762 D-ribose transporter 99.6 1.2E-15 2.6E-20 161.8 6.0 133 108-261 276-423 (501)
332 PRK11819 putative ABC transpor 99.6 1.3E-16 2.8E-21 171.1 -1.8 142 85-261 323-473 (556)
333 PRK10938 putative molybdenum t 99.6 1.8E-16 3.8E-21 167.7 -1.0 156 84-261 258-429 (490)
334 PRK15439 autoinducer 2 ABC tra 99.6 2E-15 4.4E-20 160.3 6.4 133 108-261 287-431 (510)
335 COG4608 AppF ABC-type oligopep 99.6 5.5E-16 1.2E-20 147.2 1.3 101 108-261 37-137 (268)
336 cd03214 ABC_Iron-Siderophores_ 99.6 1E-15 2.3E-20 140.3 3.1 103 108-261 23-125 (180)
337 TIGR00954 3a01203 Peroxysomal 99.6 8.9E-16 1.9E-20 167.4 2.6 125 108-262 476-611 (659)
338 PLN03130 ABC transporter C fam 99.6 1.5E-15 3.3E-20 178.9 4.5 123 108-261 641-768 (1622)
339 TIGR00957 MRP_assoc_pro multi 99.6 1.1E-15 2.4E-20 180.0 2.5 123 108-261 662-788 (1522)
340 cd03236 ABC_RNaseL_inhibitor_d 99.5 1.6E-15 3.5E-20 146.7 3.2 129 108-261 24-167 (255)
341 COG1134 TagH ABC-type polysacc 99.5 1.2E-15 2.6E-20 142.3 2.1 125 108-261 51-175 (249)
342 cd03216 ABC_Carb_Monos_I This 99.5 2E-15 4.4E-20 136.2 3.4 86 108-261 24-110 (163)
343 PRK11147 ABC transporter ATPas 99.5 3.2E-16 7E-21 170.4 -2.4 141 86-261 319-468 (635)
344 PLN03232 ABC transporter C fam 99.5 1.9E-15 4.2E-20 177.7 3.8 124 108-261 641-768 (1495)
345 PRK10982 galactose/methyl gala 99.5 1.8E-15 3.8E-20 160.1 3.0 133 108-261 272-419 (491)
346 PRK10636 putative ABC transpor 99.5 5.1E-16 1.1E-20 168.7 -1.7 143 85-261 311-458 (638)
347 cd03222 ABC_RNaseL_inhibitor T 99.5 3.6E-15 7.8E-20 136.1 4.0 77 108-261 23-99 (177)
348 TIGR00956 3a01205 Pleiotropic 99.5 1.4E-15 3.1E-20 177.3 0.7 133 108-261 787-930 (1394)
349 COG0488 Uup ATPase components 99.5 2.6E-15 5.7E-20 157.8 2.4 124 108-261 27-181 (530)
350 KOG0054|consensus 99.5 2.2E-14 4.7E-19 162.4 9.1 167 62-262 1132-1304(1381)
351 PRK13409 putative ATPase RIL; 99.5 8E-15 1.7E-19 157.5 5.3 137 85-261 339-481 (590)
352 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.5 7.8E-15 1.7E-19 129.7 3.6 75 108-261 24-98 (144)
353 TIGR00955 3a01204 The Eye Pigm 99.5 1E-14 2.2E-19 158.1 5.3 135 108-261 49-194 (617)
354 COG4172 ABC-type uncharacteriz 99.5 3E-14 6.4E-19 140.6 6.9 140 108-261 34-185 (534)
355 COG5265 ATM1 ABC-type transpor 99.5 1.1E-15 2.4E-20 151.3 -3.5 134 108-261 287-427 (497)
356 PRK10636 putative ABC transpor 99.5 1.6E-15 3.4E-20 164.9 -2.7 131 108-261 25-177 (638)
357 PLN03073 ABC transporter F fam 99.5 5.9E-15 1.3E-19 161.4 1.0 141 85-262 507-656 (718)
358 TIGR01271 CFTR_protein cystic 99.5 1.2E-14 2.6E-19 170.9 3.4 121 108-261 450-576 (1490)
359 PRK11147 ABC transporter ATPas 99.5 5.8E-15 1.3E-19 160.6 0.6 130 108-261 27-184 (635)
360 PRK13409 putative ATPase RIL; 99.5 3.4E-14 7.5E-19 152.6 5.8 127 108-261 97-240 (590)
361 cd00267 ABC_ATPase ABC (ATP-bi 99.5 3.1E-14 6.7E-19 127.5 3.6 86 108-261 23-108 (157)
362 KOG0054|consensus 99.5 3.8E-14 8.3E-19 160.5 4.9 124 108-262 545-672 (1381)
363 TIGR00956 3a01205 Pleiotropic 99.4 7.4E-14 1.6E-18 163.0 6.1 138 108-261 85-237 (1394)
364 KOG0061|consensus 99.4 1.2E-13 2.6E-18 148.9 6.3 135 108-261 54-198 (613)
365 PLN03140 ABC transporter G fam 99.4 8.9E-14 1.9E-18 162.2 4.5 135 108-261 189-364 (1470)
366 PLN03140 ABC transporter G fam 99.4 9.9E-14 2.1E-18 161.8 4.6 133 108-261 904-1047(1470)
367 PTZ00243 ABC transporter; Prov 99.4 1.2E-13 2.6E-18 162.7 3.3 123 108-261 684-810 (1560)
368 COG4778 PhnL ABC-type phosphon 99.4 4.5E-13 9.7E-18 118.1 5.0 132 108-262 35-181 (235)
369 cd03238 ABC_UvrA The excision 99.4 3.3E-13 7.1E-18 123.1 4.2 97 108-261 19-117 (176)
370 KOG0059|consensus 99.3 1.4E-13 3E-18 154.5 -0.1 152 85-261 563-726 (885)
371 COG0488 Uup ATPase components 99.3 2.9E-13 6.2E-18 142.5 0.4 142 86-261 321-467 (530)
372 COG4615 PvdE ABC-type sideroph 99.3 1.6E-13 3.5E-18 135.0 -1.6 127 108-259 347-474 (546)
373 PLN03073 ABC transporter F fam 99.3 1.4E-13 3.1E-18 150.7 -4.2 48 85-134 176-227 (718)
374 COG4178 ABC-type uncharacteriz 99.2 1E-12 2.2E-17 138.0 -1.4 130 108-279 417-571 (604)
375 cd03278 ABC_SMC_barmotin Barmo 99.2 9.4E-12 2E-16 115.8 2.2 121 108-261 21-145 (197)
376 KOG0065|consensus 99.1 1.7E-11 3.7E-16 136.6 1.7 140 101-261 804-958 (1391)
377 cd03270 ABC_UvrA_I The excisio 99.1 7.7E-11 1.7E-15 112.1 5.8 35 227-261 131-167 (226)
378 KOG0062|consensus 99.1 3.1E-11 6.8E-16 122.7 2.4 28 234-261 199-226 (582)
379 cd03272 ABC_SMC3_euk Eukaryoti 99.0 1.2E-10 2.6E-15 111.8 4.2 33 229-261 154-190 (243)
380 PF03205 MobB: Molybdopterin g 99.0 6.2E-11 1.3E-15 104.1 1.5 115 111-229 1-140 (140)
381 COG4138 BtuD ABC-type cobalami 99.0 3.8E-11 8.2E-16 106.5 -0.2 129 108-261 23-160 (248)
382 KOG2355|consensus 99.0 3.5E-10 7.5E-15 102.9 5.6 156 66-261 12-175 (291)
383 cd03271 ABC_UvrA_II The excisi 99.0 3E-10 6.4E-15 110.0 5.2 144 108-261 19-200 (261)
384 KOG0066|consensus 99.0 1.2E-10 2.6E-15 116.0 2.1 124 108-263 611-734 (807)
385 cd03240 ABC_Rad50 The catalyti 99.0 2.2E-10 4.8E-15 107.2 3.0 119 109-261 22-149 (204)
386 cd03279 ABC_sbcCD SbcCD and ot 99.0 6.1E-10 1.3E-14 104.9 5.3 25 109-133 27-51 (213)
387 cd03273 ABC_SMC2_euk Eukaryoti 99.0 2.2E-10 4.7E-15 110.7 2.3 34 228-261 161-198 (251)
388 KOG0060|consensus 98.9 2.1E-10 4.5E-15 118.2 0.7 123 108-261 459-598 (659)
389 COG1245 Predicted ATPase, RNas 98.9 7E-10 1.5E-14 111.5 3.4 54 84-137 340-394 (591)
390 KOG0927|consensus 98.8 1.4E-09 3E-14 111.5 2.9 119 108-261 414-537 (614)
391 cd03274 ABC_SMC4_euk Eukaryoti 98.8 9.5E-10 2.1E-14 103.5 -0.0 31 231-261 125-159 (212)
392 KOG0064|consensus 98.8 2.4E-09 5.3E-14 109.2 2.2 124 108-261 506-640 (728)
393 cd03275 ABC_SMC1_euk Eukaryoti 98.7 4E-09 8.8E-14 101.6 1.2 30 232-261 154-187 (247)
394 cd03276 ABC_SMC6_euk Eukaryoti 98.7 2.6E-08 5.7E-13 92.8 6.4 33 229-261 105-141 (198)
395 KOG0927|consensus 98.7 2.6E-09 5.6E-14 109.5 -0.6 30 108-137 99-128 (614)
396 COG4170 SapD ABC-type antimicr 98.6 3.8E-09 8.3E-14 96.4 -0.6 139 108-261 31-186 (330)
397 COG1129 MglA ABC-type sugar tr 98.6 2.5E-08 5.4E-13 103.3 4.7 133 108-261 283-429 (500)
398 cd03283 ABC_MutS-like MutS-lik 98.6 1.2E-07 2.7E-12 88.3 6.6 27 108-134 23-49 (199)
399 PRK00635 excinuclease ABC subu 98.5 2E-07 4.4E-12 109.4 6.5 35 227-261 803-840 (1809)
400 PRK00349 uvrA excinuclease ABC 98.4 4.3E-07 9.3E-12 102.0 7.5 35 227-261 824-861 (943)
401 COG2401 ABC-type ATPase fused 98.4 3E-07 6.5E-12 91.9 5.5 128 108-260 407-534 (593)
402 COG1245 Predicted ATPase, RNas 98.4 8.4E-08 1.8E-12 96.8 1.5 30 108-137 98-127 (591)
403 cd00820 PEPCK_HprK Phosphoenol 98.4 9.7E-08 2.1E-12 79.3 1.0 65 108-198 13-77 (107)
404 cd03280 ABC_MutS2 MutS2 homolo 98.3 1.2E-06 2.7E-11 81.6 7.8 24 237-261 95-118 (200)
405 cd03227 ABC_Class2 ABC-type Cl 98.3 1.1E-06 2.5E-11 79.0 6.8 29 109-137 20-48 (162)
406 KOG0065|consensus 98.3 4.9E-07 1.1E-11 101.8 4.8 135 108-261 139-288 (1391)
407 cd03243 ABC_MutS_homologs The 98.3 1.6E-06 3.5E-11 80.9 7.1 27 108-134 27-53 (202)
408 TIGR02858 spore_III_AA stage I 98.2 1.1E-06 2.3E-11 85.6 4.7 39 111-164 112-150 (270)
409 TIGR03238 dnd_assoc_3 dnd syst 98.2 6.3E-07 1.4E-11 92.3 1.4 57 93-166 11-72 (504)
410 cd03277 ABC_SMC5_euk Eukaryoti 98.1 3.5E-06 7.5E-11 79.4 6.2 32 230-261 123-158 (213)
411 cd03239 ABC_SMC_head The struc 98.1 4.6E-06 1E-10 76.3 6.0 28 234-261 95-126 (178)
412 TIGR00630 uvra excinuclease AB 98.1 4.8E-06 1E-10 93.6 6.2 35 227-261 822-859 (924)
413 KOG0066|consensus 98.0 3.6E-06 7.8E-11 84.6 4.2 35 228-262 407-441 (807)
414 cd03281 ABC_MSH5_euk MutS5 hom 98.0 1.6E-05 3.5E-10 74.9 7.1 23 111-133 30-52 (213)
415 PRK10416 signal recognition pa 98.0 8.8E-06 1.9E-10 81.2 5.6 43 108-153 112-154 (318)
416 PTZ00132 GTP-binding nuclear p 98.0 9.7E-06 2.1E-10 76.2 5.5 36 227-262 146-181 (215)
417 KOG0062|consensus 98.0 2.3E-06 4.9E-11 87.8 0.9 122 108-261 388-510 (582)
418 TIGR00554 panK_bact pantothena 97.9 1.9E-05 4.1E-10 77.6 7.2 52 85-136 31-88 (290)
419 COG3845 ABC-type uncharacteriz 97.9 1E-05 2.2E-10 83.0 4.7 133 108-261 282-431 (501)
420 cd01130 VirB11-like_ATPase Typ 97.9 8.5E-06 1.8E-10 75.0 3.8 30 108-137 23-52 (186)
421 TIGR01425 SRP54_euk signal rec 97.9 0.00011 2.3E-09 75.9 11.2 121 110-259 100-222 (429)
422 PF03029 ATP_bind_1: Conserved 97.8 1.5E-05 3.3E-10 76.3 4.4 41 115-158 1-41 (238)
423 cd03282 ABC_MSH4_euk MutS4 hom 97.8 1.4E-05 3.1E-10 74.7 3.6 29 108-136 27-55 (204)
424 cd03285 ABC_MSH2_euk MutS2 hom 97.8 1.9E-05 4.1E-10 74.9 4.3 25 109-133 29-53 (222)
425 cd03242 ABC_RecF RecF is a rec 97.8 9E-05 1.9E-09 72.4 9.0 29 234-262 184-221 (270)
426 KOG0063|consensus 97.8 3.4E-05 7.4E-10 77.7 5.7 30 108-137 365-394 (592)
427 PRK09270 nucleoside triphospha 97.8 8.1E-05 1.7E-09 70.9 7.9 30 108-137 31-60 (229)
428 PRK00889 adenylylsulfate kinas 97.7 3.7E-05 7.9E-10 69.9 5.0 40 108-150 2-41 (175)
429 KOG1532|consensus 97.7 0.00013 2.8E-09 69.6 8.3 137 108-260 17-158 (366)
430 cd03114 ArgK-like The function 97.7 3.9E-05 8.4E-10 68.0 4.7 39 112-153 1-39 (148)
431 cd03241 ABC_RecN RecN ATPase i 97.7 4E-05 8.7E-10 75.1 5.2 28 234-261 171-202 (276)
432 cd03284 ABC_MutS1 MutS1 homolo 97.7 8.1E-05 1.7E-09 70.3 7.0 25 110-134 30-54 (216)
433 cd02025 PanK Pantothenate kina 97.7 4E-05 8.6E-10 72.6 4.6 25 112-136 1-25 (220)
434 smart00534 MUTSac ATPase domai 97.6 9E-05 1.9E-09 68.2 6.1 25 113-137 2-27 (185)
435 TIGR00235 udk uridine kinase. 97.6 5.3E-05 1.1E-09 71.0 4.6 28 108-135 4-31 (207)
436 TIGR00750 lao LAO/AO transport 97.6 7.3E-05 1.6E-09 74.2 5.7 43 108-153 32-74 (300)
437 cd02023 UMPK Uridine monophosp 97.6 5.7E-05 1.2E-09 70.1 4.5 35 112-151 1-35 (198)
438 TIGR00176 mobB molybdopterin-g 97.6 8.3E-05 1.8E-09 66.4 5.3 50 112-164 1-50 (155)
439 PRK03846 adenylylsulfate kinas 97.6 7.5E-05 1.6E-09 69.4 5.1 41 108-151 22-62 (198)
440 PRK05480 uridine/cytidine kina 97.6 8.7E-05 1.9E-09 69.5 5.3 39 108-151 4-42 (209)
441 PF13555 AAA_29: P-loop contai 97.6 9.8E-05 2.1E-09 55.0 4.3 29 109-137 22-50 (62)
442 PRK11889 flhF flagellar biosyn 97.6 0.0001 2.2E-09 74.8 5.7 42 109-153 240-281 (436)
443 PRK12726 flagellar biosynthesi 97.5 0.00011 2.4E-09 74.2 5.6 43 108-153 204-246 (407)
444 cd01128 rho_factor Transcripti 97.5 0.00045 9.7E-09 66.6 9.5 28 108-135 14-41 (249)
445 smart00382 AAA ATPases associa 97.5 9.5E-05 2.1E-09 62.8 4.5 28 110-137 2-29 (148)
446 TIGR00064 ftsY signal recognit 97.5 0.00011 2.5E-09 71.7 5.3 41 108-151 70-110 (272)
447 PRK06995 flhF flagellar biosyn 97.5 0.00011 2.4E-09 77.0 5.4 42 108-151 254-296 (484)
448 PRK09435 membrane ATPase/prote 97.5 0.00011 2.5E-09 73.5 5.3 43 109-154 55-97 (332)
449 PRK10751 molybdopterin-guanine 97.5 0.00014 3.1E-09 65.9 5.4 53 109-164 5-57 (173)
450 COG3910 Predicted ATPase [Gene 97.5 0.00044 9.5E-09 62.8 8.2 26 109-134 36-61 (233)
451 KOG1533|consensus 97.5 9.5E-05 2.1E-09 69.0 4.1 45 113-160 5-49 (290)
452 PRK05541 adenylylsulfate kinas 97.5 0.00015 3.2E-09 65.9 5.2 38 108-148 5-42 (176)
453 PRK09825 idnK D-gluconate kina 97.5 9.6E-05 2.1E-09 67.5 3.9 26 109-134 2-27 (176)
454 PRK13768 GTPase; Provisional 97.4 0.00019 4.2E-09 69.4 5.6 42 112-156 4-45 (253)
455 cd03287 ABC_MSH3_euk MutS3 hom 97.4 0.0034 7.4E-08 59.5 13.8 30 108-137 29-59 (222)
456 cd03116 MobB Molybdenum is an 97.4 0.00023 5.1E-09 63.8 5.5 52 111-165 2-53 (159)
457 TIGR03263 guanyl_kin guanylate 97.4 0.00015 3.3E-09 66.0 4.2 25 110-134 1-25 (180)
458 PRK00300 gmk guanylate kinase; 97.4 0.00018 3.9E-09 67.0 4.7 27 108-134 3-29 (205)
459 PRK10078 ribose 1,5-bisphospho 97.4 0.00012 2.5E-09 67.4 3.3 25 110-134 2-26 (186)
460 KOG1534|consensus 97.4 0.00012 2.5E-09 67.4 3.2 47 112-161 5-51 (273)
461 TIGR03499 FlhF flagellar biosy 97.4 0.00022 4.8E-09 70.1 5.4 44 109-153 193-236 (282)
462 TIGR00959 ffh signal recogniti 97.4 0.00072 1.6E-08 70.1 9.3 121 111-260 100-223 (428)
463 TIGR01069 mutS2 MutS2 family p 97.4 0.00028 6E-09 78.5 6.6 24 111-134 323-346 (771)
464 cd03115 SRP The signal recogni 97.4 0.00026 5.6E-09 64.1 5.3 39 112-153 2-40 (173)
465 PRK14493 putative bifunctional 97.3 0.00034 7.4E-09 68.4 6.0 50 111-165 2-51 (274)
466 PRK05703 flhF flagellar biosyn 97.3 0.00028 6E-09 73.3 5.6 43 108-153 219-263 (424)
467 cd02019 NK Nucleoside/nucleoti 97.3 0.00031 6.6E-09 53.7 4.5 33 112-149 1-33 (69)
468 smart00053 DYNc Dynamin, GTPas 97.3 0.0026 5.6E-08 61.0 11.7 26 109-134 25-50 (240)
469 PRK10867 signal recognition pa 97.3 0.0013 2.8E-08 68.3 10.1 124 110-261 100-225 (433)
470 COG1763 MobB Molybdopterin-gua 97.3 0.00072 1.6E-08 60.6 7.1 54 111-167 3-56 (161)
471 TIGR00455 apsK adenylylsulfate 97.3 0.0003 6.5E-09 64.5 4.9 40 108-150 16-55 (184)
472 cd01120 RecA-like_NTPases RecA 97.3 0.00028 6.1E-09 62.2 4.6 38 112-152 1-38 (165)
473 PF13207 AAA_17: AAA domain; P 97.3 0.00026 5.7E-09 59.9 4.0 23 112-134 1-23 (121)
474 PLN02796 D-glycerate 3-kinase 97.3 0.00031 6.7E-09 70.3 4.9 26 112-137 102-127 (347)
475 TIGR02322 phosphon_PhnN phosph 97.3 0.00024 5.2E-09 64.7 3.6 25 110-134 1-25 (179)
476 cd02034 CooC The accessory pro 97.2 0.00045 9.8E-09 58.6 4.7 36 113-151 2-37 (116)
477 PRK06731 flhF flagellar biosyn 97.2 0.00049 1.1E-08 67.0 5.6 42 109-153 74-115 (270)
478 PRK14974 cell division protein 97.2 0.0004 8.7E-09 69.7 5.1 40 110-152 140-179 (336)
479 cd02027 APSK Adenosine 5'-phos 97.2 0.00033 7.1E-09 62.1 3.9 36 112-150 1-36 (149)
480 cd02026 PRK Phosphoribulokinas 97.2 0.00025 5.5E-09 69.3 3.2 26 112-137 1-26 (273)
481 cd01854 YjeQ_engC YjeQ/EngC. 97.2 0.00038 8.2E-09 68.7 4.5 29 109-137 160-188 (287)
482 PF00485 PRK: Phosphoribulokin 97.2 0.00056 1.2E-08 63.3 5.1 26 112-137 1-26 (194)
483 PRK07667 uridine kinase; Provi 97.2 0.00059 1.3E-08 63.2 5.2 39 110-151 17-55 (193)
484 PRK08118 topology modulation p 97.1 0.00045 9.8E-09 62.5 4.3 24 111-134 2-25 (167)
485 PF03308 ArgK: ArgK protein; 97.1 0.00055 1.2E-08 65.5 4.9 125 108-258 27-151 (266)
486 cd02028 UMPK_like Uridine mono 97.1 0.00049 1.1E-08 63.0 4.4 36 112-150 1-36 (179)
487 PRK15453 phosphoribulokinase; 97.1 0.00069 1.5E-08 65.9 5.5 40 108-150 3-42 (290)
488 PF01583 APS_kinase: Adenylyls 97.1 0.00048 1E-08 61.4 4.1 38 110-150 2-39 (156)
489 PRK12727 flagellar biosynthesi 97.1 0.00059 1.3E-08 71.8 5.3 44 108-152 348-391 (559)
490 PRK14722 flhF flagellar biosyn 97.1 0.00064 1.4E-08 69.1 5.4 42 108-152 135-178 (374)
491 PLN03046 D-glycerate 3-kinase; 97.1 0.00056 1.2E-08 69.9 4.9 27 111-137 213-239 (460)
492 PRK07261 topology modulation p 97.1 0.00059 1.3E-08 62.0 4.5 23 111-133 1-23 (171)
493 PRK14723 flhF flagellar biosyn 97.1 0.00054 1.2E-08 75.2 4.9 41 109-152 184-226 (767)
494 PRK09183 transposase/IS protei 97.1 0.00068 1.5E-08 65.8 4.8 38 108-148 100-137 (259)
495 PRK13949 shikimate kinase; Pro 97.1 0.00061 1.3E-08 61.7 4.2 23 112-134 3-25 (169)
496 PRK05057 aroK shikimate kinase 97.0 0.00077 1.7E-08 61.3 4.7 25 110-134 4-28 (172)
497 cd00009 AAA The AAA+ (ATPases 97.0 0.001 2.2E-08 57.0 5.4 29 109-137 18-46 (151)
498 KOG0780|consensus 97.0 0.0034 7.4E-08 62.8 9.4 124 109-261 100-225 (483)
499 PRK13185 chlL protochlorophyll 97.0 0.00086 1.9E-08 65.3 5.3 43 111-157 3-45 (270)
500 PRK06793 fliI flagellum-specif 97.0 0.0016 3.5E-08 67.3 7.4 28 108-135 154-181 (432)
No 1
>KOG2749|consensus
Probab=100.00 E-value=6e-93 Score=679.60 Aligned_cols=410 Identities=47% Similarity=0.873 Sum_probs=397.6
Q ss_pred eEEEeCCCCeEEEEEe-CceEEEEEEeeEEEEeceeccCCCeEEecCCceEEEEeccCcEEEEEeeccceeeeecCCcch
Q psy2946 9 QTFELKQDQELRFEVE-NAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSITMKNARKNMTYVSKETPMN 87 (455)
Q Consensus 9 ~~~~l~~~~e~r~e~~-~~~~~i~l~~G~aei~G~el~~~~~~~~~~~~~~~i~t~~g~~i~i~g~~~~~~y~~~~t~ml 87 (455)
+.+.|++++|||||+. .+++.++|++|.|||||+||+.++||+|+.+.|+++|||+||+|+++| .++.+|++++|||.
T Consensus 2 ~~~~L~k~sElRiev~~~~~l~l~lvsG~AEIFGtEL~~~~~ytF~~~~k~aifTw~Gctlev~G-~t~~~YVs~eTpM~ 80 (415)
T KOG2749|consen 2 KEIVLEKESELRIEVEETQPLQLRLVSGLAEIFGTELALEKWYTFPNGMKVAIFTWQGCTLEVEG-TTEVEYVSDETPMV 80 (415)
T ss_pred CceEecCCCeEEEEEcCCCcEEEEEeccchhhhccccccCCceecCCCceEEEEEEeccEEEEec-cccceEecCCCChh
Confidence 4589999999999999 789999999999999999999999999988999999999999999999 99999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc
Q psy2946 88 YYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI 167 (455)
Q Consensus 88 ~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~ 167 (455)
.|.|+|.++++.|..+.+....||+++|+||.++|||||+|+|+|++.+. ||+|+|+|+|||||.+++||++++..+
T Consensus 81 ~ylNlH~ale~~R~~~e~~~~~GPrv~vVGp~d~GKsTl~r~L~nyavk~---gr~Plfv~LDvgQ~sitiPGsiaA~~i 157 (415)
T KOG2749|consen 81 LYLNLHAALEKRRMQAEEESSYGPRVMVVGPTDVGKSTLCRILLNYAVKQ---GRRPLFVELDVGQGSITIPGSIAAIPI 157 (415)
T ss_pred hhhhHHHHHHHHhhhhhhhhccCCEEEEECCCccchHHHHHHHHHHHHHc---CCcceEEEcCCCCCceecccchhheec
Confidence 99999999999999888766789999999999999999999999999999 999999999999999999999999999
Q ss_pred ccccccCCCCcccCceEEEecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHH
Q psy2946 168 ERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKS 247 (455)
Q Consensus 168 ~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~a 247 (455)
+.+++...||..+.|++++||+.|+..|+.+|..++.++++.+.+++..+++.+.+|+||||+||+.+.|++.++++|++
T Consensus 158 ~~~~D~~eGf~l~~pLV~~FG~~sp~~N~~LY~~~~s~La~v~~~~~~~n~~ar~sG~iInT~g~i~~egy~~llhai~~ 237 (415)
T KOG2749|consen 158 EMPLDVIEGFSLTAPLVYNFGLTSPSTNLELYKALVSELAEVLKQRLSLNPEARVSGCIINTCGWIEGEGYAALLHAIKA 237 (415)
T ss_pred ccccchhhCcccCCceeeeccCCCCCcCHHHHHHHHHHHHHHHHHHhccCchhcccceEEeccceeccccHHHHHHHHHH
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCchhhHHHHhhCC--CceEEEEeCCCCCcccCCHHHHHHHHHHHHHHhccCCCCCCCCceeEEEEeccEE
Q psy2946 248 LRVDNILVLDQERLYNELIRELP--KSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSRLKPFNPHSFDIKFGEVQ 325 (455)
Q Consensus 248 l~~~~~vll~DEpl~~~l~~~l~--~~~~v~~l~~s~g~~~r~~~~~~~~r~~~i~~YF~g~~~~~l~p~~~~v~~~~~~ 325 (455)
|..+.++++++|+++++|.+.++ .+++++++|||+|++.|+...|+++|..+|++||||....+|+||.+.++|+|++
T Consensus 238 f~v~vviVLg~ErLy~~lkk~~~~~~~v~vv~lpKsgGv~~Rs~~~r~~~r~~~I~eYFYG~~~~~lsP~t~~Vkf~Dl~ 317 (415)
T KOG2749|consen 238 FEVDVVIVLGQERLYSSLKKDLPPKKNVRVVKLPKSGGVVARSKEVRRKLRGRSIREYFYGSVRNELSPFTFNVKFSDLT 317 (415)
T ss_pred cCccEEEEeccHHHHHHHHhhccccccceEEEecCCCCeEeehHHHHHHHhhhhHHHhcccccCCcccceeEeeecceEE
Confidence 99999999999999999999988 7899999999999999999999999999999999997777999999999999999
Q ss_pred EEEecCCCCCCccCcCCCccccceeEEEEeCCCccccccEEEEecCCCcch-hccCCeeEEEEEeEeecCCCEEEEEecC
Q psy2946 326 IYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPGPSLLHHLLALSFATTESE-ILEQNIVGFVCVTHVDMLRQSLSVLCLQ 404 (455)
Q Consensus 326 ~~~~~~~~~p~~~lp~g~~~~~~~~~~~~~~~~~~l~~~i~Av~~~~~~~~-~~~~~~~Gf~~V~~vd~~~~~i~vltP~ 404 (455)
+||++++.+|+|+||.|++.+.+.+++..++++.+|.|+++|++.+...++ +..++++||++|++||.++++|++|+|+
T Consensus 318 v~riga~~~p~S~lp~g~~~e~~~~k~~~vt~~~~l~h~vLAiS~A~~~ed~Vi~S~V~Gfv~VteVd~~~~kit~lsP~ 397 (415)
T KOG2749|consen 318 VYRIGAPQAPDSCLPLGMTRENNQLKLVPVTITERLQHHVLAISFAEEPEDNVIKSPVAGFVLVTEVDLEKRKITVLSPV 397 (415)
T ss_pred EEEecCCCCCccccccccccccCceEEEecccCHHHheeeEEEEecccchhhhhcCcceeEEEEEeccchheeEEEecCC
Confidence 999999999999999999999999999999999999999999999998655 9999999999999999999999999999
Q ss_pred CCCCCCceEEeecccchh
Q psy2946 405 ARPLPCSKLILTDIQYMD 422 (455)
Q Consensus 405 ~~~lp~~~lv~g~~~~~~ 422 (455)
|++||+++||+|+++|+|
T Consensus 398 p~~LPsk~Li~g~l~~~e 415 (415)
T KOG2749|consen 398 PRTLPSKALILGDLKWLE 415 (415)
T ss_pred CCCCCcceEEeeeeeecC
Confidence 999999999999999986
No 2
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-64 Score=473.57 Aligned_cols=401 Identities=30% Similarity=0.528 Sum_probs=351.8
Q ss_pred eEEEeCCCCeEEEEEe-CceEEEEEEeeEEEEeceeccCCCeEEecCCceEEEEeccCcEEEEEeeccceeeeecCCcch
Q psy2946 9 QTFELKQDQELRFEVE-NAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSITMKNARKNMTYVSKETPMN 87 (455)
Q Consensus 9 ~~~~l~~~~e~r~e~~-~~~~~i~l~~G~aei~G~el~~~~~~~~~~~~~~~i~t~~g~~i~i~g~~~~~~y~~~~t~ml 87 (455)
.++.|++++|||||+. .+.++|+|++|.|||||+||+.+.||.| .+.|.+||||+||+++++| .+...|.++.+||.
T Consensus 2 ~ei~ipk~~ewriev~e~~kl~v~vvSG~aEifGtELa~~~~Y~F-~n~K~~Iyt~~gc~L~veg-~~~~~yv~~~tpm~ 79 (424)
T COG5623 2 MEIRIPKNQEWRIEVNETQKLKVMVVSGLAEIFGTELANERWYAF-RNTKTFIYTFSGCKLKVEG-ACDLQYVSDTTPMP 79 (424)
T ss_pred ceeEcCCCCeeEEEeCCCccEEEEEeecchhhhchhhccCCceee-eeeeeeEEEEeccEEEEec-CccceeeecCcchh
Confidence 4678999999999999 7899999999999999999999999999 8899999999999999999 99999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc
Q psy2946 88 YYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI 167 (455)
Q Consensus 88 ~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~ 167 (455)
.+.|+|+.+++.|. .+. ..|++|+|+|++.+||||++++|.+++++. +++|+|+++||.|.-..+||++++...
T Consensus 80 ~i~Nlhf~lek~rm--~n~-e~gp~v~vvGgsq~Gkts~~~tL~syalk~---~~~pl~~nlDP~Qp~~~~PG~iSa~h~ 153 (424)
T COG5623 80 LIFNLHFFLEKRRM--FNY-EKGPTVMVVGGSQNGKTSFCFTLISYALKL---GKKPLFTNLDPSQPGNIFPGAISAIHV 153 (424)
T ss_pred hhhhHHHHHHhhcc--ccc-ccCCEEEEECCCcCCceeHHHHHHHHHHHh---cCCceEEecCCCCcccccCccccccch
Confidence 99999999999762 222 479999999999999999999999999999 999999999999999999999998877
Q ss_pred ccccccCCCC------------cccCceEEEecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCcc-
Q psy2946 168 ERPATIEDGF------------SQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIK- 234 (455)
Q Consensus 168 ~~~~~~~~~~------------~~q~p~~~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~- 234 (455)
+..++...+. ..++|+++.||..++.||..+|.....++.+.+..++...+..+.+++++|||....
T Consensus 154 ~~ilD~q~~~wGqSltsGaTll~~K~Plv~nfGl~~i~eN~~LY~l~~s~L~~aV~~r~hl~~d~r~sgC~vdTpSIsql 233 (424)
T COG5623 154 DAILDCQEGLWGQSLTSGATLLRLKNPLVFNFGLTEITENMELYDLQTSKLQEAVKARNHLVEDLRLSGCPVDTPSISQL 233 (424)
T ss_pred hhhhhhhcccccccccccchhhhccCceEEecccCccccCHHHHHHHHHHHHHHHHhhhccCccceeecCccCCcchhhh
Confidence 6655433332 346899999999999999999999999999999999999999999999999987432
Q ss_pred CCcHH-HHHHHHHHcCCCEEEEecCchhhHHHHhhCCC--ceEEEEeCCCCCcccCCHHHHHHHHHHHHHHhccCCCCCC
Q psy2946 235 GDGFK-CLMACAKSLRVDNILVLDQERLYNELIRELPK--SYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSRLKP 311 (455)
Q Consensus 235 s~G~~-q~~~ia~al~~~~~vll~DEpl~~~l~~~l~~--~~~v~~l~~s~g~~~r~~~~~~~~r~~~i~~YF~g~~~~~ 311 (455)
..-.. ..-.|+.-|..|-.+++++||+++.+.+.+.+ .-+|+.+++++|++.++....+.++...|++||||..+++
T Consensus 234 dEnla~~~htiI~~f~vnivvVlgsErLy~s~k~~~~~~~~n~iffiskldG~~~ve~e~~rslQrrsI~~YFyGs~~~~ 313 (424)
T COG5623 234 DENLAAFYHTIIKRFEVNIVVVLGSERLYHSLKVIAEKLMINRIFFISKLDGFVEVEKEVGRSLQRRSISRYFYGSVNNE 313 (424)
T ss_pred hHHHHHHHHHHHHheeeeEEEEEcchHHHHHHHHHHhHHhhhheeeecccCCeeehHHHHHHHHHHhHHHHHhcccCCCc
Confidence 22233 33349999999999999999999999877643 2368999999999999999999999999999999988889
Q ss_pred CCceeEEEEeccEEEEEecCCCCCCccCcCCCccccceeEEEEeCCC--ccccccEEEEecCCCcch---hccCCeeEEE
Q psy2946 312 FNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPG--PSLLHHLLALSFATTESE---ILEQNIVGFV 386 (455)
Q Consensus 312 l~p~~~~v~~~~~~~~~~~~~~~p~~~lp~g~~~~~~~~~~~~~~~~--~~l~~~i~Av~~~~~~~~---~~~~~~~Gf~ 386 (455)
|+|+.+.++..++.+++..-...+-+.+|.|... ++..+.-+ .-+.|+|+|++.+.+.++ +..++++||+
T Consensus 314 lsP~t~~Vdy~~lvv~~~e~~~~nvs~~~~G~~e-----~~~~v~t~~~~vlqnsIlais~a~e~eDqATV~~SpIlGyv 388 (424)
T COG5623 314 LSPFTFNVDYKWLVVRIGEMYVANVSALPLGSTE-----KVGCVETSDVEVLQNSILAISEAREIEDQATVAGSPILGYV 388 (424)
T ss_pred cCceEEeecceEEEEEEeecccCcccccccccee-----eeeeEecccHHHhhhheeeeehhhhccccceecCCceeEEE
Confidence 9999999999999999864446678888888642 22222222 347999999999988666 7789999999
Q ss_pred EEeEeecCCCEEEEEecCCCCCCCceEEeecccchh
Q psy2946 387 CVTHVDMLRQSLSVLCLQARPLPCSKLILTDIQYMD 422 (455)
Q Consensus 387 ~V~~vd~~~~~i~vltP~~~~lp~~~lv~g~~~~~~ 422 (455)
+|.+||.-|+++++|+|+|++||+++||+|+++|.|
T Consensus 389 ~v~~v~~~krklriL~pvP~~lps~alI~g~~k~~E 424 (424)
T COG5623 389 VVINVGAFKRKLRILCPVPRLLPSTALIQGDLKHVE 424 (424)
T ss_pred EEEEchhhhhceeEeccCCCCCCcceeeeecccccC
Confidence 999999999999999999999999999999999975
No 3
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=99.98 E-value=4.3e-30 Score=254.05 Aligned_cols=347 Identities=22% Similarity=0.288 Sum_probs=241.6
Q ss_pred CceEEEEEEeeEEEEeceeccCCCeEEecCCceEEEEeccCcEEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHH
Q psy2946 25 NAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAE 104 (455)
Q Consensus 25 ~~~~~i~l~~G~aei~G~el~~~~~~~~~~~~~~~i~t~~g~~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~ 104 (455)
.++.++.+..|.++|.|.....|..|.....+.+..- .+++.. +-+ + -..++....+. ..
T Consensus 8 ~~~~~~~v~~g~vri~~~~~~~~~~~~~~~~r~~~~~-----~ve~P~------d~~--~---~~e~i~~~~~~----~~ 67 (398)
T COG1341 8 EGPGALLVAPGAVRILGLREVEGGALSVARVRTTYHQ-----LVEVPE------DRS--E---PLEEIADTWES----KS 67 (398)
T ss_pred cCccceEeeCCeEEEeeeeEecCCcceeeeecceecc-----cccCch------Hhh--h---HHHHHhhcccc----cc
Confidence 4899999999999999999999888766333222111 111111 000 0 01111111111 00
Q ss_pred hccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceE
Q psy2946 105 QQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIV 184 (455)
Q Consensus 105 ~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~ 184 (455)
.....-.+++|+||.+||||||.++|+|.+... |+++.++|+||||.++.+||++++..+..+......+.+-..
T Consensus 68 ~~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~r---G~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~-- 142 (398)
T COG1341 68 ESAGKVGVVMVVGPVDSGKSTLTTYLANKLLAR---GRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTL-- 142 (398)
T ss_pred hhccCCcEEEEECCcCcCHHHHHHHHHHHHhhc---CceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccce--
Confidence 011455799999999999999999999999988 999999999999999999999999887776554333444444
Q ss_pred EEecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccC-CcHHHHHHHHHHcCCCEEEEecCchhhH
Q psy2946 185 YNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKG-DGFKCLMACAKSLRVDNILVLDQERLYN 263 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s-~G~~q~~~ia~al~~~~~vll~DEpl~~ 263 (455)
+|+|..||..++..|...+.++.+...+. ..-.+|||+||+.+ .|++.+.+++++..++.++.+.++....
T Consensus 143 ~FvG~isP~~~~~~~i~~v~rL~~~a~~~--------~~~ilIdT~GWi~G~~g~elk~~li~~ikP~~Ii~l~~~~~~~ 214 (398)
T COG1341 143 YFVGSISPQGFPGRYIAGVARLVDLAKKE--------ADFILIDTDGWIKGWGGLELKRALIDAIKPDLIIALERANELS 214 (398)
T ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhcc--------CCEEEEcCCCceeCchHHHHHHHHHhhcCCCEEEEeccccccc
Confidence 89999999999999999998888776543 23469999999999 8999999999999999999999998877
Q ss_pred HHHhhCCCceEEEEeCCCCCcccCCHHHHHHHHHHHHHHhccCCCCCCCCceeEEEEeccEEEEEe---cCCCCCC----
Q psy2946 264 ELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSRLKPFNPHSFDIKFGEVQIYKI---GAPVLPD---- 336 (455)
Q Consensus 264 ~l~~~l~~~~~v~~l~~s~g~~~r~~~~~~~~r~~~i~~YF~g~~~~~l~p~~~~v~~~~~~~~~~---~~~~~p~---- 336 (455)
.+.+.+...+. +..+..+..+++.+|+..|++.|++||++... .+++++++.+... ..+.++.
T Consensus 215 ~l~~~~~~~~~---~~~~~~~~~~sR~ER~~~R~e~~~ryf~~~~~-------~~v~~~~~~i~g~~if~~~~i~~~~~~ 284 (398)
T COG1341 215 PLLEGVESIVY---LKVPDAVAPRSREERKELREEKYRRYFEGSKI-------RTVDLDDVRIQGTPIFQGEPIDDEEEK 284 (398)
T ss_pred hhhhcccCceE---EeccccccccChhHHHHHHHHHHHHhccCCce-------EEecchhceeecccccCCCccchhHHH
Confidence 77766644332 44456778899999999999999999998643 2444444443321 1111110
Q ss_pred -------------ccCcCCCc---cccc--eeEE----EEeCCCccccccEEEEecCCCcchhccCCeeEEEEEeEeecC
Q psy2946 337 -------------SCMPLGVT---ATEF--LTKV----VLVQPGPSLLHHLLALSFATTESEILEQNIVGFVCVTHVDML 394 (455)
Q Consensus 337 -------------~~lp~g~~---~~~~--~~~~----~~~~~~~~l~~~i~Av~~~~~~~~~~~~~~~Gf~~V~~vd~~ 394 (455)
..++.+.. .... ...+ ..+-+...+.|.++|+...+ ..|+|+++|+.||..
T Consensus 285 ~l~~~i~~~~l~~~~~~~~~~~V~~d~~~~~r~~~~~~~~~v~~~~l~gll~gl~d~~-------~~~iGlGvl~~Id~~ 357 (398)
T COG1341 285 LLEKLIKKGILHAEKCGGRPYVVKSDLEEGPRLVSGNDVRVVPSEELKGLLVGLIDND-------GFCIGLGVLRRIDFK 357 (398)
T ss_pred hhhhhhhhccccceecCCceEEEeecccccceeecCCcEEEEChhHhccceEEEecCC-------CcEEEEEEEEEeecc
Confidence 00000000 0000 0000 01122345777888887653 469999999999999
Q ss_pred CCEEEEEecCCCCCC-CceEEeecccchh
Q psy2946 395 RQSLSVLCLQARPLP-CSKLILTDIQYMD 422 (455)
Q Consensus 395 ~~~i~vltP~~~~lp-~~~lv~g~~~~~~ 422 (455)
+++++|+||+. +.+ .+.+++|.+|.-+
T Consensus 358 ~~~~~i~t~~~-~~~~i~~i~~Gr~rlde 385 (398)
T COG1341 358 ENELTIYTRVD-DIGEIREIRLGRIRLDE 385 (398)
T ss_pred CceEEEEeccc-ccCceEEEEEEEEEecc
Confidence 99999999994 444 7789999988543
No 4
>PF06807 Clp1: Pre-mRNA cleavage complex II protein Clp1; InterPro: IPR010655 This entry consists of several pre-mRNA cleavage complex II Clp1 (or HeaB) proteins. Six different protein factors are required in vitro for 3' end formation of mammalian pre-mRNAs by endonucleolytic cleavage and polyadenylation. Clp1 is a subunit of cleavage complex IIA, which is required for cleavage, but not for polyadenylation of pre-mRNA []. This entry also includes nucleolar proteins [].; PDB: 2NPI_A.
Probab=99.97 E-value=4.4e-30 Score=238.75 Aligned_cols=185 Identities=36% Similarity=0.652 Sum_probs=121.8
Q ss_pred CCccCCcHHHHHHHHHHcCCCEEEEe-cC-chhhHHHHhhCCCc-----eEEEEeCCCCCcccCCHHHHHHHHHHHHHHh
Q psy2946 231 GWIKGDGFKCLMACAKSLRVDNILVL-DQ-ERLYNELIRELPKS-----YDVVLLPKSGGVVDRSRQFRAEARDKRIKEY 303 (455)
Q Consensus 231 g~~~s~G~~q~~~ia~al~~~~~vll-~D-Epl~~~l~~~l~~~-----~~v~~l~~s~g~~~r~~~~~~~~r~~~i~~Y 303 (455)
||++|.|.+.+.++++++.++++|+| .+ |.+++++.+.++.. ++++++++++|+..+++..++++|++++++|
T Consensus 1 GWvkG~G~~lL~~ii~~~~pt~vv~l~~~~~~~~~~l~~~~~~~~~~~~v~vv~l~~s~g~~~~~~~~~~~~R~~~i~~Y 80 (195)
T PF06807_consen 1 GWVKGLGLELLSHIIRAFEPTHVVVLSGSPERLYPDLKRDLPNKKSGWTVNVVKLPKSGGVVERSKLFARDLRELRIRSY 80 (195)
T ss_dssp --------HHHHHHHHHTT--EEEEE--SS-CHHHHHHHHHHHHH---GGGEEEE---TT-----HHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhCCCCEEEEECCCchhhhhhhhHhhhcccccceEEEEEecCCCCCcccCHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999 65 88888888776433 7899999999999999999999999999999
Q ss_pred ccCCCCCCCCceeEEEEeccEEEEEecCCCCCCccCcCCCccccceeEEEEeCCCccccccEEEEec-CCCcchhccCCe
Q psy2946 304 FYGSRLKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPGPSLLHHLLALSF-ATTESEILEQNI 382 (455)
Q Consensus 304 F~g~~~~~l~p~~~~v~~~~~~~~~~~~~~~p~~~lp~g~~~~~~~~~~~~~~~~~~l~~~i~Av~~-~~~~~~~~~~~~ 382 (455)
|||....+++|++..++|+++++|++ ..+.+++|.|...+. .+......|+|+|+||+. ....+++..++|
T Consensus 81 F~~~~~~~l~p~~~~~~l~~~~p~~v---~~~~~~l~~~~~~~~-----~~~~i~~~L~~sival~~~~~~~~~~~~~~~ 152 (195)
T PF06807_consen 81 FYGCQRNPLSPHSFTVPLSDLTPYRV---PFPDSALPIGMHSDV-----PPSHILAALNGSIVALCSPASSPEDPLDSNC 152 (195)
T ss_dssp HH--TTT-B--EEEEEECCC-EEEEE---CCCCT---T---S-E-----EE---HHHHTTEEEEEESS-TT--HHTTS-E
T ss_pred HhhccccCCCCcccccchhHCcEEEe---ecccccccccccccc-----CHHHHHHHhhhcEEEEEecccCCCCcccCee
Confidence 99987778999999999999999998 467888888654332 233336788999999999 666777888999
Q ss_pred eEEEEEeEeecCCCEEEEEecCCCC-C-CCceEEeecccchhc
Q psy2946 383 VGFVCVTHVDMLRQSLSVLCLQARP-L-PCSKLILTDIQYMDR 423 (455)
Q Consensus 383 ~Gf~~V~~vd~~~~~i~vltP~~~~-l-p~~~lv~g~~~~~~~ 423 (455)
+|||+|++||+++++++||||+|++ | |+++|++|+++|+++
T Consensus 153 ~G~~~Vr~VD~~~~~l~iLtP~p~~~L~~~~~Lv~g~i~~p~~ 195 (195)
T PF06807_consen 153 LGFGIVRSVDEEKRKLYILTPVPGERLEPVNVLVLGSIELPDC 195 (195)
T ss_dssp EEEEEEEEEETTTTEEEEEESSSS------SEEEEEE------
T ss_pred EEEEEEEEEECCCCEEEEEcCCChhhcCCCCEEEEcCCcccCC
Confidence 9999999999999999999999997 9 899999999999874
No 5
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=4e-27 Score=214.22 Aligned_cols=150 Identities=21% Similarity=0.154 Sum_probs=118.2
Q ss_pred chhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCe
Q psy2946 86 MNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGT 161 (455)
Q Consensus 86 ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~ 161 (455)
|+++.|+++.|++ ..+++++ .+|++++||||+|||||||+|+|.++..++ +|+|.++|.
T Consensus 2 mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---------------~G~I~i~g~ 64 (240)
T COG1126 2 MIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---------------SGSITVDGE 64 (240)
T ss_pred eEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---------------CceEEECCE
Confidence 5666777777775 4455554 899999999999999999999999998776 999999997
Q ss_pred eeccc-cccccccCCCCcccCceEEEecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCC
Q psy2946 162 IGALV-IERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGW 232 (455)
Q Consensus 162 ~~~~~-~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~ 232 (455)
..... .-..++...|++||+. .+|+|+|+.+|+.+....+ ++.+..++++++...+. |..+.
T Consensus 65 ~~~~~~~~~~~R~~vGmVFQ~f--nLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka-------~~yP~ 135 (240)
T COG1126 65 DVGDKKDILKLRRKVGMVFQQF--NLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKA-------DAYPA 135 (240)
T ss_pred eccchhhHHHHHHhcCeecccc--cccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhh-------hhCcc
Confidence 54322 1234567899999999 9999999999998865432 34555666666655443 33445
Q ss_pred ccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 233 IKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 233 ~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.+|+||+||++|||||+.+|+++++|||+
T Consensus 136 qLSGGQqQRVAIARALaM~P~vmLFDEPT 164 (240)
T COG1126 136 QLSGGQQQRVAIARALAMDPKVMLFDEPT 164 (240)
T ss_pred ccCcHHHHHHHHHHHHcCCCCEEeecCCc
Confidence 66779999999999999999999999996
No 6
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4e-25 Score=200.43 Aligned_cols=194 Identities=18% Similarity=0.182 Sum_probs=133.3
Q ss_pred hhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCee
Q psy2946 87 NYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTI 162 (455)
Q Consensus 87 l~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~ 162 (455)
+++.|+++.|++ +.+++++ +++.+++++||+|||||||+|+|..+.... ...-+ .|+|.+.|..
T Consensus 8 ~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~---~~~r~-------~G~v~~~g~n 75 (253)
T COG1117 8 IEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLI---PGARV-------EGEVLLDGKN 75 (253)
T ss_pred eEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccC---cCceE-------EEEEEECCee
Confidence 444455555554 4455553 789999999999999999999999885433 11111 5999999998
Q ss_pred ecccccc--ccccCCCCcccCceEEEecCCCcccCHHHHHHHHHHH-------HHHHHHhhccCCCCCcccEEEecCCCc
Q psy2946 163 GALVIER--PATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERL-------WKSVDERMNKDSKTNSSGMIINTCGWI 233 (455)
Q Consensus 163 ~~~~~~~--~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~~l-------~~~~~~~~~~~~~~~~s~~iint~g~~ 233 (455)
+.....+ .++..+|++||.| .-|+ +|+.||+.+..+..... .+..++......+. ..-++.++..
T Consensus 76 i~~~~~d~~~lRr~vGMVFQkP--nPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEV---KDrL~~sa~~ 149 (253)
T COG1117 76 IYDPKVDVVELRRRVGMVFQKP--NPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEV---KDRLHKSALG 149 (253)
T ss_pred ccCCCCCHHHHHHHheeeccCC--CCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHh---HHHhhCCccC
Confidence 7665322 4567789999998 7787 79999999987664221 11111111111110 1112345566
Q ss_pred cCCcHHHHHHHHHHcCCCEEEEecCchh----------hHHHHhhCCCceEEEEeCCCCCcccCCHHHHHHHHHHHHHHh
Q psy2946 234 KGDGFKCLMACAKSLRVDNILVLDQERL----------YNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEY 303 (455)
Q Consensus 234 ~s~G~~q~~~ia~al~~~~~vll~DEpl----------~~~l~~~l~~~~~v~~l~~s~g~~~r~~~~~~~~r~~~i~~Y 303 (455)
+|+||+||++||||++.+|.|+|+|||. .++|...++..++|+.+. +...+..|-..+-.|
T Consensus 150 LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVT---------HnmqQAaRvSD~taF 220 (253)
T COG1117 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVT---------HNMQQAARVSDYTAF 220 (253)
T ss_pred CChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEe---------CCHHHHHHHhHhhhh
Confidence 7779999999999999999999999995 345556667778888764 344556677788888
Q ss_pred ccCC
Q psy2946 304 FYGS 307 (455)
Q Consensus 304 F~g~ 307 (455)
|+..
T Consensus 221 f~~G 224 (253)
T COG1117 221 FYLG 224 (253)
T ss_pred hccc
Confidence 8854
No 7
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=1.1e-25 Score=207.86 Aligned_cols=204 Identities=20% Similarity=0.201 Sum_probs=147.1
Q ss_pred CcchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCC
Q psy2946 84 TPMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVP 159 (455)
Q Consensus 84 t~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~ 159 (455)
++.+++.++++.|++ ..+++++ ++|++++|+|++|||||||+|+|.|++.|+ +|+|.+.
T Consensus 6 ~~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---------------~GeI~i~ 68 (263)
T COG1127 6 EPLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---------------KGEILID 68 (263)
T ss_pred cceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---------------CCeEEEc
Confidence 345566666666655 3344443 899999999999999999999999998887 9999999
Q ss_pred Ceeecccccc---ccccCCCCcccCceEEEecCCCcccCHHHHHHHHHHHHHH-----HHHhhccCCCCCcccEEEecCC
Q psy2946 160 GTIGALVIER---PATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKS-----VDERMNKDSKTNSSGMIINTCG 231 (455)
Q Consensus 160 G~~~~~~~~~---~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~~l~~~-----~~~~~~~~~~~~~s~~iint~g 231 (455)
|.......+. .++.+.|++||.. .+|.++|+.||+.+.+....++-+. ...+++ ...+.+.+.+..+
T Consensus 69 G~~i~~ls~~~~~~ir~r~GvlFQ~g--ALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~---~VGL~~~~~~~~P 143 (263)
T COG1127 69 GEDIPQLSEEELYEIRKRMGVLFQQG--ALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLE---LVGLRGAAADLYP 143 (263)
T ss_pred CcchhccCHHHHHHHHhheeEEeecc--ccccccchhHhhheehHhhccCCHHHHHHHHHHHHH---hcCCChhhhhhCc
Confidence 9976655443 3456789999998 8999999999999977654322211 122221 1344555566777
Q ss_pred CccCCcHHHHHHHHHHcCCCEEEEecCchh----------hHHHHh----hCCCce---------------EEEEeCCCC
Q psy2946 232 WIKGDGFKCLMACAKSLRVDNILVLDQERL----------YNELIR----ELPKSY---------------DVVLLPKSG 282 (455)
Q Consensus 232 ~~~s~G~~q~~~ia~al~~~~~vll~DEpl----------~~~l~~----~l~~~~---------------~v~~l~~s~ 282 (455)
..+|+||++|+++|||++.||.++++|||+ +++|.+ .+..++ +++.+..-.
T Consensus 144 sELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gk 223 (263)
T COG1127 144 SELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGK 223 (263)
T ss_pred hhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCE
Confidence 788889999999999999999999999995 333333 332111 333333222
Q ss_pred CcccCCHHHHHHHHHHHHHHhccCCCC
Q psy2946 283 GVVDRSRQFRAEARDKRIKEYFYGSRL 309 (455)
Q Consensus 283 g~~~r~~~~~~~~r~~~i~~YF~g~~~ 309 (455)
-....+.++....-+..+++||+|.+.
T Consensus 224 v~~~Gt~~el~~sd~P~v~qf~~G~~~ 250 (263)
T COG1127 224 VIAEGTPEELLASDDPWVRQFFNGIRD 250 (263)
T ss_pred EEEeCCHHHHHhCCCHHHHHHhcCCCC
Confidence 344567788888889999999999765
No 8
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.3e-25 Score=221.31 Aligned_cols=148 Identities=18% Similarity=0.170 Sum_probs=113.3
Q ss_pred hhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCee
Q psy2946 87 NYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTI 162 (455)
Q Consensus 87 l~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~ 162 (455)
+++.|+++.|++.. ++++. .+|++++++||||||||||+|+|+|+..++ +|+|.++|..
T Consensus 4 i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---------------~G~I~i~g~~ 66 (338)
T COG3839 4 LELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---------------SGEILIDGRD 66 (338)
T ss_pred EEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCEE
Confidence 44455555555421 33332 799999999999999999999999997666 9999999998
Q ss_pred eccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHHH-------HHHHHHHHhhccCCCCCcccEEEecCCCccC
Q psy2946 163 GALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVE-------RLWKSVDERMNKDSKTNSSGMIINTCGWIKG 235 (455)
Q Consensus 163 ~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~-------~l~~~~~~~~~~~~~~~~s~~iint~g~~~s 235 (455)
.... .|....++++||+. .+|+++||++|+.|.++..+ +..+++.+.++.. -..|..+..+|
T Consensus 67 vt~l--~P~~R~iamVFQ~y--ALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~-------~lL~r~P~~LS 135 (338)
T COG3839 67 VTDL--PPEKRGIAMVFQNY--ALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE-------HLLNRKPLQLS 135 (338)
T ss_pred CCCC--ChhHCCEEEEeCCc--cccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCCh-------hHHhcCcccCC
Confidence 6653 35567789999999 99999999999999987642 2233333333322 23345556677
Q ss_pred CcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 236 DGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 236 ~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
+||+||+++|||+..+|.++++|||+.
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlS 162 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLS 162 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchh
Confidence 799999999999999999999999985
No 9
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.90 E-value=4.9e-25 Score=218.36 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=112.4
Q ss_pred hhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCee
Q psy2946 87 NYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTI 162 (455)
Q Consensus 87 l~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~ 162 (455)
+++.|+++.|++ ..+++++ .+||++.++|||||||||++|+|+|+..++ +|+|.++|..
T Consensus 6 l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---------------~G~I~l~G~~ 68 (352)
T COG3842 6 LEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---------------SGEILLDGED 68 (352)
T ss_pred EEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCEE
Confidence 444455555552 3333332 799999999999999999999999997766 9999999998
Q ss_pred eccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCcc
Q psy2946 163 GALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIK 234 (455)
Q Consensus 163 ~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~ 234 (455)
+.... +....++++||+. .+|+|+||.+|+.|.+... .+...++.+.++..... +-....+
T Consensus 69 i~~lp--p~kR~ig~VFQ~Y--ALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~-------~R~p~qL 137 (352)
T COG3842 69 ITDVP--PEKRPIGMVFQSY--ALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA-------DRKPHQL 137 (352)
T ss_pred CCCCC--hhhcccceeecCc--ccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh-------hhChhhh
Confidence 77643 4456789999999 9999999999999998832 22344444444433221 2233455
Q ss_pred CCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 235 GDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 235 s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
|+||+||++|||||..+|.++++|||+.
T Consensus 138 SGGQqQRVALARAL~~~P~vLLLDEPlS 165 (352)
T COG3842 138 SGGQQQRVALARALVPEPKVLLLDEPLS 165 (352)
T ss_pred ChHHHHHHHHHHHhhcCcchhhhcCccc
Confidence 6699999999999999999999999973
No 10
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.90 E-value=1.5e-24 Score=201.38 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=124.5
Q ss_pred chhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCe
Q psy2946 86 MNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGT 161 (455)
Q Consensus 86 ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~ 161 (455)
|+++.|+++.|.+ ..+.++. ++|++++++||+||||||++|+|.++..++ +|+|.++|.
T Consensus 1 MI~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---------------~G~I~i~g~ 63 (309)
T COG1125 1 MIEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---------------SGEILIDGE 63 (309)
T ss_pred CceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---------------CceEEECCe
Confidence 5677888888875 4455543 899999999999999999999999997766 999999999
Q ss_pred eeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCcc
Q psy2946 162 IGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIK 234 (455)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~ 234 (455)
.+.......++..+||+.|.- .+|+|+|+.+|+.+...+ ++..++++...++.++. ...+-.++.+
T Consensus 64 ~i~~~d~~~LRr~IGYviQqi--gLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~-----~~~~RyP~eL 136 (309)
T COG1125 64 DISDLDPVELRRKIGYVIQQI--GLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPS-----EYADRYPHEL 136 (309)
T ss_pred ecccCCHHHHHHhhhhhhhhc--ccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHH-----HHhhcCchhc
Confidence 877766667888999999988 899999999999987654 33445566666655432 1234566778
Q ss_pred CCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 235 GDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 235 s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
|+||+||+.+||||+.+|.++++||||
T Consensus 137 SGGQQQRVGv~RALAadP~ilLMDEPF 163 (309)
T COG1125 137 SGGQQQRVGVARALAADPPILLMDEPF 163 (309)
T ss_pred CcchhhHHHHHHHHhcCCCeEeecCCc
Confidence 889999999999999999999999996
No 11
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.2e-24 Score=203.33 Aligned_cols=126 Identities=21% Similarity=0.179 Sum_probs=102.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+||+|+|+||+|||||||+|+|+|+..++ +|+|.+.|..... .....+|+||++ .++
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p~---------------~G~V~~~g~~v~~-----p~~~~~~vFQ~~--~Ll 84 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPT---------------SGEVLLDGRPVTG-----PGPDIGYVFQED--ALL 84 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCcccCC-----CCCCEEEEeccC--ccc
Confidence 699999999999999999999999997766 9999999986522 123578999999 899
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+..|+.+|+.+.+... ...+..+.+.++... .-|..++.+|+||+||++|||||+.+|+++++|||
T Consensus 85 PW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~-------~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEP 157 (248)
T COG1116 85 PWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAG-------FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEP 157 (248)
T ss_pred chhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcc-------hhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999999988763 223444555554332 23556788888999999999999999999999999
Q ss_pred hh
Q psy2946 261 LY 262 (455)
Q Consensus 261 l~ 262 (455)
|.
T Consensus 158 Fg 159 (248)
T COG1116 158 FG 159 (248)
T ss_pred cc
Confidence 73
No 12
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.3e-23 Score=200.08 Aligned_cols=150 Identities=19% Similarity=0.165 Sum_probs=113.5
Q ss_pred chhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCe
Q psy2946 86 MNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGT 161 (455)
Q Consensus 86 ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~ 161 (455)
|+.+.|+++.|+.. .+++++ +.|+.++++||||||||||+|+|+|+..++ +|.|.++|.
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---------------~G~I~~~~~ 64 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---------------AGRIRLNGR 64 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---------------CceEEECCE
Confidence 45666777777652 333332 899999999999999999999999998877 999999999
Q ss_pred eeccccc-cccccCCCCcccCceEEEecCCCcccCHHHHHHHH---------HHHHHHHHHhhccCCCCCcccEEEecCC
Q psy2946 162 IGALVIE-RPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV---------ERLWKSVDERMNKDSKTNSSGMIINTCG 231 (455)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~---------~~l~~~~~~~~~~~~~~~~s~~iint~g 231 (455)
....... ......+||+||+. .+|.++|+.+|+.|.+... +..+.++.+.++..... +..+
T Consensus 65 ~l~D~~~~~~~~R~VGfvFQ~Y--ALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la-------~ryP 135 (345)
T COG1118 65 VLFDVSNLAVRDRKVGFVFQHY--ALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA-------DRYP 135 (345)
T ss_pred eccchhccchhhcceeEEEech--hhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchh-------hcCc
Confidence 4333222 23456789999999 7999999999999988442 33344444444433221 2334
Q ss_pred CccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 232 WIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 232 ~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
..+|+||+||+++|||++..|.++++|||+
T Consensus 136 ~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 136 AQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred hhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 556679999999999999999999999997
No 13
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.88 E-value=1.3e-23 Score=187.34 Aligned_cols=151 Identities=19% Similarity=0.156 Sum_probs=120.9
Q ss_pred chhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCe
Q psy2946 86 MNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGT 161 (455)
Q Consensus 86 ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~ 161 (455)
|+.+.|+++.|... ..+++++ ++|+++.|+||+|||||||+|+|++...++ .|+|.++|+
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---------------~G~i~~~~~ 64 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---------------RGKILVNGH 64 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---------------CceEEECCe
Confidence 56778899999876 5577665 899999999999999999999999998877 999999999
Q ss_pred eeccccccc---cccCCCCcccCceEEEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCC
Q psy2946 162 IGALVIERP---ATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCG 231 (455)
Q Consensus 162 ~~~~~~~~~---~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g 231 (455)
.......+. ++..+|++||+. .+..+.|+.||+++.+... ++......+.++...+... .+
T Consensus 65 dl~~l~~~~iP~LRR~IGvVFQD~--rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~-------lP 135 (223)
T COG2884 65 DLSRLKGREIPFLRRQIGVVFQDF--RLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARA-------LP 135 (223)
T ss_pred ecccccccccchhhheeeeEeeec--cccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhc-------Cc
Confidence 776654442 467789999998 8999999999999987664 3334444445444333222 23
Q ss_pred CccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 232 WIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 232 ~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
..+|+|++||++||||+..+|.++|.|||+
T Consensus 136 ~~LSGGEQQRvaIARAiV~~P~vLlADEPT 165 (223)
T COG2884 136 SQLSGGEQQRVAIARAIVNQPAVLLADEPT 165 (223)
T ss_pred cccCchHHHHHHHHHHHccCCCeEeecCCC
Confidence 455669999999999999999999999996
No 14
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.86 E-value=1.1e-23 Score=196.52 Aligned_cols=131 Identities=23% Similarity=0.197 Sum_probs=102.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc----ccccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER----PATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~----~~~~~~~~~~q~p~ 183 (455)
++|++++|+||+|||||||+++|.++..++ +|.+.++|........+ ..+..+||+||+.
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---------------~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~- 92 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---------------SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNF- 92 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCC---------------CceEEECCEEcCcCCHHHHHHHHHHhEEEECccC-
Confidence 699999999999999999999999998776 89999999765544332 2345689999999
Q ss_pred EEEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 184 VYNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.+++++|+.||+.+.+... .+.++.+.+.++.. ....+.....+|+||+||++|||||+.+|.+++
T Consensus 93 -nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~------~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iil 165 (226)
T COG1136 93 -NLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLE------DRLLKKKPSELSGGQQQRVAIARALINNPKIIL 165 (226)
T ss_pred -CCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCCh------hhhccCCchhcCHHHHHHHHHHHHHhcCCCeEE
Confidence 9999999999999755432 22333444443332 122234556677799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
.|||+
T Consensus 166 ADEPT 170 (226)
T COG1136 166 ADEPT 170 (226)
T ss_pred eeCcc
Confidence 99996
No 15
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.6e-22 Score=193.22 Aligned_cols=130 Identities=20% Similarity=0.107 Sum_probs=105.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc---ccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER---PATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~---~~~~~~~~~~q~p~~ 184 (455)
++|++++|+|.+|||||||+|++.++..|+ +|+|.++|..+...... ..+..+||+||.+
T Consensus 30 ~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---------------sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhF-- 92 (339)
T COG1135 30 PKGEIFGIIGYSGAGKSTLLRLINLLERPT---------------SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHF-- 92 (339)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHhccCCCC---------------CceEEEcCEecccCChHHHHHHHhhccEEeccc--
Confidence 799999999999999999999999998777 99999999877665444 3567899999999
Q ss_pred EEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 185 YNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
.++...|+.+|+.+.++.. +....++.+.++..++. +..+-.+|+|||||++|||||+.+|+|++.
T Consensus 93 nLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~-------~~yP~qLSGGQKQRVaIARALa~~P~iLL~ 165 (339)
T COG1135 93 NLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKA-------DRYPAQLSGGQKQRVAIARALANNPKILLC 165 (339)
T ss_pred cccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhh-------ccCchhcCcchhhHHHHHHHHhcCCCEEEe
Confidence 8999999999999988763 23344445555544332 233445677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
||++
T Consensus 166 DEaT 169 (339)
T COG1135 166 DEAT 169 (339)
T ss_pred cCcc
Confidence 9984
No 16
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.85 E-value=8.3e-23 Score=183.77 Aligned_cols=150 Identities=18% Similarity=0.155 Sum_probs=111.5
Q ss_pred chhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCe
Q psy2946 86 MNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGT 161 (455)
Q Consensus 86 ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~ 161 (455)
|+++.++++.|+.. ..+.+++ .+|++++|+|+|||||||++|+|+.++.|+ +|.++++|+
T Consensus 1 Ml~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---------------~G~v~idg~ 64 (245)
T COG4555 1 MLEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---------------SGKVTIDGV 64 (245)
T ss_pred CeeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---------------CceEEEeec
Confidence 56677888888873 3355554 899999999999999999999999998877 999999999
Q ss_pred eeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHHHHH-------HHHHHHhhccCCCCCcccEEEecCCCcc
Q psy2946 162 IGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERL-------WKSVDERMNKDSKTNSSGMIINTCGWIK 234 (455)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~~l-------~~~~~~~~~~~~~~~~s~~iint~g~~~ 234 (455)
.....+. ..+..+|..+... .+|..+|+++|+.++..+.... .+.+.++++... +.|..--..
T Consensus 65 d~~~~p~-~vrr~IGVl~~e~--glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~-------~~~rRv~~~ 134 (245)
T COG4555 65 DTVRDPS-FVRRKIGVLFGER--GLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLE-------YLDRRVGEF 134 (245)
T ss_pred ccccChH-HHhhhcceecCCc--ChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHH-------HHHHHHhhh
Confidence 7554322 3456677777444 6899999999999998774322 222333333211 112222223
Q ss_pred CCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 235 GDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 235 s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
|.|||||++||||+..+|.++++|||.
T Consensus 135 S~G~kqkV~iARAlvh~P~i~vlDEP~ 161 (245)
T COG4555 135 STGMKQKVAIARALVHDPSILVLDEPT 161 (245)
T ss_pred chhhHHHHHHHHHHhcCCCeEEEcCCC
Confidence 559999999999999999999999995
No 17
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.85 E-value=2.5e-22 Score=177.88 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=101.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
..|++|+|+||+|||||||+++++|+..|. +|+|.++|..... ..|.....+++||+. .+|
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---------------~G~i~i~g~d~t~--~~P~~RPVSmlFQEn--NLF 83 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFETPA---------------SGEILINGVDHTA--SPPAERPVSMLFQEN--NLF 83 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhccCCC---------------CceEEEcCeecCc--CCcccCChhhhhhcc--ccc
Confidence 689999999999999999999999998877 9999999997554 346677788999998 899
Q ss_pred cCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
.++|+.+|+.+..+- -++..+....+++.....+.. +-.+|+||+||+++||+|..+-+|+++|||
T Consensus 84 aHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RL-------P~~LSGGqRQRvALARclvR~~PilLLDEP 156 (231)
T COG3840 84 AHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRL-------PGELSGGQRQRVALARCLVREQPILLLDEP 156 (231)
T ss_pred hhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhC-------ccccCchHHHHHHHHHHHhccCCeEEecCc
Confidence 999999999886532 233344444555443322211 224556999999999999999999999999
Q ss_pred hh
Q psy2946 261 LY 262 (455)
Q Consensus 261 l~ 262 (455)
|.
T Consensus 157 Fs 158 (231)
T COG3840 157 FS 158 (231)
T ss_pred hh
Confidence 74
No 18
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.1e-22 Score=188.88 Aligned_cols=133 Identities=17% Similarity=0.095 Sum_probs=97.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc-cccccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV-IERPATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~-~~~~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|++|||||||+|+|+|+..++ +|+|.++|...... ..+.......++||+|...+
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---------------~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SL 95 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPS---------------SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSL 95 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCC---------------CceEEECCcccCccccchhhccceeEEecCCcccc
Confidence 799999999999999999999999998777 99999999643332 22234566789999997667
Q ss_pred ecCCCcccCHHHHHHH-----HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 187 YGHLTPNANLELYQHC-----VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~-----~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.+..|+.+-+.-.... .++.+.++.+.++..+. +.+-.+..+|+||+||++|||||.++|+++|+|||+
T Consensus 96 nP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~------~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt 169 (252)
T COG1124 96 NPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPS------FLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPT 169 (252)
T ss_pred CcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHH------HHhcCchhcChhHHHHHHHHHHhccCCCEEEecCch
Confidence 6766666554443332 12224445555444322 223334456679999999999999999999999996
No 19
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=1.4e-22 Score=186.81 Aligned_cols=155 Identities=19% Similarity=0.146 Sum_probs=113.5
Q ss_pred cchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
+|+++.|++..|+. ..+++++ ++|++++|+|+||+|||||+|+|+|+..+. +|+|.+.|
T Consensus 2 ~mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---------------~G~I~~~G 64 (237)
T COG0410 2 PMLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---------------SGRIIFDG 64 (237)
T ss_pred CceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CeeEEECC
Confidence 57777788888876 4455554 899999999999999999999999998766 89999999
Q ss_pred eeeccccc-cccccCCCCcccCceEEEecCCCcccCHHHHHHHHHH--HHHH-HHHhhccCCCCCcccEEEecCCCccCC
Q psy2946 161 TIGALVIE-RPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVER--LWKS-VDERMNKDSKTNSSGMIINTCGWIKGD 236 (455)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~~--l~~~-~~~~~~~~~~~~~s~~iint~g~~~s~ 236 (455)
.++..... +..+..++|++|.- ..|+.+||.||+.+....... .... ..+.++.-+..+ ...+..+-.+|+
T Consensus 65 ~dit~~p~~~r~r~Gi~~VPegR--~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lk---er~~~~aG~LSG 139 (237)
T COG0410 65 EDITGLPPHERARLGIAYVPEGR--RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLK---ERRNQRAGTLSG 139 (237)
T ss_pred eecCCCCHHHHHhCCeEeCcccc--cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHH---HHhcCcccCCCh
Confidence 98766533 34566789999988 899999999999975433221 1110 111111111100 011334455667
Q ss_pred cHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 237 GFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 237 G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
|++|.++|||||+.+|+++++|||.
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs 164 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPS 164 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999999999999999999999994
No 20
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.8e-22 Score=184.90 Aligned_cols=151 Identities=19% Similarity=0.132 Sum_probs=105.7
Q ss_pred chhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCe
Q psy2946 86 MNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGT 161 (455)
Q Consensus 86 ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~ 161 (455)
|+++.|+++.|.+. ..+++++ ++||+|+|+|++|||||||+|+|.|+ .||+.|+|.++|.
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl---------------~d~t~G~i~~~g~ 66 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL---------------VDPTSGEILFNGV 66 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc---------------cCCCcceEEeccc
Confidence 44445555555211 2333332 79999999999999999999999996 4666999999997
Q ss_pred eecccccc---ccccCCCCcccCceEEEecCCCcccCHHHHHHHH---------------HHHHHHHHHhhccCCCCCcc
Q psy2946 162 IGALVIER---PATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV---------------ERLWKSVDERMNKDSKTNSS 223 (455)
Q Consensus 162 ~~~~~~~~---~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~---------------~~l~~~~~~~~~~~~~~~~s 223 (455)
.......+ .++..+||+||.+ .+.+.+++.+|+..+.... +..+-...++++..+...
T Consensus 67 ~i~~~~~k~lr~~r~~iGmIfQ~~--nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-- 142 (258)
T COG3638 67 QITKLKGKELRKLRRDIGMIFQQF--NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-- 142 (258)
T ss_pred chhccchHHHHHHHHhceeEeccC--CcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH--
Confidence 65554433 3467789999999 8999999999988754321 112223333433322100
Q ss_pred cEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 224 GMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 224 ~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...-.+|+||+||++|||||..+|++++.|||.
T Consensus 143 -----qra~~LSGGQQQRVaIARaL~Q~pkiILADEPv 175 (258)
T COG3638 143 -----QRASTLSGGQQQRVAIARALVQQPKIILADEPV 175 (258)
T ss_pred -----HHhccCCcchhHHHHHHHHHhcCCCEEecCCcc
Confidence 011123459999999999999999999999996
No 21
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=5.2e-23 Score=184.85 Aligned_cols=152 Identities=14% Similarity=0.164 Sum_probs=119.6
Q ss_pred cchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
+++...|++|.|++. .+.++. .+||+|+++|||||||||.+.+++|+..++ +|.|.++|
T Consensus 3 ~~L~a~~l~K~y~kr--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---------------~G~i~ld~ 65 (243)
T COG1137 3 STLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---------------SGKILLDD 65 (243)
T ss_pred cEEEehhhhHhhCCe--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---------------CceEEECC
Confidence 356778999999873 333332 899999999999999999999999998877 99999999
Q ss_pred eeecccc-ccccccCCCCcccCceEEEecCCCcccCHHHHHHHHHHH---------HHHHHHhhccCCCCCcccEEEecC
Q psy2946 161 TIGALVI-ERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERL---------WKSVDERMNKDSKTNSSGMIINTC 230 (455)
Q Consensus 161 ~~~~~~~-~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~~l---------~~~~~~~~~~~~~~~~s~~iint~ 230 (455)
..+...+ .+..+..+||.+|++ ..|..+|+.+|+...++..... .+.+.+.++. .-+-+.+
T Consensus 66 ~diT~lPm~~RArlGigYLpQE~--SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i-------~hlr~~~ 136 (243)
T COG1137 66 EDITKLPMHKRARLGIGYLPQEA--SIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHI-------THLRDSK 136 (243)
T ss_pred cccccCChHHHhhcCcccccccc--hHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhch-------HHHhcCc
Confidence 8765433 345567789999999 8999999999999887764311 1222222222 2244667
Q ss_pred CCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 231 GWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 231 g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
+..+|+|++.|++|||||+.+|.++++||||.
T Consensus 137 a~sLSGGERRR~EIARaLa~~P~fiLLDEPFA 168 (243)
T COG1137 137 AYSLSGGERRRVEIARALAANPKFILLDEPFA 168 (243)
T ss_pred ccccccchHHHHHHHHHHhcCCCEEEecCCcc
Confidence 88888899999999999999999999999983
No 22
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.1e-21 Score=173.77 Aligned_cols=125 Identities=17% Similarity=0.235 Sum_probs=101.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|+.++++||+|||||||+++++|+..+. +|+|.++|.-+..+. ...|.+||++ .++
T Consensus 29 a~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---------------~G~i~l~~r~i~gPg-----aergvVFQ~~--~Ll 86 (259)
T COG4525 29 ASGELVVVLGPSGCGKTTLLNLIAGFVTPS---------------RGSIQLNGRRIEGPG-----AERGVVFQNE--ALL 86 (259)
T ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCcCcc---------------cceEEECCEeccCCC-----ccceeEeccC--ccc
Confidence 699999999999999999999999997665 999999998554432 2358899999 899
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+.+++.||+.|.+++. .+.+.+....++..... +-.-|.+|+||+||+.|||||+.+|.++++|||
T Consensus 87 PWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~-------~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEP 159 (259)
T COG4525 87 PWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAE-------HKYIWQLSGGMRQRVGIARALAVEPQLLLLDEP 159 (259)
T ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccc-------ccceEeecchHHHHHHHHHHhhcCcceEeecCc
Confidence 9999999999988763 23444555555443322 335577888999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 160 f 160 (259)
T COG4525 160 F 160 (259)
T ss_pred h
Confidence 7
No 23
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.82 E-value=6.6e-22 Score=188.19 Aligned_cols=130 Identities=21% Similarity=0.131 Sum_probs=98.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+||||||||||+|+|+|++.+. +|+|.++|........+.+....+|++|.+ ...
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---------------~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~--~~~ 88 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLKPK---------------SGEVLLDGKDIASLSPKELAKKLAYVPQSP--SAP 88 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCCC---------------CCEEEECCCchhhcCHHHHhhhEEEeccCC--CCC
Confidence 689999999999999999999999998777 999999999888777777777889999987 566
Q ss_pred cCCCcccCHHHHHHHH-----------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 188 GHLTPNANLELYQHCV-----------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-----------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
..+|+.|-+.+...-. .+.++...+.++..... +.+-..+|+||+||+.|||||+.++++++
T Consensus 89 ~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la-------~r~~~~LSGGerQrv~iArALaQ~~~iLL 161 (258)
T COG1120 89 FGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA-------DRPVDELSGGERQRVLIARALAQETPILL 161 (258)
T ss_pred CCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHh-------cCcccccChhHHHHHHHHHHHhcCCCEEE
Confidence 6778888777653321 11223333333332211 11122345599999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 162 LDEPT 166 (258)
T COG1120 162 LDEPT 166 (258)
T ss_pred eCCCc
Confidence 99996
No 24
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.82 E-value=1e-21 Score=193.42 Aligned_cols=129 Identities=24% Similarity=0.247 Sum_probs=103.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++++||||||||||+|+|+|+..++ +|+|.+.|...... ....+..+||++|++ .++
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~gl~~p~---------------~G~i~i~G~~~~~~-~~~~~~~igy~~~~~--~~~ 90 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLLKPT---------------SGEILVLGYDVVKE-PAKVRRRIGYVPQEP--SLY 90 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCCC---------------ceEEEEcCEeCccC-HHHHHhheEEEccCC--CCC
Confidence 789999999999999999999999998877 99999999765432 234456689999999 899
Q ss_pred cCCCcccCHHHHHHHHH-------HHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCVE-------RLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~-------~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+++|++||+.++..+.. ...+.+.+.++..... +..--..|.|||||+.||.||..+|.++|+|||
T Consensus 91 ~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEP 163 (293)
T COG1131 91 PELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKKVRTLSGGMKQRLSIALALLHDPELLILDEP 163 (293)
T ss_pred ccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 99999999999988763 3455566666554311 222223456999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 164 t 164 (293)
T COG1131 164 T 164 (293)
T ss_pred C
Confidence 6
No 25
>KOG2750|consensus
Probab=99.82 E-value=6.1e-20 Score=186.17 Aligned_cols=314 Identities=20% Similarity=0.225 Sum_probs=180.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccC--ceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLA--PIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~--p~~~ 185 (455)
.--++++++|+.||||||+++.+.+...... +..+.+.|+|+||.++.++|+++......++.....+..-. -+.+
T Consensus 205 ~~~p~im~~g~kgsgKSt~~r~~i~~~l~~~--y~~v~~l~~d~gq~e~sp~g~is~~~lssPi~~~v~~~ql~~~~l~~ 282 (587)
T KOG2750|consen 205 YYQPRIMVIGGKGSGKSTFVRKLINEFLQDI--YDHVFSLDCDEGQPEYSPPGCISLTKLSSPIDLKVHLCQLSNTLLQF 282 (587)
T ss_pred ccCceeEEeccCCcccchHHHHHHHHHHHhh--heEEEEEeccCCCceecCccccccccccCccccchhhhhhchhhhhh
Confidence 4557899999999999999999999854441 56788899999999999999999888888776543322111 1123
Q ss_pred EecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhhHHH
Q psy2946 186 NYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNEL 265 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~~~l 265 (455)
+.|.-...+++..+.+..+++....+.. .......|||++||+.|.|++.|..|.|...+.+.|-+.+|..-..+
T Consensus 283 ~~~sd~~~~~v~~l~~~~~~~f~~se~~-----~~~~~~~IIn~pGwi~g~gaell~~I~Ri~qPt~~V~~~~s~t~~~~ 357 (587)
T KOG2750|consen 283 YAGSDHYQREVTSLFNCYQRLFDHSEEQ-----PKFFGPLIINLPGWIKGFGAELLNHIIRIYQPTHFVEIEISNTKSHL 357 (587)
T ss_pred hccchhhhhhhhhHHHHHHHhccchhhc-----ccccCceEEecCCccccccHHHHHhHHhhcChhheeehhhhhhccCc
Confidence 4442122233333333333333322221 13456799999999999999999999999999999988876443222
Q ss_pred Hhh---------CCCceEEEEeCCCCC---cccCCHHHHHHHHHHHHHHhccCCCCCCCCceeEEEEeccEEEEEe---c
Q psy2946 266 IRE---------LPKSYDVVLLPKSGG---VVDRSRQFRAEARDKRIKEYFYGSRLKPFNPHSFDIKFGEVQIYKI---G 330 (455)
Q Consensus 266 ~~~---------l~~~~~v~~l~~s~g---~~~r~~~~~~~~r~~~i~~YF~g~~~~~l~p~~~~v~~~~~~~~~~---~ 330 (455)
... ..+.+.+..++.... -+..++...+.+|...+..||+.... +.+...|........ .
T Consensus 358 ~~l~e~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~a~~~r~l~Ilsy~~~~~~-----~~~~a~f~~~~p~~~~~~~ 432 (587)
T KOG2750|consen 358 PELGEPQHFSISGRDDFALELLPVQRASLNHTLSSRFHAKYLRTLKILSYFSKNTP-----FDYAASFPPCLPSAPLQIS 432 (587)
T ss_pred hhcCCCceeEEecccceeEEEecchhhhcccccccchhHHHhhhHHHHHHHHhhcC-----CchhhcccccCCCchhhhc
Confidence 211 012222222222211 12345677899999999999986543 112222221111110 0
Q ss_pred CC-CCCCc-cCcCCCccc----cc---eeEEEEeCCCccccccEEE--EecCCC-cchhccC-CeeEEEEEeEeecCCCE
Q psy2946 331 AP-VLPDS-CMPLGVTAT----EF---LTKVVLVQPGPSLLHHLLA--LSFATT-ESEILEQ-NIVGFVCVTHVDMLRQS 397 (455)
Q Consensus 331 ~~-~~p~~-~lp~g~~~~----~~---~~~~~~~~~~~~l~~~i~A--v~~~~~-~~~~~~~-~~~Gf~~V~~vd~~~~~ 397 (455)
.+ .+|.. .++.-.... .. ...+...+........++. +..... .+..+.+ +|+|||+||+||+|++.
T Consensus 433 s~~~i~~~~~I~~~~~~Sdi~p~i~k~~~~i~as~v~~s~~~~~vs~~lg~~~il~~~~P~~~nciGlGIvRgID~Er~i 512 (587)
T KOG2750|consen 433 SPKGIPGIKGIQDRMEFSDLNPQIIKSALAINASDVYYSNLQDIVSKGLGNFPILQDCTPSSKNCIGLGIVRGIDTERRI 512 (587)
T ss_pred CccccchhhccccccchhhcchHhhhhheeecccccccccchhhhhcCCCCcceecCCCcCCccceeeEEEeeeecccce
Confidence 00 00000 000000000 00 0000000000000000110 000000 1233333 49999999999999999
Q ss_pred EEEEecCCCCCCCceEEeecccchhccccee-eeeccccccccCCC
Q psy2946 398 LSVLCLQARPLPCSKLILTDIQYMDRLHQWV-YSVPAGLSRSYGPP 442 (455)
Q Consensus 398 i~vltP~~~~lp~~~lv~g~~~~~~~~~~~~-~~~p~~~~~~~~~~ 442 (455)
++|++|+|..+ ++-.|+++.|. +.+|+|.++-.+.+
T Consensus 513 l~ivtPvpl~~---------i~~vd~livg~ri~lpt~fl~~~~~~ 549 (587)
T KOG2750|consen 513 LYIVTPVPLEK---------IEDVDCLLVGVRIQLPTCFLDFQPYP 549 (587)
T ss_pred EEEecCCCHHH---------hccCCeEEEeeeccCCcceEeccCCC
Confidence 99999999754 55667777777 99999998776554
No 26
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=8.5e-22 Score=186.57 Aligned_cols=129 Identities=20% Similarity=0.156 Sum_probs=91.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|++.+. +|+|.+.|....... -...+||++|.....+-
T Consensus 28 ~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---------------~G~i~~~g~~~~~~~---~~~~IgYVPQ~~~~d~~ 89 (254)
T COG1121 28 EKGEITALIGPNGAGKSTLLKAILGLLKPS---------------SGEIKIFGKPVRKRR---KRLRIGYVPQKSSVDRS 89 (254)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCC---------------cceEEEccccccccc---cCCeEEEcCcccccCCC
Confidence 689999999999999999999999998877 999998887543221 13468999985421222
Q ss_pred cCCCcccCHHHHHHH-----------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 188 GHLTPNANLELYQHC-----------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-----------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
-..||+|-+.+.... -++.+++.+++++.... .|-+-..+|+||+||+.|||||+.+|++++
T Consensus 90 fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~-------~~r~i~~LSGGQ~QRV~lARAL~~~p~lll 162 (254)
T COG1121 90 FPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDL-------RDRQIGELSGGQKQRVLLARALAQNPDLLL 162 (254)
T ss_pred CCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhh-------hCCcccccCcHHHHHHHHHHHhccCCCEEE
Confidence 235787766653111 12344455555443321 222334456699999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 163 LDEP~ 167 (254)
T COG1121 163 LDEPF 167 (254)
T ss_pred ecCCc
Confidence 99997
No 27
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=6.2e-22 Score=199.56 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=99.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|...... .+....++|++|++ .+|
T Consensus 30 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---------------~G~I~~~g~~i~~~--~~~~r~ig~vfQ~~--~lf 90 (351)
T PRK11432 30 KQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---------------EGQIFIDGEDVTHR--SIQQRDICMVFQSY--ALF 90 (351)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCCCCC---------------ceEEEECCEECCCC--CHHHCCEEEEeCCc--ccC
Confidence 689999999999999999999999997666 99999999865432 12345689999999 899
Q ss_pred cCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+++|+.+|+.+.... ..+.++.+.+.++... ..|.....+|+||+||++|||||..+|+++|+|||
T Consensus 91 p~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~-------~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP 163 (351)
T PRK11432 91 PHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG-------FEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163 (351)
T ss_pred CCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCch-------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 999999999987542 1223334444443321 22444556777999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 164 ~ 164 (351)
T PRK11432 164 L 164 (351)
T ss_pred c
Confidence 6
No 28
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.81 E-value=7.6e-22 Score=199.20 Aligned_cols=128 Identities=19% Similarity=0.165 Sum_probs=101.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|...... .+....++|++|++ .+|
T Consensus 28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---------------~G~I~i~g~~~~~~--~~~~r~ig~v~Q~~--~lf 88 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLRIIAGLERQT---------------AGTIYQGGRDITRL--PPQKRDYGIVFQSY--ALF 88 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCCCC---------------ceEEEECCEECCCC--CHHHCCEEEEeCCc--ccC
Confidence 589999999999999999999999997666 99999999865432 12345689999998 899
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+++|+.+|+.+..... ...++++.+.++... ..|.....+|+||+||++|||||..+|.++|+|||
T Consensus 89 p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~-------~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP 161 (353)
T TIGR03265 89 PNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG-------SERKYPGQLSGGQQQRVALARALATSPGLLLLDEP 161 (353)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc-------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999999875431 223444444444322 23455566778999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 162 ~ 162 (353)
T TIGR03265 162 L 162 (353)
T ss_pred c
Confidence 6
No 29
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=6.2e-22 Score=200.06 Aligned_cols=128 Identities=17% Similarity=0.211 Sum_probs=99.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|....... +....++|++|++ .+|
T Consensus 28 ~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---------------~G~I~~~g~~i~~~~--~~~r~ig~v~Q~~--~lf 88 (356)
T PRK11650 28 ADGEFIVLVGPSGCGKSTLLRMVAGLERIT---------------SGEIWIGGRVVNELE--PADRDIAMVFQNY--ALY 88 (356)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCCCCC---------------ceEEEECCEECCCCC--HHHCCEEEEeCCc--ccc
Confidence 689999999999999999999999997666 999999998654321 2335689999999 899
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+++|+.+|+.+..... ...++.+.+.++... ..|.....+|+||+||++|||||..+|.++|+|||
T Consensus 89 p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-------~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP 161 (356)
T PRK11650 89 PHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEP-------LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP 161 (356)
T ss_pred CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999998875421 122334444443321 23444556777999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 162 ~ 162 (356)
T PRK11650 162 L 162 (356)
T ss_pred c
Confidence 6
No 30
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.80 E-value=1.1e-21 Score=199.03 Aligned_cols=128 Identities=14% Similarity=0.126 Sum_probs=98.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|...... .+....++|+||++ .+|
T Consensus 38 ~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---------------~G~I~~~g~~i~~~--~~~~r~ig~vfQ~~--~lf 98 (375)
T PRK09452 38 NNGEFLTLLGPSGCGKTTVLRLIAGFETPD---------------SGRIMLDGQDITHV--PAENRHVNTVFQSY--ALF 98 (375)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCC---------------ceEEEECCEECCCC--CHHHCCEEEEecCc--ccC
Confidence 689999999999999999999999997666 99999999865432 12335689999998 899
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+++|+.+|+.+..... .+..+.+.+.++... ..|.....+|+||+||++|||||..+|.++|+|||
T Consensus 99 p~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP 171 (375)
T PRK09452 99 PHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEE-------FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES 171 (375)
T ss_pred CCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999998865421 122333334333321 23444456677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 172 ~ 172 (375)
T PRK09452 172 L 172 (375)
T ss_pred C
Confidence 6
No 31
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=6.8e-22 Score=187.54 Aligned_cols=132 Identities=20% Similarity=0.162 Sum_probs=102.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecc-ccccccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGAL-VIERPATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~-~~~~~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+++|+|++.+. .|.|.++|..... .....++..+|++||+|..+|
T Consensus 28 ~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---------------~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~ 92 (235)
T COG1122 28 EKGERVLLIGPNGSGKSTLLKLLNGLLKPT---------------SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQL 92 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCcCcCC---------------CCEEEECCeeccchhhHHHhhcceEEEEECccccc
Confidence 689999999999999999999999999887 7899888876442 233456778999999998888
Q ss_pred ecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCc
Q psy2946 187 YGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE 259 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DE 259 (455)
|.. ||.+.+.|..... .+......+.++.... .+.+...+|+||+||++||.+|+.+|.++|+||
T Consensus 93 ~~~-tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~-------~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDE 164 (235)
T COG1122 93 FGP-TVEDEVAFGLENLGLPREEIEERVAEALELVGLEEL-------LDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDE 164 (235)
T ss_pred ccC-cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhh-------ccCCccccCCcceeeHHhhHHHHcCCCEEEEcC
Confidence 876 8888899876542 2233333444333221 345566677799999999999999999999999
Q ss_pred hhh
Q psy2946 260 RLY 262 (455)
Q Consensus 260 pl~ 262 (455)
|+.
T Consensus 165 Pta 167 (235)
T COG1122 165 PTA 167 (235)
T ss_pred CCC
Confidence 973
No 32
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.3e-21 Score=199.01 Aligned_cols=128 Identities=19% Similarity=0.161 Sum_probs=99.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|...... .+.+..++|+||++ .+|
T Consensus 43 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---------------~G~I~i~g~~i~~~--~~~~r~ig~vfQ~~--~lf 103 (377)
T PRK11607 43 YKGEIFALLGASGCGKSTLLRMLAGFEQPT---------------AGQIMLDGVDLSHV--PPYQRPINMMFQSY--ALF 103 (377)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCC---------------ceEEEECCEECCCC--CHHHCCEEEEeCCC--ccC
Confidence 689999999999999999999999997666 99999999864332 23345689999999 899
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+++|+.+|+.+..... .+.+..+.+.++.. -..+.....+|+||+||++|||||..+|.++|+|||
T Consensus 104 p~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP 176 (377)
T PRK11607 104 PHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ-------EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEP 176 (377)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999998865431 12223333333322 123455566788999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 177 ~ 177 (377)
T PRK11607 177 M 177 (377)
T ss_pred c
Confidence 6
No 33
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.80 E-value=1.2e-21 Score=184.92 Aligned_cols=130 Identities=16% Similarity=0.141 Sum_probs=95.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc---ccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER---PATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~---~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|......... ..+..++|++|++
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~-- 89 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIEKPT---------------RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDH-- 89 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEehhhcChhHHHHHHHhceEEecCc--
Confidence 589999999999999999999999997665 89999999754321111 1334678999998
Q ss_pred EEecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 185 YNYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
.++...|+.+|+.+.... ....+..+.+.++... ..+.....+|+||+||++|||||..+|.++|+
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LSgG~~qrv~laral~~~p~llll 162 (216)
T TIGR00960 90 RLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEG-------KAHALPMQLSGGEQQRVAIARAIVHKPPLLLA 162 (216)
T ss_pred cccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 788888999999875432 1122233333333221 22444456677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 163 DEPt 166 (216)
T TIGR00960 163 DEPT 166 (216)
T ss_pred eCCC
Confidence 9997
No 34
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=4.8e-21 Score=177.99 Aligned_cols=151 Identities=17% Similarity=0.119 Sum_probs=113.6
Q ss_pred cchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
+++++.++++.|++ ..++++. .+|++++|+||||||||||+++|+|++.|+ .|+|.+.|
T Consensus 3 ~lL~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---------------~G~v~~~G 65 (250)
T COG0411 3 PLLEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---------------SGTVIFRG 65 (250)
T ss_pred ceeeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---------------CceEEECC
Confidence 56677788888877 4455554 899999999999999999999999998887 99999999
Q ss_pred eeeccccc-cccccCCCCcccCceEEEecCCCcccCHHHHHHHH-------------------HHHHHHHHHhhccCCCC
Q psy2946 161 TIGALVIE-RPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV-------------------ERLWKSVDERMNKDSKT 220 (455)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~-------------------~~l~~~~~~~~~~~~~~ 220 (455)
..+..... +..+..+...||.+ ..|.++|+.||+....... .+.+..+.+.++....
T Consensus 66 ~~it~l~p~~iar~Gi~RTFQ~~--rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~- 142 (250)
T COG0411 66 RDITGLPPHRIARLGIARTFQIT--RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGEL- 142 (250)
T ss_pred cccCCCCHHHHHhccceeecccc--cccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchh-
Confidence 96655432 23445567788999 8999999999998864311 1223333444443322
Q ss_pred CcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 221 NSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 221 ~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.|.+.-.++.|++++++||||++.+|+++++|||.
T Consensus 143 ------a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPa 177 (250)
T COG0411 143 ------ADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPA 177 (250)
T ss_pred ------hcchhhcCChhHhHHHHHHHHHhcCCCEEEecCcc
Confidence 23344445669999999999999999999999995
No 35
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.79 E-value=1.2e-20 Score=204.18 Aligned_cols=162 Identities=19% Similarity=0.201 Sum_probs=117.4
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.+++++ ..+.|..++.+.++..|++. ++|++++|+|+||||||||+|+|+|+..+.
T Consensus 471 ~I~~~n--vsf~y~~~~~~vL~~isL~I-------------~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~--------- 526 (709)
T COG2274 471 EIEFEN--VSFRYGPDDPPVLEDLSLEI-------------PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ--------- 526 (709)
T ss_pred eEEEEE--EEEEeCCCCcchhhceeEEe-------------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------
Confidence 477775 88888877665554444443 699999999999999999999999997666
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHHH--HHHHHHHHhhccCCC----C
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVE--RLWKSVDERMNKDSK----T 220 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~--~l~~~~~~~~~~~~~----~ 220 (455)
+|+|.++|..........++..+++++|++ ++|.. |++||+.+...... +..+.+ ...+.... .
T Consensus 527 ------~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~--~Lf~g-SI~eNi~l~~p~~~~e~i~~A~-~~ag~~~fI~~lP 596 (709)
T COG2274 527 ------QGRILLDGVDLNDIDLASLRRQVGYVLQDP--FLFSG-SIRENIALGNPEATDEEIIEAA-QLAGAHEFIENLP 596 (709)
T ss_pred ------CceEEECCEeHHhcCHHHHHhheeEEcccc--hhhcC-cHHHHHhcCCCCCCHHHHHHHH-HHhCcHHHHHhcc
Confidence 999999999877776677888999999999 66655 89999988532211 111111 11111000 0
Q ss_pred CcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 221 NSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 221 ~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
....-.+.-.|-.+|+|||||++|||||..+|.|+|+||++.
T Consensus 597 ~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTS 638 (709)
T COG2274 597 MGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATS 638 (709)
T ss_pred cccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCccc
Confidence 111122333566678899999999999999999999999963
No 36
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.79 E-value=2.3e-21 Score=192.40 Aligned_cols=129 Identities=20% Similarity=0.161 Sum_probs=97.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.+.|....... ...+..++|++|++ .++
T Consensus 31 ~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---------------~G~v~i~G~~~~~~~-~~~~~~ig~v~q~~--~~~ 92 (306)
T PRK13537 31 QRGECFGLLGPNGAGKTTTLRMLLGLTHPD---------------AGSISLCGEPVPSRA-RHARQRVGVVPQFD--NLD 92 (306)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCC---------------ceEEEECCEecccch-HHHHhcEEEEeccC--cCC
Confidence 689999999999999999999999997766 899999998653321 22455689999998 788
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
..+|+.+|+.++.... ...++.+.+.++... ..|++...+|+||+||++||+||..+|.++|+|||
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEP 165 (306)
T PRK13537 93 PDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-------KADAKVGELSGGMKRRLTLARALVNDPDVLVLDEP 165 (306)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------HhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 8899999998866432 112223333333221 12333345677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 166 t 166 (306)
T PRK13537 166 T 166 (306)
T ss_pred C
Confidence 6
No 37
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.79 E-value=2.3e-21 Score=194.64 Aligned_cols=130 Identities=19% Similarity=0.081 Sum_probs=99.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc---ccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER---PATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~---~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|......... ..+..++|++|++
T Consensus 29 ~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---------------~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~-- 91 (343)
T TIGR02314 29 PAGQIYGVIGASGAGKSTLIRCVNLLERPT---------------SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHF-- 91 (343)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------ceEEEECCEECCcCCHHHHHHHhcCEEEEECCc--
Confidence 589999999999999999999999997666 99999999865432211 1345689999998
Q ss_pred EEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 185 YNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
.+++..|+.+|+.+..... .+.+.++.+.++... ..|.....+|+||+||++|||||+.+|.++|+
T Consensus 92 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~-------~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLl 164 (343)
T TIGR02314 92 NLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD-------KHDSYPSNLSGGQKQRVAIARALASNPKVLLC 164 (343)
T ss_pred cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 7888899999998865421 122333444443321 23455667788999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 165 DEPt 168 (343)
T TIGR02314 165 DEAT 168 (343)
T ss_pred eCCc
Confidence 9995
No 38
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.79 E-value=3.4e-21 Score=194.83 Aligned_cols=128 Identities=13% Similarity=0.141 Sum_probs=99.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC--CcCCCCCeeeccccccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ--GHVSVPGTIGALVIERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq--G~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+||||||||||+|+|+|+..++ + |+|.++|...... .+....++|++|++ .
T Consensus 29 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---------------~~~G~i~~~g~~~~~~--~~~~r~ig~vfQ~~--~ 89 (362)
T TIGR03258 29 EAGELLALIGKSGCGKTTLLRAIAGFVKAA---------------GLTGRIAIADRDLTHA--PPHKRGLALLFQNY--A 89 (362)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CCCEEEEECCEECCCC--CHHHCCEEEEECCc--c
Confidence 589999999999999999999999997666 8 9999999865321 12345689999998 8
Q ss_pred EecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecC
Q psy2946 186 NYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~D 258 (455)
+|+++|+.+|+.+..... .+.++.+.+.++... ..|.....+|+||+||++|||||+.+|.++|+|
T Consensus 90 l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-------~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLD 162 (362)
T TIGR03258 90 LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGD-------AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLD 162 (362)
T ss_pred cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc-------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999999876431 223334444443321 234455567779999999999999999999999
Q ss_pred chh
Q psy2946 259 ERL 261 (455)
Q Consensus 259 Epl 261 (455)
||+
T Consensus 163 EP~ 165 (362)
T TIGR03258 163 EPL 165 (362)
T ss_pred Ccc
Confidence 996
No 39
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=1.4e-19 Score=160.18 Aligned_cols=151 Identities=16% Similarity=0.086 Sum_probs=115.1
Q ss_pred cchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
+.+++.|+|+.|+. ..+++.+ .+|+++.|+|.+|||||||+|||.=+..|. +|.|.++|
T Consensus 5 ~~l~v~dlHK~~G~--~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---------------~G~I~v~g 67 (256)
T COG4598 5 NALEVEDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---------------AGSIRVNG 67 (256)
T ss_pred cceehhHHHhhccc--chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---------------CceEEECC
Confidence 45788999999987 4555554 899999999999999999999998776666 89999999
Q ss_pred eeecccccc-------------ccccCCCCcccCceEEEecCCCcccCHHHHHH--------HHHHHHHHHHHhhccCCC
Q psy2946 161 TIGALVIER-------------PATIEDGFSQLAPIVYNYGHLTPNANLELYQH--------CVERLWKSVDERMNKDSK 219 (455)
Q Consensus 161 ~~~~~~~~~-------------~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~--------~~~~l~~~~~~~~~~~~~ 219 (455)
..+....+. .++...+++||+. .+++++|+.+|+.-.-. -..+.++.+..+++...+
T Consensus 68 eei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~F--NLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek 145 (256)
T COG4598 68 EEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHF--NLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEK 145 (256)
T ss_pred eEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhc--chhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhh
Confidence 865443321 2344568999988 89999999998754211 123446667777776655
Q ss_pred CCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 220 TNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 220 ~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
... .+-.+|+||+||++|||||+..|.++++|||+
T Consensus 146 ~~~-------YP~~LSGGQQQR~aIARaLameP~vmLFDEPT 180 (256)
T COG4598 146 ADA-------YPAHLSGGQQQRVAIARALAMEPEVMLFDEPT 180 (256)
T ss_pred hhc-------CccccCchHHHHHHHHHHHhcCCceEeecCCc
Confidence 332 23345569999999999999999999999996
No 40
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.78 E-value=1.3e-19 Score=159.15 Aligned_cols=152 Identities=19% Similarity=0.108 Sum_probs=112.6
Q ss_pred chhhhHHHHHHHHHH--HHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCC
Q psy2946 86 MNYYMNVHIILEKQR--SEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVP 159 (455)
Q Consensus 86 ml~~~nl~~~~~~~r--~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~ 159 (455)
++++.++++..++.. ..+++++ ++|+.++|+||+|||||||+-.|+|+-.++ +|++.+-
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---------------sGeV~l~ 70 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---------------SGEVRLL 70 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---------------CceEEEc
Confidence 566677777665421 1223332 899999999999999999999999996655 9999999
Q ss_pred Ceeeccccccc----cccCCCCcccCceEEEecCCCcccCHHHHHHHHH-------HHHHHHHHhhccCCCCCcccEEEe
Q psy2946 160 GTIGALVIERP----ATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVE-------RLWKSVDERMNKDSKTNSSGMIIN 228 (455)
Q Consensus 160 G~~~~~~~~~~----~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~-------~l~~~~~~~~~~~~~~~~s~~iin 228 (455)
|+......++. .....||+||.. ++.+++|..||+.+.+.+.. ..+....++++...... .
T Consensus 71 G~~L~~ldEd~rA~~R~~~vGfVFQSF--~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~------H 142 (228)
T COG4181 71 GQPLHKLDEDARAALRARHVGFVFQSF--HLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLT------H 142 (228)
T ss_pred CcchhhcCHHHHHHhhccceeEEEEee--eccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccc------c
Confidence 98655443331 235679999988 89999999999998876643 23444555555443322 2
Q ss_pred cCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 229 TCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 229 t~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.+-.+|+|++||++|||||+..|+|++.|||+
T Consensus 143 -yP~qLSGGEQQRVAiARAfa~~P~vLfADEPT 174 (228)
T COG4181 143 -YPAQLSGGEQQRVALARAFAGRPDVLFADEPT 174 (228)
T ss_pred -CccccCchHHHHHHHHHHhcCCCCEEeccCCC
Confidence 23356679999999999999999999999996
No 41
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.78 E-value=5.5e-21 Score=191.99 Aligned_cols=150 Identities=19% Similarity=0.130 Sum_probs=106.8
Q ss_pred cchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
+|+++.|+++.|++ ..+++++ .+|++++|+||||||||||+|+|+|++.++ +|+|.+.|
T Consensus 40 ~~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---------------~G~i~i~G 102 (340)
T PRK13536 40 VAIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---------------AGKITVLG 102 (340)
T ss_pred eeEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---------------ceEEEECC
Confidence 34555555555543 2233332 799999999999999999999999997766 99999999
Q ss_pred eeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCc
Q psy2946 161 TIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWI 233 (455)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~ 233 (455)
...... .......++|++|++ .+++.+|+.+|+.++.... .+.++.+.+.++... ..|...-.
T Consensus 103 ~~~~~~-~~~~~~~ig~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-------~~~~~~~~ 172 (340)
T PRK13536 103 VPVPAR-ARLARARIGVVPQFD--NLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADARVSD 172 (340)
T ss_pred EECCcc-hHHHhccEEEEeCCc--cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------hhCCChhh
Confidence 864322 123445689999998 7888999999998765432 112233334333321 12333334
Q ss_pred cCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 234 KGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 234 ~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+|+||+||++||+||..+|.++|+|||+
T Consensus 173 LS~G~kqrv~lA~aL~~~P~lLiLDEPt 200 (340)
T PRK13536 173 LSGGMKRRLTLARALINDPQLLILDEPT 200 (340)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 5669999999999999999999999996
No 42
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.78 E-value=1.6e-20 Score=189.53 Aligned_cols=128 Identities=20% Similarity=0.246 Sum_probs=98.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|...... .+....++|++|++ .+|
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---------------~G~I~i~g~~i~~~--~~~~r~i~~v~Q~~--~l~ 86 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLEHQT---------------SGHIRFHGTDVSRL--HARDRKVGFVFQHY--ALF 86 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CcEEEECCEECCCC--CHHHCCEEEEecCc--ccC
Confidence 589999999999999999999999997655 89999999865332 12335689999998 899
Q ss_pred cCCCcccCHHHHHHH-----------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 188 GHLTPNANLELYQHC-----------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-----------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
+++|+.+|+.+.... ..+.+..+.+.++.. -..|.....+|+||+||++|||||..+|+++|
T Consensus 87 p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-------~~~~~~~~~LSgGq~QRvalArAL~~~P~llL 159 (353)
T PRK10851 87 RHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-------HLADRYPAQLSGGQKQRVALARALAVEPQILL 159 (353)
T ss_pred CCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999886432 112233334443322 12344556677899999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 160 LDEP~ 164 (353)
T PRK10851 160 LDEPF 164 (353)
T ss_pred EeCCC
Confidence 99996
No 43
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.78 E-value=2.9e-20 Score=198.29 Aligned_cols=161 Identities=20% Similarity=0.216 Sum_probs=113.6
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.|++++ ..+.|..+ .+.+ .|+++.. ++|++++|+||+|||||||+++|+|+..++
T Consensus 334 ~I~~~~--vsf~Y~~~-~~vL--~~isl~i-----------~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~--------- 388 (529)
T TIGR02868 334 TLELRD--LSFGYPGS-PPVL--DGVSLDL-----------PPGERVAILGPSGSGKSTLLMLLTGLLDPL--------- 388 (529)
T ss_pred eEEEEE--EEEecCCC-Ccee--ecceEEE-----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------
Confidence 477775 77777532 2332 3333322 699999999999999999999999996554
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHH-HHHHHHHHHHHhhccCCCCCc---
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQH-CVERLWKSVDERMNKDSKTNS--- 222 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~-~~~~l~~~~~~~~~~~~~~~~--- 222 (455)
+|+|.++|...... .+.++..++|++|+| ++|.. |++||+.+... ...+...+..+..+.++....
T Consensus 389 ------~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~--~lF~~-TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~ 458 (529)
T TIGR02868 389 ------QGEVTLDGVSVSSL-QDELRRRISVFAQDA--HLFDT-TVRDNLRLGRPDATDEELWAALERVGLADWLRSLPD 458 (529)
T ss_pred ------CcEEEECCEEhhhH-HHHHHhheEEEccCc--ccccc-cHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcc
Confidence 99999999987777 667778899999999 77766 99999998632 112222222222222111111
Q ss_pred -ccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 223 -SGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 223 -s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
..-.+.-.|..+|+||+||++||||+..+|+++|+|||+.
T Consensus 459 GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TS 499 (529)
T TIGR02868 459 GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTE 499 (529)
T ss_pred cccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 1112222466678899999999999999999999999963
No 44
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=6.4e-21 Score=182.09 Aligned_cols=130 Identities=21% Similarity=0.140 Sum_probs=95.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc---c-ccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP---A-TIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~---~-~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|.......... . ...++|++|++
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~- 96 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---------------SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFH- 96 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCC---------------ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCc-
Confidence 689999999999999999999999997655 899999997543221111 1 23578999998
Q ss_pred EEEecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 184 VYNYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.++..+|+.+|+.+.... ..+.+..+.+.++... ..+.....+|+||+||++||+|+..+|.++|
T Consensus 97 -~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~~~LSgG~~qrl~la~al~~~p~lll 168 (233)
T PRK11629 97 -HLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEH-------RANHRPSELSGGERQRVAIARALVNNPRLVL 168 (233)
T ss_pred -ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 788888999999874321 1122333334433221 1234445567799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 169 LDEPt 173 (233)
T PRK11629 169 ADEPT 173 (233)
T ss_pred EeCCC
Confidence 99997
No 45
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=3e-20 Score=181.31 Aligned_cols=148 Identities=17% Similarity=0.082 Sum_probs=106.3
Q ss_pred hhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeee
Q psy2946 88 YYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIG 163 (455)
Q Consensus 88 ~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~ 163 (455)
.+.|+++.|++ ..++++. .+|++++|+|+||||||||+++|+|+..+. +|+|.++|...
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---------------~G~i~i~g~~~ 88 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---------------SGKVLIDGQDI 88 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------CeEEEECCEEc
Confidence 55688888875 3344443 899999999999999999999999997665 89999999754
Q ss_pred ccccccc----cccCCCCcccCceEEEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCC
Q psy2946 164 ALVIERP----ATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGW 232 (455)
Q Consensus 164 ~~~~~~~----~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~ 232 (455)
....... ....++|++|.+ .++...|+.+|+.+..... ...+..+.+.++... ..+....
T Consensus 89 ~~~~~~~~~~~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~ 159 (269)
T cd03294 89 AAMSRKELRELRRKKISMVFQSF--ALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEG-------WEHKYPD 159 (269)
T ss_pred cccChhhhhhhhcCcEEEEecCc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-------HhhCCcc
Confidence 3221111 123578999988 7787889999988754221 112233333333211 2344445
Q ss_pred ccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 233 IKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 233 ~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.+|+||+||++||+|+..+|.++|+|||+
T Consensus 160 ~LS~Gq~qrv~lAral~~~p~illLDEPt 188 (269)
T cd03294 160 ELSGGMQQRVGLARALAVDPDILLMDEAF 188 (269)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 56779999999999999999999999997
No 46
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2.3e-20 Score=178.43 Aligned_cols=130 Identities=22% Similarity=0.183 Sum_probs=95.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc---cccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE---RPATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~---~~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|........ ...+..++|++|++
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---------------~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~-- 86 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLLRPD---------------SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSG-- 86 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEEccccChhhHHHHhcceEEEccCc--
Confidence 689999999999999999999999997666 8999999975432211 12345578999998
Q ss_pred EEecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 185 YNYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.++..+|+.+|+.+..... ...+..+.+.++... ..+.....+|+||+||++||+||..+|+++|
T Consensus 87 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LSgG~~qrv~ia~al~~~p~lll 159 (235)
T cd03261 87 ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG-------AEDLYPAELSGGMKKRVALARALALDPELLL 159 (235)
T ss_pred ccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch-------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7888889999998753311 112223333333211 2244445567799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 160 lDEPt 164 (235)
T cd03261 160 YDEPT 164 (235)
T ss_pred ecCCc
Confidence 99997
No 47
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=6.3e-21 Score=192.15 Aligned_cols=130 Identities=20% Similarity=0.100 Sum_probs=97.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc---ccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER---PATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~---~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|......... ..+..++|++|++
T Consensus 29 ~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---------------~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~-- 91 (343)
T PRK11153 29 PAGEIFGVIGASGAGKSTLIRCINLLERPT---------------SGRVLVDGQDLTALSEKELRKARRQIGMIFQHF-- 91 (343)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCC---------------ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCC--
Confidence 689999999999999999999999997666 89999999864332111 1245688999998
Q ss_pred EEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 185 YNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
.++...|+.+|+.+..... ...+..+.+.++... ..+.+...+|+||+||++|||||..+|.++|+
T Consensus 92 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-------~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlL 164 (343)
T PRK11153 92 NLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSD-------KADRYPAQLSGGQKQRVAIARALASNPKVLLC 164 (343)
T ss_pred ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 7888889999998764321 112233333333221 23445556777999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 165 DEPt 168 (343)
T PRK11153 165 DEAT 168 (343)
T ss_pred eCCc
Confidence 9996
No 48
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.77 E-value=9.1e-21 Score=179.34 Aligned_cols=129 Identities=17% Similarity=0.128 Sum_probs=95.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|...... ........+|++|++ .++
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~--~~~ 87 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGELRPT---------------SGTAYINGYSIRTD-RKAARQSLGYCPQFD--ALF 87 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------CcEEEECCEecccc-hHHHhhhEEEecCcC--Ccc
Confidence 689999999999999999999999997666 89999998754321 122344578999988 788
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...|+.+|+.+..... ...+..+.+.++.. ...++....+|+||+||++||+|+..+|+++|+|||
T Consensus 88 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 160 (220)
T cd03263 88 DELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-------DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160 (220)
T ss_pred ccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-------HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 8889999988754321 11223333333321 122444456677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 161 ~ 161 (220)
T cd03263 161 T 161 (220)
T ss_pred C
Confidence 7
No 49
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.77 E-value=9.3e-21 Score=179.03 Aligned_cols=130 Identities=27% Similarity=0.231 Sum_probs=95.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc----ccccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER----PATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~----~~~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|......... ......+|++|++
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~- 91 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDRPT---------------SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSF- 91 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---------------ceeEEECCEehhhcchhHHHHHHhhcEEEEeecc-
Confidence 689999999999999999999999997666 89999998754322111 1234578999988
Q ss_pred EEEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 184 VYNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.+|...|+.+|+.+..... ...+..+.+.++... ..+.....+|+||+||++||+|+..+|.++|
T Consensus 92 -~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrv~la~al~~~p~lll 163 (218)
T cd03255 92 -NLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGD-------RLNHYPSELSGGQQQRVAIARALANDPKIIL 163 (218)
T ss_pred -ccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-------hhhcChhhcCHHHHHHHHHHHHHccCCCEEE
Confidence 7888889999988754321 122233334433221 1234445567799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 164 LDEP~ 168 (218)
T cd03255 164 ADEPT 168 (218)
T ss_pred EcCCc
Confidence 99997
No 50
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.77 E-value=8.8e-21 Score=192.75 Aligned_cols=128 Identities=20% Similarity=0.222 Sum_probs=97.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|...... .+....++|++|++ .+|
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---------------~G~I~~~g~~i~~~--~~~~~~i~~v~Q~~--~l~ 87 (369)
T PRK11000 27 HEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---------------SGDLFIGEKRMNDV--PPAERGVGMVFQSY--ALY 87 (369)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCC---------------ceEEEECCEECCCC--CHhHCCEEEEeCCc--ccC
Confidence 589999999999999999999999997666 89999999754321 12234579999998 789
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+++|+.+|+.+..... ...++.+.+.++... ..+.....+|+||+||++|||||..+|.++|+|||
T Consensus 88 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-------~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEP 160 (369)
T PRK11000 88 PHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH-------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160 (369)
T ss_pred CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999998865421 122333444443321 22444456677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 161 t 161 (369)
T PRK11000 161 L 161 (369)
T ss_pred c
Confidence 6
No 51
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.77 E-value=1e-20 Score=178.80 Aligned_cols=129 Identities=22% Similarity=0.246 Sum_probs=96.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|...... ....+..++|++|++ .+|
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~--~~~ 90 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---------------AGFATVDGFDVVKE-PAEARRRLGFVSDST--GLY 90 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCCC---------------CceEEECCEEcccC-HHHHHhhEEEecCCc--ccC
Confidence 689999999999999999999999997666 89999998754321 122345678999998 788
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+..|+.+|+.++.... ...+..+.+.++... ..+.....+|+||+||++||||+..+|+++|+|||
T Consensus 91 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP 163 (218)
T cd03266 91 DRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEE-------LLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEP 163 (218)
T ss_pred cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-------HHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 8889999998754321 122233344443221 12334445667999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 164 t 164 (218)
T cd03266 164 T 164 (218)
T ss_pred C
Confidence 6
No 52
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2.3e-20 Score=178.22 Aligned_cols=130 Identities=22% Similarity=0.124 Sum_probs=95.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc---ccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER---PATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~---~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+++|+|++.+. +|+|.++|......... .....++|++|++
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~-- 91 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLERPT---------------SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHF-- 91 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCEEcccCCHHHHHHHHhheEEEccCc--
Confidence 689999999999999999999999997666 89999999754322111 1234578999998
Q ss_pred EEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 185 YNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
.+|..+|+.+|+.+..... ...+..+.+.++... ..+.....+|+||+||++||+|+..+|.++|+
T Consensus 92 ~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrv~la~al~~~p~lllL 164 (233)
T cd03258 92 NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLED-------KADAYPAQLSGGQKQRVGIARALANNPKVLLC 164 (233)
T ss_pred ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 7888889999987643211 112233334433221 12334445677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 165 DEP~ 168 (233)
T cd03258 165 DEAT 168 (233)
T ss_pred cCCC
Confidence 9997
No 53
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.77 E-value=1.1e-20 Score=187.43 Aligned_cols=129 Identities=23% Similarity=0.230 Sum_probs=95.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|...... ....+..++|++|++ .++
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~--~~~ 89 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGMISPD---------------RGKITVLGEPVPSR-ARLARVAIGVVPQFD--NLD 89 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEECccc-HHHHhhcEEEEeccc--cCC
Confidence 689999999999999999999999997666 89999998754221 122345678999998 788
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+.+|+.+|+.++.... ...++.+.+.++... ..+.....+|+||+||++||+||..+|.++|+|||
T Consensus 90 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (303)
T TIGR01288 90 PEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADVRVALLSGGMKRRLTLARALINDPQLLILDEP 162 (303)
T ss_pred cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8889999998654321 111223333332211 22444456677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 163 t 163 (303)
T TIGR01288 163 T 163 (303)
T ss_pred C
Confidence 6
No 54
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2e-20 Score=176.21 Aligned_cols=128 Identities=20% Similarity=0.226 Sum_probs=94.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|...... .......+|++|++ .++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---------------~G~i~~~g~~~~~~--~~~~~~i~~v~q~~--~~~ 84 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLERPD---------------SGEILIDGRDVTGV--PPERRNIGMVFQDY--ALF 84 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------CeEEEECCEEcCcC--chhhccEEEEcCch--hhc
Confidence 689999999999999999999999997666 89999998754321 11234578899988 677
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...|+.+|+.+..... ...+..+.+.++... ..+.+...+|+||+||++||+|+..+|.++|+|||
T Consensus 85 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEP 157 (213)
T cd03259 85 PHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG-------LLNRYPHELSGGQQQRVALARALAREPSLLLLDEP 157 (213)
T ss_pred cCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 7889999987653321 122233333333221 12334445677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 158 t 158 (213)
T cd03259 158 L 158 (213)
T ss_pred c
Confidence 7
No 55
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.77 E-value=7.7e-20 Score=184.64 Aligned_cols=130 Identities=16% Similarity=0.097 Sum_probs=100.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccccc----ccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPA----TIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~----~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+|+|+|+..++ .|+|.++|..........+ +..++|++|.+
T Consensus 17 ~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---------------~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~- 80 (363)
T TIGR01186 17 AKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---------------AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF- 80 (363)
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCCCC---------------ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC-
Confidence 589999999999999999999999997766 9999999986544322222 45689999998
Q ss_pred EEEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 184 VYNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.+|+++|+.+|+.+..... .+.+..+.+.++.. ...+.....+|+||+||++|||||..+|.++|
T Consensus 81 -~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~-------~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 81 -ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE-------EYEHRYPDELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred -cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc-------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8999999999998865431 12233334443332 12455556678899999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 153 lDEP~ 157 (363)
T TIGR01186 153 MDEAF 157 (363)
T ss_pred EeCCc
Confidence 99996
No 56
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.77 E-value=1.7e-20 Score=176.69 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=94.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc---ccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER---PATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~---~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|......... .+....+|++|.+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~-- 88 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGALTPS---------------RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDF-- 88 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCEEcccCCHHHHHHHHhheEEEecCh--
Confidence 689999999999999999999999997655 89999998754322111 1334578999998
Q ss_pred EEecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 185 YNYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
.+|...|+.+|+.+.... ....+..+.+.++... ..+.....+|+||+||++||+|+..+|.++|+
T Consensus 89 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrl~la~al~~~p~lllL 161 (214)
T TIGR02673 89 RLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEH-------KADAFPEQLSGGEQQRVAIARAIVNSPPLLLA 161 (214)
T ss_pred hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------hhhCChhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 778788999998875322 1122233333333221 12334445677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 162 DEPt 165 (214)
T TIGR02673 162 DEPT 165 (214)
T ss_pred eCCc
Confidence 9996
No 57
>KOG0058|consensus
Probab=99.76 E-value=2.2e-19 Score=188.52 Aligned_cols=162 Identities=17% Similarity=0.259 Sum_probs=115.3
Q ss_pred EEEEEeeccceeeeecC-CcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccE
Q psy2946 67 SITMKNARKNMTYVSKE-TPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPI 145 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~-t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~ 145 (455)
.|++++ +.+.|.... .+++ +|+++.+ ++|++|++|||||+||||++.+|.++.
T Consensus 465 ~IeF~~--VsFaYP~Rp~~~Vl--k~lsfti-----------~pGe~vALVGPSGsGKSTiasLL~rfY----------- 518 (716)
T KOG0058|consen 465 VIEFED--VSFAYPTRPDVPVL--KNLSFTI-----------RPGEVVALVGPSGSGKSTIASLLLRFY----------- 518 (716)
T ss_pred eEEEEE--eeeecCCCCCchhh--cCceeee-----------CCCCEEEEECCCCCCHHHHHHHHHHhc-----------
Confidence 366774 677776542 2333 3333332 699999999999999999999999995
Q ss_pred EEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHHH-HHHHHHHHhhccCC----CC
Q psy2946 146 FVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVE-RLWKSVDERMNKDS----KT 220 (455)
Q Consensus 146 ~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~-~l~~~~~~~~~~~~----~~ 220 (455)
||.+|+|.++|..+.......++..++++.|+| -+|+. |+.||+.+...... +......++....+ ..
T Consensus 519 ----~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEP--vLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p 591 (716)
T KOG0058|consen 519 ----DPTSGRILLDGVPISDINHKYLRRKIGLVGQEP--VLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITNFP 591 (716)
T ss_pred ----CCCCCeEEECCeehhhcCHHHHHHHeeeeeccc--eeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCc
Confidence 455999999999888777777888899999999 77876 99999998764211 11111111111000 01
Q ss_pred CcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 221 NSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 221 ~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
....-.+.-.|-.+|+|||||++|||||..+|.|+|+||.+
T Consensus 592 ~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEAT 632 (716)
T KOG0058|consen 592 DGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEAT 632 (716)
T ss_pred cccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechh
Confidence 11122344467788899999999999999999999999975
No 58
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.76 E-value=1.5e-20 Score=177.97 Aligned_cols=130 Identities=23% Similarity=0.156 Sum_probs=95.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc---c-ccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP---A-TIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~---~-~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|.......... . ...++|++|++
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~- 92 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---------------SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFH- 92 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccc-
Confidence 689999999999999999999999997665 899999987543221111 1 14578999998
Q ss_pred EEEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 184 VYNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.++...|+.+|+.+..... ...+..+.+.++.. ...+.....+|+||+||++||+++..+|+++|
T Consensus 93 -~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LS~G~~qrv~laral~~~p~ill 164 (221)
T TIGR02211 93 -HLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-------HRINHRPSELSGGERQRVAIARALVNQPSLVL 164 (221)
T ss_pred -ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-------hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 7888889999987743211 11222333333321 12344555677899999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 165 lDEPt 169 (221)
T TIGR02211 165 ADEPT 169 (221)
T ss_pred EeCCC
Confidence 99997
No 59
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.76 E-value=8.2e-20 Score=173.58 Aligned_cols=130 Identities=19% Similarity=0.181 Sum_probs=94.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..++ +|+|.++|..............++|++|++ .++
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~--~l~ 93 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLISPT---------------SGTLLFEGEDISTLKPEIYRQQVSYCAQTP--TLF 93 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCC---------------CCeEEECCEEcCcCCHHHHHhccEEEeccc--ccc
Confidence 799999999999999999999999987666 899999887433221112334678999988 677
Q ss_pred cCCCcccCHHHHHHHH-----HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCV-----ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-----~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+. |+.+|+.+..... ...+..+.+.++.. ....+.+...+|+|++||++||+|+..+|.++|+|||+
T Consensus 94 ~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (225)
T PRK10247 94 GD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFALP------DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEIT 165 (225)
T ss_pred cc-cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC------hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 64 9999987643221 11223333333321 11235566667789999999999999999999999997
No 60
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.76 E-value=9.6e-20 Score=174.97 Aligned_cols=130 Identities=21% Similarity=0.097 Sum_probs=93.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc---cccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE---RPATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~---~~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|........ ...+...+|++|++
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~-- 88 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLVEPS---------------SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHY-- 88 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCC---------------ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCC--
Confidence 689999999999999999999999997665 8999999975432111 11244578999998
Q ss_pred EEecCCCcccCHHHHHH---------------HHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcC
Q psy2946 185 YNYGHLTPNANLELYQH---------------CVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLR 249 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~ 249 (455)
.++...|+.+|+.+... ...+.+..+.+.++.. ...+.....+|+||+||++||+|+.
T Consensus 89 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LSgG~~qrv~la~al~ 161 (243)
T TIGR02315 89 NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-------DKAYQRADQLSGGQQQRVAIARALA 161 (243)
T ss_pred cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-------hhhcCCcccCCHHHHHHHHHHHHHh
Confidence 67878899999865211 0111222233333221 1234455567779999999999999
Q ss_pred CCEEEEecCchh
Q psy2946 250 VDNILVLDQERL 261 (455)
Q Consensus 250 ~~~~vll~DEpl 261 (455)
.+|.++|+|||+
T Consensus 162 ~~p~llllDEPt 173 (243)
T TIGR02315 162 QQPDLILADEPI 173 (243)
T ss_pred cCCCEEEEeCCc
Confidence 999999999996
No 61
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.76 E-value=8e-20 Score=200.66 Aligned_cols=163 Identities=17% Similarity=0.107 Sum_probs=114.2
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.|++++ .++.|..++.+.++ |+++.+ ++|++++|+|+||||||||+|+|+|+..+.
T Consensus 451 ~I~~~n--vsf~Y~~~~~~vL~--~isl~i-----------~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~--------- 506 (686)
T TIGR03797 451 AIEVDR--VTFRYRPDGPLILD--DVSLQI-----------EPGEFVAIVGPSGSGKSTLLRLLLGFETPE--------- 506 (686)
T ss_pred eEEEEE--EEEEcCCCCcccee--eeEEEE-----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------
Confidence 477775 77777544434333 333221 699999999999999999999999996555
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCC----Cc
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKT----NS 222 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~----~~ 222 (455)
+|+|.++|........+.++..++|++|++ ++|.. |++||+.++.....+......+..+..+.. ..
T Consensus 507 ------~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~--~lf~g-TI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G 577 (686)
T TIGR03797 507 ------SGSVFYDGQDLAGLDVQAVRRQLGVVLQNG--RLMSG-SIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMG 577 (686)
T ss_pred ------CCEEEECCEEcCcCCHHHHHhccEEEccCC--ccCcc-cHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhcccc
Confidence 999999999876665566778899999999 77765 999999886431111122222222221110 01
Q ss_pred ccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 223 SGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 223 s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
..-.+.-.|-.+|+||+||++|||||..+|+++|+|||+.
T Consensus 578 ~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS 617 (686)
T TIGR03797 578 MHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATS 617 (686)
T ss_pred ccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 1112233456678899999999999999999999999973
No 62
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1e-19 Score=172.29 Aligned_cols=129 Identities=18% Similarity=0.118 Sum_probs=95.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|...... ........+|++|++ .++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---------------~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~--~~~ 85 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---------------SGRATVAGHDVVRE-PREVRRRIGIVFQDL--SVD 85 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEecCcC-hHHHhhcEEEecCCc--ccc
Confidence 589999999999999999999999987666 89999888643221 112234578999998 678
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...|+.+|+.+..... ...+..+.+.++... ..+.+...+|+||+||++||+|+..+|.++|+|||
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEP 158 (220)
T cd03265 86 DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLE-------AADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP 158 (220)
T ss_pred ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 8889999998754321 112233334433221 23444556677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 159 t 159 (220)
T cd03265 159 T 159 (220)
T ss_pred c
Confidence 7
No 63
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.76 E-value=4.4e-20 Score=188.71 Aligned_cols=130 Identities=17% Similarity=0.097 Sum_probs=97.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|++.+. +|+|.++|..........+...+++++|.+ .++
T Consensus 27 ~~Geiv~liGpNGaGKSTLLk~LaGll~p~---------------sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~--~l~ 89 (402)
T PRK09536 27 REGSLVGLVGPNGAGKTTLLRAINGTLTPT---------------AGTVLVAGDDVEALSARAASRRVASVPQDT--SLS 89 (402)
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCCC---------------CcEEEECCEEcCcCCHHHHhcceEEEccCC--CCC
Confidence 699999999999999999999999997666 999999998654332233445689999988 777
Q ss_pred cCCCcccCHHHHHHH-----------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 188 GHLTPNANLELYQHC-----------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-----------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
..+|+.+|+.+.... ..+.++...+.++... ..+.+...+|+||+||+.|||||..+|.++|
T Consensus 90 ~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~-------~~~~~~~~LSgGerQRv~IArAL~~~P~iLL 162 (402)
T PRK09536 90 FEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ-------FADRPVTSLSGGERQRVLLARALAQATPVLL 162 (402)
T ss_pred CCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCch-------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 788999998764311 1122333344433321 2244555667799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 163 LDEPt 167 (402)
T PRK09536 163 LDEPT 167 (402)
T ss_pred EECCc
Confidence 99995
No 64
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.76 E-value=3e-20 Score=177.19 Aligned_cols=130 Identities=17% Similarity=0.193 Sum_probs=95.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc-cccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP-ATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~-~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|.......... .....+|++|++ .+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~--~~ 86 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---------------SGKILLDGQDITKLPMHKRARLGIGYLPQEA--SI 86 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------CcEEEECCEecccCCHhHHHhccEEEecCCc--cc
Confidence 589999999999999999999999997666 899999987543221111 223478899988 78
Q ss_pred ecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCc
Q psy2946 187 YGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE 259 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DE 259 (455)
+..+|+.+|+.+..... ...++.+.+.++.. ...+.....+|+||+||++||+|+..+|.++|+||
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 159 (232)
T cd03218 87 FRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-------HLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159 (232)
T ss_pred cccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 88889999998754321 11122333333221 12344555667799999999999999999999999
Q ss_pred hh
Q psy2946 260 RL 261 (455)
Q Consensus 260 pl 261 (455)
|+
T Consensus 160 Pt 161 (232)
T cd03218 160 PF 161 (232)
T ss_pred Cc
Confidence 97
No 65
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2e-20 Score=182.74 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=93.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|..........++..++|++|++. .++
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---------------~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~-~~~ 96 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLLKPQ---------------SGEIKIDGITISKENLKEIRKKIGIIFQNPD-NQF 96 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------CceEEECCEecCcCCHHHHhcceEEEEeCHH-Hhc
Confidence 699999999999999999999999997665 8999999975432211223445789998862 134
Q ss_pred cCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...|+.+|+.+.... ....+..+.++++... ..+...-.+|+||+||++|||||..+|.++|+|||
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 169 (271)
T PRK13632 97 IGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMED-------YLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDES 169 (271)
T ss_pred CcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHH-------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 457999999775322 1112233333333221 12334445677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 170 ~ 170 (271)
T PRK13632 170 T 170 (271)
T ss_pred c
Confidence 6
No 66
>PRK10908 cell division protein FtsE; Provisional
Probab=99.76 E-value=2.3e-20 Score=176.89 Aligned_cols=130 Identities=14% Similarity=0.080 Sum_probs=94.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc---ccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER---PATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~---~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+++|+|+..++ +|+|.++|......... ..+...+|++|++
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~-- 88 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIERPS---------------AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDH-- 88 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEEcccCChhHHHHHHhheEEEecCc--
Confidence 589999999999999999999999997655 89999998754322111 1234578999998
Q ss_pred EEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 185 YNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
.++...|+.+|+.+..... ...+..+.+.++... ..+.....+|+||+||++||+|+..+|.++|+
T Consensus 89 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (222)
T PRK10908 89 HLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD-------KAKNFPIQLSGGEQQRVGIARAVVNKPAVLLA 161 (222)
T ss_pred cccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh-------hhhCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 6777789999987753221 111223333332211 12444556677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 162 DEPt 165 (222)
T PRK10908 162 DEPT 165 (222)
T ss_pred eCCC
Confidence 9997
No 67
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.76 E-value=2.9e-19 Score=180.26 Aligned_cols=148 Identities=19% Similarity=0.142 Sum_probs=109.7
Q ss_pred hhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeee
Q psy2946 88 YYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIG 163 (455)
Q Consensus 88 ~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~ 163 (455)
+..+++|.|.+ ..|++++ .+|++.+++|+||||||||+++|.|++.|+ +|+|.++|...
T Consensus 6 ~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---------------~GeI~v~G~~v 68 (501)
T COG3845 6 EMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---------------SGEIRVDGKEV 68 (501)
T ss_pred EEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---------------cceEEECCEEe
Confidence 33445555553 3344443 799999999999999999999999998877 99999999954
Q ss_pred -ccccccccccCCCCcccCceEEEecCCCcccCHHHHHHH----------HHHHHHHHHHhhccCCCCCcccEEEecCCC
Q psy2946 164 -ALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHC----------VERLWKSVDERMNKDSKTNSSGMIINTCGW 232 (455)
Q Consensus 164 -~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~----------~~~l~~~~~~~~~~~~~~~~s~~iint~g~ 232 (455)
...+.+..+..+|+++|.+ .+++.+|+.||+.+.... ..+..+.+.++++.... ....+-|
T Consensus 69 ~~~sP~dA~~~GIGMVhQHF--~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd--p~~~V~d---- 140 (501)
T COG3845 69 RIKSPRDAIRLGIGMVHQHF--MLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD--PDAKVAD---- 140 (501)
T ss_pred ccCCHHHHHHcCCcEEeecc--ccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCC--ccceeec----
Confidence 3333445677899999999 899999999999987642 23334444555544322 1112223
Q ss_pred ccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 233 IKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 233 ~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
++.|++||++|.++|..++.++|+|||+
T Consensus 141 -LsVG~qQRVEIlKaLyr~a~iLILDEPT 168 (501)
T COG3845 141 -LSVGEQQRVEILKALYRGARLLILDEPT 168 (501)
T ss_pred -CCcchhHHHHHHHHHhcCCCEEEEcCCc
Confidence 3459999999999999999999999995
No 68
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.76 E-value=3e-20 Score=174.64 Aligned_cols=131 Identities=22% Similarity=0.204 Sum_probs=93.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|..............++|++|++. ..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~-~~~ 88 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---------------SGEVLVDGKDLTKLSLKELRRKVGLVFQNPD-DQF 88 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCC---------------CceEEECCEEcccCCHHHHHhhceEEecChh-hhc
Confidence 689999999999999999999999997666 8999999875432211223445788998862 124
Q ss_pred cCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...|+.+|+.+.... ....+..+.+.++... ..+.....+|+||+||++||||+..+|.++|+|||
T Consensus 89 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 161 (211)
T cd03225 89 FGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEG-------LRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEP 161 (211)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHh-------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 467999998764321 1122233333333221 12344455677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 162 t 162 (211)
T cd03225 162 T 162 (211)
T ss_pred c
Confidence 7
No 69
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.75 E-value=5.9e-20 Score=174.63 Aligned_cols=133 Identities=17% Similarity=0.119 Sum_probs=94.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc---cccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE---RPATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~---~~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|........ ...+...+|++|++..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLKPT---------------SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMS 93 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCEEccccchhhHHHhhccEEEEecCchh
Confidence 689999999999999999999999997665 8999999875433211 1234467889998733
Q ss_pred EEecCCCcccCHHHHHHHH-----HHH----HHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEE
Q psy2946 185 YNYGHLTPNANLELYQHCV-----ERL----WKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILV 255 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~-----~~l----~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vl 255 (455)
.++...|+.+|+.+..... ... +..+.+.++.. ....+.....+|+||+||++||||+..+|+++
T Consensus 94 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 167 (228)
T cd03257 94 SLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP------EEVLNRYPHELSGGQRQRVAIARALALNPKLL 167 (228)
T ss_pred hcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC------hhHhhCCchhcCHHHHHHHHHHHHHhcCCCEE
Confidence 3566789999987643221 011 11222232221 11234455566779999999999999999999
Q ss_pred ecCchh
Q psy2946 256 LDQERL 261 (455)
Q Consensus 256 l~DEpl 261 (455)
|+|||+
T Consensus 168 lLDEPt 173 (228)
T cd03257 168 IADEPT 173 (228)
T ss_pred EecCCC
Confidence 999997
No 70
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.75 E-value=3e-20 Score=186.10 Aligned_cols=133 Identities=15% Similarity=0.094 Sum_probs=98.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc---ccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER---PATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~---~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|......... .++..++|++|++..
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---------------~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~ 109 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLVKAT---------------DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA 109 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCCCC---------------CcEEEECCEECCcCCHHHHHHHhCceEEEecCchh
Confidence 799999999999999999999999997655 89999999865432211 234568999999854
Q ss_pred EEecCCCcccCHHHHHHHH---------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEE
Q psy2946 185 YNYGHLTPNANLELYQHCV---------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILV 255 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~---------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vl 255 (455)
.+++.+|+.+|+.+..... .+.+..+.+.++.. ..+.+.....+|+||+||++||+||+.+|.++
T Consensus 110 ~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~------~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ll 183 (331)
T PRK15079 110 SLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLL------PNLINRYPHEFSGGQCQRIGIARALILEPKLI 183 (331)
T ss_pred hcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC------hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 5788889999987643321 11223333333321 12345556677889999999999999999999
Q ss_pred ecCchh
Q psy2946 256 LDQERL 261 (455)
Q Consensus 256 l~DEpl 261 (455)
|+|||+
T Consensus 184 ilDEPt 189 (331)
T PRK15079 184 ICDEPV 189 (331)
T ss_pred EEeCCC
Confidence 999996
No 71
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=4e-20 Score=177.64 Aligned_cols=132 Identities=16% Similarity=0.170 Sum_probs=96.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|...............+|++|++ .++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~--~~~ 87 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLIEPT---------------SGEIFIDGEDIREQDPVELRRKIGYVIQQI--GLF 87 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------CceEEECCeEcCcCChHHhhcceEEEccCc--ccc
Confidence 689999999999999999999999987665 899999987543222222344678999998 788
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...|+.+|+.++.... ...+..+.+.++.... -..+.....+|+||+||++||+|+..+|.++|+|||
T Consensus 88 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 162 (242)
T cd03295 88 PHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA-----EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEP 162 (242)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH-----HHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 8889999998754321 1122333344333210 012444455677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 163 t 163 (242)
T cd03295 163 F 163 (242)
T ss_pred c
Confidence 6
No 72
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.75 E-value=2.8e-20 Score=177.06 Aligned_cols=130 Identities=22% Similarity=0.152 Sum_probs=94.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc---c-ccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP---A-TIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~---~-~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+++|+|+..++ +|+|.++|.......... . ...++|++|.+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---------------~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~- 97 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDDGS---------------SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSF- 97 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCC---------------CeeEEECCEEcccCCHHHHHHHHhheEEEEEccc-
Confidence 689999999999999999999999997665 899999997543221110 1 23578899998
Q ss_pred EEEecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 184 VYNYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.++...|+.+|+.+.... ..+.+..+.+.++... ..+.....+|+||+||++||+||..+|.++|
T Consensus 98 -~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~Ge~qrl~la~al~~~p~lll 169 (228)
T PRK10584 98 -MLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGK-------RLDHLPAQLSGGEQQRVALARAFNGRPDVLF 169 (228)
T ss_pred -ccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 788888999998764321 1122233334433221 1233344567799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 170 lDEPt 174 (228)
T PRK10584 170 ADEPT 174 (228)
T ss_pred EeCCC
Confidence 99997
No 73
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=5.2e-20 Score=179.26 Aligned_cols=130 Identities=12% Similarity=-0.001 Sum_probs=93.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|...........+..++|++|++ .++
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~--~~~ 97 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---------------EGEILLDAQPLESWSSKAFARKVAYLPQQL--PAA 97 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCCC---------------CCEEEECCEehhhCCHHHHhhheEEeccCC--CCC
Confidence 689999999999999999999999986655 899999997543222222334578888887 566
Q ss_pred cCCCcccCHHHHHH-----------HHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 188 GHLTPNANLELYQH-----------CVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 188 g~~sv~~n~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
..+|+.+|+.+... .....++.+.+.++... ..+.....+|+||+||++||+|+..+|+++|
T Consensus 98 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LSgG~~qrv~laral~~~p~lll 170 (265)
T PRK10575 98 EGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP-------LAHRLVDSLSGGERQRAWIAMLVAQDSRCLL 170 (265)
T ss_pred CCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 77899998875321 11112233333333211 2344444567799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 171 LDEPt 175 (265)
T PRK10575 171 LDEPT 175 (265)
T ss_pred EcCCc
Confidence 99996
No 74
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=3.2e-20 Score=177.95 Aligned_cols=128 Identities=18% Similarity=0.182 Sum_probs=93.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|...... ......++|++|++ .++
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~~~~~--~~~~~~i~~v~q~~--~~~ 86 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLERPD---------------SGTILFGGEDATDV--PVQERNVGFVFQHY--ALF 86 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEECCcC--CccccceEEEecCC--ccc
Confidence 589999999999999999999999997665 89999998753321 11234578999998 778
Q ss_pred cCCCcccCHHHHHHHH-----------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 188 GHLTPNANLELYQHCV-----------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-----------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
...|+.+|+.+..... ...+..+.+.++... ..+.....+|+||+||++||+||..+|.++|
T Consensus 87 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrl~la~al~~~p~lll 159 (239)
T cd03296 87 RHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW-------LADRYPAQLSGGQRQRVALARALAVEPKVLL 159 (239)
T ss_pred CCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh-------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8889999988753221 111222333332211 1233444567799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 160 lDEP~ 164 (239)
T cd03296 160 LDEPF 164 (239)
T ss_pred EcCCc
Confidence 99997
No 75
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.75 E-value=3.7e-20 Score=174.27 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=94.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|++.+. +|+|.++|....... ......+|++|.+ .++
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---------------~G~v~~~g~~~~~~~--~~~~~i~~~~q~~--~~~ 84 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---------------SGRIYIGGRDVTDLP--PKDRDIAMVFQNY--ALY 84 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEECCcCC--cccceEEEEecCh--hhc
Confidence 689999999999999999999999997666 899999887543221 1224578899988 677
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...|+.+|+.+..... .+.++.+.++++... ..+......|+||+||++||+|+..+|+++|+|||
T Consensus 85 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP 157 (213)
T cd03301 85 PHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH-------LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157 (213)
T ss_pred cCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-------HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 7889999988753321 112233333332211 22444455677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 158 t 158 (213)
T cd03301 158 L 158 (213)
T ss_pred c
Confidence 6
No 76
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.6e-19 Score=183.46 Aligned_cols=137 Identities=22% Similarity=0.199 Sum_probs=106.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|+.++|+|+||||||||+++|+|++.++ +|+|.++|..........++...+|++|+| ++|
T Consensus 345 ~~g~~talvG~SGaGKSTLl~lL~G~~~~~---------------~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p--~lf 407 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLLNLLLGFLAPT---------------QGEIRVNGIDLRDLSPEAWRKQISWVSQNP--YLF 407 (559)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCcCCCC---------------CceEEECCccccccCHHHHHhHeeeeCCCC--ccc
Confidence 699999999999999999999999998777 999999999887776777888899999999 777
Q ss_pred cCCCcccCHHHHHHHH-HHHHHHHHHhhccCCCCC---cccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 188 GHLTPNANLELYQHCV-ERLWKSVDERMNKDSKTN---SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-~~l~~~~~~~~~~~~~~~---~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
.. |++||+.++.... ++......++.+..+... ....++.-.|-..|+||+||+++||||..++.++++|||+.
T Consensus 408 ~g-TireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA 485 (559)
T COG4988 408 AG-TIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTA 485 (559)
T ss_pred cc-cHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCcc
Confidence 76 9999999876532 222223333322222111 11223344566678899999999999999999999999973
No 77
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.1e-19 Score=175.37 Aligned_cols=139 Identities=16% Similarity=0.052 Sum_probs=96.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. . -.|.+|+|.++|...........+..++|++|++ .++
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~-------~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~--~~~ 94 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLIELY---P-------EARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIP--NPI 94 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCC---C-------CCCCceEEEECCEECCcCCHHHHhccEEEEeccC--ccC
Confidence 589999999999999999999999986531 0 0123899999997543322223345678999998 677
Q ss_pred cCCCcccCHHHHHHHH---------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecC
Q psy2946 188 GHLTPNANLELYQHCV---------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~---------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~D 258 (455)
...|+.+|+.+..... .+......+.++..... .-..+.+...+|+||+||++||||+..+|.++|+|
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD 171 (250)
T PRK14247 95 PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV---KDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLAD 171 (250)
T ss_pred CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch---hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 8889999998754211 11122233333321100 01235555667789999999999999999999999
Q ss_pred chh
Q psy2946 259 ERL 261 (455)
Q Consensus 259 Epl 261 (455)
||+
T Consensus 172 EP~ 174 (250)
T PRK14247 172 EPT 174 (250)
T ss_pred CCC
Confidence 997
No 78
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=2.1e-20 Score=183.35 Aligned_cols=131 Identities=15% Similarity=0.091 Sum_probs=95.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|...........+..++|++|++. .++
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~-~~~ 94 (279)
T PRK13650 31 KQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---------------SGQIIIDGDLLTEENVWDIRHKIGMVFQNPD-NQF 94 (279)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------CcEEEECCEECCcCcHHHHHhhceEEEcChH-Hhc
Confidence 689999999999999999999999997665 8999999975432211223456889999872 244
Q ss_pred cCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...|+.+|+.+.... ..+.+..+.+.++... ..|.....+|+||+||++||+||..+|.++|+|||
T Consensus 95 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-------~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP 167 (279)
T PRK13650 95 VGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQD-------FKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEA 167 (279)
T ss_pred ccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHh-------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 556999999865322 1122333344433221 23445566778999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 168 t 168 (279)
T PRK13650 168 T 168 (279)
T ss_pred c
Confidence 6
No 79
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=2.1e-19 Score=183.59 Aligned_cols=130 Identities=16% Similarity=0.136 Sum_probs=97.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc----cccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP----ATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~----~~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|.......... .+..++|++|++
T Consensus 52 ~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---------------sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~- 115 (400)
T PRK10070 52 EEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---------------RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSF- 115 (400)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCC---------------CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCC-
Confidence 799999999999999999999999997666 899999998643321111 124578999998
Q ss_pred EEEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 184 VYNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.+|.++|+.+|+.+..... ...+.++.+.++... ..+.....+|+||+||++|||||..+|.++|
T Consensus 116 -~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~-------~~~~~~~~LSgGq~QRv~LArAL~~~P~iLL 187 (400)
T PRK10070 116 -ALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLEN-------YAHSYPDELSGGMRQRVGLARALAINPDILL 187 (400)
T ss_pred -cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh-------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7888899999998764321 122333344443321 2344455677799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 188 LDEPt 192 (400)
T PRK10070 188 MDEAF 192 (400)
T ss_pred EECCC
Confidence 99996
No 80
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.75 E-value=6e-20 Score=175.60 Aligned_cols=130 Identities=20% Similarity=0.194 Sum_probs=94.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc-cccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP-ATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~-~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|.......... .+..++|++|.+ .+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~--~l 86 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFLRPT---------------SGSVLFDGEDITGLPPHEIARLGIGRTFQIP--RL 86 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCC---------------CceEEECCEECCCCCHHHHHhcCEEEEeccc--cc
Confidence 589999999999999999999999997665 899999887543211111 123478899988 78
Q ss_pred ecCCCcccCHHHHHHHH-----------------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcC
Q psy2946 187 YGHLTPNANLELYQHCV-----------------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLR 249 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~~-----------------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~ 249 (455)
+..+|+.+|+.+..... ...+..+.+.++.. ...+.....+|+||+||++||+|+.
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LSgG~~qrv~la~al~ 159 (236)
T cd03219 87 FPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-------DLADRPAGELSYGQQRRLEIARALA 159 (236)
T ss_pred ccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-------chhhCChhhCCHHHHHHHHHHHHHh
Confidence 88889999987754321 11122233333221 1234555566779999999999999
Q ss_pred CCEEEEecCchh
Q psy2946 250 VDNILVLDQERL 261 (455)
Q Consensus 250 ~~~~vll~DEpl 261 (455)
.+|.++|+|||+
T Consensus 160 ~~p~llllDEPt 171 (236)
T cd03219 160 TDPKLLLLDEPA 171 (236)
T ss_pred cCCCEEEEcCCc
Confidence 999999999996
No 81
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=2.6e-20 Score=182.68 Aligned_cols=131 Identities=18% Similarity=0.150 Sum_probs=94.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|++.+. +|+|.++|..............++|++|++. .++
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---------------~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~-~~~ 94 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---------------AGTITVGGMVLSEETVWDVRRQVGMVFQNPD-NQF 94 (279)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCC---------------CcEEEECCEECCcCcHHHHhhheEEEEeCHH-Hhc
Confidence 689999999999999999999999997666 9999999986543222223456789999872 134
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...|+.+|+.+..... .+.+..+.+.++... .++.....+|+||+||++||+||..+|.++|+|||
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 167 (279)
T PRK13635 95 VGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMED-------FLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEA 167 (279)
T ss_pred ccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChh-------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4569999997753221 112233333333221 23344445677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 168 t 168 (279)
T PRK13635 168 T 168 (279)
T ss_pred c
Confidence 6
No 82
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.75 E-value=9.5e-20 Score=170.50 Aligned_cols=129 Identities=19% Similarity=0.118 Sum_probs=95.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|...... ........+|++|.+ .++
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---------------~G~v~~~g~~~~~~-~~~~~~~~~~~~~~~--~~~ 86 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLARPD---------------AGEVLWQGEPIRRQ-RDEYHQDLLYLGHQP--GIK 86 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------CcEEEECCEEcccc-hHHhhhheEEeCCcc--ccC
Confidence 589999999999999999999999997666 89999988753321 112334567888877 678
Q ss_pred cCCCcccCHHHHHHHH----HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCV----ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~----~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+..|+.+|+.++.... ....+.+.+.++... ..+.+...+|+||+||++||+|+..+|.++|+|||+
T Consensus 87 ~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 157 (204)
T PRK13538 87 TELTALENLRFYQRLHGPGDDEALWEALAQVGLAG-------FEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF 157 (204)
T ss_pred cCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHH-------HhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 8889999998765431 122333444433221 124555667789999999999999999999999996
No 83
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.75 E-value=1.1e-19 Score=176.00 Aligned_cols=125 Identities=19% Similarity=0.058 Sum_probs=93.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|.... .....++|++|.+ .++
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---------------~G~i~~~g~~~~-----~~~~~i~~v~q~~--~l~ 93 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLETPS---------------AGELLAGTAPLA-----EAREDTRLMFQDA--RLL 93 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------CeEEEECCEEHH-----HhhCceEEEecCc--cCC
Confidence 689999999999999999999999997665 888888776421 2234578899988 778
Q ss_pred cCCCcccCHHHHHHH-HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHC-VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+..|+.+|+.+.... ....+..+.+.++... ..+.....+|+||+||++||++|..+|+++|+|||+
T Consensus 94 ~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt 161 (257)
T PRK11247 94 PWKKVIDNVGLGLKGQWRDAALQALAAVGLAD-------RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL 161 (257)
T ss_pred CCCcHHHHHHhcccchHHHHHHHHHHHcCChh-------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 888999998764311 1222333444443321 123344556779999999999999999999999996
No 84
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.75 E-value=4.5e-19 Score=166.31 Aligned_cols=128 Identities=23% Similarity=0.173 Sum_probs=95.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|...... .......+|++|++ .++
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~~~~~--~~~~~~i~~~~q~~--~~~ 84 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLIKPD---------------SGEITFDGKSYQKN--IEALRRIGALIEAP--GFY 84 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCCC---------------ceEEEECCCcccch--HHHHhhEEEecCCC--ccC
Confidence 589999999999999999999999997666 89999988754322 22334578899988 678
Q ss_pred cCCCcccCHHHHHHHH---HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCV---ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~---~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...|+.+|+.++.... .+..+.+.+.++... ..+.....+|+||+||++||+|+..+|.++|+|||+
T Consensus 85 ~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 154 (208)
T cd03268 85 PNLTARENLRLLARLLGIRKKRIDEVLDVVGLKD-------SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT 154 (208)
T ss_pred ccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-------HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 8889999998765321 222333334433221 123444556779999999999999999999999997
No 85
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.74 E-value=4.3e-20 Score=176.75 Aligned_cols=129 Identities=21% Similarity=0.176 Sum_probs=94.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|........ ......+|++|++ .++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---------------~G~i~~~g~~i~~~~~-~~~~~i~~~~q~~--~~~ 86 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---------------EGQISVAGHDLRRAPR-AALARLGVVFQQP--TLD 86 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCC---------------ceEEEECCEEcccCCh-hhhhhEEEeCCCC--CCc
Confidence 589999999999999999999999997666 8999998875432211 1223578899988 676
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...|+.+|+.++.... ...+..+.+.++... ..+.....+|+||+||++||+|+..+|.++|+|||
T Consensus 87 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 159 (236)
T TIGR03864 87 LDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-------RADDKVRELNGGHRRRVEIARALLHRPALLLLDEP 159 (236)
T ss_pred ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 7789999987754321 112233333333211 23445556777999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 160 ~ 160 (236)
T TIGR03864 160 T 160 (236)
T ss_pred c
Confidence 7
No 86
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=4e-19 Score=167.29 Aligned_cols=128 Identities=18% Similarity=0.217 Sum_probs=99.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc----cccccCCCCcccCceEEE
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE----RPATIEDGFSQLAPIVYN 186 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~----~~~~~~~~~~~q~p~~~~ 186 (455)
.+++|.|++|||||||+|+|+|+..++ +|.|.++|........ .+-...+||+||+. .+
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPd---------------eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDA--RL 87 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPD---------------EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDA--RL 87 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCcc---------------ccEEEECCEEeecccCCcccChhhheeeeEeecc--cc
Confidence 699999999999999999999998877 9999999986443211 13345689999999 99
Q ss_pred ecCCCcccCHHHHHHHH-HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 187 YGHLTPNANLELYQHCV-ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~~-~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
|+++||+.|+.+..... ....+.+...++... ..+-.+..+|+|+|||++|+|||..+|.++++|||+.
T Consensus 88 FpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~h-------LL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLa 157 (352)
T COG4148 88 FPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEH-------LLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLA 157 (352)
T ss_pred ccceEEecchhhhhcccchHhHHHHHHHhCcHH-------HHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchh
Confidence 99999999999977654 223444444444322 2233444566799999999999999999999999974
No 87
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=4.6e-20 Score=180.02 Aligned_cols=131 Identities=15% Similarity=0.047 Sum_probs=93.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+++|+|+..+. +|+|.++|...........+..++|++|++.. ++
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---------------~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~-~~ 96 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---------------SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDN-QF 96 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------ceEEEECCEECCcCCHHHHHhheeEEEeChHH-hc
Confidence 699999999999999999999999997665 89999999754322112234457899998721 34
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...++.+|+.+..... ...+..+.+.++.. -..+.....+|+||+||++||||+..+|+++|+|||
T Consensus 97 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 169 (269)
T PRK13648 97 VGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML-------ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEA 169 (269)
T ss_pred ccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc-------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4567888876643221 11222333333321 123445556777999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 170 t 170 (269)
T PRK13648 170 T 170 (269)
T ss_pred c
Confidence 7
No 88
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.2e-19 Score=174.17 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=95.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc-cccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE-RPATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~-~~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|........ ...+..++|++|.+ .+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~--~~ 89 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---------------AGNIIIDDEDISLLPLHARARRGIGYLPQEA--SI 89 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------CcEEEECCEECCCCCHHHHHHhCeEEeccCC--cc
Confidence 689999999999999999999999997666 8999999975432211 11234578999998 78
Q ss_pred ecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecC
Q psy2946 187 YGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~D 258 (455)
+..+|+.+|+.++.... ...+..+.+.++... ..+.....+|+||+||++||+|+..+|.++|+|
T Consensus 90 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (241)
T PRK10895 90 FRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-------LRDSMGQSLSGGERRRVEIARALAANPKFILLD 162 (241)
T ss_pred cccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-------HhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 88889999987653211 112233333332211 124444556779999999999999999999999
Q ss_pred chh
Q psy2946 259 ERL 261 (455)
Q Consensus 259 Epl 261 (455)
||+
T Consensus 163 EPt 165 (241)
T PRK10895 163 EPF 165 (241)
T ss_pred CCc
Confidence 997
No 89
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.74 E-value=3.4e-20 Score=183.74 Aligned_cols=129 Identities=18% Similarity=0.155 Sum_probs=97.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|...... ....+...+|++|.+ .++
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---------------~G~i~i~g~~~~~~-~~~~~~~ig~~~q~~--~l~ 87 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYLPPD---------------SGSVQVCGEDVLQN-PKEVQRNIGYLPEHN--PLY 87 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEEcccC-hHHHHhceEEecCCC--CCC
Confidence 589999999999999999999999997666 89999999754331 123445689999998 788
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+.+|+.+|+.++.... ...++.+.+.++.... .|...-.+|+||+||++||+|+..+|.++|+|||
T Consensus 88 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEP 160 (301)
T TIGR03522 88 LDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE-------QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEP 160 (301)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-------hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 8899999998765432 1223334444433221 1333344566999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 161 t 161 (301)
T TIGR03522 161 T 161 (301)
T ss_pred c
Confidence 6
No 90
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.2e-19 Score=173.65 Aligned_cols=139 Identities=17% Similarity=0.095 Sum_probs=95.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecc--ccccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGAL--VIERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~--~~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+..+. ... |.+|+|.++|..... ......+..++|++|++ .
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~~~-------~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~--~ 95 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLLELN---EEA-------RVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYP--N 95 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCcc---cCC-------CCceEEEECCEEccccccChHHHhhceeEEecCC--c
Confidence 689999999999999999999999987541 000 227999999875431 11112344678999998 7
Q ss_pred EecCCCcccCHHHHHHHH------H---HHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 186 NYGHLTPNANLELYQHCV------E---RLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~------~---~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
+|...|+.+|+.+..... . ..+..+.+.++..... ....+.....+|+|++||++||||+..+|+++|
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 172 (253)
T PRK14267 96 PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV---KDRLNDYPSNLSGGQRQRLVIARALAMKPKILL 172 (253)
T ss_pred cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch---hhhhccChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 788889999997653211 1 1122223333221100 012345556678899999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 173 lDEP~ 177 (253)
T PRK14267 173 MDEPT 177 (253)
T ss_pred EcCCC
Confidence 99996
No 91
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.74 E-value=7.6e-20 Score=173.20 Aligned_cols=131 Identities=19% Similarity=0.146 Sum_probs=94.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc-ccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER-PATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~-~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+++|+|+..++ +|+|.++|......... ..+..++|++|++ .+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~--~~ 86 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLLPPR---------------SGSIRFDGRDITGLPPHERARAGIGYVPEGR--RI 86 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCEEcCCCCHHHHHhcCeEEecccc--cc
Confidence 589999999999999999999999997666 89999998753322111 1234578999998 78
Q ss_pred ecCCCcccCHHHHHHHH-----HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 187 YGHLTPNANLELYQHCV-----ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~~-----~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+..+|+.+|+.+..... ......+.+.+.. . ....+.....+|+||+||++||||+..+|.++|+|||+
T Consensus 87 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-----l-~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 87 FPELTVEENLLLGAYARRRAKRKARLERVYELFPR-----L-KERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred CCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHh-----h-hhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 88889999988754321 1112222222210 0 11124444556779999999999999999999999996
No 92
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.74 E-value=3.3e-19 Score=171.19 Aligned_cols=130 Identities=23% Similarity=0.202 Sum_probs=95.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc-ccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER-PATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~-~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|......... ..+...+|++|.+ .+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---------------~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~--~~ 88 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGKTRPD---------------EGSVLFGGTDLTGLPEHQIARAGIGRKFQKP--TV 88 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------CCeEEECCeecCCCCHHHHHhcCeeEecccc--cc
Confidence 699999999999999999999999997665 89999998743221111 1233578999988 78
Q ss_pred ecCCCcccCHHHHHHH---------------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCC
Q psy2946 187 YGHLTPNANLELYQHC---------------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVD 251 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~---------------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~ 251 (455)
+..+|+.+|+.+.... ....++.+.+.++... ..+.....+|+|++||++||||+..+
T Consensus 89 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~Ge~qrv~laral~~~ 161 (242)
T TIGR03411 89 FENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-------EADRLAGLLSHGQKQWLEIGMLLMQD 161 (242)
T ss_pred CCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-------hhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 8888999998875321 1112233333333221 22444455677999999999999999
Q ss_pred EEEEecCchh
Q psy2946 252 NILVLDQERL 261 (455)
Q Consensus 252 ~~vll~DEpl 261 (455)
|.++|+|||+
T Consensus 162 p~~lllDEPt 171 (242)
T TIGR03411 162 PKLLLLDEPV 171 (242)
T ss_pred CCEEEecCCc
Confidence 9999999997
No 93
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=6e-20 Score=177.80 Aligned_cols=125 Identities=15% Similarity=0.222 Sum_probs=93.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..++ +|+|.++|..... .....+|++|.+ .++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~-----~~~~~~~v~q~~--~~~ 82 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---------------HGSITLDGKPVEG-----PGAERGVVFQNE--GLL 82 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CcEEEECCEECCC-----CCCcEEEEeCCC--ccC
Confidence 689999999999999999999999997665 8999998875322 112368889988 778
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...|+.+|+.+..... ...+..+.+.++... ..+.....+|+||+||++||+|+..+|.++|+|||
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEP 155 (255)
T PRK11248 83 PWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG-------AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEP 155 (255)
T ss_pred CCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8889999987653221 112233333333211 22445556777999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 156 t 156 (255)
T PRK11248 156 F 156 (255)
T ss_pred C
Confidence 7
No 94
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.74 E-value=3.4e-19 Score=176.75 Aligned_cols=129 Identities=19% Similarity=0.130 Sum_probs=97.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|++.++ +|+|.++|...... ....+..++|++|.+ .++
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~--~~~ 78 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLLRPT---------------SGTARVAGYDVVRE-PRKVRRSIGIVPQYA--SVD 78 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEEcccC-HHHHHhhcEEecCCC--CCC
Confidence 589999999999999999999999997666 89999999754321 112344689999998 788
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+.+|+.+|+.++.... ...++.+.+.++... ..|.....+|+||+||++||+||..+|.++|+|||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 151 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGE-------AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEP 151 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------HhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8899999998765431 112333444443321 12334445677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 152 t 152 (302)
T TIGR01188 152 T 152 (302)
T ss_pred C
Confidence 6
No 95
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.74 E-value=4.7e-19 Score=169.46 Aligned_cols=130 Identities=19% Similarity=0.119 Sum_probs=103.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc----cccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP----ATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~----~~~~~~~~~q~p~ 183 (455)
..|+++.|+|-+|||||||+|+|.++..++ .|+|.++|........+. .+...+++||+.
T Consensus 52 ~~GeIfViMGLSGSGKSTLvR~~NrLiept---------------~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F- 115 (386)
T COG4175 52 EEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---------------RGEILVDGKDIAKLSAAELRELRRKKISMVFQSF- 115 (386)
T ss_pred cCCeEEEEEecCCCCHHHHHHHHhccCCCC---------------CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh-
Confidence 899999999999999999999999997655 999999999776654443 345679999998
Q ss_pred EEEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 184 VYNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.++++.|+.+|..|.++.. ++.+.+..+.++..... +.....+|+||+||+.|||||+.+|+|++
T Consensus 116 -aLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~-------~~yp~eLSGGMqQRVGLARAla~~~~IlL 187 (386)
T COG4175 116 -ALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA-------DKYPNELSGGMQQRVGLARALANDPDILL 187 (386)
T ss_pred -ccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhh-------hcCcccccchHHHHHHHHHHHccCCCEEE
Confidence 8999999999999987652 33444555554443221 22334556799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+||+|
T Consensus 188 MDEaF 192 (386)
T COG4175 188 MDEAF 192 (386)
T ss_pred ecCch
Confidence 99986
No 96
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.74 E-value=1.8e-19 Score=198.57 Aligned_cols=163 Identities=13% Similarity=0.153 Sum_probs=113.8
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.|++++ ..+.|...+.+.++-.|++. ++|++++|+|+||||||||+|+|+|+..+.
T Consensus 477 ~I~~~~--vsf~y~~~~~~vL~~isl~i-------------~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~--------- 532 (710)
T TIGR03796 477 YVELRN--ITFGYSPLEPPLIENFSLTL-------------QPGQRVALVGGSGSGKSTIAKLVAGLYQPW--------- 532 (710)
T ss_pred eEEEEE--EEEecCCCCCCcccceeEEE-------------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------
Confidence 477775 77777654444433222222 699999999999999999999999996555
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHH-HHHHHHHHHHHhhccCCC----CC
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQH-CVERLWKSVDERMNKDSK----TN 221 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~-~~~~l~~~~~~~~~~~~~----~~ 221 (455)
+|+|.++|..........++..++|++|++ ++|.. |++||+.++.. ...+......+..+.++. ..
T Consensus 533 ------~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~--~lf~g-Ti~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~ 603 (710)
T TIGR03796 533 ------SGEILFDGIPREEIPREVLANSVAMVDQDI--FLFEG-TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPG 603 (710)
T ss_pred ------CcEEEECCEeHHHCCHHHHHhheeEEecCC--hhhhc-cHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcC
Confidence 999999998776655556677899999999 77765 99999987531 111111122222221111 01
Q ss_pred cccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 222 SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 222 ~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
...-.+.-.|-.+|+||+||++|||||..+|+++|+|||+.
T Consensus 604 gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS 644 (710)
T TIGR03796 604 GYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATS 644 (710)
T ss_pred cccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccc
Confidence 11123334466778899999999999999999999999973
No 97
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.3e-19 Score=177.20 Aligned_cols=131 Identities=21% Similarity=0.140 Sum_probs=94.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..++ +|+|.++|..............++|++|++...++
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (274)
T PRK13647 29 PEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---------------RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVF 93 (274)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCC---------------ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhc
Confidence 689999999999999999999999997666 89999999754322222234457899998732233
Q ss_pred cCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
..|+.+|+.+.... ..+.+..+.+.++... ..+.....+|+||+||++||+||..+|+++|+|||
T Consensus 94 -~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEP 165 (274)
T PRK13647 94 -SSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWD-------FRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEP 165 (274)
T ss_pred -cCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 46999999875431 1122233333333211 23444556777999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 166 t 166 (274)
T PRK13647 166 M 166 (274)
T ss_pred C
Confidence 6
No 98
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.74 E-value=1.6e-19 Score=171.62 Aligned_cols=129 Identities=17% Similarity=0.124 Sum_probs=92.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH-----hcCCCCCCccEEEecCCCCCcCCCCCeeecccc--ccccccCCCCccc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA-----VRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI--ERPATIEDGFSQL 180 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~-----~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~--~~~~~~~~~~~~q 180 (455)
.+|++++|+|+||||||||+|+|+|+. .+. +|+|.++|....... ....+..++|++|
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 88 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---------------EGEVLLDGKDIYDLDVDVLELRRRVGMVFQ 88 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---------------CeEEEECCEEhhhcchHHHHHHhhEEEEec
Confidence 689999999999999999999999997 544 899999997543221 1123345789999
Q ss_pred CceEEEecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecC--CCccCCcHHHHHHHHHHcCC
Q psy2946 181 APIVYNYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTC--GWIKGDGFKCLMACAKSLRV 250 (455)
Q Consensus 181 ~p~~~~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~--g~~~s~G~~q~~~ia~al~~ 250 (455)
++ .++ ..|+.+|+.+..... .+.+..+.+.++.... .+.. ...+|+||+||++||+|+..
T Consensus 89 ~~--~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~LSgG~~qrv~la~al~~ 158 (227)
T cd03260 89 KP--NPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDE-------VKDRLHALGLSGGQQQRLCLARALAN 158 (227)
T ss_pred Cc--hhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChH-------HhccCCcccCCHHHHHHHHHHHHHhc
Confidence 88 566 689999987754321 1122333333332211 1112 34567799999999999999
Q ss_pred CEEEEecCchh
Q psy2946 251 DNILVLDQERL 261 (455)
Q Consensus 251 ~~~vll~DEpl 261 (455)
+|+++|+|||+
T Consensus 159 ~p~llllDEPt 169 (227)
T cd03260 159 EPEVLLLDEPT 169 (227)
T ss_pred CCCEEEEeCCC
Confidence 99999999997
No 99
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=4.3e-19 Score=167.36 Aligned_cols=127 Identities=17% Similarity=0.098 Sum_probs=94.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|...... ......+|++|.+ .++
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---------------~G~i~~~g~~i~~~---~~~~~i~~~~q~~--~~~ 94 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLLHVE---------------SGQIQIDGKTATRG---DRSRFMAYLGHLP--GLK 94 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---------------CeeEEECCEEccch---hhhhceEEeecCc--ccc
Confidence 699999999999999999999999997665 89999998754321 2233467888887 778
Q ss_pred cCCCcccCHHHHHHH----HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHC----VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~----~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...|+.+|+.++... ..+....+.+.++... ..|.....+|+|++||++|||++..+|.++|+|||+
T Consensus 95 ~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (214)
T PRK13543 95 ADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAG-------YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY 165 (214)
T ss_pred cCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChh-------hccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 888999998775432 1122233333333211 124444556779999999999999999999999997
No 100
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.74 E-value=3.4e-19 Score=184.22 Aligned_cols=157 Identities=17% Similarity=0.101 Sum_probs=113.4
Q ss_pred CCcchhhhHHHHHHHHH---------HHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEec
Q psy2946 83 ETPMNYYMNVHIILEKQ---------RSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDL 149 (455)
Q Consensus 83 ~t~ml~~~nl~~~~~~~---------r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDl 149 (455)
..|++++.|+++.|... ...+.+++ .+||+++|+|++|||||||+|+|+|+..++
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~------------ 344 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS------------ 344 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC------------
Confidence 45666777777777631 12344443 899999999999999999999999998776
Q ss_pred CCCCCcCCCCCeeeccccc---cccccCCCCcccCceEEEecCCCcccCHHHHHHHHH--------HHHHHHHHhhccCC
Q psy2946 150 DVGQGHVSVPGTIGALVIE---RPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVE--------RLWKSVDERMNKDS 218 (455)
Q Consensus 150 DpgqG~i~~~G~~~~~~~~---~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~--------~l~~~~~~~~~~~~ 218 (455)
+|.|.+.|.. ..... ...+....++||+|...+.+.+|+.+++...+.... ...+.+.++.+..
T Consensus 345 ---~G~i~~~g~~-~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~- 419 (539)
T COG1123 345 ---SGSIIFDGQD-LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLP- 419 (539)
T ss_pred ---CceEEEeCcc-cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCC-
Confidence 8888888875 21111 124456789999998888999999888776554321 1223333333322
Q ss_pred CCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 219 KTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 219 ~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.-+.+-....+|+||+||++|||||+.+|.++++|||+
T Consensus 420 -----~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~ 457 (539)
T COG1123 420 -----PEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPV 457 (539)
T ss_pred -----HHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCc
Confidence 22445566677889999999999999999999999995
No 101
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.74 E-value=2.1e-19 Score=175.32 Aligned_cols=130 Identities=15% Similarity=0.115 Sum_probs=93.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc---ccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER---PATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~---~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+++|+|+..++ +|+|.++|......... .....++|++|++
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~-- 93 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQIAPD---------------HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSG-- 93 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCEEccccChhhHHHHhhcEEEEeccc--
Confidence 689999999999999999999999997666 89999998743321111 1234578899988
Q ss_pred EEecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 185 YNYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.++..+|+.+|+.+..... ...+....+.++... ..+.....+|+||+||++||+|+..+|.++|
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~~~LSgGq~qrv~laral~~~p~lll 166 (269)
T PRK11831 94 ALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-------AAKLMPSELSGGMARRAALARAIALEPDLIM 166 (269)
T ss_pred ccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7788889999987643211 011222233333211 1233444567799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 167 LDEPt 171 (269)
T PRK11831 167 FDEPF 171 (269)
T ss_pred EcCCC
Confidence 99996
No 102
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.74 E-value=8.8e-19 Score=153.51 Aligned_cols=131 Identities=19% Similarity=0.175 Sum_probs=103.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|.||+|||||||+|+++++..++ .|.+++.|........+.++..++|+.|.| .+|
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Lisp~---------------~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~p--aLf 89 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLISPT---------------SGTLLFEGEDVSTLKPEAYRQQVSYCAQTP--ALF 89 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhccCCC---------------CceEEEcCccccccChHHHHHHHHHHHcCc--ccc
Confidence 699999999999999999999999998777 999999999776666667788889999999 899
Q ss_pred cCCCcccCHHHHHHHHH-----HHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 188 GHLTPNANLELYQHCVE-----RLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~-----~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
|+ |++||+.|.-.... ..+..+.++++.... .++.-+-|. |+|++||++|+|.|.-.|+|+++||++.
T Consensus 90 g~-tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~-~L~k~it~l-----SGGE~QriAliR~Lq~~P~ILLLDE~Ts 162 (223)
T COG4619 90 GD-TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDS-ILTKNITEL-----SGGEKQRIALIRNLQFMPKILLLDEITS 162 (223)
T ss_pred cc-chhhccccchHHhccCCChHHHHHHHHHcCCchh-hhcchhhhc-----cchHHHHHHHHHHhhcCCceEEecCchh
Confidence 98 89999988655432 233444455543322 122223333 4499999999999999999999999863
No 103
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.74 E-value=2.2e-19 Score=193.90 Aligned_cols=135 Identities=19% Similarity=0.097 Sum_probs=99.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+|++|||||||+++|+|+. +. +|+|.++|........+.++..++|++|+| ++|
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---------------~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~--~LF 435 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL-PY---------------QGSLKINGIELRELDPESWRKHLSWVGQNP--QLP 435 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC-CC---------------CcEEEECCEecccCCHHHHHhheEEecCCC--cCC
Confidence 699999999999999999999999997 66 999999998776655556677899999999 777
Q ss_pred cCCCcccCHHHHHH-HHHHHHHHHHHhhccCCC----CCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQH-CVERLWKSVDERMNKDSK----TNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~-~~~~l~~~~~~~~~~~~~----~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.. |++||+.++.. ...+......+..+.++. .....-.+.-.|-.+|+||+||++|||||..+|+++|+|||+
T Consensus 436 ~~-TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~T 513 (588)
T PRK11174 436 HG-TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPT 513 (588)
T ss_pred Cc-CHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 65 99999998632 211111222222111110 001111233346667889999999999999999999999997
No 104
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.74 E-value=3.9e-19 Score=163.41 Aligned_cols=107 Identities=16% Similarity=0.111 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc-ccccccCCCCcccCce-EE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI-ERPATIEDGFSQLAPI-VY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~-~~~~~~~~~~~~q~p~-~~ 185 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|....... ....+...+|++|++. ..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLRPPA---------------SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREG 88 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCEECCccCHHHHHhCCeEEecCCcccCc
Confidence 689999999999999999999999997665 899999987543221 1123445788888742 24
Q ss_pred EecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 186 NYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
++...|+.+|+.+... +|+||+||++||+|+..+|.++|+|||+
T Consensus 89 ~~~~~t~~e~l~~~~~--------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 89 LVLDLSVAENIALSSL--------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred ccCCCcHHHHHHHHhh--------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 6777789888766421 3449999999999999999999999996
No 105
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.74 E-value=3.9e-19 Score=191.28 Aligned_cols=161 Identities=21% Similarity=0.188 Sum_probs=113.6
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.|++++ .++.|..++.+.++ |+++.+ ++|++++|+|+||||||||+++|+|+..++
T Consensus 338 ~i~~~~--v~f~y~~~~~~il~--~i~~~i-----------~~G~~~aivG~sGsGKSTL~~ll~g~~~p~--------- 393 (574)
T PRK11160 338 SLTLNN--VSFTYPDQPQPVLK--GLSLQI-----------KAGEKVALLGRTGCGKSTLLQLLTRAWDPQ--------- 393 (574)
T ss_pred eEEEEE--EEEECCCCCCccee--cceEEE-----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------
Confidence 577775 77777543333333 333322 699999999999999999999999996554
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHH-HHHHHHHHHHHhhccCCCCCcccE
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQH-CVERLWKSVDERMNKDSKTNSSGM 225 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~-~~~~l~~~~~~~~~~~~~~~~s~~ 225 (455)
+|+|.++|..........++..++|++|++ ++|.. |+++|+.+... ...+......+..+..+.... +.
T Consensus 394 ------~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~--~lf~~-ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~ 463 (574)
T PRK11160 394 ------QGEILLNGQPIADYSEAALRQAISVVSQRV--HLFSA-TLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DK 463 (574)
T ss_pred ------CceEEECCEEhhhCCHHHHHhheeEEcccc--hhhcc-cHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-cc
Confidence 999999998766555555667789999999 77765 99999988542 122222223333332221111 11
Q ss_pred EEec----CCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 226 IINT----CGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 226 iint----~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
=.|| .|..+|+||+||++||||+..+|+++|+|||+
T Consensus 464 GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~t 503 (574)
T PRK11160 464 GLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPT 503 (574)
T ss_pred ccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1233 46677889999999999999999999999997
No 106
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=5.2e-20 Score=180.80 Aligned_cols=131 Identities=17% Similarity=0.137 Sum_probs=93.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC---CcCCCCCeeeccccccccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ---GHVSVPGTIGALVIERPATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq---G~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+++|+|++.+. + |+|.++|..............++|++|++.
T Consensus 31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~---------------~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~- 94 (282)
T PRK13640 31 PRGSWTALIGHNGSGKSTISKLINGLLLPD---------------DNPNSKITVDGITLTAKTVWDIREKVGIVFQNPD- 94 (282)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcccCCC---------------CCCCcEEEECCEECCcCCHHHHHhheEEEEECHH-
Confidence 689999999999999999999999997665 5 889998875432211123346789999872
Q ss_pred EEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 185 YNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
.++...|+.+|+.+..... .+.+..+.+.++... ..+.....+|+||+||++||+||..+|.++|+
T Consensus 95 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------~~~~~~~~LS~G~~qrv~laral~~~P~llll 167 (282)
T PRK13640 95 NQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLD-------YIDSEPANLSGGQKQRVAIAGILAVEPKIIIL 167 (282)
T ss_pred HhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChh-------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2455679999997643221 112233333333221 23444455677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 168 DEPt 171 (282)
T PRK13640 168 DEST 171 (282)
T ss_pred ECCc
Confidence 9996
No 107
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.74 E-value=1.2e-18 Score=163.94 Aligned_cols=130 Identities=20% Similarity=0.147 Sum_probs=94.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc--cccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|...... ........++|++|++ .
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~--~ 86 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEEPD---------------SGTIIIDGLKLTDDKKNINELRQKVGMVFQQF--N 86 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCEECCccchhHHHHHhcceEEeccc--c
Confidence 589999999999999999999999997665 89999998754211 1112345688999998 7
Q ss_pred EecCCCcccCHHHHHHH--------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHC--------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~--------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
++...|+.+|+.+.... ..+.+..+.+.++... ..+.....+|+||+||++||+|+..+|.++|+
T Consensus 87 ~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrv~la~al~~~p~llll 159 (213)
T cd03262 87 LFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD-------KADAYPAQLSGGQQQRVAIARALAMNPKVMLF 159 (213)
T ss_pred cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHh-------HhhhCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 88888999998775321 1112233333332211 12344455677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 160 DEP~ 163 (213)
T cd03262 160 DEPT 163 (213)
T ss_pred eCCc
Confidence 9997
No 108
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=1.8e-19 Score=168.12 Aligned_cols=129 Identities=16% Similarity=0.012 Sum_probs=93.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..++ +|+|.++|...... .......++|++|.+ .++
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---------------~G~v~~~g~~~~~~-~~~~~~~i~~~~q~~--~~~ 86 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---------------KGEILFERQSIKKD-LCTYQKQLCFVGHRS--GIN 86 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------CeeEEECCCccccC-HHHHHhheEEecccc--ccC
Confidence 689999999999999999999999997665 89999888743321 112334578888887 677
Q ss_pred cCCCcccCHHHHHHH--HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHC--VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~--~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...|+.+|+.+.... ....+..+.+.++... ..+.+...+|+|++||++||||+..+|.++|+|||+
T Consensus 87 ~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~ 155 (200)
T PRK13540 87 PYLTLRENCLYDIHFSPGAVGITELCRLFSLEH-------LIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL 155 (200)
T ss_pred cCCCHHHHHHHHHhcCcchHHHHHHHHHcCCch-------hhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 778999998765321 1112233333332211 224445567779999999999999999999999996
No 109
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.73 E-value=4e-19 Score=168.22 Aligned_cols=136 Identities=18% Similarity=0.141 Sum_probs=91.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|..............++|++|++ .++
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~--~l~ 90 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLVELS---------------SGSILIDGVDISKIGLHDLRSRISIIPQDP--VLF 90 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCCCCC---------------CCEEEECCEEhHhCCHHHHhhhEEEECCCC--ccc
Confidence 689999999999999999999999997666 899999987543222223345678999998 566
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCC----CcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKT----NSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~----~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
. .|+.+|+.++............+.+...... .......+.....+|+||+||++|||++..+|.++|+|||+
T Consensus 91 ~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~ 167 (221)
T cd03244 91 S-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEAT 167 (221)
T ss_pred c-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 5 4899988654221111111111111111000 00111223345566779999999999999999999999996
No 110
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.73 E-value=4.1e-19 Score=171.38 Aligned_cols=130 Identities=18% Similarity=0.113 Sum_probs=93.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc--------ccccccCCCCcc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI--------ERPATIEDGFSQ 179 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~--------~~~~~~~~~~~~ 179 (455)
.+|++++|+|+||||||||+++|+|+..++ +|+|.++|....... ....+...+|++
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~ 91 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQPE---------------AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVF 91 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------CeEEEECCEEccccccccchhhHHHHhhhhEEEEe
Confidence 689999999999999999999999997665 899988887543210 012234578999
Q ss_pred cCceEEEecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCC
Q psy2946 180 LAPIVYNYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVD 251 (455)
Q Consensus 180 q~p~~~~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~ 251 (455)
|++ .++...|+.+|+.+..... ...+..+.+.++... ..|.....+|+||+||++||+|+..+
T Consensus 92 q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~~~LS~Gq~qrv~la~al~~~ 162 (250)
T PRK11264 92 QNF--NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG-------KETSYPRRLSGGQQQRVAIARALAMR 162 (250)
T ss_pred cCc--ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-------hhhCChhhCChHHHHHHHHHHHHhcC
Confidence 988 7787789999987642211 112223333333211 12445556677999999999999999
Q ss_pred EEEEecCchh
Q psy2946 252 NILVLDQERL 261 (455)
Q Consensus 252 ~~vll~DEpl 261 (455)
|.++|+|||+
T Consensus 163 p~lllLDEPt 172 (250)
T PRK11264 163 PEVILFDEPT 172 (250)
T ss_pred CCEEEEeCCC
Confidence 9999999996
No 111
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.73 E-value=5.5e-19 Score=181.51 Aligned_cols=152 Identities=16% Similarity=0.105 Sum_probs=116.5
Q ss_pred CcchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCC
Q psy2946 84 TPMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVP 159 (455)
Q Consensus 84 t~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~ 159 (455)
.++++..|++|.|+. ..+++++ .+|++++++|+||||||||+|+|+|...++ +|+|.++
T Consensus 6 ~~ll~~~~i~K~Fgg--V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---------------~G~I~~~ 68 (500)
T COG1129 6 PPLLELRGISKSFGG--VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---------------SGEILID 68 (500)
T ss_pred cceeeeecceEEcCC--ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---------------CceEEEC
Confidence 456778888888887 5666665 899999999999999999999999998877 9999999
Q ss_pred Ceeec-cccccccccCCCCcccCceEEEecCCCcccCHHHHHHH-----------HHHHHHHHHHhhccCCCCCcccEEE
Q psy2946 160 GTIGA-LVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHC-----------VERLWKSVDERMNKDSKTNSSGMII 227 (455)
Q Consensus 160 G~~~~-~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~-----------~~~l~~~~~~~~~~~~~~~~s~~ii 227 (455)
|.... ..+.+.....+.+++|+. .+++++|+.+|+.+.... ..+.+..+.+++... ...
T Consensus 69 G~~~~~~sp~~A~~~GI~~V~QEl--~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~-------~~~ 139 (500)
T COG1129 69 GKPVAFSSPRDALAAGIATVHQEL--SLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD-------IDP 139 (500)
T ss_pred CEEccCCCHHHHHhCCcEEEeech--hccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC-------CCh
Confidence 98653 233334556788999999 899999999999775432 223334444444322 113
Q ss_pred ecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 228 NTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 228 nt~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+++--.+|.|++|.++||||+..++.|+|+|||+
T Consensus 140 ~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPT 173 (500)
T COG1129 140 DTLVGDLSIAQRQMVEIARALSFDARVLILDEPT 173 (500)
T ss_pred hhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 4444455669999999999999999999999996
No 112
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=8.4e-20 Score=179.77 Aligned_cols=133 Identities=16% Similarity=0.093 Sum_probs=96.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc--cccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE--RPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~--~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|++.+. +|+|.++|........ ...+..++|++|++...
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~ 95 (287)
T PRK13637 31 EDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---------------SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQ 95 (287)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCC---------------ccEEEECCEECCCcCccHHHHhhceEEEecCchhc
Confidence 689999999999999999999999997666 8999999976433211 12345689999987333
Q ss_pred EecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecC
Q psy2946 186 NYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~D 258 (455)
++ ..|+.+|+.+.... ..+.+..+.+.++... .-..|.+...+|+||+||++||+||+.+|.++|+|
T Consensus 96 ~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllD 169 (287)
T PRK13637 96 LF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY-----EDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILD 169 (287)
T ss_pred cc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc-----hhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 44 45999999875432 1122333444433320 01235555667789999999999999999999999
Q ss_pred chh
Q psy2946 259 ERL 261 (455)
Q Consensus 259 Epl 261 (455)
||+
T Consensus 170 EPt 172 (287)
T PRK13637 170 EPT 172 (287)
T ss_pred CCc
Confidence 996
No 113
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.73 E-value=2.3e-19 Score=172.09 Aligned_cols=130 Identities=22% Similarity=0.198 Sum_probs=94.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc--cccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE--RPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~--~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|........ ...+...+|++|++ .
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~--~ 87 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLEEIT---------------SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQF--Y 87 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEECCcCChhHHHHhhceEEEeccc--c
Confidence 589999999999999999999999997665 8999999975432111 12234578999988 6
Q ss_pred EecCCCcccCHHHHHHH--------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHC--------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~--------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
++...|+.+|+.+.... ..+.+..+.+.++... ..+.....+|+||+||++||+|+..+|.++|+
T Consensus 88 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~~~LS~G~~qrv~la~al~~~p~llll 160 (240)
T PRK09493 88 LFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE-------RAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160 (240)
T ss_pred cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH-------HHhcChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 78888999998764321 1112223333332211 12344455677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 161 DEP~ 164 (240)
T PRK09493 161 DEPT 164 (240)
T ss_pred cCCc
Confidence 9997
No 114
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3.1e-19 Score=172.53 Aligned_cols=138 Identities=14% Similarity=0.056 Sum_probs=92.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc--ccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI--ERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~--~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+|+|+|+.... . .+|.+|+|.++|....... ....+..++|++|++ .
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-----~-----~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~--~ 97 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMNDLI-----P-----GARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKP--N 97 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhcccC-----C-----CCCCceEEEECCEEccccccCHHHHhhcEEEEecCC--C
Confidence 689999999999999999999999985310 0 0134899999997543210 112344678999988 5
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
+|. .|+.+|+.+..... .+......+.++..... .-..+.....+|+||+||++||+|+..+|.++|+
T Consensus 98 ~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~LSgGq~qrv~laral~~~p~llll 173 (253)
T PRK14242 98 PFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV---KDRLHESALGLSGGQQQRLCIARALAVEPEVLLM 173 (253)
T ss_pred CCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh---hHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 666 49999997753221 11122222322221100 0022445556677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 174 DEPt 177 (253)
T PRK14242 174 DEPA 177 (253)
T ss_pred eCCc
Confidence 9997
No 115
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.73 E-value=4.3e-19 Score=191.41 Aligned_cols=162 Identities=19% Similarity=0.193 Sum_probs=112.1
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.+++++ ..+.|...+.+.++-.|+.. ++|++++|+|+||||||||+++|+|+..+.
T Consensus 341 ~i~~~~--vsf~y~~~~~~il~~i~l~i-------------~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~--------- 396 (582)
T PRK11176 341 DIEFRN--VTFTYPGKEVPALRNINFKI-------------PAGKTVALVGRSGSGKSTIANLLTRFYDID--------- 396 (582)
T ss_pred eEEEEE--EEEecCCCCCccccCceEEe-------------CCCCEEEEECCCCCCHHHHHHHHHhccCCC---------
Confidence 477775 77777544444444333333 699999999999999999999999996555
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHH--HHHHHHHHHHHhhccCCC----C
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQH--CVERLWKSVDERMNKDSK----T 220 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~--~~~~l~~~~~~~~~~~~~----~ 220 (455)
+|+|.++|........+.++..++|++|++ ++|.. |+++|+.++.. ...+......+..+.++. .
T Consensus 397 ------~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~--~lf~~-Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp 467 (582)
T PRK11176 397 ------EGEILLDGHDLRDYTLASLRNQVALVSQNV--HLFND-TIANNIAYARTEQYSREQIEEAARMAYAMDFINKMD 467 (582)
T ss_pred ------CceEEECCEEhhhcCHHHHHhhceEEccCc--eeecc-hHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcc
Confidence 999999998765554445667789999999 77765 99999987531 111112222222211110 0
Q ss_pred CcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 221 NSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 221 ~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
......+.-.|-.+|+||+||++|||||..+|+++|+|||+
T Consensus 468 ~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEpt 508 (582)
T PRK11176 468 NGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 508 (582)
T ss_pred cccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 00111233345667889999999999999999999999996
No 116
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.73 E-value=1.3e-18 Score=154.32 Aligned_cols=156 Identities=15% Similarity=0.053 Sum_probs=108.2
Q ss_pred cchhhhHHHHHHHHHHHH-------HHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC
Q psy2946 85 PMNYYMNVHIILEKQRSE-------AEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~-------a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq 153 (455)
+.+++.|+++.|...... |.+.+ .+|+..+|+|.||||||||+|+|+|+..|+ +
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT---------------s 67 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---------------S 67 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC---------------C
Confidence 467888999888653222 22222 789999999999999999999999998777 9
Q ss_pred CcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccE
Q psy2946 154 GHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGM 225 (455)
Q Consensus 154 G~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~ 225 (455)
|+|.++|.......-......+-++||+|...|.+.+.+..-++..++.. .+..-...+.+ .+.+.
T Consensus 68 G~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~V------GL~Pd 141 (267)
T COG4167 68 GEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMV------GLLPD 141 (267)
T ss_pred ceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHh------ccCcc
Confidence 99999998654332223345577899999766766655554444444332 11111122223 23333
Q ss_pred EEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 226 IINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 226 iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
--|......+.||+||+++||||..+|.++|.||.+
T Consensus 142 han~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl 177 (267)
T COG4167 142 HANYYPHMLAPGQKQRVALARALILRPKIIIADEAL 177 (267)
T ss_pred ccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhh
Confidence 445555566779999999999999999999999975
No 117
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=5e-19 Score=166.41 Aligned_cols=128 Identities=18% Similarity=0.136 Sum_probs=93.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+| +++|+|+||||||||+++|+|+..+. +|+|.++|....... ......++|++|++ .+|
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~--~~~ 84 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATLTPPS---------------SGTIRIDGQDVLKQP-QKLRRRIGYLPQEF--GVY 84 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHHHHhCCCCCC---------------ccEEEECCCccccch-HHHHhheEEecCCC--ccc
Confidence 468 99999999999999999999997666 899998887533221 22345578999998 778
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
..+|+.+|+.+..... .+.++.+.+.++... ..++....+|+||+||++||+|+..+|+++|+|||
T Consensus 85 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 157 (211)
T cd03264 85 PNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGD-------RAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157 (211)
T ss_pred ccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHH-------HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 8889999988754321 112233333333211 12444555677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 158 t 158 (211)
T cd03264 158 T 158 (211)
T ss_pred c
Confidence 7
No 118
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.73 E-value=4.8e-19 Score=166.75 Aligned_cols=130 Identities=15% Similarity=0.094 Sum_probs=95.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc---cccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE---RPATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~---~~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+++|+|+..++ +|+|.++|........ ...+...+|++|++
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~-- 87 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEELPT---------------SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDF-- 87 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------ceEEEECCEEcccCCHHHHHHHHHheEEEecCc--
Confidence 589999999999999999999999987655 8999998875432211 11334578999998
Q ss_pred EEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 185 YNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
.+|+..|+.+|+.+..... .+.++.+.+.++... ..+.....+|+||+||++||+|+..+|.++|+
T Consensus 88 ~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrv~laral~~~p~llll 160 (214)
T cd03292 88 RLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSH-------KHRALPAELSGGEQQRVAIARAIVNSPTILIA 160 (214)
T ss_pred hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-------HhhCChhhcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 7888889999998764321 112223333332211 22344455677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 161 DEPt 164 (214)
T cd03292 161 DEPT 164 (214)
T ss_pred eCCC
Confidence 9997
No 119
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=6.5e-20 Score=180.66 Aligned_cols=132 Identities=18% Similarity=0.145 Sum_probs=95.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc----cccccccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV----IERPATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~----~~~~~~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|...... .....+..++|++|+|.
T Consensus 30 ~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~ 94 (288)
T PRK13643 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPT---------------EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPE 94 (288)
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCCCCC---------------CcEEEECCEECccccccccHHHHHhhEEEEecCcc
Confidence 689999999999999999999999997666 89999999864311 01123456789999874
Q ss_pred EEEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 184 VYNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
..+|. .|+.+|+.+..... ...+....+.++.. ....+.+...+|+||+||++||++|..+|+++|
T Consensus 95 ~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~ill 167 (288)
T PRK13643 95 SQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA------DEFWEKSPFELSGGQMRRVAIAGILAMEPEVLV 167 (288)
T ss_pred hhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCC------hhhccCCcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 45565 49999998764321 12223333333321 112344556677799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 168 LDEPt 172 (288)
T PRK13643 168 LDEPT 172 (288)
T ss_pred EECCc
Confidence 99996
No 120
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.73 E-value=2.7e-19 Score=167.06 Aligned_cols=129 Identities=19% Similarity=0.131 Sum_probs=95.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|...... ....+...+|++|.+ .++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~--~~~ 85 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLSPPL---------------AGRVLLNGGPLDFQ-RDSIARGLLYLGHAP--GIK 85 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CcEEEECCEecccc-cHHhhhheEEecccc--ccC
Confidence 689999999999999999999999997665 89998888754321 122344578888887 677
Q ss_pred cCCCcccCHHHHHHH-HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHC-VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...|+.+|+.++... ..+..+...+.++... ..+.+...+|+||+||+++|||+..+|.++|+|||+
T Consensus 86 ~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 153 (201)
T cd03231 86 TTLSVLENLRFWHADHSDEQVEEALARVGLNG-------FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT 153 (201)
T ss_pred CCcCHHHHHHhhcccccHHHHHHHHHHcCChh-------hhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 788999998876422 1222333334433221 124445566779999999999999999999999996
No 121
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=7.6e-20 Score=182.46 Aligned_cols=132 Identities=17% Similarity=0.101 Sum_probs=94.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc----------------ccccc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV----------------IERPA 171 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~----------------~~~~~ 171 (455)
.+|++++|+|+||||||||+++|+|++.+. +|+|.++|...... ....+
T Consensus 50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---------------~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---------------YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKEL 114 (320)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CCeEEECCEEcccccccccccccccccccchHHHH
Confidence 689999999999999999999999997666 89999888654221 01123
Q ss_pred ccCCCCcccCceEEEecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHH
Q psy2946 172 TIEDGFSQLAPIVYNYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMAC 244 (455)
Q Consensus 172 ~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~i 244 (455)
+..++|++|++..++|.. |+.+|+.+.... ....+..+.+.++... -..+..+..+|+||+||++|
T Consensus 115 ~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~~~~LSgGqkqRvai 187 (320)
T PRK13631 115 RRRVSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD------SYLERSPFGLSGGQKRRVAI 187 (320)
T ss_pred HhcEEEEEECchhccccc-hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh------hHhcCCcccCCHHHHHHHHH
Confidence 456789999874345654 999998765321 1122333334433211 12344555677799999999
Q ss_pred HHHcCCCEEEEecCchh
Q psy2946 245 AKSLRVDNILVLDQERL 261 (455)
Q Consensus 245 a~al~~~~~vll~DEpl 261 (455)
||||..+|.++|+|||+
T Consensus 188 AraL~~~p~iLLLDEPt 204 (320)
T PRK13631 188 AGILAIQPEILIFDEPT 204 (320)
T ss_pred HHHHHcCCCEEEEECCc
Confidence 99999999999999996
No 122
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.73 E-value=4.6e-19 Score=190.76 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=113.3
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.+++++ .++.|...+.+.++-.|++. ++|++++|+|+||||||||+++|+|+..+.
T Consensus 330 ~i~~~~--v~f~y~~~~~~il~~inl~i-------------~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~--------- 385 (571)
T TIGR02203 330 DVEFRN--VTFRYPGRDRPALDSISLVI-------------EPGETVALVGRSGSGKSTLVNLIPRFYEPD--------- 385 (571)
T ss_pred eEEEEE--EEEEcCCCCCccccCeeEEe-------------cCCCEEEEECCCCCCHHHHHHHHHhccCCC---------
Confidence 477775 77777554444444333333 589999999999999999999999996655
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHH--HHHHHHHHHHHhhccCCC-----
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQH--CVERLWKSVDERMNKDSK----- 219 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~--~~~~l~~~~~~~~~~~~~----- 219 (455)
+|+|.++|........+.++...+|++|+| ++|.. |+++|+.++.. ...+......+.++..+.
T Consensus 386 ------~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~--~lf~~-Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp 456 (571)
T TIGR02203 386 ------SGQILLDGHDLADYTLASLRRQVALVSQDV--VLFND-TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLP 456 (571)
T ss_pred ------CCeEEECCEeHHhcCHHHHHhhceEEccCc--ccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCc
Confidence 999999998765554555667789999999 77765 99999987631 212212222222221110
Q ss_pred CCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 220 TNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 220 ~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
..... .+.-.|-.+|+||+||++||||+..+++++++|||+.
T Consensus 457 ~gldt-~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts 498 (571)
T TIGR02203 457 LGLDT-PIGENGVLLSGGQRQRLAIARALLKDAPILILDEATS 498 (571)
T ss_pred Ccccc-eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 01111 2222355678899999999999999999999999973
No 123
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.6e-19 Score=175.85 Aligned_cols=130 Identities=18% Similarity=0.136 Sum_probs=94.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|..............++|++|++ .++
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~--~~~ 93 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---------------HGHVWLDGEHIQHYASKEVARRIGLLAQNA--TTP 93 (265)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCC---------------CcEEEECCEEhhhCCHHHHhhheEEeeccC--cCC
Confidence 589999999999999999999999987655 899999987543221222234578999998 777
Q ss_pred cCCCcccCHHHHH-----------HHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 188 GHLTPNANLELYQ-----------HCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 188 g~~sv~~n~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
+..++.+|+.+.. ......+..+.+.++... ..|.....+|+||+||++||||+..+|.++|
T Consensus 94 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~Gq~qrv~laral~~~p~lll 166 (265)
T PRK10253 94 GDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH-------LADQSVDTLSGGQRQRAWIAMVLAQETAIML 166 (265)
T ss_pred CCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-------HhcCCcccCChHHHHHHHHHHHHhcCCCEEE
Confidence 7789999887531 011112233333333211 2345556677799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 167 lDEPt 171 (265)
T PRK10253 167 LDEPT 171 (265)
T ss_pred EeCcc
Confidence 99996
No 124
>KOG0057|consensus
Probab=99.73 E-value=1.1e-19 Score=184.79 Aligned_cols=135 Identities=18% Similarity=0.176 Sum_probs=98.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|+.|+|+|+|||||||++|+|..+.. + +|+|.++|........+.++..+|++||+. .+|
T Consensus 376 ~kGekVaIvG~nGsGKSTilr~LlrF~d-~---------------sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~--~LF 437 (591)
T KOG0057|consen 376 PKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---------------SGSILIDGQDIKEVSLESLRQSIGVVPQDS--VLF 437 (591)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhc-c---------------CCcEEECCeeHhhhChHHhhhheeEeCCcc--ccc
Confidence 7999999999999999999999999975 4 899999999988877778888999999998 677
Q ss_pred cCCCcccCHHHHHHHH-HHHHHHHHHhhccCCC----CCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCV-ERLWKSVDERMNKDSK----TNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-~~l~~~~~~~~~~~~~----~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.+ |+..|+.+..... .+...+..++.+..+. .+...-.+.-.|..+|+||+||++++||+..|++|+++||++
T Consensus 438 nd-TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaT 515 (591)
T KOG0057|consen 438 ND-TILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEAT 515 (591)
T ss_pred ch-hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcc
Confidence 66 8988887743211 0001111111111100 000011122345667889999999999999999999999986
No 125
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4.5e-19 Score=170.73 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=94.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. .|.+|+|.++|...........+..++|++|++ .+|
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------------~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~--~l~ 91 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRMNDKI------------AKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQP--NVF 91 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCC------------CCCceEEEECCEecccCCHHHHhhhEEEEecCC--ccc
Confidence 689999999999999999999999986421 134899999998653322223345678999998 566
Q ss_pred cCCCcccCHHHHHHH---------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecC
Q psy2946 188 GHLTPNANLELYQHC---------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258 (455)
Q Consensus 188 g~~sv~~n~~~~~~~---------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~D 258 (455)
. .|+.+|+.+.... ....+..+.+.++..... ....+..+..+|+||+||++||||+..+|+++|+|
T Consensus 92 ~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 167 (246)
T PRK14269 92 V-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV---KDKLKQNALALSGGQQQRLCIARALAIKPKLLLLD 167 (246)
T ss_pred c-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh---hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 5 5999998765321 111222333333331100 01134445556779999999999999999999999
Q ss_pred chh
Q psy2946 259 ERL 261 (455)
Q Consensus 259 Epl 261 (455)
||+
T Consensus 168 EP~ 170 (246)
T PRK14269 168 EPT 170 (246)
T ss_pred CCc
Confidence 997
No 126
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.73 E-value=2.7e-19 Score=170.45 Aligned_cols=131 Identities=19% Similarity=0.179 Sum_probs=94.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc-ccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER-PATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~-~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|......... ......+|++|++ .+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~--~~ 86 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---------------SGSIRLDGEDITKLPPHERARAGIAYVPQGR--EI 86 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CCEEEECCEECCCCCHHHHHHhCeEEeccCC--cc
Confidence 589999999999999999999999997666 89999998754322111 1234578999998 77
Q ss_pred ecCCCcccCHHHHHHHH----HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 187 YGHLTPNANLELYQHCV----ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~~----~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
|...|+.+|+.+..... ......+.+.++. .....+.....+|+||+||++||+|+..+|+++|+|||+
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~------l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 87 FPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV------LKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred cCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh------HHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 88889999987654321 1122333333221 011224444556779999999999999999999999996
No 127
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.73 E-value=3.4e-19 Score=172.88 Aligned_cols=130 Identities=16% Similarity=0.039 Sum_probs=93.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|...............+|++|++ .++
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---------------~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~--~~~ 88 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGELSPD---------------SGEVRLNGRPLADWSPAELARRRAVLPQHS--SLS 88 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CCEEEECCEEcccCCHHHhhhheEEEccCC--cCC
Confidence 589999999999999999999999997666 899999887543221122234578899987 666
Q ss_pred cCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcC------CCEEE
Q psy2946 188 GHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLR------VDNIL 254 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~------~~~~v 254 (455)
...|+.+|+.+.... ....+..+.+.++... ..+.....+|+||+||++||+||. .+|.+
T Consensus 89 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~l 161 (258)
T PRK13548 89 FPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH-------LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW 161 (258)
T ss_pred CCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh-------HhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 677999998774321 1122233333333221 224445566779999999999999 59999
Q ss_pred EecCchh
Q psy2946 255 VLDQERL 261 (455)
Q Consensus 255 ll~DEpl 261 (455)
+|+|||+
T Consensus 162 llLDEPt 168 (258)
T PRK13548 162 LLLDEPT 168 (258)
T ss_pred EEEeCCc
Confidence 9999997
No 128
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1e-18 Score=165.36 Aligned_cols=125 Identities=23% Similarity=0.216 Sum_probs=93.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|..... ....++|++|.+ .++
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~~~~-----~~~~i~~v~q~~--~~~ 85 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLERPT---------------SGEVLVDGEPVTG-----PGPDRGYVFQQD--ALL 85 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEECcc-----ccCcEEEEeccc--ccc
Confidence 589999999999999999999999997665 8999998875321 234578899988 678
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...|+.+|+.+..... ...+..+.+.++... ..+.....+|+||+||++||+|+..+|.++|+|||
T Consensus 86 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEP 158 (220)
T cd03293 86 PWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSG-------FENAYPHQLSGGMRQRVALARALAVDPDVLLLDEP 158 (220)
T ss_pred cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 8889999988754321 122333344433321 12333445677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 159 t 159 (220)
T cd03293 159 F 159 (220)
T ss_pred C
Confidence 7
No 129
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.3e-19 Score=177.67 Aligned_cols=131 Identities=16% Similarity=0.097 Sum_probs=93.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|...............+|++|++...++
T Consensus 28 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (277)
T PRK13652 28 PRNSRIAVIGPNGAGKSTLFRHFNGILKPT---------------SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIF 92 (277)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------ceEEEECCEECCcCCHHHHHhheEEEecCcccccc
Confidence 689999999999999999999999997666 89999999854322112234457899998732344
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
..|+.+|+.+..... .+.++.+.+.++... ..+.....+|+||+||++||+||..+|.++|+|||
T Consensus 93 -~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEP 164 (277)
T PRK13652 93 -SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEE-------LRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEP 164 (277)
T ss_pred -cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 469999987643211 112233333333211 23444456677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 165 t 165 (277)
T PRK13652 165 T 165 (277)
T ss_pred c
Confidence 6
No 130
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.73 E-value=1.8e-19 Score=175.67 Aligned_cols=133 Identities=14% Similarity=0.066 Sum_probs=92.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|++.+. +|+|.++|..............++|++|++..+++
T Consensus 37 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (267)
T PRK15112 37 REGQTLAIIGENGSGKSTLAKMLAGMIEPT---------------SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLN 101 (267)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---------------CCEEEECCEECCCCchhhHhccEEEEecCchhhcC
Confidence 689999999999999999999999997666 89999998754321111223357888888733356
Q ss_pred cCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCc
Q psy2946 188 GHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE 259 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DE 259 (455)
+..++.+++.+..... ...+..+.+.++... ...+.....+|+||+||++||+|+..+|.++|+||
T Consensus 102 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 175 (267)
T PRK15112 102 PRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP------DHASYYPHMLAPGQKQRLGLARALILRPKVIIADE 175 (267)
T ss_pred cchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh------HHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 6778877776533211 112233344443311 11233344567799999999999999999999999
Q ss_pred hh
Q psy2946 260 RL 261 (455)
Q Consensus 260 pl 261 (455)
|+
T Consensus 176 Pt 177 (267)
T PRK15112 176 AL 177 (267)
T ss_pred Cc
Confidence 97
No 131
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.73 E-value=3.8e-19 Score=195.95 Aligned_cols=162 Identities=18% Similarity=0.162 Sum_probs=112.7
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.|++++ ..+.|.. +.+.++ |++..+ ++|++++|+|+||||||||+++|+|+..++
T Consensus 473 ~I~~~~--vsf~y~~-~~~iL~--~isl~i-----------~~G~~vaIvG~SGsGKSTLlklL~gl~~p~--------- 527 (708)
T TIGR01193 473 DIVIND--VSYSYGY-GSNILS--DISLTI-----------KMNSKTTIVGMSGSGKSTLAKLLVGFFQAR--------- 527 (708)
T ss_pred cEEEEE--EEEEcCC-CCccee--ceeEEE-----------CCCCEEEEECCCCCCHHHHHHHHhccCCCC---------
Confidence 477775 7777742 233333 333221 699999999999999999999999996555
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHH--HHHHHHHHHHHHhhccCCC----C
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQ--HCVERLWKSVDERMNKDSK----T 220 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~--~~~~~l~~~~~~~~~~~~~----~ 220 (455)
+|+|.++|........+.++..++|++|++ ++|.. |++||+.+.. ....+......+..+.++. .
T Consensus 528 ------~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~--~lf~g-TI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp 598 (708)
T TIGR01193 528 ------SGEILLNGFSLKDIDRHTLRQFINYLPQEP--YIFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMP 598 (708)
T ss_pred ------CcEEEECCEEHHHcCHHHHHHheEEEecCc--eehhH-HHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcc
Confidence 999999999776665556677899999999 77765 9999999862 1111111112222111110 0
Q ss_pred CcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 221 NSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 221 ~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
......+.-.|-.+|+||+||++||||+..+|+++|+|||+.
T Consensus 599 ~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts 640 (708)
T TIGR01193 599 LGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTS 640 (708)
T ss_pred cccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccc
Confidence 111123344566678899999999999999999999999973
No 132
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.6e-19 Score=180.59 Aligned_cols=133 Identities=17% Similarity=0.078 Sum_probs=98.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc---cccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE---RPATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~---~~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+++|+|++.+. +|+|.++|........ ..++..++|++|++..
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---------------~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~ 103 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIETPT---------------GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYG 103 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCCCCC---------------CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchh
Confidence 799999999999999999999999997655 8999999976543211 1234568999999865
Q ss_pred EEecCCCcccCHHHHHHH--------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 185 YNYGHLTPNANLELYQHC--------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~--------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.+++.+++.+++...... ....+..+.+.++... ...+.....+|+||+||++||+||+.+|.++|
T Consensus 104 ~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLi 177 (327)
T PRK11308 104 SLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDRYPHMFSGGQRQRIAIARALMLDPDVVV 177 (327)
T ss_pred hcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcCCCccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 678888888877543221 1122334444443321 12355666778899999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 178 lDEPt 182 (327)
T PRK11308 178 ADEPV 182 (327)
T ss_pred EECCC
Confidence 99996
No 133
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=2.5e-18 Score=164.90 Aligned_cols=130 Identities=20% Similarity=0.092 Sum_probs=94.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc---ccccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI---ERPATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~---~~~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|....... .......++|++|++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~-- 87 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLVEPT---------------SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQF-- 87 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCC---------------CceEEECCEeccccCHhHHHHHHhccEEEcccC--
Confidence 589999999999999999999999997665 899999987543221 112334578999988
Q ss_pred EEecCCCcccCHHHHHHH---------------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcC
Q psy2946 185 YNYGHLTPNANLELYQHC---------------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLR 249 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~---------------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~ 249 (455)
.+|...|+.+|+.+.... ....+..+.+.++.. ...+.....+|+||+||++||+|+.
T Consensus 88 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LS~G~~qrv~la~al~ 160 (241)
T cd03256 88 NLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-------DKAYQRADQLSGGQQQRVAIARALM 160 (241)
T ss_pred cccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-------hhhCCCcccCCHHHHHHHHHHHHHh
Confidence 678888999998753210 011122223333221 1234455667789999999999999
Q ss_pred CCEEEEecCchh
Q psy2946 250 VDNILVLDQERL 261 (455)
Q Consensus 250 ~~~~vll~DEpl 261 (455)
.+|.++|+|||+
T Consensus 161 ~~p~llllDEPt 172 (241)
T cd03256 161 QQPKLILADEPV 172 (241)
T ss_pred cCCCEEEEeCcc
Confidence 999999999997
No 134
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.73 E-value=4.3e-19 Score=195.12 Aligned_cols=162 Identities=22% Similarity=0.217 Sum_probs=113.4
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.|++++ ..+.|..++.+.++-.|++. ++|++++|+|+||||||||+++|+|+..+.
T Consensus 463 ~I~~~~--vsf~Y~~~~~~vL~~i~l~i-------------~~G~~iaIvG~sGsGKSTLlklL~gl~~p~--------- 518 (694)
T TIGR03375 463 EIEFRN--VSFAYPGQETPALDNVSLTI-------------RPGEKVAIIGRIGSGKSTLLKLLLGLYQPT--------- 518 (694)
T ss_pred eEEEEE--EEEEeCCCCccceeeeeEEE-------------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------
Confidence 477775 77788544444433222222 699999999999999999999999996555
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHH-HHHHHHHHHHHhhccCCC----CC
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQH-CVERLWKSVDERMNKDSK----TN 221 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~-~~~~l~~~~~~~~~~~~~----~~ 221 (455)
+|+|.++|..........++..+++++|++ ++|.. |++||+.+... ...+......+..+..+. ..
T Consensus 519 ------~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~--~lf~~-TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~ 589 (694)
T TIGR03375 519 ------EGSVLLDGVDIRQIDPADLRRNIGYVPQDP--RLFYG-TLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPD 589 (694)
T ss_pred ------CceEEECCEEhhhCCHHHHHhccEEECCCh--hhhhh-hHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcc
Confidence 999999998766655556677899999999 77765 99999987632 111111111222111110 01
Q ss_pred cccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 222 SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 222 ~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...-.+.-.|-.+|+||+||++|||||..+|+++|+|||+
T Consensus 590 gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~T 629 (694)
T TIGR03375 590 GLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPT 629 (694)
T ss_pred cccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1112334456677889999999999999999999999997
No 135
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.72 E-value=7.6e-19 Score=187.38 Aligned_cols=162 Identities=22% Similarity=0.241 Sum_probs=111.2
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.|++++ ..+.|...+.+.++ |++..+ ++|++++|+|+||||||||+|+|+|+..+.
T Consensus 320 ~i~~~~--v~f~y~~~~~~il~--~i~l~i-----------~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--------- 375 (529)
T TIGR02857 320 SLEFSG--LSVAYPGRRAPALR--PVSFTV-----------PPGERVALVGPSGAGKSTLLNLLLGFVDPT--------- 375 (529)
T ss_pred eEEEEE--EEEECCCCCccccc--ceeEEE-----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------
Confidence 577775 77777543333332 333221 699999999999999999999999996555
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHH-HHHHHHHHHHhhccCCCCCc---
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHC-VERLWKSVDERMNKDSKTNS--- 222 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~-~~~l~~~~~~~~~~~~~~~~--- 222 (455)
+|+|.++|........+.++...+|++|++ ++|.. |++||+.+.... ..+......+..+..+....
T Consensus 376 ------~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~--~lf~~-ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~ 446 (529)
T TIGR02857 376 ------EGSIAVNGVPLADADADSWRDQIAWVPQHP--FLFAG-TIAENIRLARPDASDAEIRRALERAGLDEFVAALPQ 446 (529)
T ss_pred ------CcEEEECCEehhhCCHHHHHhheEEEcCCC--cccCc-CHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcc
Confidence 999999998765554455667789999999 77764 999999875321 11112222222222111000
Q ss_pred -ccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 223 -SGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 223 -s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
..-.+.-.|-.+|+||+||++||||+..+|+++++|||+
T Consensus 447 Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~t 486 (529)
T TIGR02857 447 GLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPT 486 (529)
T ss_pred cccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 011222345667889999999999999999999999996
No 136
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.3e-18 Score=162.55 Aligned_cols=116 Identities=17% Similarity=0.107 Sum_probs=88.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|.+|+|.++|...... .......++|++|++ .++
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~------------~~~~G~i~i~g~~~~~~-~~~~~~~i~~~~q~~--~~~ 95 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTEGN------------VSVEGDIHYNGIPYKEF-AEKYPGEIIYVSEED--VHF 95 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCCCC------------CCcceEEEECCEECccc-hhhhcceEEEEeccc--ccC
Confidence 689999999999999999999999997621 13389999999754332 123344578899887 778
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...|+.+|+.+..... .+.....+|+||+||++||+|+..+|.++|+|||+
T Consensus 96 ~~~tv~~~l~~~~~~~-----------------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt 146 (202)
T cd03233 96 PTLTVRETLDFALRCK-----------------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNST 146 (202)
T ss_pred CCCcHHHHHhhhhhhc-----------------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 8889999987643210 11122234559999999999999999999999996
No 137
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.72 E-value=3.8e-19 Score=166.87 Aligned_cols=127 Identities=17% Similarity=0.099 Sum_probs=92.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|..... .. .+...+|++|.+ .++
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~--~~-~~~~~~~~~~~~--~~~ 85 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLLPPA---------------AGTIKLDGGDIDD--PD-VAEACHYLGHRN--AMK 85 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCEeCcc--hh-hHhhcEEecCCC--cCC
Confidence 689999999999999999999999986655 8999988865321 11 344567887766 567
Q ss_pred cCCCcccCHHHHHHHH---HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCV---ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~---~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...|+.+|+.+..... ...+..+.+.++.. . ..+.+...+|+||+||++||+|+..+|.++|+|||+
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~------~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 155 (207)
T PRK13539 86 PALTVAENLEFWAAFLGGEELDIAAALEAVGLA------P-LAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPT 155 (207)
T ss_pred CCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH------H-HHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 7789999987654321 11233333333321 1 224445567779999999999999999999999997
No 138
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.72 E-value=1.4e-18 Score=191.35 Aligned_cols=163 Identities=17% Similarity=0.185 Sum_probs=112.7
Q ss_pred EEEEEeeccceeeeec-CCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccE
Q psy2946 67 SITMKNARKNMTYVSK-ETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPI 145 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~-~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~ 145 (455)
.|++++ ..+.|... +.+.+ .|+++.+ ++|++++|+|+||||||||+++|+|+..+.
T Consensus 478 ~I~~~n--Vsf~Y~~~~~~~vL--~~isl~i-----------~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~-------- 534 (711)
T TIGR00958 478 LIEFQD--VSFSYPNRPDVPVL--KGLTFTL-----------HPGEVVALVGPSGSGKSTVAALLQNLYQPT-------- 534 (711)
T ss_pred eEEEEE--EEEECCCCCCCccc--cCceEEE-----------cCCCEEEEECCCCCCHHHHHHHHHhccCCC--------
Confidence 477775 77777543 23333 2333322 699999999999999999999999996555
Q ss_pred EEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHH-HHHHHHHHHHhhccCCC----C
Q psy2946 146 FVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHC-VERLWKSVDERMNKDSK----T 220 (455)
Q Consensus 146 ~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~-~~~l~~~~~~~~~~~~~----~ 220 (455)
+|+|.++|........+.++..++|++|+| ++|.. |++||+.+.... ..+......+..+..+. .
T Consensus 535 -------~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~--~lF~g-TIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp 604 (711)
T TIGR00958 535 -------GGQVLLDGVPLVQYDHHYLHRQVALVGQEP--VLFSG-SVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFP 604 (711)
T ss_pred -------CCEEEECCEEHHhcCHHHHHhhceEEecCc--ccccc-CHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCC
Confidence 999999999776655556677789999999 77765 999999876321 11112222222221111 0
Q ss_pred CcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 221 NSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 221 ~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
+.....+.-.|-.+|+||+||++||||+..+|+|+|+|||+.
T Consensus 605 ~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTS 646 (711)
T TIGR00958 605 NGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATS 646 (711)
T ss_pred CccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEcccc
Confidence 011112233456678899999999999999999999999973
No 139
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.72 E-value=3.3e-18 Score=165.65 Aligned_cols=140 Identities=16% Similarity=0.130 Sum_probs=103.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc----cccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP----ATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~----~~~~~~~~~q~p~ 183 (455)
.+||+++|+|++||||||+++.|++++... ..+.. .|+|.+.|........+. ....++++||+|.
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp~~---~~~i~-------~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~ 98 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLPKP---NARIV-------GGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM 98 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccCCC---CCeEe-------eeEEEECCcccccCCHHHHHhhcCceEEEEEcCch
Confidence 589999999999999999999999998632 12222 789999999766554432 2345799999998
Q ss_pred EEEecCCCcccCHHHHHHHHH---------HHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEE
Q psy2946 184 VYNYGHLTPNANLELYQHCVE---------RLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNIL 254 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~~~---------~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~v 254 (455)
..+.+.+++.+.+.-...... +.+.++.+.++.... ..+.+.....+|+||+||+.||.|++.+|++
T Consensus 99 ~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~----~~~~~~YPhelSGGMrQRV~IAmala~~P~L 174 (316)
T COG0444 99 TSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP----ERRLKSYPHELSGGMRQRVMIAMALALNPKL 174 (316)
T ss_pred hhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH----HHHHhhCCcccCCcHHHHHHHHHHHhCCCCE
Confidence 888888888776655444321 123333344333221 1245667788889999999999999999999
Q ss_pred EecCchh
Q psy2946 255 VLDQERL 261 (455)
Q Consensus 255 ll~DEpl 261 (455)
+|.|||+
T Consensus 175 lIADEPT 181 (316)
T COG0444 175 LIADEPT 181 (316)
T ss_pred EEeCCCc
Confidence 9999995
No 140
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=6e-19 Score=171.10 Aligned_cols=139 Identities=15% Similarity=0.103 Sum_probs=94.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc--ccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI--ERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~--~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+..+. . -.|.+|+|.++|....... ....+...+|++|.+ .
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~-------~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~--~ 103 (258)
T PRK14268 36 PKNSVTALIGPSGCGKSTFIRCLNRMNDLI---K-------NCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKP--N 103 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc---c-------CCCcceEEEECCEEcccccchHHHHhhhEEEEecCC--c
Confidence 699999999999999999999999986531 0 0023899999987543211 112344578999988 6
Q ss_pred EecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecC
Q psy2946 186 NYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~D 258 (455)
++. .|+.+|+.+..... ...+..+.+.++.... ..-..+.+...+|+||+||++|||||..+|.++|+|
T Consensus 104 ~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 179 (258)
T PRK14268 104 PFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDE---TSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFD 179 (258)
T ss_pred cCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcc---hhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 666 79999998753221 1112223333322100 011235566677889999999999999999999999
Q ss_pred chhh
Q psy2946 259 ERLY 262 (455)
Q Consensus 259 Epl~ 262 (455)
||+.
T Consensus 180 EPt~ 183 (258)
T PRK14268 180 EPTS 183 (258)
T ss_pred CCCc
Confidence 9973
No 141
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.1e-19 Score=177.74 Aligned_cols=131 Identities=18% Similarity=0.094 Sum_probs=93.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc-cccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE-RPATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~-~~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|........ ......++|++|++...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~- 89 (274)
T PRK13644 26 KKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---------------KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQ- 89 (274)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------CceEEECCEECCccccHHHHHhheEEEEEChhhh-
Confidence 689999999999999999999999997666 8999999975432211 12334578999987322
Q ss_pred ecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCc
Q psy2946 187 YGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE 259 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DE 259 (455)
+...|+.+|+.+..... .+.++.+.+.++.. -..+.+...+|+||+||++||+|+..+|.++|+||
T Consensus 90 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~-------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 162 (274)
T PRK13644 90 FVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE-------KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDE 162 (274)
T ss_pred cccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-------HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 33469999987654321 12223333333321 12344555667799999999999999999999999
Q ss_pred hh
Q psy2946 260 RL 261 (455)
Q Consensus 260 pl 261 (455)
|+
T Consensus 163 Pt 164 (274)
T PRK13644 163 VT 164 (274)
T ss_pred Cc
Confidence 97
No 142
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.72 E-value=6.5e-19 Score=190.40 Aligned_cols=162 Identities=19% Similarity=0.162 Sum_probs=112.7
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.+++++ ..+.|..+ .+.++ |++..+ ++|++++|+|+||||||||+++|+|+..+.
T Consensus 340 ~i~~~~--v~f~y~~~-~~il~--~i~l~i-----------~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~--------- 394 (592)
T PRK10790 340 RIDIDN--VSFAYRDD-NLVLQ--NINLSV-----------PSRGFVALVGHTGSGKSTLASLLMGYYPLT--------- 394 (592)
T ss_pred eEEEEE--EEEEeCCC-Cceee--ceeEEE-----------cCCCEEEEECCCCCCHHHHHHHHhcccCCC---------
Confidence 477774 66777532 23332 333221 699999999999999999999999996655
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCC----Cc
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKT----NS 222 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~----~~ 222 (455)
+|+|.++|........+.++..++|++|++ ++|.. |+++|+.++.....+......+..+..+.. ..
T Consensus 395 ------~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~--~lF~~-Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~G 465 (592)
T PRK10790 395 ------EGEIRLDGRPLSSLSHSVLRQGVAMVQQDP--VVLAD-TFLANVTLGRDISEEQVWQALETVQLAELARSLPDG 465 (592)
T ss_pred ------CceEEECCEEhhhCCHHHHHhheEEEccCC--ccccc-hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcccc
Confidence 999999998766555556677889999999 78876 999999987522122222222222221110 00
Q ss_pred ccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 223 SGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 223 s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
..-.+...|-..|+||+||++|||||..+++++|+|||+.
T Consensus 466 ldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts 505 (592)
T PRK10790 466 LYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATA 505 (592)
T ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 1112233466678899999999999999999999999973
No 143
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.5e-19 Score=171.98 Aligned_cols=130 Identities=18% Similarity=0.081 Sum_probs=92.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|...........+...+|++|++ .++
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~--~~~ 89 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLIDPT---------------EGSILIDGVDIKTIDVIDLRRKIGMVFQQP--HLF 89 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CcEEEECCEEhhhcChHHhhhcEEEEecCc--hhc
Confidence 589999999999999999999999987655 899999997543221122344578899988 666
Q ss_pred cCCCcccCHHHHHHHH---HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCV---ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~---~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
. .|+.+|+.+..... ...+..+.+.++... ...+.....+|+||+||++||+|+..+|.++|+|||+
T Consensus 90 ~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 159 (241)
T PRK14250 90 E-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK------EYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPT 159 (241)
T ss_pred h-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH------HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 5 58999887532211 112233333433210 1123344556779999999999999999999999997
No 144
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.3e-19 Score=177.49 Aligned_cols=131 Identities=15% Similarity=0.073 Sum_probs=94.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|...........+..++|++|++. .++
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~-~~~ 94 (277)
T PRK13642 31 TKGEWVSIIGQNGSGKSTTARLIDGLFEEF---------------EGKVKIDGELLTAENVWNLRRKIGMVFQNPD-NQF 94 (277)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCC---------------CCEEEECCEECCcCCHHHHhcceEEEEECHH-Hhh
Confidence 689999999999999999999999997665 8999999975432211223456789999872 245
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...|+.+|+.+..... ...++.+.+.++.. -..+.+...+|+||+||++|||||..+|.++|+|||
T Consensus 95 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEP 167 (277)
T PRK13642 95 VGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNML-------DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDES 167 (277)
T ss_pred ccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-------hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5569999997643211 11122333332221 123555667788999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 168 t 168 (277)
T PRK13642 168 T 168 (277)
T ss_pred c
Confidence 6
No 145
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.72 E-value=1.2e-18 Score=163.35 Aligned_cols=122 Identities=19% Similarity=0.229 Sum_probs=90.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|...........+..++|++|++ .++
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~--~~~ 94 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLEAE---------------EGKIEIDGIDISTIPLEDLRSSLTIIPQDP--TLF 94 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccCCC---------------CCeEEECCEEhHHCCHHHHHhhEEEEecCC--ccc
Confidence 689999999999999999999999997655 899999998543322222345688999998 667
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.. |+.+|+.++..... +.+.+.+. ++.....+|+|++||++|||++..+|+++|+|||+
T Consensus 95 ~~-tv~~~l~~~~~~~~---~~~~~~l~-----------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 153 (207)
T cd03369 95 SG-TIRSNLDPFDEYSD---EEIYGALR-----------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEAT 153 (207)
T ss_pred Cc-cHHHHhcccCCCCH---HHHHHHhh-----------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc
Confidence 64 99998865421111 11122221 23344456779999999999999999999999997
No 146
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.72 E-value=1.2e-18 Score=158.93 Aligned_cols=99 Identities=19% Similarity=0.211 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|...........+...+|++|++ .++
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~--~~~ 88 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLRPT---------------SGRVRLDGADISQWDPNELGDHVGYLPQDD--ELF 88 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCC---------------CCeEEECCEEcccCCHHHHHhheEEECCCC--ccc
Confidence 589999999999999999999999997666 899999987543322222344578888888 566
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.. |+.+|+ +|+|++||++||+|+..+|.++|+|||+
T Consensus 89 ~~-tv~~~l-------------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt 124 (173)
T cd03246 89 SG-SIAENI-------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPN 124 (173)
T ss_pred cC-cHHHHC-------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 53 777765 3449999999999999999999999997
No 147
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.4e-19 Score=173.54 Aligned_cols=130 Identities=17% Similarity=0.079 Sum_probs=93.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|++.+. +|+|.++|...............+|++|++ .++
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~--~~~ 88 (255)
T PRK11231 26 PTGKITALIGPNGCGKSTLLKCFARLLTPQ---------------SGTVFLGDKPISMLSSRQLARRLALLPQHH--LTP 88 (255)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCCC---------------CcEEEECCEEhHHCCHHHHhhheEEecccC--CCC
Confidence 589999999999999999999999987655 899999987533221112234578899988 677
Q ss_pred cCCCcccCHHHHHH-----------HHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 188 GHLTPNANLELYQH-----------CVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 188 g~~sv~~n~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
...|+.+|+.+... .....+..+.+.++.. ...+.....+|+||+||++||+|+..+|.++|
T Consensus 89 ~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LS~G~~qrv~laral~~~p~lll 161 (255)
T PRK11231 89 EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-------HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVL 161 (255)
T ss_pred CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH-------HHHcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 77799999876321 0111222333333221 12345556677899999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 162 lDEP~ 166 (255)
T PRK11231 162 LDEPT 166 (255)
T ss_pred EcCCc
Confidence 99996
No 148
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.5e-19 Score=177.35 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=93.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc-ccccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI-ERPATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~-~~~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+++|+|+..++ +|+|.++|....... ....+..++|++|++...+
T Consensus 34 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~ 98 (280)
T PRK13633 34 KKGEFLVILGRNGSGKSTIAKHMNALLIPS---------------EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQI 98 (280)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCEeccccccHHHHhhheEEEecChhhhh
Confidence 689999999999999999999999997666 899999997543211 1123456789999874334
Q ss_pred ecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCc
Q psy2946 187 YGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE 259 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DE 259 (455)
++ .++.+|+.+.... ....++.+.+.++... ..+.....+|+||+||++||++|..+|.++|+||
T Consensus 99 ~~-~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-------~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 170 (280)
T PRK13633 99 VA-TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYE-------YRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDE 170 (280)
T ss_pred cc-ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHh-------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 54 5788888765332 1122333333333221 2334445567799999999999999999999999
Q ss_pred hh
Q psy2946 260 RL 261 (455)
Q Consensus 260 pl 261 (455)
|+
T Consensus 171 Pt 172 (280)
T PRK13633 171 PT 172 (280)
T ss_pred Cc
Confidence 96
No 149
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.72 E-value=4.9e-19 Score=166.71 Aligned_cols=125 Identities=20% Similarity=0.118 Sum_probs=90.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..++ +|+|.++|.... ..+..++|++|++ .++
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---------------~G~i~~~g~~~~-----~~~~~i~~v~q~~--~~~ 80 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLLKPT---------------SGSIRVFGKPLE-----KERKRIGYVPQRR--SID 80 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCCC---------------CCEEEECCccHH-----HHHhheEEecccc--ccc
Confidence 689999999999999999999999997665 899999887432 1234578899987 432
Q ss_pred --cCCCcccCHHHHHHH-----------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEE
Q psy2946 188 --GHLTPNANLELYQHC-----------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNIL 254 (455)
Q Consensus 188 --g~~sv~~n~~~~~~~-----------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~v 254 (455)
...|+.+|+.+.... ..+.++.+.+.++... ..+.+...+|+||+||++||+|+..+|.+
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LSgG~~qrv~la~al~~~p~l 153 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE-------LADRQIGELSGGQQQRVLLARALVQDPDL 153 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH-------HHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 236899998763221 1122333333333221 12334445677999999999999999999
Q ss_pred EecCchh
Q psy2946 255 VLDQERL 261 (455)
Q Consensus 255 ll~DEpl 261 (455)
+|+|||+
T Consensus 154 lllDEPt 160 (213)
T cd03235 154 LLLDEPF 160 (213)
T ss_pred EEEeCCc
Confidence 9999997
No 150
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=4.6e-19 Score=171.49 Aligned_cols=130 Identities=16% Similarity=0.085 Sum_probs=93.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc-cccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE-RPATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~-~~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|........ .......+|++|++ .+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~--~~ 91 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFYKPT---------------GGTILLRGQHIEGLPGHQIARMGVVRTFQHV--RL 91 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCCC---------------cceEEECCEECCCCCHHHHHhcCeEEeccCc--cc
Confidence 589999999999999999999999997666 8999999975432211 11123467788988 78
Q ss_pred ecCCCcccCHHHHHHH----------H------------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHH
Q psy2946 187 YGHLTPNANLELYQHC----------V------------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMAC 244 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~----------~------------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~i 244 (455)
+..+|+.+|+.+.... . ...+..+.+.++.. ...+.....+|+||+||++|
T Consensus 92 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-------~~~~~~~~~LS~G~~qrv~l 164 (255)
T PRK11300 92 FREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-------EHANRQAGNLAYGQQRRLEI 164 (255)
T ss_pred CCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-------hhhhCChhhCCHHHHHHHHH
Confidence 8888999998864210 0 01112222222211 12344555667799999999
Q ss_pred HHHcCCCEEEEecCchh
Q psy2946 245 AKSLRVDNILVLDQERL 261 (455)
Q Consensus 245 a~al~~~~~vll~DEpl 261 (455)
|+|+..+|.++|+|||+
T Consensus 165 a~al~~~p~llllDEPt 181 (255)
T PRK11300 165 ARCMVTQPEILMLDEPA 181 (255)
T ss_pred HHHHhcCCCEEEEcCCc
Confidence 99999999999999996
No 151
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=7.9e-19 Score=168.07 Aligned_cols=130 Identities=17% Similarity=0.101 Sum_probs=92.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc-ccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER-PATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~-~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|......... ......+|++|++ .+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---------------~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~--~~ 91 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLGTLCGDPRAT---------------SGRIVFDGKDITDWQTAKIMREAVAIVPEGR--RV 91 (237)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCC---------------CceEEECCEecCCCCHHHHHHhCEEEeccCc--cc
Confidence 699999999999999999999999997665 89999999754322111 1234578899988 67
Q ss_pred ecCCCcccCHHHHHHH-----HHHHHHHHHHhhc-cCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 187 YGHLTPNANLELYQHC-----VERLWKSVDERMN-KDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~-----~~~l~~~~~~~~~-~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
|...|+.+|+.+.... ....++.+.+.+. ... ..+.....+|+|++||++||+++..+|.++|+|||
T Consensus 92 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-------~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEP 164 (237)
T PRK11614 92 FSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-------RRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP 164 (237)
T ss_pred CCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-------HHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 7778999998763211 1111222222221 110 11223344567999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 165 t 165 (237)
T PRK11614 165 S 165 (237)
T ss_pred c
Confidence 7
No 152
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.7e-19 Score=176.15 Aligned_cols=131 Identities=17% Similarity=0.054 Sum_probs=90.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc--cccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE--RPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~--~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+|+|+|++.++ +|+|.++|........ ...+..++|++|++..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~- 88 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---------------KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQ- 88 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCCC---------------ccEEEECCEEcccccCCHHHHHhheEEEeeChhh-
Confidence 689999999999999999999999997666 8999999985421100 1223457889988721
Q ss_pred EecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecC
Q psy2946 186 NYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~D 258 (455)
++...++.+|+.+..... ......+.+.++... ..+.+...+|+||+||++||+++..+|.++|+|
T Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LSgG~~qrl~laraL~~~p~lllLD 161 (271)
T PRK13638 89 QIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH-------FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLD 161 (271)
T ss_pred ccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHh-------HhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 223457888887643221 111222333332211 124455566779999999999999999999999
Q ss_pred chh
Q psy2946 259 ERL 261 (455)
Q Consensus 259 Epl 261 (455)
||+
T Consensus 162 EPt 164 (271)
T PRK13638 162 EPT 164 (271)
T ss_pred CCc
Confidence 996
No 153
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.3e-18 Score=172.18 Aligned_cols=130 Identities=17% Similarity=0.168 Sum_probs=97.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc----ccccccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI----ERPATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~----~~~~~~~~~~~~q~p~ 183 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|....... ..+....++|++|++
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---------------~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~- 85 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGLTRPQ---------------KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDA- 85 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEEccccccccccchhhCCEEEEcCCc-
Confidence 589999999999999999999999997666 899999887543211 112345678999998
Q ss_pred EEEecCCCcccCHHHHHHH-HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 184 VYNYGHLTPNANLELYQHC-VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~-~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.+|+++|+.+|+.+.... ....++.+.+.++... ..+.....+|+||+||++|||||..+|.++|+|||+
T Consensus 86 -~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPt 156 (352)
T PRK11144 86 -RLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEP-------LLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPL 156 (352)
T ss_pred -ccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCch-------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 789999999999875331 1223344444443321 223444566779999999999999999999999996
No 154
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=3.4e-18 Score=160.75 Aligned_cols=129 Identities=23% Similarity=0.215 Sum_probs=94.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|....... +.+...+|++|++ .+|
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---------------~G~i~~~g~~~~~~~--~~~~~i~~~~q~~--~~~ 82 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFETPQ---------------SGRVLINGVDVTAAP--PADRPVSMLFQEN--NLF 82 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCEEcCcCC--HhHccEEEEeccc--ccC
Confidence 589999999999999999999999997665 899999887543211 1234578999998 778
Q ss_pred cCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...|+.+|+.+.... ....+..+.+.++... ..+.....+|+||+||++||+|+..+|.++|+|||
T Consensus 83 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP 155 (211)
T cd03298 83 AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAG-------LEKRLPGELSGGERQRVALARVLVRDKPVLLLDEP 155 (211)
T ss_pred CCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHH-------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 888999998764321 1122333333333221 12334445677999999999999999999999999
Q ss_pred hh
Q psy2946 261 LY 262 (455)
Q Consensus 261 l~ 262 (455)
+.
T Consensus 156 ~~ 157 (211)
T cd03298 156 FA 157 (211)
T ss_pred cc
Confidence 73
No 155
>KOG0055|consensus
Probab=99.72 E-value=5.5e-19 Score=195.19 Aligned_cols=136 Identities=20% Similarity=0.215 Sum_probs=99.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|+.|+|+|+|||||||++++|.++ +||.+|+|.++|........+.++..+|.++|+| .+|
T Consensus 377 ~~G~~valVG~SGsGKST~i~LL~Rf---------------ydP~~G~V~idG~di~~~~~~~lr~~iglV~QeP--vlF 439 (1228)
T KOG0055|consen 377 PSGQTVALVGPSGSGKSTLIQLLARF---------------YDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEP--VLF 439 (1228)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh---------------cCCCCceEEEcCccchhcchHHHHhhcCeeeech--hhh
Confidence 89999999999999999999999999 4566999999999888777777888899999999 666
Q ss_pred cCCCcccCHHHHHHH-HHHHHHHHHHhhccC----CCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHC-VERLWKSVDERMNKD----SKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-~~~l~~~~~~~~~~~----~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
. .|++||+.+...- ......+..+..... .......-.+--.|..+|+|||||++|||||..||+|+|+||++
T Consensus 440 ~-~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaT 517 (1228)
T KOG0055|consen 440 A-TTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEAT 517 (1228)
T ss_pred c-ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcc
Confidence 5 4999999987521 111111111110000 00011111222345567889999999999999999999999985
No 156
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.72 E-value=5.6e-19 Score=171.67 Aligned_cols=133 Identities=17% Similarity=0.115 Sum_probs=94.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc-----ccccccCCCCcccCc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI-----ERPATIEDGFSQLAP 182 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~-----~~~~~~~~~~~~q~p 182 (455)
.+|++++|+|+||||||||+++|+|+..++ ++.+|+|.++|....... ....+...+|++|++
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~------------~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGLITGD------------KSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCCC------------CCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 689999999999999999999999987543 012589999997543211 012234578999998
Q ss_pred eEEEecCCCcccCHHHHHH---------------HHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHH
Q psy2946 183 IVYNYGHLTPNANLELYQH---------------CVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKS 247 (455)
Q Consensus 183 ~~~~~g~~sv~~n~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~a 247 (455)
.+++.+|+.+|+.+... .....+..+.+.++... ..|.....+|+||+||++||||
T Consensus 96 --~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrv~lara 166 (262)
T PRK09984 96 --NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVH-------FAHQRVSTLSGGQQQRVAIARA 166 (262)
T ss_pred --ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHH-------HHhCCccccCHHHHHHHHHHHH
Confidence 77888899999875421 01112233333333211 2344455567799999999999
Q ss_pred cCCCEEEEecCchh
Q psy2946 248 LRVDNILVLDQERL 261 (455)
Q Consensus 248 l~~~~~vll~DEpl 261 (455)
+..+|.++|+|||+
T Consensus 167 l~~~p~llllDEPt 180 (262)
T PRK09984 167 LMQQAKVILADEPI 180 (262)
T ss_pred HhcCCCEEEecCcc
Confidence 99999999999996
No 157
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=3e-19 Score=178.73 Aligned_cols=139 Identities=13% Similarity=0.049 Sum_probs=96.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc----cccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP----ATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~----~~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+++|+|++.+. .-|.+|+|.++|........+. ....++|++|++.
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-----------~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLIDYP-----------GRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCC-----------CCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 699999999999999999999999987531 0123899999998654322211 1235799999986
Q ss_pred EEEecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEE
Q psy2946 184 VYNYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILV 255 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vl 255 (455)
..+++.+++.+++....... ...+..+.++++.... ....+.....+|+||+||++||+||+.+|.++
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~----~~~l~~~p~~LSgGq~QRv~iArAL~~~P~ll 175 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP----ASRLDVYPHQLSGGMSQRVMIAMAIACRPKLL 175 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh----HHHHhCCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 56778888877665433221 1223344444443211 01234455667789999999999999999999
Q ss_pred ecCchh
Q psy2946 256 LDQERL 261 (455)
Q Consensus 256 l~DEpl 261 (455)
|+|||+
T Consensus 176 ilDEPt 181 (326)
T PRK11022 176 IADEPT 181 (326)
T ss_pred EEeCCC
Confidence 999996
No 158
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.2e-19 Score=172.41 Aligned_cols=138 Identities=13% Similarity=0.115 Sum_probs=93.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc--cccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+|+|+|+..+. . ..|.+|+|.++|...... ....++..++|++|++ .
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p-------~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~--~ 104 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMYELY---P-------EQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKP--T 104 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccccC---C-------CCCcceEEEECCEEccccccchHHHhcceEEEecCC--c
Confidence 689999999999999999999999987521 0 013389999999754211 1112345688999998 6
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
++. .|+.+|+.+..... .+..+.+.+.++..... .-..+.....+|+||+||++||+|+..+|+++|+
T Consensus 105 ~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllL 180 (260)
T PRK10744 105 PFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV---KDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLL 180 (260)
T ss_pred cCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh---HHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 666 69999987653221 11222333333221000 0012334445677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 181 DEPt 184 (260)
T PRK10744 181 DEPC 184 (260)
T ss_pred cCCC
Confidence 9997
No 159
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.2e-18 Score=168.79 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=103.9
Q ss_pred CcchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCC
Q psy2946 84 TPMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVP 159 (455)
Q Consensus 84 t~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~ 159 (455)
.||+.+.|+++.|++ ..++++. .+|++++|+|+||||||||+++|+|+..+. +|+|.++
T Consensus 8 ~~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~---------------~G~v~~~ 70 (257)
T PRK14246 8 EDVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY---------------DSKIKVD 70 (257)
T ss_pred hhheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------cCceeEc
Confidence 455555666665543 2233332 799999999999999999999999987655 7777666
Q ss_pred Ceeecc------ccccccccCCCCcccCceEEEecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccE
Q psy2946 160 GTIGAL------VIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGM 225 (455)
Q Consensus 160 G~~~~~------~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~ 225 (455)
|.+... ......+..++|++|++ .+++..|+.+|+.+..... ...+..+.+.++..... ..
T Consensus 71 G~~~~~g~~~~~~~~~~~~~~i~~~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~ 145 (257)
T PRK14246 71 GKVLYFGKDIFQIDAIKLRKEVGMVFQQP--NPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV---YD 145 (257)
T ss_pred CEEEECCcccccCCHHHHhcceEEEccCC--ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc---hh
Confidence 654321 11112345578999998 7788889999998754321 11122333333322100 01
Q ss_pred EEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 226 IINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 226 iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
..+.....+|+|++||++||||+..+|.++|+|||+
T Consensus 146 ~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt 181 (257)
T PRK14246 146 RLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPT 181 (257)
T ss_pred hhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 124455567779999999999999999999999997
No 160
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.72 E-value=1.3e-18 Score=160.88 Aligned_cols=131 Identities=17% Similarity=0.113 Sum_probs=91.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc--cccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE--RPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~--~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+..++ +|+|.++|........ .......+|++|++...
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLLRPQ---------------SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 689999999999999999999999997665 8999998875421101 12234578899987322
Q ss_pred EecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecC
Q psy2946 186 NYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~D 258 (455)
++ ..|+.+|+.+..... .+.+..+.+.++... ..+.....+|+|++||++||||+..+|.++|+|
T Consensus 81 ~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 81 LF-AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASG-------LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred cc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchh-------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 34 359999987643211 112223333333211 234455566779999999999999999999999
Q ss_pred chh
Q psy2946 259 ERL 261 (455)
Q Consensus 259 Epl 261 (455)
||+
T Consensus 153 EPt 155 (190)
T TIGR01166 153 EPT 155 (190)
T ss_pred CCc
Confidence 997
No 161
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.9e-19 Score=172.89 Aligned_cols=130 Identities=19% Similarity=0.181 Sum_probs=92.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeec-c-c----cccccccCCCCcccC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGA-L-V----IERPATIEDGFSQLA 181 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~-~-~----~~~~~~~~~~~~~q~ 181 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|.... . . .....+..++|++|.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 90 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLEMPR---------------SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEecccccccchhhHHHHHhheEEEecC
Confidence 589999999999999999999999987655 899999987531 0 0 001223457899998
Q ss_pred ceEEEecCCCcccCHHHHH-HH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEE
Q psy2946 182 PIVYNYGHLTPNANLELYQ-HC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNI 253 (455)
Q Consensus 182 p~~~~~g~~sv~~n~~~~~-~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~ 253 (455)
+ .+|..+|+.+|+.+.. .. ....+..+.+.++... ..+.....+|+||+||++||||+..+|.
T Consensus 91 ~--~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (242)
T PRK11124 91 Y--NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP-------YADRFPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred c--cccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------hhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8 7888889999986421 11 1112223333332211 2233444567799999999999999999
Q ss_pred EEecCchh
Q psy2946 254 LVLDQERL 261 (455)
Q Consensus 254 vll~DEpl 261 (455)
++|+|||+
T Consensus 162 llilDEPt 169 (242)
T PRK11124 162 VLLFDEPT 169 (242)
T ss_pred EEEEcCCC
Confidence 99999997
No 162
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.72 E-value=6.6e-19 Score=169.68 Aligned_cols=138 Identities=15% Similarity=0.090 Sum_probs=94.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc--cccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+..+. ... +.+|+|.++|...... .....+..++|++|++ .
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~~~-------~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~--~ 92 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMNDLV---PGV-------RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKP--N 92 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCCCC---cCC-------CCceEEEECCEEccccccchHHHHhheEEEecCc--c
Confidence 689999999999999999999999996432 000 1179999988754321 1112345678999988 6
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
++. .|+.+|+.+..... ...+..+.+.++..... ....+.....+|+||+||++||+||..+|.++|+
T Consensus 93 ~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 168 (247)
T TIGR00972 93 PFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV---KDRLHDSALGLSGGQQQRLCIARALAVEPEVLLL 168 (247)
T ss_pred cCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch---hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 777 89999987643221 11222333333322100 0123445556677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 169 DEPt 172 (247)
T TIGR00972 169 DEPT 172 (247)
T ss_pred eCCc
Confidence 9997
No 163
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4e-19 Score=173.38 Aligned_cols=138 Identities=17% Similarity=0.163 Sum_probs=92.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc--cccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+..+. .. -|.+|+|.++|...... .....+..++|++|++ .
T Consensus 37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~~-------~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~--~ 104 (269)
T PRK14259 37 PRGKVTALIGPSGCGKSTVLRSLNRMNDLI---EG-------CSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP--N 104 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccccc---CC-------CCCceEEEECCEEcccccCCHHHHhhceEEEccCC--c
Confidence 689999999999999999999999986421 00 02389999988753211 0112334578999998 6
Q ss_pred EecCCCcccCHHHHHHHH------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCc
Q psy2946 186 NYGHLTPNANLELYQHCV------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE 259 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DE 259 (455)
+|.. |+.+|+.+..... ......+.+.++.... . .-..+.....+|+||+||++||+||..+|+++|+||
T Consensus 105 l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--l-~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 180 (269)
T PRK14259 105 PFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAVWDE--C-KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDE 180 (269)
T ss_pred cchh-hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch--h-hhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 6764 9999998654321 1112222233222110 0 012345555677899999999999999999999999
Q ss_pred hh
Q psy2946 260 RL 261 (455)
Q Consensus 260 pl 261 (455)
|+
T Consensus 181 Pt 182 (269)
T PRK14259 181 PC 182 (269)
T ss_pred CC
Confidence 97
No 164
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=8.3e-19 Score=170.09 Aligned_cols=139 Identities=17% Similarity=0.088 Sum_probs=94.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecc--ccccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGAL--VIERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~--~~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+..+. . ..|.+|+|.++|..... ......+..++|++|.+ .
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~---~-------~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~--~ 95 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRMHEVI---P-------GARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRP--N 95 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCcc---c-------CCCcceEEEECCEeccccccChHHHhcceEEEcccc--c
Confidence 589999999999999999999999987532 0 00238999999875421 11112345678999988 7
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
++...|+.+|+.+..... .+.++.+.+.++..... ....+.....+|+||+||++||||+..+|.++|+
T Consensus 96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 172 (258)
T PRK14241 96 PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV---KDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLM 172 (258)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh---hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 788889999987654221 11222333333221000 0112344555677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 173 DEPt 176 (258)
T PRK14241 173 DEPC 176 (258)
T ss_pred cCCC
Confidence 9997
No 165
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.71 E-value=6.9e-19 Score=170.58 Aligned_cols=131 Identities=17% Similarity=0.091 Sum_probs=94.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc-------------ccccccC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI-------------ERPATIE 174 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~-------------~~~~~~~ 174 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|....... ....+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLEKPS---------------EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTR 93 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CeEEEECCEEcccccccccccccccchHHHHHhhc
Confidence 689999999999999999999999997655 899999887532100 0122345
Q ss_pred CCCcccCceEEEecCCCcccCHHHHHH-H-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHH
Q psy2946 175 DGFSQLAPIVYNYGHLTPNANLELYQH-C-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAK 246 (455)
Q Consensus 175 ~~~~~q~p~~~~~g~~sv~~n~~~~~~-~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~ 246 (455)
.+|++|++ .++...|+.+|+.+... . ....+..+.++++.. ....+.....+|+|++||++|||
T Consensus 94 i~~v~q~~--~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~~LS~G~~qrv~lar 165 (257)
T PRK10619 94 LTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGID------ERAQGKYPVHLSGGQQQRVSIAR 165 (257)
T ss_pred eEEEecCc--ccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCC------hhhhhCCcccCCHHHHHHHHHHH
Confidence 78999998 78888899999875321 1 112223333443322 11124455567779999999999
Q ss_pred HcCCCEEEEecCchh
Q psy2946 247 SLRVDNILVLDQERL 261 (455)
Q Consensus 247 al~~~~~vll~DEpl 261 (455)
||..+|.++|+|||+
T Consensus 166 al~~~p~llllDEPt 180 (257)
T PRK10619 166 ALAMEPEVLLFDEPT 180 (257)
T ss_pred HHhcCCCEEEEeCCc
Confidence 999999999999996
No 166
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=8e-19 Score=170.31 Aligned_cols=137 Identities=14% Similarity=0.053 Sum_probs=92.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC-CCCCcCCCCCeeeccc--cccccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD-VGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD-pgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+++|+|+..+. .+ +.+|+|.++|...... .....+..++|++|++
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-----------p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~-- 102 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMIQMV-----------PNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKG-- 102 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhccCC-----------CCCCCceEEEECCEEccccccCHHHHhhceEEEecCC--
Confidence 699999999999999999999999987521 00 1278999988754211 0112344678999988
Q ss_pred EEecCCCcccCHHHHHHHH-----H---HHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 185 YNYGHLTPNANLELYQHCV-----E---RLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~-----~---~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.++.. |+.+|+.+..... . +.++.+.+.++..... ....+.....+|+||+||++||+++..+|.++|
T Consensus 103 ~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~l~~~~~~LS~Gq~qrv~laral~~~p~lll 178 (259)
T PRK14274 103 NPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV---KDRLHTQALSLSGGQQQRLCIARALATNPDVLL 178 (259)
T ss_pred ccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh---hhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 56664 8999987654321 1 1122222332221100 012344555667799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 179 lDEPt 183 (259)
T PRK14274 179 MDEPT 183 (259)
T ss_pred EcCCc
Confidence 99997
No 167
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.71 E-value=3.3e-18 Score=184.00 Aligned_cols=137 Identities=20% Similarity=0.177 Sum_probs=103.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+|++||||||++++|+++.. |.+|+|.++|..........++..+++++|++ ++|
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---------------~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~--~LF 415 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYD---------------PTSGEILIDGIDIRDISLDSLRKRIGIVSQDP--LLF 415 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC---------------CCCCeEEECCEehhhcCHHHHHHhccEEcccc--eee
Confidence 6999999999999999999999999954 44999999999888777777888899999999 788
Q ss_pred cCCCcccCHHHHHHH-HHHHHHHHHHhhccCC----CCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 188 GHLTPNANLELYQHC-VERLWKSVDERMNKDS----KTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-~~~l~~~~~~~~~~~~----~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
. .|+++|+.+.... ..+...+..+.....+ ..+...-.+.-.|-.+|+|||||++||||+..+++++++||++.
T Consensus 416 ~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTS 494 (567)
T COG1132 416 S-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATS 494 (567)
T ss_pred c-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 7 5999999997531 1111111111111000 01112234445567778899999999999999999999999973
No 168
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.71 E-value=7.8e-19 Score=178.23 Aligned_cols=130 Identities=16% Similarity=0.067 Sum_probs=96.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCee----eccccccc----cccCCCCcc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTI----GALVIERP----ATIEDGFSQ 179 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~----~~~~~~~~----~~~~~~~~~ 179 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|.. ........ ....++|++
T Consensus 48 ~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---------------~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 48 EEGEICVLMGLSGSGKSSLLRAVNGLNPVS---------------RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCC---------------CcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 699999999999999999999999997666 8999998852 11111111 124689999
Q ss_pred cCceEEEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCE
Q psy2946 180 LAPIVYNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDN 252 (455)
Q Consensus 180 q~p~~~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~ 252 (455)
|.+ .+|++.|+.+|+.+..... ...+.++.+.++... ..|.....+|+||+||++|||||..+|
T Consensus 113 Q~~--~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~-------~~~~~~~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 113 QKF--ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQ-------WADKKPGELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred CCC--cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-------hhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 998 8899999999998865321 122334444443321 234455567779999999999999999
Q ss_pred EEEecCchh
Q psy2946 253 ILVLDQERL 261 (455)
Q Consensus 253 ~vll~DEpl 261 (455)
.++|+|||+
T Consensus 184 ~ILLlDEPt 192 (382)
T TIGR03415 184 DILLMDEPF 192 (382)
T ss_pred CEEEEECCC
Confidence 999999996
No 169
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.71 E-value=7.4e-19 Score=186.21 Aligned_cols=130 Identities=18% Similarity=0.110 Sum_probs=95.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc-ccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER-PATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~-~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|......... ..+..++|++|++ .+
T Consensus 28 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---------------~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~--~~ 90 (501)
T PRK10762 28 YPGRVMALVGENGAGKSTMMKVLTGIYTRD---------------AGSILYLGKEVTFNGPKSSQEAGIGIIHQEL--NL 90 (501)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCCCC---------------CcEEEECCEECCCCCHHHHHhCCEEEEEcch--hc
Confidence 689999999999999999999999997666 89999998754221111 1234578999988 78
Q ss_pred ecCCCcccCHHHHHHH-----------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEE
Q psy2946 187 YGHLTPNANLELYQHC-----------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILV 255 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~-----------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vl 255 (455)
+..+|+.+|+.+.... ....+..+.++++... ..|.+...+|+||+||++||+||..+|.++
T Consensus 91 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LSgG~~qrv~la~al~~~p~ll 163 (501)
T PRK10762 91 IPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-------SSDKLVGELSIGEQQMVEIAKVLSFESKVI 163 (501)
T ss_pred cCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-------CccCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 8889999998764221 1112233344443321 124445566779999999999999999999
Q ss_pred ecCchh
Q psy2946 256 LDQERL 261 (455)
Q Consensus 256 l~DEpl 261 (455)
|+|||+
T Consensus 164 lLDEPt 169 (501)
T PRK10762 164 IMDEPT 169 (501)
T ss_pred EEeCCc
Confidence 999996
No 170
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.71 E-value=6.4e-19 Score=170.91 Aligned_cols=133 Identities=20% Similarity=0.107 Sum_probs=91.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCee-----eccccccc----cccCCCCc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTI-----GALVIERP----ATIEDGFS 178 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~-----~~~~~~~~----~~~~~~~~ 178 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|.. ........ .....+|+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v 94 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARLAPD---------------AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFV 94 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CCEEEECCccccccccccCCHHHHHHHhhcceEEE
Confidence 699999999999999999999999997665 8889888864 22211111 23357889
Q ss_pred ccCceEEEecCCCcccCHHHHHHH--------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCC
Q psy2946 179 QLAPIVYNYGHLTPNANLELYQHC--------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRV 250 (455)
Q Consensus 179 ~q~p~~~~~g~~sv~~n~~~~~~~--------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~ 250 (455)
+|++...++...++.+|+.+.... ....+.++.+.++... ...+.....+|+||+||++|||||..
T Consensus 95 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~~LS~Gq~qrl~laral~~ 168 (258)
T PRK11701 95 HQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA------ARIDDLPTTFSGGMQQRLQIARNLVT 168 (258)
T ss_pred eeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh------hHHhCCCccCCHHHHHHHHHHHHHhc
Confidence 998743456666777777543211 1112223333333211 12344555667799999999999999
Q ss_pred CEEEEecCchh
Q psy2946 251 DNILVLDQERL 261 (455)
Q Consensus 251 ~~~vll~DEpl 261 (455)
+|.++|+|||+
T Consensus 169 ~p~llllDEPt 179 (258)
T PRK11701 169 HPRLVFMDEPT 179 (258)
T ss_pred CCCEEEEcCCc
Confidence 99999999997
No 171
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=2.3e-18 Score=159.38 Aligned_cols=146 Identities=15% Similarity=0.121 Sum_probs=112.5
Q ss_pred chhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCe
Q psy2946 86 MNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGT 161 (455)
Q Consensus 86 ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~ 161 (455)
++++.++++.|++ +.+.+++ ++|++.+++|+|||||||++|+|+|++.++ +|.|+++|.
T Consensus 2 ~L~ie~vtK~Fg~--k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---------------~G~I~~~g~ 64 (300)
T COG4152 2 ALEIEGVTKSFGD--KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---------------EGEITWNGG 64 (300)
T ss_pred ceEEecchhccCc--eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---------------CceEEEcCc
Confidence 4566777888876 4555554 899999999999999999999999998776 999999997
Q ss_pred eeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCcc
Q psy2946 162 IGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIK 234 (455)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~ 234 (455)
... ......+||.|..- .+|+.+|+.|.+.|+..+. +..++.+.++++...... . .--.+
T Consensus 65 ~~~----~~~~~rIGyLPEER--GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~--~-----kIk~L 131 (300)
T COG4152 65 PLS----QEIKNRIGYLPEER--GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKT--K-----KIKEL 131 (300)
T ss_pred chh----hhhhhhcccChhhh--ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccccccc--c-----hHHHh
Confidence 543 23455689999887 8999999999999987763 334455555554432210 0 01123
Q ss_pred CCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 235 GDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 235 s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
|.|++|++.++.++.+.|.++|+||||
T Consensus 132 SKGnqQKIQfisaviHePeLlILDEPF 158 (300)
T COG4152 132 SKGNQQKIQFISAVIHEPELLILDEPF 158 (300)
T ss_pred hhhhhHHHHHHHHHhcCCCEEEecCCc
Confidence 569999999999999999999999997
No 172
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.2e-18 Score=164.31 Aligned_cols=129 Identities=21% Similarity=0.153 Sum_probs=94.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc----ccccccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI----ERPATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~----~~~~~~~~~~~~q~p~ 183 (455)
.+ ++++|+|+||||||||+++|+|++.+. +|+|.++|....... .......++|++|++
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~- 84 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEKPD---------------GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQY- 84 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCEecccccchhhhhhHhhcEEEEecCC-
Confidence 67 999999999999999999999997655 899988887543211 112234578899988
Q ss_pred EEEecCCCcccCHHHHHHH-----HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecC
Q psy2946 184 VYNYGHLTPNANLELYQHC-----VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~-----~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~D 258 (455)
.++...|+.+|+.+.... ....+..+.+.++.. -..+.....+|+||+||++||+|+..+|.++|+|
T Consensus 85 -~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 156 (214)
T cd03297 85 -ALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLD-------HLLNRYPAQLSGGEKQRVALARALAAQPELLLLD 156 (214)
T ss_pred -ccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCH-------hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 778788999998765432 112233333443321 1234455566779999999999999999999999
Q ss_pred chh
Q psy2946 259 ERL 261 (455)
Q Consensus 259 Epl 261 (455)
||+
T Consensus 157 EPt 159 (214)
T cd03297 157 EPF 159 (214)
T ss_pred CCc
Confidence 997
No 173
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=8.7e-19 Score=169.54 Aligned_cols=138 Identities=16% Similarity=0.108 Sum_probs=93.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc--cccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+|+|+|+..+. .. .|.+|+|.++|...... .....+..++|++|++ .
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~-------~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~--~ 98 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRMNDLV---EG-------IKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTP--N 98 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccCC---cC-------CCCceEEEECCEecccccccHHHHhhceEEEeecc--c
Confidence 689999999999999999999999997542 00 02379999998753211 1112345678999988 5
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
++. .|+.+|+.+..... ........+.++..... ....++....+|+||+||++|||++..+|.++|+
T Consensus 99 ~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~~~~LSgG~~qrv~laral~~~p~lllL 174 (254)
T PRK14273 99 PFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNTNALSLSGGQQQRLCIARTLAIEPNVILM 174 (254)
T ss_pred ccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 564 79999998754321 11122222222211000 0123445556677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 175 DEPt 178 (254)
T PRK14273 175 DEPT 178 (254)
T ss_pred eCCC
Confidence 9997
No 174
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.71 E-value=5.9e-18 Score=171.40 Aligned_cols=130 Identities=19% Similarity=0.166 Sum_probs=96.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc----ccccccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI----ERPATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~----~~~~~~~~~~~~q~p~ 183 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|....... ..+.+..++|++|++
T Consensus 21 ~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---------------~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~- 84 (354)
T TIGR02142 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---------------EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEA- 84 (354)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEECccCccccccchhhCCeEEEecCC-
Confidence 589999999999999999999999997666 899999987643211 112344578999998
Q ss_pred EEEecCCCcccCHHHHHHHH-----HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecC
Q psy2946 184 VYNYGHLTPNANLELYQHCV-----ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~~-----~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~D 258 (455)
.+|.++|+.+|+.+..... ...++.+.+.++... ..|.....+|+||+||++|||||..+|.++|+|
T Consensus 85 -~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~-------~~~~~~~~LSgGqkqRvalAraL~~~p~lllLD 156 (354)
T TIGR02142 85 -RLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGH-------LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMD 156 (354)
T ss_pred -ccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChh-------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 7888899999998754321 112333344433221 234455567779999999999999999999999
Q ss_pred chh
Q psy2946 259 ERL 261 (455)
Q Consensus 259 Epl 261 (455)
||+
T Consensus 157 EPt 159 (354)
T TIGR02142 157 EPL 159 (354)
T ss_pred CCC
Confidence 996
No 175
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2.5e-18 Score=172.42 Aligned_cols=139 Identities=13% Similarity=0.015 Sum_probs=97.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc----cccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP----ATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~----~~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+++|+|+..+. ..|.+|+|.++|.......... ....++|++|++.
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVTKDN-----------WRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccCCCC-----------CCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 689999999999999999999999987532 2244899999998643322111 1235789999985
Q ss_pred EEEecCCCcccCHHHHHHH-------------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCC
Q psy2946 184 VYNYGHLTPNANLELYQHC-------------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRV 250 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~-------------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~ 250 (455)
.++++.+++.+++...... ....+..+.++++.... ..+.+.....+|+||+||++||+||..
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~----~~~~~~~p~~LSgG~~QRv~iArAL~~ 175 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDH----KDAMRSFPYELTEGECQKVMIAIALAN 175 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCCh----HHHHhCCchhCCHHHHHHHHHHHHHHC
Confidence 5577888888887643211 11223344444443211 012344556677899999999999999
Q ss_pred CEEEEecCchh
Q psy2946 251 DNILVLDQERL 261 (455)
Q Consensus 251 ~~~vll~DEpl 261 (455)
+|.++|+|||+
T Consensus 176 ~P~llilDEPt 186 (330)
T PRK15093 176 QPRLLIADEPT 186 (330)
T ss_pred CCCEEEEeCCC
Confidence 99999999996
No 176
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.71 E-value=5.9e-18 Score=157.61 Aligned_cols=129 Identities=19% Similarity=0.106 Sum_probs=95.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|...... ........+|++|.+ .++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~--~~~ 85 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLLRPD---------------SGEVRWNGTALAEQ-RDEPHRNILYLGHLP--GLK 85 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------ccEEEECCEEcccc-hHHhhhheEEeccCc--ccc
Confidence 589999999999999999999999987655 89999888754322 122334567888877 677
Q ss_pred cCCCcccCHHHHHHHHH---HHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVE---RLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~---~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...|+.+|+.++..... ..+..+.+.++... ..+.+...+|+||+||++||+|+..+|.++++|||+
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 155 (198)
T TIGR01189 86 PELSALENLHFWAAIHGGAQRTIEDALAAVGLTG-------FEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPT 155 (198)
T ss_pred cCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHH-------HhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 77899999987654321 12233333333221 124455567779999999999999999999999996
No 177
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=9.4e-19 Score=172.28 Aligned_cols=132 Identities=17% Similarity=0.126 Sum_probs=95.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc----cccccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE----RPATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~----~~~~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|........ ..++..++|++|++.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---------------~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~ 95 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALLKPT---------------TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPE 95 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------CcEEEECCEECccccccchHHHHHhheEEEecChH
Confidence 589999999999999999999999997666 8999999975432111 123456899999874
Q ss_pred EEEecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 184 VYNYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
..+|. .|+.+|+.+.... ....+..+.+.++.. ....+.....+|+||+||++||+||+.+|+++|
T Consensus 96 ~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~------~~~~~~~~~~LSgGq~qrv~laraL~~~p~ill 168 (286)
T PRK13646 96 SQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFS------RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIV 168 (286)
T ss_pred hccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC------hhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 34555 3899999875422 112223333333321 112345566678899999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 169 lDEPt 173 (286)
T PRK13646 169 LDEPT 173 (286)
T ss_pred EECCc
Confidence 99996
No 178
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=8e-19 Score=173.08 Aligned_cols=132 Identities=16% Similarity=0.108 Sum_probs=96.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc----cccccccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV----IERPATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~----~~~~~~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|...... .....+..++|++|++.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~ 95 (290)
T PRK13634 31 PSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---------------SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPE 95 (290)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCC---------------CcEEEECCEECccccccchHHHHHhhEEEEeeCch
Confidence 689999999999999999999999997665 89999999854321 01123346789999874
Q ss_pred EEEecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 184 VYNYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
..++. .|+.+|+.+.... ..+.++.+.+.++.. ..+.+.+...+|+||+||++||+||+.+|+++|
T Consensus 96 ~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~------~~~~~~~~~~LSgGq~qrv~lAraL~~~P~lll 168 (290)
T PRK13634 96 HQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLP------EELLARSPFELSGGQMRRVAIAGVLAMEPEVLV 168 (290)
T ss_pred hhhhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCC------hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 34554 5999999875432 112233334444322 112355666778899999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 169 lDEPt 173 (290)
T PRK13634 169 LDEPT 173 (290)
T ss_pred EECCc
Confidence 99996
No 179
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=1.7e-19 Score=177.70 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=94.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc----ccccccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI----ERPATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~----~~~~~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|....... .......++|++|++.
T Consensus 31 ~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~ 95 (287)
T PRK13641 31 EEGSFVALVGHTGSGKSTLMQHFNALLKPS---------------SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPE 95 (287)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------CcEEEECCEECccccccchHHHHHhceEEEEeChh
Confidence 699999999999999999999999997666 999999997543210 1122345789999863
Q ss_pred EEEecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 184 VYNYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
..++ ..|+.+|+.+.... ....+..+.+.++... ...+.+...+|+||+||++||+||+.+|.++|
T Consensus 96 ~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~~~~LSgGq~qrl~laral~~~p~lLl 168 (287)
T PRK13641 96 AQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE------DLISKSPFELSGGQMRRVAIAGVMAYEPEILC 168 (287)
T ss_pred hhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh------hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 2344 46999999764321 1122333334333210 12244555677799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 169 LDEPt 173 (287)
T PRK13641 169 LDEPA 173 (287)
T ss_pred EECCC
Confidence 99996
No 180
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.71 E-value=2.9e-18 Score=166.93 Aligned_cols=133 Identities=16% Similarity=0.079 Sum_probs=94.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc---ccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER---PATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~---~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|......... ..+..++|++|++..
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLEKPA---------------QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 589999999999999999999999997665 89999999754322111 123457899998733
Q ss_pred EEecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 185 YNYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.++...|+.+|+.+..... ...+..+.+.++.. ....+.....+|+||+||++||||+..+|+++|
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~~LSgGe~qrv~laral~~~p~ill 173 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLR------SEDADKLPRQLSGGQLQRINIARALAVKPKLIV 173 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC------hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4566789999886543211 11223333333321 112344555567799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 174 LDEPt 178 (265)
T TIGR02769 174 LDEAV 178 (265)
T ss_pred EeCCc
Confidence 99996
No 181
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.71 E-value=3.1e-18 Score=160.29 Aligned_cols=128 Identities=17% Similarity=0.128 Sum_probs=92.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+++|+|+..++ +|+|.++|..... ......++|++|++...++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~~~~ 85 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIKES---------------SGSILLNGKPIKA---KERRKSIGYVMQDVDYQLF 85 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------ceEEEECCEEhhh---HHhhcceEEEecChhhhhh
Confidence 589999999999999999999999997665 8999999875422 2233457899998621233
Q ss_pred cCCCcccCHHHHHHHHH---HHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVE---RLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~---~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
..|+.+|+.++..... ..+..+.+.++... ..+.....+|+||+||++||||+..+|.++|+|||+
T Consensus 86 -~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 154 (205)
T cd03226 86 -TDSVREELLLGLKELDAGNEQAETVLKDLDLYA-------LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT 154 (205)
T ss_pred -hccHHHHHhhhhhhcCccHHHHHHHHHHcCCch-------hcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 4699999987543221 22334444443321 123333456779999999999999999999999997
No 182
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.3e-18 Score=163.37 Aligned_cols=126 Identities=18% Similarity=0.163 Sum_probs=93.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|..... ..+...+|++|++ .++
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~----~~~~~i~~~~q~~--~~~ 82 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIILPD---------------SGEVLFDGKPLDI----AARNRIGYLPEER--GLY 82 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCCchhH----HHHccEEEeccCC--cCC
Confidence 589999999999999999999999987665 8999998874321 2234578889988 778
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...|+.+|+.++.... .+.+.++.+.++... ..+.....+|+||+||++||+|+..+|.++|+|||
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP 155 (210)
T cd03269 83 PKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-------YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEP 155 (210)
T ss_pred cCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-------HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8889999988754321 122233333333221 12333344567999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 156 ~ 156 (210)
T cd03269 156 F 156 (210)
T ss_pred C
Confidence 7
No 183
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.71 E-value=1.7e-18 Score=162.02 Aligned_cols=130 Identities=20% Similarity=0.139 Sum_probs=94.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc----cccccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE----RPATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~----~~~~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+++|+|++.+. +|+|.++|........ .......+|++|.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~- 85 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLEKFD---------------SGQVYLNGKETPPLNSKKASKFRREKLGYLFQNF- 85 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCC---------------CeEEEECCEEccccchhhHHHHHHhCeeEEecch-
Confidence 589999999999999999999999997665 8999999875321111 11234578899988
Q ss_pred EEEecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 184 VYNYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.++.+.|+.+|+.+.... ....+..+.+.++... ..+.....+|+||+||++||+|+..+|.++|
T Consensus 86 -~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~lS~G~~qr~~laral~~~p~lll 157 (206)
T TIGR03608 86 -ALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNL-------KLKQKIYELSGGEQQRVALARAILKDPPLIL 157 (206)
T ss_pred -hhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchh-------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 778888999998874321 1122233334333211 2234444567799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 158 lDEPt 162 (206)
T TIGR03608 158 ADEPT 162 (206)
T ss_pred EeCCc
Confidence 99996
No 184
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=8.1e-19 Score=167.59 Aligned_cols=134 Identities=17% Similarity=0.161 Sum_probs=91.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|...........+..++|++|++ .++
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~--~~~ 88 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFYDVD---------------SGRILIDGHDVRDYTLASLRRQIGLVSQDV--FLF 88 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccCC---------------CCEEEECCEEhhhCCHHHHHhhEEEeCCCC--eec
Confidence 689999999999999999999999997666 899999987543221122344578899998 666
Q ss_pred cCCCcccCHHHHHHHH-HHHHHHH------HHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-ERLWKSV------DERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-~~l~~~~------~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
. .|+.+|+.++.... ....... .+.+.... ... ....+.....+|+||+||+.||+|+..+|+++|+|||
T Consensus 89 ~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l-~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP 165 (234)
T cd03251 89 N-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELP-EGY-DTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEA 165 (234)
T ss_pred c-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcc-cCc-ceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 5 59999887642210 0111111 11110000 011 1224445556677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 166 ~ 166 (234)
T cd03251 166 T 166 (234)
T ss_pred c
Confidence 6
No 185
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.71 E-value=5e-18 Score=147.82 Aligned_cols=148 Identities=16% Similarity=0.151 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCee--
Q psy2946 89 YMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTI-- 162 (455)
Q Consensus 89 ~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~-- 162 (455)
+.|+++.|+. ..++.++ ..|+.+.++||+|+|||||+|.|.=+..+. +|++.+.|.-
T Consensus 5 v~~in~~yg~--~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~---------------sg~l~ia~~~fd 67 (242)
T COG4161 5 LNGINCFYGA--HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR---------------SGTLNIAGNHFD 67 (242)
T ss_pred Eccccccccc--chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC---------------CCeEEecccccc
Confidence 3445555554 2333332 799999999999999999999998777666 7887776652
Q ss_pred -ecccccc---ccccCCCCcccCceEEEecCCCcccCHHHHHHH--------HHHHHHHHHHhhccCCCCCcccEEEecC
Q psy2946 163 -GALVIER---PATIEDGFSQLAPIVYNYGHLTPNANLELYQHC--------VERLWKSVDERMNKDSKTNSSGMIINTC 230 (455)
Q Consensus 163 -~~~~~~~---~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~--------~~~l~~~~~~~~~~~~~~~~s~~iint~ 230 (455)
+....++ .++...|++||.- ++++++|+.+|+.-.-.. ....+.++.+++...... |..
T Consensus 68 ~s~~~~~k~i~~lr~~vgmvfqqy--~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~a-------dr~ 138 (242)
T COG4161 68 FSKTPSDKAIRDLRRNVGMVFQQY--NLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYA-------DRY 138 (242)
T ss_pred cccCccHHHHHHHHHhhhhhhhhh--ccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccccc-------ccC
Confidence 2222222 3567789999998 899999999987543211 222344455555443322 333
Q ss_pred CCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 231 GWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 231 g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
+..+|+||+||++|||||+..|.+++.|||..
T Consensus 139 plhlsggqqqrvaiaralmmkpqvllfdepta 170 (242)
T COG4161 139 PLHLSGGQQQRVAIARALMMEPQVLLFDEPTA 170 (242)
T ss_pred ceecccchhhhHHHHHHHhcCCcEEeecCccc
Confidence 44556699999999999999999999999963
No 186
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.71 E-value=2.3e-18 Score=168.11 Aligned_cols=135 Identities=21% Similarity=0.213 Sum_probs=93.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|++. . +|+|.++|..........++..++|++|++ .+|
T Consensus 28 ~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---------------~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~--~lf 89 (275)
T cd03289 28 SPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---------------EGDIQIDGVSWNSVPLQKWRKAFGVIPQKV--FIF 89 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcC-C---------------CcEEEECCEEhhhCCHHHHhhhEEEECCCc--ccc
Confidence 6899999999999999999999999964 4 799999997654432233455689999998 677
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCC----CCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSK----TNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~----~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.. |+.+|+..+............+.++.... .......+...|-.+|+||+||++||||+..+|.++|+|||+
T Consensus 90 ~~-tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpt 166 (275)
T cd03289 90 SG-TFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPS 166 (275)
T ss_pred hh-hHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 64 89999865432111112222222222110 000111122245567889999999999999999999999997
No 187
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=9.4e-19 Score=168.89 Aligned_cols=139 Identities=17% Similarity=0.111 Sum_probs=92.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc--cccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+..+. . ..|.+|+|.++|...... ........++|++|++ .
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~-------~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~--~ 94 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRMNDHI---P-------GFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKP--T 94 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccCC---C-------CCCcceEEEECCEEcccchhhHHHhhhhEEEEecCC--c
Confidence 589999999999999999999999986531 0 002389999999754321 0112345678999988 6
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
++. .|+.+|+.+..... .+......+.++..... ....+.....+|+||+||++||+|+..+|.++|+
T Consensus 95 ~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llll 170 (250)
T PRK14262 95 PFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV---KSELNKPGTRLSGGQQQRLCIARALAVEPEVILL 170 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh---HHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEE
Confidence 666 79999998653221 11122222222221100 0012344555677999999999999999999999
Q ss_pred Cchhh
Q psy2946 258 QERLY 262 (455)
Q Consensus 258 DEpl~ 262 (455)
|||+.
T Consensus 171 DEP~~ 175 (250)
T PRK14262 171 DEPTS 175 (250)
T ss_pred eCCcc
Confidence 99973
No 188
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.71 E-value=7.4e-19 Score=168.73 Aligned_cols=131 Identities=18% Similarity=0.074 Sum_probs=90.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH--hcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc-cccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA--VRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP-ATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~--~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~-~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+|+|+|+. .+. +|+|.++|.......... .....+|++|++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~-- 86 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---------------SGTILFKGQDLLELEPDERARAGLFLAFQYP-- 86 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---------------cceEEECCEecCCCCHHHhhccceEeeeccc--
Confidence 589999999999999999999999984 334 899999997543221111 123367889998
Q ss_pred EEecCCCcccCHHHHHHHHH--------------HHHHHHHHhhccCCCCCcccEEEecCCC-ccCCcHHHHHHHHHHcC
Q psy2946 185 YNYGHLTPNANLELYQHCVE--------------RLWKSVDERMNKDSKTNSSGMIINTCGW-IKGDGFKCLMACAKSLR 249 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~~--------------~l~~~~~~~~~~~~~~~~s~~iint~g~-~~s~G~~q~~~ia~al~ 249 (455)
.++..+|+.+|+.+...... +....+.+.++.. ....+.... .+|+||+||++||+++.
T Consensus 87 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~~~LS~G~~qrl~la~al~ 160 (243)
T TIGR01978 87 EEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMD------EEFLNRSVNEGFSGGEKKRNEILQMAL 160 (243)
T ss_pred cccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCc------hhhcccccccCcCHHHHHHHHHHHHHh
Confidence 77888899998876433211 1112222222221 111233333 36779999999999999
Q ss_pred CCEEEEecCchh
Q psy2946 250 VDNILVLDQERL 261 (455)
Q Consensus 250 ~~~~vll~DEpl 261 (455)
.+|.++|+|||+
T Consensus 161 ~~p~llllDEPt 172 (243)
T TIGR01978 161 LEPKLAILDEID 172 (243)
T ss_pred cCCCEEEecCCc
Confidence 999999999997
No 189
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=2.2e-19 Score=171.40 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=93.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|....... ......+|++|++ .++
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~~~~~~--~~~~~i~~~~q~~--~~~ 83 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA---------------SGSLTLNGQDHTTTP--PSRRPVSMLFQEN--NLF 83 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCeecCcCC--hhhccEEEEeccc--ccc
Confidence 689999999999999999999999997666 899999987543211 1234578899988 788
Q ss_pred cCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
..+|+.+|+.+.... ....+..+.+.++... .++.....+|+||+||++||+|+..+|.++|+|||
T Consensus 84 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 156 (232)
T PRK10771 84 SHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIED-------LLARLPGQLSGGQRQRVALARCLVREQPILLLDEP 156 (232)
T ss_pred cCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHH-------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 888999998753211 1112233333333211 23334445677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 157 ~ 157 (232)
T PRK10771 157 F 157 (232)
T ss_pred c
Confidence 6
No 190
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.71 E-value=5e-18 Score=157.64 Aligned_cols=105 Identities=24% Similarity=0.201 Sum_probs=84.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH--hcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA--VRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~--~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+. .+. +|+|.++|..... ...+..++|++|++ .
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---------------~G~i~~~g~~~~~---~~~~~~i~~~~q~~--~ 92 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---------------SGEVLINGRPLDK---RSFRKIIGYVPQDD--I 92 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---------------ceEEEECCEeCch---HhhhheEEEccCcc--c
Confidence 589999999999999999999999997 555 8999999875432 12344578899988 6
Q ss_pred EecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 186 NYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
++...|+.+|+.+..... .+|+||+||++||||+..+|.++|+|||+
T Consensus 93 ~~~~~t~~~~i~~~~~~~-----------------------------~LS~G~~qrv~laral~~~p~illlDEP~ 139 (194)
T cd03213 93 LHPTLTVRETLMFAAKLR-----------------------------GLSGGERKRVSIALELVSNPSLLFLDEPT 139 (194)
T ss_pred CCCCCcHHHHHHHHHHhc-----------------------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 777789998886532110 23449999999999999999999999997
No 191
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.71 E-value=1.5e-18 Score=162.41 Aligned_cols=123 Identities=24% Similarity=0.289 Sum_probs=85.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+|+||||||||+++|+|+..++ +|+|.++| .++|++|++ .++
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---------------~G~i~~~g-------------~i~~~~q~~--~l~ 78 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELEKL---------------SGSVSVPG-------------SIAYVSQEP--WIQ 78 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCCCC---------------CCeEEEcC-------------EEEEEecCc--hhc
Confidence 689999999999999999999999997665 89998888 257778888 566
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCC----CCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDS----KTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~----~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
..|+.+|+.+.............+.++... .........+......|.|++||++|||+++.+|+++|+|||+
T Consensus 79 -~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~ 155 (204)
T cd03250 79 -NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPL 155 (204)
T ss_pred -cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 458888887642211111111111111100 0000111234455567789999999999999999999999997
No 192
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=4.6e-19 Score=161.23 Aligned_cols=99 Identities=24% Similarity=0.272 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|...........+...+|++|++ .++
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~--~~~ 88 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---------------SGEILIDGVDLRDLDLESLRKNIAYVPQDP--FLF 88 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCC---------------CCEEEECCEEhhhcCHHHHHhhEEEEcCCc--hhc
Confidence 689999999999999999999999997666 899999987543222222334567888887 555
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
. .|+.+|+ +|+|++||++||+++..+|.++|+|||+
T Consensus 89 ~-~t~~e~l-------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~ 124 (171)
T cd03228 89 S-GTIRENI-------------------------------------LSGGQRQRIAIARALLRDPPILILDEAT 124 (171)
T ss_pred c-chHHHHh-------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 4 4776665 3449999999999999999999999997
No 193
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.1e-18 Score=168.55 Aligned_cols=139 Identities=14% Similarity=0.076 Sum_probs=93.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc--cccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE--RPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~--~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+..+. . ..+.+|+|.++|........ ...+...+|++|++ .
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~-------~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~--~ 95 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRMNDLI---S-------NVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKP--N 95 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCcc---c-------CCCCccEEEECCEecccccccHHHHHhheEEEecCC--C
Confidence 689999999999999999999999986531 0 00137999999875432111 12245578999998 6
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
+|. .|+.+|+.+..... .+.+..+.+.++..... ....+.....+|+||+||++||+++..+|.++|+
T Consensus 96 ~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 171 (251)
T PRK14270 96 PFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV---KDDLKKSALKLSGGQQQRLCIARTIAVKPDVILM 171 (251)
T ss_pred cCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh---hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 666 79999998654321 11122233333211000 0012344455677999999999999999999999
Q ss_pred Cchhh
Q psy2946 258 QERLY 262 (455)
Q Consensus 258 DEpl~ 262 (455)
|||+.
T Consensus 172 DEP~~ 176 (251)
T PRK14270 172 DEPTS 176 (251)
T ss_pred eCCcc
Confidence 99973
No 194
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.71 E-value=3.6e-18 Score=184.48 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=109.9
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.|++++ .++.|... .+.+ .|++..+ ++|++++|+|+||||||||+++|+|+..+.
T Consensus 334 ~I~~~~--vsf~y~~~-~~iL--~~inl~i-----------~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~--------- 388 (588)
T PRK13657 334 AVEFDD--VSFSYDNS-RQGV--EDVSFEA-----------KPGQTVAIVGPTGAGKSTLINLLQRVFDPQ--------- 388 (588)
T ss_pred eEEEEE--EEEEeCCC-Ccee--cceeEEE-----------CCCCEEEEECCCCCCHHHHHHHHhcCcCCC---------
Confidence 477775 77777532 2333 3333322 699999999999999999999999996655
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHH-HHHHHHHHHHHhhccCCC----CC
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQH-CVERLWKSVDERMNKDSK----TN 221 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~-~~~~l~~~~~~~~~~~~~----~~ 221 (455)
+|+|.++|........+.++..++|++|++ ++|.. |+++|+.++.. ...+......+..+..+. ..
T Consensus 389 ------~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~--~lf~~-Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~ 459 (588)
T PRK13657 389 ------SGRILIDGTDIRTVTRASLRRNIAVVFQDA--GLFNR-SIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPD 459 (588)
T ss_pred ------CCEEEECCEEhhhCCHHHHHhheEEEecCc--ccccc-cHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcc
Confidence 999999998766555555667789999999 77765 99999988631 111111111111111100 00
Q ss_pred cccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 222 SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 222 ~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.....+.-.|-.+|+||+||++|||||..+++++|+|||+
T Consensus 460 gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpt 499 (588)
T PRK13657 460 GYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEAT 499 (588)
T ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0111122235567789999999999999999999999996
No 195
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.71 E-value=9.8e-18 Score=157.91 Aligned_cols=128 Identities=20% Similarity=0.221 Sum_probs=94.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|...... .......+|++|++ .+|
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~--~~~~~~i~~v~q~~--~~~ 82 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---------------SGSIKVNDQSHTGL--APYQRPVSMLFQEN--NLF 82 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCC---------------CcEEEECCEEcccC--ChhccceEEEeccC--ccC
Confidence 689999999999999999999999997665 89999999754321 12345678999998 788
Q ss_pred cCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...|+.+|+.+.... .......+.+.++... ..+.....+|+||+||++||+|+..+|.++|+|||
T Consensus 83 ~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 155 (213)
T TIGR01277 83 AHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIAD-------YLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEP 155 (213)
T ss_pred CCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHH-------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 888999998753211 1112233333333211 22444456677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 156 t 156 (213)
T TIGR01277 156 F 156 (213)
T ss_pred C
Confidence 7
No 196
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.71 E-value=2.4e-18 Score=164.74 Aligned_cols=136 Identities=20% Similarity=0.146 Sum_probs=90.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|...........+..++|++|++ .++
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~--~~~ 88 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---------------NGRVLVDGHDLALADPAWLRRQVGVVLQEN--VLF 88 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCC---------------CCEEEECCeehHhcCHHHHhhcEEEEcCCc--hhc
Confidence 589999999999999999999999997766 899999987543221122344578999998 566
Q ss_pred cCCCcccCHHHHHHHH-HHHHHHHHHhhccCCC---C-CcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCV-ERLWKSVDERMNKDSK---T-NSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-~~l~~~~~~~~~~~~~---~-~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
. .|+.+|+.+..... ........+....... . .......+.....+|+||+||++||||+..+|.++|+|||+
T Consensus 89 ~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~ 166 (237)
T cd03252 89 N-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEAT 166 (237)
T ss_pred c-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc
Confidence 4 59999987632110 0001111111100000 0 00011123445566779999999999999999999999997
No 197
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.3e-18 Score=167.83 Aligned_cols=138 Identities=14% Similarity=0.113 Sum_probs=93.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecc-ccccccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGAL-VIERPATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~-~~~~~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+++|+|+..+. .. .|.+|++.++|..... ......+...+|++|++ .+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~-------~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~--~~ 94 (249)
T PRK14253 27 PARQVTALIGPSGCGKSTLLRCLNRMNDLI---EG-------VKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKP--NP 94 (249)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccc---cC-------CCCceEEEECCEEcccccchHHHHhheeEEecCC--Cc
Confidence 689999999999999999999999987542 11 1237899998875321 11112344578999998 66
Q ss_pred ecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecC
Q psy2946 187 YGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~D 258 (455)
|. .|+.+|+.+..... .+......+.++..... .-..+.+...+|+|++||++||||+..+|.++|+|
T Consensus 95 ~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 170 (249)
T PRK14253 95 FP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV---KDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMD 170 (249)
T ss_pred Cc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh---hHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 76 69999987643221 11111122222211100 01234556667889999999999999999999999
Q ss_pred chh
Q psy2946 259 ERL 261 (455)
Q Consensus 259 Epl 261 (455)
||+
T Consensus 171 EP~ 173 (249)
T PRK14253 171 EPT 173 (249)
T ss_pred CCC
Confidence 997
No 198
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=8.7e-19 Score=170.84 Aligned_cols=138 Identities=14% Similarity=0.084 Sum_probs=92.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc--cccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+|+|+|+..+. . -.|.+|+|.++|...... .....+..++|++|.+ .
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~-------~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~--~ 110 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMNDTI---D-------GCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKP--N 110 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccc---c-------CCCCceEEEECCEECcccccchHHHhhceEEEecCC--C
Confidence 689999999999999999999999997531 0 012389999999754321 0112344578999988 5
Q ss_pred EecCCCcccCHHHHHHHH---------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 186 NYGHLTPNANLELYQHCV---------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~---------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
+|.. |+.+|+.+..... ...+..+.+.++..... .-..+.....+|+||+||++||||+..+|.++|
T Consensus 111 ~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 186 (267)
T PRK14235 111 PFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV---KDRLHEPGTGLSGGQQQRLCIARAIAVSPEVIL 186 (267)
T ss_pred CCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh---hHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 6664 8999997643210 11122233333321100 001234445567799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 187 LDEPt 191 (267)
T PRK14235 187 MDEPC 191 (267)
T ss_pred EeCCC
Confidence 99997
No 199
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.70 E-value=2e-18 Score=184.80 Aligned_cols=162 Identities=17% Similarity=0.161 Sum_probs=108.6
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.+++++ ..+.|..+..+.++ |+++.+ ++|++++|+|+||||||||+++|+|+..+.
T Consensus 316 ~i~~~~--v~~~y~~~~~~~l~--~~~~~i-----------~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--------- 371 (544)
T TIGR01842 316 HLSVEN--VTIVPPGGKKPTLR--GISFRL-----------QAGEALAIIGPSGSGKSTLARLIVGIWPPT--------- 371 (544)
T ss_pred eEEEEE--EEEEcCCCCccccc--cceEEE-----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------
Confidence 477775 66777543333332 333221 699999999999999999999999996555
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHH-HHHHHHHHHHHhhccCC----CCC
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQH-CVERLWKSVDERMNKDS----KTN 221 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~-~~~~l~~~~~~~~~~~~----~~~ 221 (455)
+|+|.++|..........++...+|++|++ ++|.. |+++|+.++.. ...+......+..+..+ ...
T Consensus 372 ------~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~--~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 442 (544)
T TIGR01842 372 ------SGSVRLDGADLKQWDRETFGKHIGYLPQDV--ELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRLPD 442 (544)
T ss_pred ------CceEEECCEehhhCCHHHHhhheEEecCCc--ccccc-cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcc
Confidence 999999998655443344566789999999 77765 99999985432 11111111111111100 000
Q ss_pred cccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 222 SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 222 ~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.....++..|..+|+||+||++||||+..+|+++|+|||+
T Consensus 443 gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpt 482 (544)
T TIGR01842 443 GYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPN 482 (544)
T ss_pred ccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0112234456677889999999999999999999999997
No 200
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=3.5e-19 Score=175.05 Aligned_cols=131 Identities=17% Similarity=0.100 Sum_probs=93.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc--ccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI--ERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~--~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|....... ....+..++|++|++...
T Consensus 30 ~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---------------~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~ 94 (283)
T PRK13636 30 KKGEVTAILGGNGAGKSTLFQNLNGILKPS---------------SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQ 94 (283)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------ccEEEECCEECCCCcchHHHHHhhEEEEecCcchh
Confidence 689999999999999999999999997665 899999998652111 112345678999987322
Q ss_pred EecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecC
Q psy2946 186 NYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~D 258 (455)
++ ..|+.+|+.+..... .+.++.+.+.++... ..+.....+|+||+||++||+||..+|+++|+|
T Consensus 95 ~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-------~~~~~~~~LS~G~~qrl~laraL~~~p~lLilD 166 (283)
T PRK13636 95 LF-SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-------LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLD 166 (283)
T ss_pred hc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 33 468999997643221 122333333333221 234555566779999999999999999999999
Q ss_pred chh
Q psy2946 259 ERL 261 (455)
Q Consensus 259 Epl 261 (455)
||+
T Consensus 167 EPt 169 (283)
T PRK13636 167 EPT 169 (283)
T ss_pred CCc
Confidence 996
No 201
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.70 E-value=9.8e-19 Score=170.54 Aligned_cols=133 Identities=18% Similarity=0.121 Sum_probs=94.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc---cccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE---RPATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~---~~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|........ ...+..++|++|++..
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---------------sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~ 100 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVGLESPS---------------QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSIS 100 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CcEEEECCEeccccChhHHHHHHhcEEEEEcChhh
Confidence 689999999999999999999999987665 8999999975432211 1134467899998744
Q ss_pred EEecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 185 YNYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.|++..++.+|+.+..... ...+..+.+.++.. ....+.....+|+||+||++||+|+..+|.++|
T Consensus 101 ~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~~LS~Ge~qrl~laral~~~p~lll 174 (268)
T PRK10419 101 AVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLD------DSVLDKRPPQLSGGQLQRVCLARALAVEPKLLI 174 (268)
T ss_pred ccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCC------hhHhhCCCccCChHHHHHHHHHHHHhcCCCEEE
Confidence 5667788888876432210 11223333333221 112345556677899999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 175 LDEPt 179 (268)
T PRK10419 175 LDEAV 179 (268)
T ss_pred EeCCC
Confidence 99997
No 202
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.3e-18 Score=169.72 Aligned_cols=139 Identities=13% Similarity=0.097 Sum_probs=91.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc--cccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE--RPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~--~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+|+|+|+.... . ..|.+|+|.++|........ ......++|++|++ .
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~-------~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~--~ 112 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRMNDLI---P-------SARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP--N 112 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccccc---C-------CCCCceEEEECCEEcccccccHHHHhccEEEEecCC--c
Confidence 699999999999999999999999975310 0 01338999999875432111 12344578999988 6
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
+|.. |+.+|+.+..... ........+.++.... . .-..+.....+|+||+||++||||+..+|+++|+
T Consensus 113 ~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~-~~~~~~~~~~LSgGq~qrl~laral~~~p~lllL 188 (268)
T PRK14248 113 PFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDE--V-KDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLL 188 (268)
T ss_pred cCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcc--h-HHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 6664 8999987653211 1111222222221100 0 0012344455677999999999999999999999
Q ss_pred Cchhh
Q psy2946 258 QERLY 262 (455)
Q Consensus 258 DEpl~ 262 (455)
|||+.
T Consensus 189 DEPt~ 193 (268)
T PRK14248 189 DEPAS 193 (268)
T ss_pred cCCCc
Confidence 99973
No 203
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.1e-18 Score=169.83 Aligned_cols=138 Identities=15% Similarity=0.105 Sum_probs=91.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc--cccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+|+|+|+..+. . ..|.+|+|.++|...... .....+..++|++|++ .
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~-------~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~--~ 101 (264)
T PRK14243 34 PKNQITAFIGPSGCGKSTILRCFNRLNDLI---P-------GFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKP--N 101 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhccc---C-------CCCCceEEEECCEEccccccChHHHhhhEEEEccCC--c
Confidence 689999999999999999999999986421 0 002379999988743211 1122344578999988 6
Q ss_pred EecCCCcccCHHHHHHHH------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCc
Q psy2946 186 NYGHLTPNANLELYQHCV------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE 259 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DE 259 (455)
+|.. |+.+|+.+..... .+.+....+.++..... ....+.....+|+||+||++||||+..+|+++|+||
T Consensus 102 ~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 177 (264)
T PRK14243 102 PFPK-SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV---KDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDE 177 (264)
T ss_pred cccc-cHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhH---HHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 6664 8999987643211 11111222222211000 001244455567799999999999999999999999
Q ss_pred hh
Q psy2946 260 RL 261 (455)
Q Consensus 260 pl 261 (455)
|+
T Consensus 178 Pt 179 (264)
T PRK14243 178 PC 179 (264)
T ss_pred CC
Confidence 96
No 204
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=1.2e-18 Score=184.83 Aligned_cols=132 Identities=19% Similarity=0.074 Sum_probs=95.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc-ccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER-PATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~-~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+||||||||||+|+|+|+..+. |.+|+|.++|......... ..+..++|++|++ .+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-------------~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~--~~ 93 (506)
T PRK13549 29 RAGEIVSLCGENGAGKSTLMKVLSGVYPHG-------------TYEGEIIFEGEELQASNIRDTERAGIAIIHQEL--AL 93 (506)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCC-------------CCCeEEEECCEECCCCCHHHHHHCCeEEEEecc--cc
Confidence 689999999999999999999999986531 2389999998754321111 1234578999998 68
Q ss_pred ecCCCcccCHHHHHHH----------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 187 YGHLTPNANLELYQHC----------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~----------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
+..+|+.+|+.+.... ....+..+.+.++... ..|.....+|+||+||++||+||..+|.++|
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LSgGqkqrv~la~al~~~p~lll 166 (506)
T PRK13549 94 VKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-------NPATPVGNLGLGQQQLVEIAKALNKQARLLI 166 (506)
T ss_pred CCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-------CcccchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8889999998764321 1122333444443321 2244455677799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 167 LDEPt 171 (506)
T PRK13549 167 LDEPT 171 (506)
T ss_pred EeCCC
Confidence 99995
No 205
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.4e-18 Score=167.72 Aligned_cols=139 Identities=12% Similarity=0.085 Sum_probs=92.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc--ccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI--ERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~--~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+|+|+|+.... . .++.+|+|.++|....... ....+..++|++|++ .
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~-----~-----~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~--~ 94 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKSTFLRLFNRMNDLI-----P-----ATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRP--N 94 (250)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhhhhccc-----C-----CCCCceEEEECCEecccccccHHHHhhheEEEecCC--c
Confidence 689999999999999999999999974110 0 0123799999997543211 112344678999988 5
Q ss_pred EecCCCcccCHHHHHHH--------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHC--------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~--------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
++. .|+.+|+.+.... ....++.+.+.++..... .-..+...-.+|+||+||++||||+..+|+++|+
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 170 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV---KDKLKESAFALSGGQQQRLCIARAMAVSPSVLLM 170 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch---hhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 665 4999998764321 111223333333221100 0012344555677999999999999999999999
Q ss_pred Cchhh
Q psy2946 258 QERLY 262 (455)
Q Consensus 258 DEpl~ 262 (455)
|||+.
T Consensus 171 DEPt~ 175 (250)
T PRK14245 171 DEPAS 175 (250)
T ss_pred eCCCc
Confidence 99973
No 206
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.2e-18 Score=175.28 Aligned_cols=135 Identities=24% Similarity=0.214 Sum_probs=99.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+||+++|+|++|||||||+++|+|. +||.||+|+++|.......++.++..++++.|.+ ++|
T Consensus 362 ~~GEkvAIlG~SGsGKSTllqLl~~~---------------~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~--hlF 424 (573)
T COG4987 362 AQGEKVAILGRSGSGKSTLLQLLAGA---------------WDPQQGSITLNGVEIASLDEQALRETISVLTQRV--HLF 424 (573)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHhc---------------cCCCCCeeeECCcChhhCChhhHHHHHhhhccch--HHH
Confidence 69999999999999999999999997 4566999999999887776666777788888988 777
Q ss_pred cCCCcccCHHHHHHH--HHHHHHHHHHhhccCCCCCcc----cEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHC--VERLWKSVDERMNKDSKTNSS----GMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~--~~~l~~~~~~~~~~~~~~~~s----~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.. |+++|+.+...- .+++.+ ..++++..+..... .--++-.|..+|+|++||++|||+|..|.+++|+|||+
T Consensus 425 ~~-Tlr~NL~lA~~~AsDEel~~-aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPT 502 (573)
T COG4987 425 SG-TLRDNLRLANPDASDEELWA-ALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPT 502 (573)
T ss_pred HH-HHHHHHhhcCCCCCHHHHHH-HHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCc
Confidence 66 899999875321 111111 11121111110001 11233456677889999999999999999999999996
No 207
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.70 E-value=2.2e-18 Score=163.88 Aligned_cols=127 Identities=14% Similarity=0.039 Sum_probs=92.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh---cCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV---RMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~---~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+|+|+|+.. +. +|+|.++|..... ...+..++|++|++
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---------------~G~i~~~g~~~~~---~~~~~~i~~~~q~~-- 90 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---------------SGQILFNGQPRKP---DQFQKCVAYVRQDD-- 90 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---------------ceEEEECCEECCh---HHhcccEEEeCCCC--
Confidence 6899999999999999999999999976 44 8888888874321 12345678999998
Q ss_pred EEecCCCcccCHHHHHHHHH------H----HHHH-HHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEE
Q psy2946 185 YNYGHLTPNANLELYQHCVE------R----LWKS-VDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNI 253 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~~------~----l~~~-~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~ 253 (455)
.+|..+|+.+|+.+...... . .... ..+.+.. ..+.+.....+|+|++||++||+++..+|.
T Consensus 91 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~LS~G~~qrl~laral~~~p~ 163 (226)
T cd03234 91 ILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLAL-------TRIGGNLVKGISGGERRRVSIAVQLLWDPK 163 (226)
T ss_pred ccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcc-------hhhhcccccCcCHHHHHHHHHHHHHHhCCC
Confidence 77888899999987533210 0 0111 1111111 112234444567799999999999999999
Q ss_pred EEecCchh
Q psy2946 254 LVLDQERL 261 (455)
Q Consensus 254 vll~DEpl 261 (455)
++|+|||+
T Consensus 164 illlDEP~ 171 (226)
T cd03234 164 VLILDEPT 171 (226)
T ss_pred EEEEeCCC
Confidence 99999996
No 208
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.7e-18 Score=167.23 Aligned_cols=138 Identities=15% Similarity=0.056 Sum_probs=91.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc--ccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI--ERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~--~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+.... | -.+.+|+|.++|....... ...++..++|++|++ .
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------p----~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~--~ 96 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSINRMNDLN------P----EVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQP--N 96 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccccC------C----CCCccceEEECCEECcCcccchHhhhhcEEEEecCC--c
Confidence 689999999999999999999999974311 0 0012799999997543211 112344678999998 6
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
+|. .|+.+|+.+..... ...+..+.+.++..... .-..+.....+|+||+||++||+|+..+|.++|+
T Consensus 97 ~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 172 (252)
T PRK14239 97 PFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV---KDRLHDSALGLSGGQQQRVCIARVLATSPKIILL 172 (252)
T ss_pred cCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH---HHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 666 69999998653221 11112222222211000 0012444556677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 173 DEPt 176 (252)
T PRK14239 173 DEPT 176 (252)
T ss_pred cCCc
Confidence 9997
No 209
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.5e-18 Score=167.81 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=92.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc--cccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+..+.+ -.+.+|+|.++|...... .....+..++|++|++ .
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~--~ 97 (253)
T PRK14261 30 PKNRVTALIGPSGCGKSTLLRCFNRMNDLIP----------GCRITGDILYNGENIMDSGADVVALRRKIGMVFQRP--N 97 (253)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccccCCC----------CCCcceEEEECCEEccccccchhhhhceEEEEecCC--c
Confidence 6999999999999999999999999853210 001279999998754322 1112344578999998 6
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
+|.. |+.+|+.+..... ......+.+.++..... ....+.....+|+|++||++|||++..+|.++|+
T Consensus 98 ~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 173 (253)
T PRK14261 98 PFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV---KDRLHDSALSLSGGQQQRLCIARTLAVNPEVILM 173 (253)
T ss_pred cCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh---HHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6764 9999998754321 11112222222211000 0113455556777999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 174 DEP~ 177 (253)
T PRK14261 174 DEPC 177 (253)
T ss_pred eCCc
Confidence 9997
No 210
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.5e-18 Score=170.77 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=93.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc--cccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+..+. +..|.+|+|.++|...... .....+...+|++|++ .
T Consensus 63 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~----------~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~--~ 130 (285)
T PRK14254 63 PENQVTAMIGPSGCGKSTFLRCINRMNDLI----------DAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKP--N 130 (285)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCcc----------cCCCCceEEEECCEEccccccchHhhhccEEEEecCC--c
Confidence 699999999999999999999999996420 0012389999998754221 1112344678999998 5
Q ss_pred EecCCCcccCHHHHHHH------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCc
Q psy2946 186 NYGHLTPNANLELYQHC------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE 259 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DE 259 (455)
+|.. ++.+|+.+.... ....+..+.+.++..... ....+.....+|+||+||++||+|+..+|.++|+||
T Consensus 131 l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i---~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDE 206 (285)
T PRK14254 131 PFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV---KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDE 206 (285)
T ss_pred cCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchh---HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 6665 899998765432 111222333333221000 001244555677799999999999999999999999
Q ss_pred hh
Q psy2946 260 RL 261 (455)
Q Consensus 260 pl 261 (455)
|+
T Consensus 207 Pt 208 (285)
T PRK14254 207 PA 208 (285)
T ss_pred CC
Confidence 97
No 211
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=6e-18 Score=154.23 Aligned_cols=100 Identities=28% Similarity=0.336 Sum_probs=82.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|....... ...+...+|++|++ .++
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~--~~~ 85 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKPD---------------SGEIKVLGKDIKKEP-EEVKRRIGYLPEEP--SLY 85 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------CeEEEECCEEcccch-HhhhccEEEEecCC--ccc
Confidence 589999999999999999999999987655 899999987543221 23345578899988 677
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+..++.+|+. +|+||+||++||||++.+|.++|+|||+
T Consensus 86 ~~~tv~~~~~------------------------------------LS~G~~qrv~laral~~~p~illlDEPt 123 (173)
T cd03230 86 ENLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPELLILDEPT 123 (173)
T ss_pred cCCcHHHHhh------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 7778887753 3449999999999999999999999996
No 212
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=6.3e-18 Score=156.72 Aligned_cols=106 Identities=17% Similarity=0.187 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|.... .|.+|+|.++|.... .......+|++|.+ .++
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-------------~~~~G~i~~~g~~~~----~~~~~~i~~~~q~~--~~~ 91 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGRKTA-------------GVITGEILINGRPLD----KNFQRSTGYVEQQD--VHS 91 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCcC-------------CCcceEEEECCEehH----HHhhhceEEecccC--ccc
Confidence 58999999999999999999999997421 133899999887543 22334578889987 677
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...|+.+|+.+.... . .+|+|++||++||+|+..+|.++|+|||+
T Consensus 92 ~~~tv~~~l~~~~~~-----~------------------------~LSgGe~qrv~la~al~~~p~vlllDEP~ 136 (192)
T cd03232 92 PNLTVREALRFSALL-----R------------------------GLSVEQRKRLTIGVELAAKPSILFLDEPT 136 (192)
T ss_pred cCCcHHHHHHHHHHH-----h------------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCC
Confidence 778999988753210 0 23449999999999999999999999997
No 213
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.70 E-value=3e-18 Score=156.88 Aligned_cols=101 Identities=27% Similarity=0.287 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|...... ....+...+|++|++ .++
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---------------~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~--~~~ 87 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---------------QGEITLDGVPVSDL-EKALSSLISVLNQRP--YLF 87 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCC---------------CCEEEECCEEHHHH-HHHHHhhEEEEccCC--eee
Confidence 689999999999999999999999997655 89999999754322 222344578889988 566
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
. .|+.+|+ ...+|+||+||++||||+..+|.++|+|||+
T Consensus 88 ~-~tv~~~i----------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~ 126 (178)
T cd03247 88 D-TTLRNNL----------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPT 126 (178)
T ss_pred c-ccHHHhh----------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 4 5777765 1123449999999999999999999999997
No 214
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.7e-18 Score=167.25 Aligned_cols=139 Identities=14% Similarity=0.068 Sum_probs=93.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc--cccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+|+|+|+..+. .. ...+|+|.++|...... .....+..++|++|++ .
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~~-------~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~--~ 95 (252)
T PRK14272 28 QRGTVNALIGPSGCGKTTFLRAINRMHDLT---PG-------ARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKP--N 95 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCC---cC-------CCCceeEEECCEEcccCccCHHHhhceeEEEeccC--c
Confidence 589999999999999999999999986542 00 01279999998754321 1112344578999998 7
Q ss_pred EecCCCcccCHHHHHHHH----H----HHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV----E----RLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~----~----~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
++...|+.+|+.+..... . +.+....+.++.... . .-..+.+...+|+||+||++||+++..+|.++|+
T Consensus 96 ~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--l-~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 172 (252)
T PRK14272 96 PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE--V-KDRLKTPATGLSGGQQQRLCIARALAVEPEILLM 172 (252)
T ss_pred cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh--h-hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888889999997643221 1 111111112211100 0 0112444555677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 173 DEP~ 176 (252)
T PRK14272 173 DEPT 176 (252)
T ss_pred eCCC
Confidence 9997
No 215
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=2e-18 Score=171.13 Aligned_cols=132 Identities=14% Similarity=0.035 Sum_probs=93.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc---------------------
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--------------------- 166 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--------------------- 166 (455)
.+|++++|+|+||||||||+|+|+|++.++ +|+|.++|......
T Consensus 31 ~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---------------~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (305)
T PRK13651 31 NQGEFIAIIGQTGSGKTTFIEHLNALLLPD---------------TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFK 95 (305)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCC---------------CcEEEEeceeccccccccccccccccccccccccc
Confidence 589999999999999999999999998766 77777766432100
Q ss_pred ---cccccccCCCCcccCceEEEecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCC
Q psy2946 167 ---IERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGD 236 (455)
Q Consensus 167 ---~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~ 236 (455)
.....+..++|++|+|...++. .|+.+|+.+.... ..+.+..+.+.++.. ....+.+...+|+
T Consensus 96 ~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~------~~~~~~~~~~LSg 168 (305)
T PRK13651 96 KIKKIKEIRRRVGVVFQFAEYQLFE-QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD------ESYLQRSPFELSG 168 (305)
T ss_pred ccchHHHHHhceEEEeeCccccccc-ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC------hhhhhCChhhCCH
Confidence 0012345679999986434554 5999999875432 122234444444332 1123455566777
Q ss_pred cHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 237 GFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 237 G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
||+||++||++|+.+|.++|+|||+
T Consensus 169 GqkqrvalA~aL~~~P~lLlLDEPt 193 (305)
T PRK13651 169 GQKRRVALAGILAMEPDFLVFDEPT 193 (305)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 9999999999999999999999996
No 216
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.69 E-value=4.5e-18 Score=182.86 Aligned_cols=163 Identities=17% Similarity=0.216 Sum_probs=110.4
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.|++++ .++.|..++.+.+ .|++..+ ++|++++|+|+||||||||+++|+|+..+.
T Consensus 313 ~I~~~~--v~~~y~~~~~~~l--~~i~~~i-----------~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~--------- 368 (569)
T PRK10789 313 ELDVNI--RQFTYPQTDHPAL--ENVNFTL-----------KPGQMLGICGPTGSGKSTLLSLIQRHFDVS--------- 368 (569)
T ss_pred cEEEEE--EEEECCCCCCccc--cCeeEEE-----------CCCCEEEEECCCCCCHHHHHHHHhcccCCC---------
Confidence 466664 6677754333333 2333322 689999999999999999999999997655
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHH-HHHHHHHHHHHhhccCCC----CC
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQH-CVERLWKSVDERMNKDSK----TN 221 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~-~~~~l~~~~~~~~~~~~~----~~ 221 (455)
+|+|.++|..........++..++|++|++ ++|.. |+++|+.++.. ...+......+..+.... ..
T Consensus 369 ------~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~--~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~ 439 (569)
T PRK10789 369 ------EGDIRFHDIPLTKLQLDSWRSRLAVVSQTP--FLFSD-TVANNIALGRPDATQQEIEHVARLASVHDDILRLPQ 439 (569)
T ss_pred ------CCEEEECCEEHhhCCHHHHHhheEEEccCC--eeccc-cHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcC
Confidence 999999998655443344566789999999 77765 99999987532 111111122222211110 01
Q ss_pred cccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 222 SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 222 ~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
...-.++-.|..+|+||+||++||||+..+|+++|+|||+.
T Consensus 440 gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts 480 (569)
T PRK10789 440 GYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALS 480 (569)
T ss_pred cccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 11123344566778899999999999999999999999963
No 217
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.69 E-value=5.9e-18 Score=160.08 Aligned_cols=136 Identities=21% Similarity=0.119 Sum_probs=89.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+++|+|+..+. +|+|.++|...........+...+|++|++ .++
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~--~~~ 90 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---------------SGSVLLDGTDIRQLDPADLRRNIGYVPQDV--TLF 90 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCC---------------CCeEEECCEEhHHCCHHHHHhhEEEeCCCC--ccc
Confidence 689999999999999999999999997655 899999987543211112234578899988 566
Q ss_pred cCCCcccCHHHHHHH-HHHHHHHHHHhhccCCCCC----cccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHC-VERLWKSVDERMNKDSKTN----SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-~~~l~~~~~~~~~~~~~~~----~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
. .|+.+|+.++... .........+.++...... .....+......+|+||+||+.||+|+..+|+++|+|||+
T Consensus 91 ~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt 168 (220)
T cd03245 91 Y-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPT 168 (220)
T ss_pred c-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 5 4898887653211 0111122222222111000 0011122233356779999999999999999999999997
No 218
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.69 E-value=1.5e-18 Score=167.65 Aligned_cols=130 Identities=18% Similarity=0.129 Sum_probs=94.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc-------------ccccccC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI-------------ERPATIE 174 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~-------------~~~~~~~ 174 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|....... ....+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 88 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLEPID---------------EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNK 88 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEEccccccccccccccchhHHHHHhhC
Confidence 589999999999999999999999997665 899999887543210 0122446
Q ss_pred CCCcccCceEEEecCCCcccCHHHHHHH--------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHH
Q psy2946 175 DGFSQLAPIVYNYGHLTPNANLELYQHC--------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAK 246 (455)
Q Consensus 175 ~~~~~q~p~~~~~g~~sv~~n~~~~~~~--------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~ 246 (455)
++|++|++ .++...|+.+|+.+.... ....+..+.+.++... ..+.....+|+||+||++||+
T Consensus 89 i~~v~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 89 IGMVFQSF--NLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD-------KADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred eEEEecCc--ccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-------HhhcChhhcCHHHHHHHHHHH
Confidence 78999988 788888999998764211 1112233333333211 223344556779999999999
Q ss_pred HcCCCEEEEecCchh
Q psy2946 247 SLRVDNILVLDQERL 261 (455)
Q Consensus 247 al~~~~~vll~DEpl 261 (455)
|+..+|.++|+|||+
T Consensus 160 al~~~p~llllDEP~ 174 (252)
T TIGR03005 160 ALAMRPKVMLFDEVT 174 (252)
T ss_pred HHHcCCCEEEEeCCc
Confidence 999999999999997
No 219
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.3e-18 Score=182.92 Aligned_cols=130 Identities=18% Similarity=0.131 Sum_probs=94.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc-ccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER-PATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~-~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|......... ..+..++|++|++ .+
T Consensus 29 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---------------~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~--~~ 91 (510)
T PRK09700 29 YPGEIHALLGENGAGKSTLMKVLSGIHEPT---------------KGTITINNINYNKLDHKLAAQLGIGIIYQEL--SV 91 (510)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCcCCC---------------ccEEEECCEECCCCCHHHHHHCCeEEEeecc--cc
Confidence 699999999999999999999999997666 89999998754321111 1223578999988 67
Q ss_pred ecCCCcccCHHHHHH--------------HHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCE
Q psy2946 187 YGHLTPNANLELYQH--------------CVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDN 252 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~--------------~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~ 252 (455)
+..+|+.+|+.+... .....+..+.+.++... ..|.+...+|+||+||++||+||..+|
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~~~LSgG~~qrv~ia~al~~~p 164 (510)
T PRK09700 92 IDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-------DLDEKVANLSISHKQMLEIAKTLMLDA 164 (510)
T ss_pred cCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-------CcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 888899999875321 01122233334433321 124444566779999999999999999
Q ss_pred EEEecCchh
Q psy2946 253 ILVLDQERL 261 (455)
Q Consensus 253 ~vll~DEpl 261 (455)
.++|+|||+
T Consensus 165 ~lllLDEPt 173 (510)
T PRK09700 165 KVIIMDEPT 173 (510)
T ss_pred CEEEEeCCC
Confidence 999999995
No 220
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=5e-18 Score=161.61 Aligned_cols=136 Identities=18% Similarity=0.209 Sum_probs=90.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..+. +|+|.++|...........+...+|++|++ .++
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~--~~~ 89 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFYDPQ---------------KGQILIDGIDIRDISRKSLRSMIGVVLQDT--FLF 89 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCC---------------CCEEEECCEeHHHcCHHHHhhhEEEecCCc--hhh
Confidence 689999999999999999999999997666 899999987543222222344578999988 666
Q ss_pred cCCCcccCHHHHHHHH-HHHHHHHHHhhccCCCCC----cccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCV-ERLWKSVDERMNKDSKTN----SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-~~l~~~~~~~~~~~~~~~----~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.. |+.+|+.++.... ........+.+....... ......+.....+|+||+||++||+++..+|+++|+|||+
T Consensus 90 ~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~ 167 (229)
T cd03254 90 SG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEAT 167 (229)
T ss_pred hh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 65 8888887652110 011111111111100000 0001123334556779999999999999999999999997
No 221
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.2e-18 Score=168.41 Aligned_cols=138 Identities=13% Similarity=0.068 Sum_probs=91.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc--cccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|++... . ..|.+|+|.++|...... ....++..++|++|++ .
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~-------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~--~ 115 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMVELV---P-------SVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKP--N 115 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhccCC---C-------CCCCceeEEECCEEcccccccHHHHhhhEEEEecCC--c
Confidence 799999999999999999999999987511 0 012389999999754211 1112344578999998 6
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
+|.. |+.+|+.+..... ...+....+.+.... .. ....+.+...+|+|++||++||++|..+|.++|+
T Consensus 116 ~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~l-~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllL 191 (271)
T PRK14238 116 PFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD--EL-KDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILM 191 (271)
T ss_pred cccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc--hH-HHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 6664 9999987643211 111111111111100 00 0112445556677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 192 DEPt 195 (271)
T PRK14238 192 DEPT 195 (271)
T ss_pred eCCC
Confidence 9997
No 222
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.9e-18 Score=166.88 Aligned_cols=138 Identities=16% Similarity=0.107 Sum_probs=93.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc--ccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI--ERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~--~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+..+. .. .+.+|+|.++|....... ....+...+|++|++ .
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~-------~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~--~ 95 (251)
T PRK14249 28 PERQITAIIGPSGCGKSTLLRALNRMNDIV---SG-------ARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP--N 95 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCcc---cc-------CCcccEEEECCEEccccccChHHhhceEEEEecCC--c
Confidence 689999999999999999999999987654 11 122689999887543211 112345688999998 6
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
++.. |+.+|+.+..... .+.++...+.++.... . .-..+.....+|+||+||++||||+..+|+++|+
T Consensus 96 ~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--l-~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllL 171 (251)
T PRK14249 96 PFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE--V-KDNLHKSGLALSGGQQQRLCIARVLAIEPEVILM 171 (251)
T ss_pred cCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchh--h-hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6664 8999998654321 1111222222221100 0 0123445556677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 172 DEPt 175 (251)
T PRK14249 172 DEPC 175 (251)
T ss_pred eCCC
Confidence 9997
No 223
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.5e-18 Score=167.40 Aligned_cols=138 Identities=15% Similarity=0.112 Sum_probs=92.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc--cccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+..+. | -.+.+|+|.++|...... .....+..++|++|++ .
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~------~----~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~--~ 94 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRMNDLI------P----SVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQP--N 94 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccccc------C----CCCCceEEEECCEEccccccchHHHhccEEEEecCC--c
Confidence 589999999999999999999999985421 0 002379999999754321 1112344578999988 6
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
++. .|+.+|+.+..... .+.+....+.++.... . ....+.+...+|+||+||++||||+..+|.++|+
T Consensus 95 ~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--l-~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 170 (250)
T PRK14240 95 PFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDE--V-KDRLKKSALGLSGGQQQRLCIARALAVEPEVLLM 170 (250)
T ss_pred cCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh--h-HHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 666 79999998754221 1112222222221100 0 0112445556677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 171 DEP~ 174 (250)
T PRK14240 171 DEPT 174 (250)
T ss_pred eCCC
Confidence 9997
No 224
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.69 E-value=7.1e-18 Score=185.46 Aligned_cols=162 Identities=19% Similarity=0.175 Sum_probs=111.5
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.|++++ ..+.|..++.+.++ |++..+ ++|++++|+|+||||||||+|+|+|+..+.
T Consensus 455 ~i~~~~--vsf~y~~~~~~il~--~i~l~i-----------~~G~~vaivG~sGsGKSTL~~ll~g~~~p~--------- 510 (694)
T TIGR01846 455 AITFEN--IRFRYAPDSPEVLS--NLNLDI-----------KPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ--------- 510 (694)
T ss_pred eEEEEE--EEEEcCCCCccccc--cceEEE-----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------
Confidence 477775 67777544333332 333221 689999999999999999999999996555
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHH-HHHHHHHHHHHhhccCC----CCC
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQH-CVERLWKSVDERMNKDS----KTN 221 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~-~~~~l~~~~~~~~~~~~----~~~ 221 (455)
+|+|.++|........+.++..++|++|++ ++|.. |++||+.+... ...+......+..+..+ ...
T Consensus 511 ------~G~I~idg~~i~~~~~~~~r~~i~~v~q~~--~lf~~-ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~ 581 (694)
T TIGR01846 511 ------HGQVLVDGVDLAIADPAWLRRQMGVVLQEN--VLFSR-SIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQ 581 (694)
T ss_pred ------CceEEECCEehhhCCHHHHHHhCeEEccCC--eehhh-hHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcC
Confidence 999999999766555555667789999999 77765 99999987431 11111111111111110 001
Q ss_pred cccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 222 SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 222 ~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.....+.-.|..+|+||+||++||||+..+|+++|+|||+
T Consensus 582 gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpt 621 (694)
T TIGR01846 582 GYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEAT 621 (694)
T ss_pred ccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 1122344456778889999999999999999999999997
No 225
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.69 E-value=1.1e-18 Score=185.17 Aligned_cols=130 Identities=14% Similarity=0.128 Sum_probs=95.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc-cccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP-ATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~-~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|.......... ....++|++|++ .+
T Consensus 35 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~--~~ 97 (510)
T PRK15439 35 HAGEVHALLGGNGAGKSTLMKIIAGIVPPD---------------SGTLEIGGNPCARLTPAKAHQLGIYLVPQEP--LL 97 (510)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEECCCCCHHHHHhCCEEEEeccC--cc
Confidence 689999999999999999999999997666 899999987542211111 123478999998 78
Q ss_pred ecCCCcccCHHHHHHH---HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 187 YGHLTPNANLELYQHC---VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~---~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+..+|+.+|+.+.... ..+.+..+.+.++... ..+.+...+|+||+||++||+||..+|.++|+|||+
T Consensus 98 ~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt 168 (510)
T PRK15439 98 FPNLSVKENILFGLPKRQASMQKMKQLLAALGCQL-------DLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT 168 (510)
T ss_pred CCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCc-------cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 8889999998765321 1222333444443321 234455566779999999999999999999999995
No 226
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.69 E-value=2.1e-17 Score=157.58 Aligned_cols=125 Identities=18% Similarity=0.122 Sum_probs=92.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|...... ....+|++|.+ .++
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~~-----~~~~~~v~q~~--~l~ 66 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQPT---------------SGGVILEGKQITEP-----GPDRMVVFQNY--SLL 66 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCEECCCC-----ChhheEEecCc--ccC
Confidence 589999999999999999999999997665 89999998753221 11247888988 788
Q ss_pred cCCCcccCHHHHHHH---------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecC
Q psy2946 188 GHLTPNANLELYQHC---------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258 (455)
Q Consensus 188 g~~sv~~n~~~~~~~---------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~D 258 (455)
..+|+.+|+.+.... ....+..+.+.++... ..+.....+|+||+||++||+++..+|.++|+|
T Consensus 67 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 139 (230)
T TIGR01184 67 PWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTE-------AADKRPGQLSGGMKQRVAIARALSIRPKVLLLD 139 (230)
T ss_pred CCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHH-------HHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 888999998875321 0112233333333221 123444556779999999999999999999999
Q ss_pred chh
Q psy2946 259 ERL 261 (455)
Q Consensus 259 Epl 261 (455)
||+
T Consensus 140 EPt 142 (230)
T TIGR01184 140 EPF 142 (230)
T ss_pred CCC
Confidence 996
No 227
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.69 E-value=1.6e-18 Score=163.85 Aligned_cols=136 Identities=18% Similarity=0.231 Sum_probs=90.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc----ccccccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI----ERPATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~----~~~~~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|....... ....+..++|++|.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~- 88 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEMQTL---------------EGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKP- 88 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCC---------------CCeEEECCcccccccccccchhhcceEEEEcCCC-
Confidence 689999999999999999999999997655 899988887432211 111234578899998
Q ss_pred EEEecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCC----cccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCc
Q psy2946 184 VYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTN----SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE 259 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~----~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DE 259 (455)
.++ ..|+.+|+.+.............+.++...... ......+......|+||+||++||+++..+|.++|+||
T Consensus 89 -~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE 166 (218)
T cd03290 89 -WLL-NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDD 166 (218)
T ss_pred -ccc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 566 568999987643211111112222221110000 00011233444567799999999999999999999999
Q ss_pred hh
Q psy2946 260 RL 261 (455)
Q Consensus 260 pl 261 (455)
|+
T Consensus 167 Pt 168 (218)
T cd03290 167 PF 168 (218)
T ss_pred Cc
Confidence 97
No 228
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=5.8e-18 Score=155.04 Aligned_cols=103 Identities=24% Similarity=0.234 Sum_probs=83.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc--ccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI--ERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~--~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|...++ +|+|.++|....... .......++|++|.+ .
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~--~ 86 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEPD---------------SGSILIDGEDLTDLEDELPPLRRRIGMVFQDF--A 86 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEEccccchhHHHHhhcEEEEecCC--c
Confidence 589999999999999999999999987665 899999997543221 122344578888888 6
Q ss_pred EecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 186 NYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
++...|+.+|+.+. +|+||+||++||+|+..+|.++|+|||+
T Consensus 87 ~~~~~t~~~~l~~~----------------------------------lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 87 LFPHLTVLENIALG----------------------------------LSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred cCCCCCHHHheeec----------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 67677887776543 3449999999999999999999999996
No 229
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.69 E-value=1.1e-18 Score=165.51 Aligned_cols=131 Identities=17% Similarity=0.075 Sum_probs=90.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCC--Ce--eecccccc----ccccCCCCcc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVP--GT--IGALVIER----PATIEDGFSQ 179 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~--G~--~~~~~~~~----~~~~~~~~~~ 179 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++ |. ........ ......+|++
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---------------~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~ 96 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANYLPD---------------SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVS 96 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CCeEEEecCCCccchhhcCHHHHHHHHhcceEEEe
Confidence 689999999999999999999999997665 7888876 32 11111011 1123578999
Q ss_pred cCceEEEecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCE
Q psy2946 180 LAPIVYNYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDN 252 (455)
Q Consensus 180 q~p~~~~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~ 252 (455)
|++ .++..+++.+|+.+.... ..+.+..+.+.++.. ....+.+...+|+|++||++||+|+..+|
T Consensus 97 q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~~LS~G~~qrl~laral~~~p 168 (224)
T TIGR02324 97 QFL--RVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIP------ERLWHLPPATFSGGEQQRVNIARGFIADY 168 (224)
T ss_pred ccc--ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc------hhhhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 998 788888999998764321 111222233333221 11224445566779999999999999999
Q ss_pred EEEecCchh
Q psy2946 253 ILVLDQERL 261 (455)
Q Consensus 253 ~vll~DEpl 261 (455)
.++|+|||+
T Consensus 169 ~llllDEPt 177 (224)
T TIGR02324 169 PILLLDEPT 177 (224)
T ss_pred CEEEEcCCc
Confidence 999999996
No 230
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.1e-18 Score=168.92 Aligned_cols=138 Identities=14% Similarity=0.085 Sum_probs=92.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc-ccccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI-ERPATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~-~~~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+++|+|+..+. +.+ |.+|+|.++|....... ....+..++|++|++ .+
T Consensus 45 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~---~~~-------~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~--~l 112 (276)
T PRK14271 45 PARAVTSLMGPTGSGKTTFLRTLNRMNDKV---SGY-------RYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRP--NP 112 (276)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCcC---CCC-------CCceEEEECCEEccccchhHHHhhheEEeccCC--cc
Confidence 689999999999999999999999987542 111 23899999987543221 112344678999988 66
Q ss_pred ecCCCcccCHHHHHHHH-----HH---HHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecC
Q psy2946 187 YGHLTPNANLELYQHCV-----ER---LWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~~-----~~---l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~D 258 (455)
|. .|+.+|+.+..... .. .+....+.++..... .-..+.....+|+||+||++|||+|..+|.++|+|
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLD 188 (276)
T PRK14271 113 FP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV---KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLD 188 (276)
T ss_pred CC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh---hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 66 69999987643211 11 112222333221100 00123444556779999999999999999999999
Q ss_pred chh
Q psy2946 259 ERL 261 (455)
Q Consensus 259 Epl 261 (455)
||+
T Consensus 189 EPt 191 (276)
T PRK14271 189 EPT 191 (276)
T ss_pred CCc
Confidence 997
No 231
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.69 E-value=2e-18 Score=150.82 Aligned_cols=128 Identities=23% Similarity=0.195 Sum_probs=94.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|...+. +|.|.++|...........+...++++|++ .++
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---------------~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~ 71 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLPPD---------------SGSILINGKDISDIDIEELRRRIGYVPQDP--QLF 71 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSHES---------------EEEEEETTEEGTTSHHHHHHHTEEEEESSH--CHH
T ss_pred cCCCEEEEEccCCCccccceeeeccccccc---------------cccccccccccccccccccccccccccccc--ccc
Confidence 589999999999999999999999998776 899999988765533334455678888887 788
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
..+++.+| ......+.+.+.+..... ....++.....+|.|++||++||+|+..+|.++|+|||+
T Consensus 72 ~~~tv~~~------~~~~~~~~~l~~l~~~~~---~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 72 PGLTVREN------ESDERIEEVLKKLGLEDL---LDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp TTSBHHHH------HHHHHHHHHHHHTTHGGG---TGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred cccccccc------cccccccccccccccccc---cccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 88888877 112223334444333221 111223333456679999999999999999999999997
No 232
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=5.5e-19 Score=173.42 Aligned_cols=132 Identities=18% Similarity=0.143 Sum_probs=93.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc----ccccccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI----ERPATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~----~~~~~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|....... ....+..++|++|++.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---------------~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~ 95 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---------------QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPE 95 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEEccccccccCHHHHHhheEEEeeChh
Confidence 689999999999999999999999997666 899999987543211 1123345789998863
Q ss_pred EEEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 184 VYNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
..++. .|+.+|+.+..... ...++.+.+.++.. ....+.....+|+||+||++||+||..+|.++|
T Consensus 96 ~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 168 (280)
T PRK13649 96 SQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGIS------ESLFEKNPFELSGGQMRRVAIAGILAMEPKILV 168 (280)
T ss_pred hhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCC------hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 23444 59999987653321 11222333333321 112244555667799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 169 LDEPt 173 (280)
T PRK13649 169 LDEPT 173 (280)
T ss_pred EeCCc
Confidence 99996
No 233
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.69 E-value=1.8e-18 Score=167.15 Aligned_cols=133 Identities=20% Similarity=0.094 Sum_probs=89.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCee-----ecccccc----ccccCCCCc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTI-----GALVIER----PATIEDGFS 178 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~-----~~~~~~~----~~~~~~~~~ 178 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|.. ....... .....++|+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ 91 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRLAPD---------------HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFV 91 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------CcEEEEecccccccccccCCHHHHHHhhhcceEEE
Confidence 689999999999999999999999997665 8889888753 2111111 112347888
Q ss_pred ccCceEEEecCCCcccCHHHHHHH--------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCC
Q psy2946 179 QLAPIVYNYGHLTPNANLELYQHC--------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRV 250 (455)
Q Consensus 179 ~q~p~~~~~g~~sv~~n~~~~~~~--------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~ 250 (455)
+|++...++...++.+|+...... ....+..+.+.++.. ....+.....+|+||+||++||||+..
T Consensus 92 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~------~~~~~~~~~~LSgG~~qrv~laral~~ 165 (253)
T TIGR02323 92 HQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEID------PTRIDDLPRAFSGGMQQRLQIARNLVT 165 (253)
T ss_pred EeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCC------hhhhhcCchhcCHHHHHHHHHHHHHhc
Confidence 888733345555666776532110 112223333333321 112344555667799999999999999
Q ss_pred CEEEEecCchh
Q psy2946 251 DNILVLDQERL 261 (455)
Q Consensus 251 ~~~vll~DEpl 261 (455)
+|.++|+|||+
T Consensus 166 ~p~vlllDEP~ 176 (253)
T TIGR02323 166 RPRLVFMDEPT 176 (253)
T ss_pred CCCEEEEcCCC
Confidence 99999999996
No 234
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2e-18 Score=168.84 Aligned_cols=138 Identities=14% Similarity=0.095 Sum_probs=92.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc--cccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+..+.+ .+|.+|+|.++|...... ....++..++|++|++ .
T Consensus 44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~----------~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~--~ 111 (274)
T PRK14265 44 PAKKIIAFIGPSGCGKSTLLRCFNRMNDLIP----------GAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRP--N 111 (274)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccccc----------CCCcCceEEECCEecccccchhHHHhhcEEEEccCC--c
Confidence 6999999999999999999999999864310 012379999998754221 1112345678999988 5
Q ss_pred EecCCCcccCHHHHHHH------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCc
Q psy2946 186 NYGHLTPNANLELYQHC------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE 259 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DE 259 (455)
+|.. ++.+|+.+.... .........+.++.... . ....+.+...+|+||+||++|||||..+|+++|+||
T Consensus 112 l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--l-~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDE 187 (274)
T PRK14265 112 PFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEE--V-KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDE 187 (274)
T ss_pred cccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchh--h-HHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 6654 899998764321 11111222222221100 0 012345556677899999999999999999999999
Q ss_pred hh
Q psy2946 260 RL 261 (455)
Q Consensus 260 pl 261 (455)
|+
T Consensus 188 Pt 189 (274)
T PRK14265 188 PC 189 (274)
T ss_pred Cc
Confidence 97
No 235
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.69 E-value=8e-18 Score=181.36 Aligned_cols=163 Identities=16% Similarity=0.217 Sum_probs=110.6
Q ss_pred EEEEEeeccceeeeecC-CcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccE
Q psy2946 67 SITMKNARKNMTYVSKE-TPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPI 145 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~-t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~ 145 (455)
.|++++ ..+.|..++ .+.++ |+++.+ ++|++++|+|+||||||||+|+|+|+..+.
T Consensus 337 ~i~~~~--v~f~y~~~~~~~iL~--~inl~i-----------~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~-------- 393 (576)
T TIGR02204 337 EIEFEQ--VNFAYPARPDQPALD--GLNLTV-----------RPGETVALVGPSGAGKSTLFQLLLRFYDPQ-------- 393 (576)
T ss_pred eEEEEE--EEEECCCCCCCcccc--ceeEEe-----------cCCCEEEEECCCCCCHHHHHHHHHhccCCC--------
Confidence 577775 777775432 33332 333222 699999999999999999999999997655
Q ss_pred EEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHH-HHHHHHHHHHhhccCC----CC
Q psy2946 146 FVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHC-VERLWKSVDERMNKDS----KT 220 (455)
Q Consensus 146 ~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~-~~~l~~~~~~~~~~~~----~~ 220 (455)
+|+|.++|..........++..++|++|+| ++|.. |+++|+.+.... ..+......+..+..+ ..
T Consensus 394 -------~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~--~lf~~-Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~ 463 (576)
T TIGR02204 394 -------SGRILLDGVDLRQLDPAELRARMALVPQDP--VLFAA-SVMENIRYGRPDATDEEVEAAARAAHAHEFISALP 463 (576)
T ss_pred -------CCEEEECCEEHHhcCHHHHHHhceEEccCC--ccccc-cHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCC
Confidence 999999998765544445566789999999 66655 999999874311 1111111222211110 00
Q ss_pred CcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 221 NSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 221 ~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
......+...|-.+|+||+||+++|||+..+++++|+|||+.
T Consensus 464 ~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts 505 (576)
T TIGR02204 464 EGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATS 505 (576)
T ss_pred CCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCccc
Confidence 011122344566678899999999999999999999999973
No 236
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.6e-18 Score=165.88 Aligned_cols=138 Identities=16% Similarity=0.084 Sum_probs=92.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc--ccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI--ERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~--~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+..+. . ..|.+|+|.++|....... ....+...+|++|++ .
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p-------~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~--~ 95 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMNDDI---E-------NIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQP--T 95 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccccc---c-------CCCcceEEEECCEEcccccchHHHhhccEEEEecCC--c
Confidence 689999999999999999999999986421 0 0023799999987532211 112344578899988 5
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
+|. .|+.+|+.+..... ......+.+.++..... ....+.....+|+||+||++||||+..+|+++|+
T Consensus 96 ~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~LS~Gq~qr~~laral~~~p~llll 171 (251)
T PRK14251 96 PFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLL 171 (251)
T ss_pred cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 665 69999997653221 11222233333221000 0112445556677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 172 DEP~ 175 (251)
T PRK14251 172 DEPT 175 (251)
T ss_pred cCCC
Confidence 9997
No 237
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.69 E-value=4.1e-18 Score=198.72 Aligned_cols=174 Identities=18% Similarity=0.167 Sum_probs=116.2
Q ss_pred EEEEEeeccceeeeec-CCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccE
Q psy2946 67 SITMKNARKNMTYVSK-ETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPI 145 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~-~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~ 145 (455)
.|++++ +.+.|... +.+.+ .|+++.. ++|++++|+|++||||||++++|+++..+. .....
T Consensus 1165 ~I~f~n--VsF~Y~~~~~~~vL--~~lsl~i-----------~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~---~~~~~ 1226 (1466)
T PTZ00265 1165 KIEIMD--VNFRYISRPNVPIY--KDLTFSC-----------DSKKTTAIVGETGSGKSTVMSLLMRFYDLK---NDHHI 1226 (1466)
T ss_pred eEEEEE--EEEECCCCCCCccc--cCeeEEE-----------cCCCEEEEECCCCCCHHHHHHHHHHhCCCc---ccccc
Confidence 478885 88888653 23433 3333322 699999999999999999999999997652 00000
Q ss_pred E--Eec----------------------------------------CCCCCcCCCCCeeeccccccccccCCCCcccCce
Q psy2946 146 F--VDL----------------------------------------DVGQGHVSVPGTIGALVIERPATIEDGFSQLAPI 183 (455)
Q Consensus 146 ~--vDl----------------------------------------DpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~ 183 (455)
. -+. -|.+|+|.++|........+.++..++|++|+|
T Consensus 1227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep- 1305 (1466)
T PTZ00265 1227 VFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEP- 1305 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCC-
Confidence 0 000 035899999999887766667788899999999
Q ss_pred EEEecCCCcccCHHHHHH-HHHHHHHHHHHhhccCCCC----CcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecC
Q psy2946 184 VYNYGHLTPNANLELYQH-CVERLWKSVDERMNKDSKT----NSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~-~~~~l~~~~~~~~~~~~~~----~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~D 258 (455)
++|. .|++||+.++.. ...+......+..+..+.. ....-.+.-.|-.+|+||+||++|||||..+|+|+|+|
T Consensus 1306 -~LF~-gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1306 -MLFN-MSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred -cccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 7775 499999999732 1111112222221111100 01111223346667889999999999999999999999
Q ss_pred chh
Q psy2946 259 ERL 261 (455)
Q Consensus 259 Epl 261 (455)
|++
T Consensus 1384 EaT 1386 (1466)
T PTZ00265 1384 EAT 1386 (1466)
T ss_pred Ccc
Confidence 996
No 238
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.3e-17 Score=167.07 Aligned_cols=138 Identities=15% Similarity=0.133 Sum_probs=96.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc--cccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+.... . -.|.+|+|.++|...... ....++...+|++|.| .
T Consensus 106 ~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~---~-------~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~--~ 173 (329)
T PRK14257 106 KRNKVTAFIGPSGCGKSTFLRNLNQLNDLI---E-------GTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP--T 173 (329)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccccc---C-------CCCCceEEEECCEEccccccchHhhhccEEEEecCC--c
Confidence 699999999999999999999999986421 0 113489999999865321 1123455689999998 5
Q ss_pred EecCCCcccCHHHHHHHH----HHH----HHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV----ERL----WKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~----~~l----~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
+|. .|+++|+.+..... .+. .....+.+..... ....++..+..+|+||+||++||||+..+|+|+|+
T Consensus 174 ~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~---l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLL 249 (329)
T PRK14257 174 PFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDE---VKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLM 249 (329)
T ss_pred cCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcch---hhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 564 69999998654221 111 2222233221110 01234566777888999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 250 DEPt 253 (329)
T PRK14257 250 DEPT 253 (329)
T ss_pred eCCc
Confidence 9997
No 239
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=3.3e-18 Score=166.76 Aligned_cols=138 Identities=14% Similarity=0.108 Sum_probs=92.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc--ccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI--ERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~--~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+|+|+|+..+. .. -|.+|+|.++|....... ....+..++|++|.+ .
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~~-------~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~--~ 111 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMNDTI---DI-------ARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRP--N 111 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCcc---CC-------CCcceEEEECCEEcccccCChHHHhcceEEEecCC--c
Confidence 699999999999999999999999986431 00 023899999987542210 112344678999987 5
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
+|. .|+.+|+.+..... ........+.++..... .-..+.+...+|+|++||++||||+..+|.++|+
T Consensus 112 ~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i---~~~~~~~~~~LS~G~~qrl~laral~~~p~lllL 187 (267)
T PRK14237 112 PFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV---KDDLHKSALTLSGGQQQRLCIARAIAVKPDILLM 187 (267)
T ss_pred ccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh---hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 665 49999998743221 11112222232221100 0123455556778999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 188 DEPt 191 (267)
T PRK14237 188 DEPA 191 (267)
T ss_pred eCCc
Confidence 9997
No 240
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.6e-18 Score=166.71 Aligned_cols=138 Identities=17% Similarity=0.112 Sum_probs=93.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc--cccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+|+|+|+..+. + + .+.+|+|.++|...... ........++|++|++ .
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---~--~-----~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~--~ 98 (259)
T PRK14260 31 YRNKVTAIIGPSGCGKSTFIKTLNRISELE---G--P-----VKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRP--N 98 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcc---c--C-----CccceEEEECCEeccccccchHhhhhheEEEeccc--c
Confidence 689999999999999999999999986532 0 0 00279999998754321 1112344678999998 6
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
+|. .|+.+|+.+..... ........+.++.... .....+.....+|+||+||++||||+..+|+++|+
T Consensus 99 l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 174 (259)
T PRK14260 99 PFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQE---VKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLM 174 (259)
T ss_pred cCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch---hhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 676 79999987643211 1122222333222110 00123455566778999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 175 DEPt 178 (259)
T PRK14260 175 DEPC 178 (259)
T ss_pred cCCC
Confidence 9997
No 241
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.69 E-value=6.6e-18 Score=161.02 Aligned_cols=137 Identities=15% Similarity=0.103 Sum_probs=93.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..+. .-+.+|+|.++|...... ......++|++|++...|+
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-----------~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~ 76 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLLPPG-----------LTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFN 76 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCc-----------cCccccEEEECCEechhh--hhhhheeEEEecCchhhcC
Confidence 689999999999999999999999997650 001289999999754322 1122357889998732366
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
..+|+.+|+.+..... ...+..+.+.++.... .-..+.+...+|+||+||++||||+..+|.++|+|||
T Consensus 77 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 77 PLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP----EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred cccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch----HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 6778888876543211 1122333333332210 0123445556677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 153 t 153 (230)
T TIGR02770 153 T 153 (230)
T ss_pred c
Confidence 7
No 242
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=3.1e-18 Score=166.37 Aligned_cols=138 Identities=16% Similarity=0.082 Sum_probs=94.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc--cccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|++.+. .. .+.+|+|.++|...... ....++..++|++|++ .
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~~-------~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~--~ 99 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRMNDLV---KG-------FRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP--N 99 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcccccc---cC-------CCCceEEEECCEeccccccchHhhhhceEEEecCC--c
Confidence 689999999999999999999999997541 00 02389999999854321 1112345578999998 5
Q ss_pred EecCCCcccCHHHHHHH------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCc
Q psy2946 186 NYGHLTPNANLELYQHC------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE 259 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DE 259 (455)
+| ..|+.+|+.+.... .......+.+.++..... ....+.....+|+|++||++||||+..+|.++|+||
T Consensus 100 ~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i---~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 175 (261)
T PRK14263 100 PF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEV---KDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDE 175 (261)
T ss_pred cc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhh---hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 66 58999999875431 112223333333321100 001234445567799999999999999999999999
Q ss_pred hh
Q psy2946 260 RL 261 (455)
Q Consensus 260 pl 261 (455)
|+
T Consensus 176 Pt 177 (261)
T PRK14263 176 PC 177 (261)
T ss_pred CC
Confidence 97
No 243
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.7e-18 Score=168.97 Aligned_cols=136 Identities=15% Similarity=0.070 Sum_probs=92.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh--cCCCCCCccEEEecCCCCCcCCCCCeeeccccc--cccccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV--RMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE--RPATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~--~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~--~~~~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+++|+|+.. +. .|.+|+|.++|........ ...+..++|++|++
T Consensus 63 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~------------~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~- 129 (286)
T PRK14275 63 LSKYVTAIIGPSGCGKSTFLRAINRMNDLIPS------------CHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP- 129 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccccCCC------------CCCceEEEECCEEhhhcccchHHhhhcEEEECCCC-
Confidence 6899999999999999999999999753 20 0138999999875432111 12345678999998
Q ss_pred EEEecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEE
Q psy2946 184 VYNYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILV 255 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vl 255 (455)
.+++. |+.+|+.+..... ...+..+.+.++.... .....+.....+|+||+||++||||+..+|.++
T Consensus 130 -~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~ll 204 (286)
T PRK14275 130 -NPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE---VSDRLDKNALGLSGGQQQRLCVARTLAVEPEIL 204 (286)
T ss_pred -CCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccc---hhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 66764 9999998754311 1112222233222100 001224455567779999999999999999999
Q ss_pred ecCchh
Q psy2946 256 LDQERL 261 (455)
Q Consensus 256 l~DEpl 261 (455)
|+|||+
T Consensus 205 lLDEPt 210 (286)
T PRK14275 205 LLDEPT 210 (286)
T ss_pred EEeCCC
Confidence 999997
No 244
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=3.3e-18 Score=165.31 Aligned_cols=139 Identities=15% Similarity=0.094 Sum_probs=93.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc--ccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI--ERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~--~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+..+.+ ..|.+|+|.++|....... ....+..++|++|++ .
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~----------~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~--~ 95 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRMHDLVP----------SARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKP--N 95 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcccCCC----------CCCCceEEEECCEEcccccCChHHhhccEEEEecCC--C
Confidence 5899999999999999999999999864110 0023799999987543211 112345678999998 7
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
++...|+.+|+.+..... .+......+.++..... .-..+.....+|+||+||++||||+..+|+++|+
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 172 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV---KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILM 172 (252)
T ss_pred CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh---hHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888889999997643211 11122222333221100 0012334455677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 173 DEP~ 176 (252)
T PRK14256 173 DEPA 176 (252)
T ss_pred cCCc
Confidence 9997
No 245
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.6e-18 Score=165.40 Aligned_cols=128 Identities=18% Similarity=0.176 Sum_probs=93.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|...+. +|+|.++|....... .....++|++|++ .+|
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---------------~G~i~~~g~~~~~~~--~~~~~i~~~~q~~--~~~ 84 (232)
T cd03300 24 KEGEFFTLLGPSGCGKTTLLRLIAGFETPT---------------SGEILLDGKDITNLP--PHKRPVNTVFQNY--ALF 84 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------ceEEEECCEEcCcCC--hhhcceEEEeccc--ccC
Confidence 589999999999999999999999997665 899999887443211 1234578999988 777
Q ss_pred cCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...|+.+|+.+.... .......+.+.++... ..+......|.|++||++||||+..+|+++|+|||
T Consensus 85 ~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP 157 (232)
T cd03300 85 PHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEG-------YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEP 157 (232)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 778999998764321 1122233334433321 12333345567999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 158 ~ 158 (232)
T cd03300 158 L 158 (232)
T ss_pred c
Confidence 6
No 246
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.8e-18 Score=167.75 Aligned_cols=139 Identities=12% Similarity=0.061 Sum_probs=92.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc--ccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI--ERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~--~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+..+. . .-|.+|+|.++|....... ....+...+|++|.+ .
T Consensus 49 ~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~---~-------~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~--~ 116 (272)
T PRK14236 49 PKNRVTAFIGPSGCGKSTLLRCFNRMNDLV---D-------NCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRP--N 116 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcCCCc---c-------CCCCceEEEECCEECcccccCHHHHhccEEEEecCC--c
Confidence 699999999999999999999999986521 0 0023899999987543210 112345678999988 6
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
+|.. |+.+|+.+..... .+......+.++..... . -..+.....+|+||+||++||||+..+|.++|+
T Consensus 117 l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~-~~~~~~~~~LS~Gq~qrv~laral~~~p~lllL 192 (272)
T PRK14236 117 PFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV--K-DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLL 192 (272)
T ss_pred cCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH--H-HHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 6665 9999987643211 11122222222211100 0 012344455677999999999999999999999
Q ss_pred Cchhh
Q psy2946 258 QERLY 262 (455)
Q Consensus 258 DEpl~ 262 (455)
|||+.
T Consensus 193 DEPt~ 197 (272)
T PRK14236 193 DEPTS 197 (272)
T ss_pred eCCcc
Confidence 99973
No 247
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.68 E-value=9.8e-19 Score=169.53 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=90.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|...........+..++|++|++ .+|
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~--~l~ 107 (257)
T cd03288 45 KPGQKVGICGRTGSGKSSLSLAFFRMVDIF---------------DGKIVIDGIDISKLPLHTLRSRLSIILQDP--ILF 107 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcccCCC---------------CCeEEECCEEhhhCCHHHHhhhEEEECCCC--ccc
Confidence 699999999999999999999999987655 899999997543322223345578999988 566
Q ss_pred cCCCcccCHHHHHH----HHHHHHH--HHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQH----CVERLWK--SVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~----~~~~l~~--~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.. |+.+|+..... ......+ .+.+.+.... ... ...++..+..+|+|++||++||||+..+|.++|+|||+
T Consensus 108 ~~-tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~l-~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 184 (257)
T cd03288 108 SG-SIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLP-GGL-DAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEAT 184 (257)
T ss_pred cc-HHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcc-ccc-CcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 54 78777654211 0111100 0111111000 011 12334455667889999999999999999999999997
No 248
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.68 E-value=3e-18 Score=165.83 Aligned_cols=137 Identities=15% Similarity=0.096 Sum_probs=91.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. ..+.+|+|.++|..... .......++|++|++...|.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-----------~~~~~G~i~~~g~~i~~--~~~~~~~i~~v~q~~~~~~~ 93 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGILPAG-----------VRQTAGRVLLDGKPVAP--CALRGRKIATIMQNPRSAFN 93 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----------CCCcCCEEEECCeeccc--cccccceEEEEecCCccccC
Confidence 689999999999999999999999997651 01138999998875421 11223457889998733344
Q ss_pred cCCCcccCHHHHHHHH-----HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCV-----ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-----~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...++.+|........ ...+..+.+.++.... ..+.+.....+|+||+||++||||+..+|.++|+|||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt 168 (254)
T PRK10418 94 PLHTMHTHARETCLALGKPADDATLTAALEAVGLENA----ARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPT 168 (254)
T ss_pred ccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh----hhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 5567766654432211 1223333344332210 00234455566779999999999999999999999997
No 249
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.68 E-value=1.5e-18 Score=164.95 Aligned_cols=131 Identities=19% Similarity=0.183 Sum_probs=90.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|..............++|++|++ .+|
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~--~l~ 100 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQPQ---------------GGQVLLDGKPISQYEHKYLHSKVSLVGQEP--VLF 100 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCC---------------CcEEEECCCchHHcCHHHHHhhEEEEeccc--HHH
Confidence 689999999999999999999999997666 899999887543221222334578899988 566
Q ss_pred cCCCcccCHHHHHHH--HHH---H-----HHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 188 GHLTPNANLELYQHC--VER---L-----WKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 188 g~~sv~~n~~~~~~~--~~~---l-----~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
. .|+.+|+.+.... ... . ...+.+.+.. ... ...+.....+|+|++||++||+++..+|.++|+
T Consensus 101 ~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~----gl~-~~~~~~~~~LSgG~~qrv~laral~~~p~llll 174 (226)
T cd03248 101 A-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELAS----GYD-TEVGEKGSQLSGGQKQRVAIARALIRNPQVLIL 174 (226)
T ss_pred h-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccc----ccc-chhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5 4898888653211 000 0 1111122110 111 123445566778999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 175 DEPt 178 (226)
T cd03248 175 DEAT 178 (226)
T ss_pred eCCc
Confidence 9997
No 250
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.68 E-value=1.2e-17 Score=167.42 Aligned_cols=138 Identities=13% Similarity=0.023 Sum_probs=96.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc---c-ccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP---A-TIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~---~-~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+++|+|+..+. . ..+|+|.++|.......... + ...++|++|++.
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~---~---------~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 107 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLLAAN---G---------RIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM 107 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCC---C---------CCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCch
Confidence 689999999999999999999999996542 0 11799999998654332221 1 236899999986
Q ss_pred EEEecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEE
Q psy2946 184 VYNYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILV 255 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vl 255 (455)
..+++.+++.+++....... ...+..+.+.++.... ...++..+..+|+||+||++||+||..+|.++
T Consensus 108 ~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~----~~~~~~~p~~LSgG~~QRv~IArAL~~~P~ll 183 (330)
T PRK09473 108 TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEA----RKRMKMYPHEFSGGMRQRVMIAMALLCRPKLL 183 (330)
T ss_pred hhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCh----HHHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 66788888888776533221 1122333333332210 01234455667889999999999999999999
Q ss_pred ecCchh
Q psy2946 256 LDQERL 261 (455)
Q Consensus 256 l~DEpl 261 (455)
|+|||+
T Consensus 184 ilDEPt 189 (330)
T PRK09473 184 IADEPT 189 (330)
T ss_pred EEeCCC
Confidence 999996
No 251
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=3.6e-18 Score=164.99 Aligned_cols=138 Identities=17% Similarity=0.103 Sum_probs=91.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc--ccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI--ERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~--~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+.... | -++.+|+|.++|....... .......++|++|++ .
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~------~----~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~--~ 96 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNRMNDLI------P----GVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQP--N 96 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccccC------C----CCCcccEEEEcCEEcccccccHHHhcCeEEEEECCC--c
Confidence 589999999999999999999999975311 0 0023799999997543211 112334678999988 5
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
++. .|+.+|+.+..... .+......+.++.... .....+.....+|+||+||++||+++..+|.++|+
T Consensus 97 ~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 172 (252)
T PRK14255 97 PFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE---VKDHLHESALSLSGGQQQRVCIARVLAVKPDVILL 172 (252)
T ss_pred cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccc---hhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 666 59999988753221 1111112222221100 00112445556677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 173 DEPt 176 (252)
T PRK14255 173 DEPT 176 (252)
T ss_pred cCCC
Confidence 9997
No 252
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.68 E-value=2.6e-18 Score=167.77 Aligned_cols=138 Identities=14% Similarity=-0.001 Sum_probs=90.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|++.+..+.+.. ..+|+|.++|...............+|++|++ .++
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~-------~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~--~~~ 95 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA-------RVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA--QPA 95 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCccccccc-------CCceEEEECCEEcccCCHHHHHhhcEEecccC--CCC
Confidence 689999999999999999999999986432000000 00688888887543221112233468889887 444
Q ss_pred cCCCcccCHHHHHHH-----------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcC-------
Q psy2946 188 GHLTPNANLELYQHC-----------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLR------- 249 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-----------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~------- 249 (455)
...|+.+|+.+.... ....+..+.+.++.. -..+.+...+|+||+||++||+++.
T Consensus 96 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LSgG~~qrv~laral~~~~~~~~ 168 (272)
T PRK13547 96 FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-------ALVGRDVTTLSGGELARVQFARVLAQLWPPHD 168 (272)
T ss_pred CCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-------hhhcCCcccCCHHHHHHHHHHHHHhccccccc
Confidence 457899998763210 111222333333221 1234555667789999999999999
Q ss_pred --CCEEEEecCchh
Q psy2946 250 --VDNILVLDQERL 261 (455)
Q Consensus 250 --~~~~vll~DEpl 261 (455)
.+|.++|+|||+
T Consensus 169 ~~~~p~lllLDEPt 182 (272)
T PRK13547 169 AAQPPRYLLLDEPT 182 (272)
T ss_pred cCCCCCEEEEcCcc
Confidence 599999999996
No 253
>PLN03232 ABC transporter C family member; Provisional
Probab=99.68 E-value=4.9e-18 Score=199.42 Aligned_cols=163 Identities=14% Similarity=0.107 Sum_probs=116.2
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.|++++ ..+.|..+..+.+ .|+++.. ++|++++|+|++|||||||+++|.++..+.
T Consensus 1234 ~I~f~n--Vsf~Y~~~~~~vL--~~isl~I-----------~~GekvaIVG~SGSGKSTL~~lL~rl~~p~--------- 1289 (1495)
T PLN03232 1234 SIKFED--VHLRYRPGLPPVL--HGLSFFV-----------SPSEKVGVVGRTGAGKSSMLNALFRIVELE--------- 1289 (1495)
T ss_pred cEEEEE--EEEEECCCCCccc--ccceEEE-----------cCCCEEEEECCCCCCHHHHHHHHhCCCcCC---------
Confidence 588885 7888854433343 3333322 699999999999999999999999996554
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHHHHHHHHHHHhhccCCC----CCc
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSK----TNS 222 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~----~~~ 222 (455)
+|+|.++|........+.++..+++++|+| ++|.. |+++|+..+.....+...+..++.+..+. ...
T Consensus 1290 ------~G~I~IdG~di~~i~~~~lR~~i~iVpQdp--~LF~g-TIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~G 1360 (1495)
T PLN03232 1290 ------KGRIMIDDCDVAKFGLTDLRRVLSIIPQSP--VLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFG 1360 (1495)
T ss_pred ------CceEEECCEEhhhCCHHHHHhhcEEECCCC--eeeCc-cHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCC
Confidence 999999999877666666778899999999 77765 99999987543222222222222222111 011
Q ss_pred ccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 223 SGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 223 s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
..-.+.-.|-.+|+|||||++|||||..+++|+|+||++.
T Consensus 1361 Ldt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATS 1400 (1495)
T PLN03232 1361 LDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATA 1400 (1495)
T ss_pred CCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 1123344566778899999999999999999999999973
No 254
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.68 E-value=8.1e-18 Score=159.26 Aligned_cols=130 Identities=22% Similarity=0.194 Sum_probs=96.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc---ccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER---PATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~---~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+++|+|+..++ +|+|.++|......... .....++|++|++
T Consensus 29 ~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~-- 91 (220)
T TIGR02982 29 NPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---------------EGSLKVLGQELYGASEKELVQLRRNIGYIFQAH-- 91 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CeEEEECCEEhHhcCHhHHHHHHhheEEEcCCh--
Confidence 589999999999999999999999987666 89999998754322111 1235678899998
Q ss_pred EEecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 185 YNYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.+|.+.|+.+|+.+..... ...+..+.++++.. -..+...+..|+||+||++|||++..+|.++|
T Consensus 92 ~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~lS~G~~qrv~laral~~~p~ill 164 (220)
T TIGR02982 92 NLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLG-------DHLDYYPHNLSGGQKQRVAIARALVHRPKLVL 164 (220)
T ss_pred hhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCh-------hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7788889999988754321 11223333333321 12344556677899999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 165 lDEP~ 169 (220)
T TIGR02982 165 ADEPT 169 (220)
T ss_pred EeCCC
Confidence 99996
No 255
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=5e-18 Score=152.49 Aligned_cols=152 Identities=20% Similarity=0.144 Sum_probs=104.1
Q ss_pred chhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCe
Q psy2946 86 MNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGT 161 (455)
Q Consensus 86 ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~ 161 (455)
|+++.|+++.|++ ..++++. ++|.++.++||||||||||+.+++.+...+ +|+|+++|.
T Consensus 1 MI~i~nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---------------~G~i~i~g~ 63 (252)
T COG4604 1 MITIENVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---------------SGEITIDGL 63 (252)
T ss_pred CeeehhhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---------------CceEEEeee
Confidence 6778899999987 4444443 899999999999999999999999998877 999999999
Q ss_pred eeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHH---------HHHHHHHHHHhhccCCCCCcccEEEecCCC
Q psy2946 162 IGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHC---------VERLWKSVDERMNKDSKTNSSGMIINTCGW 232 (455)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~---------~~~l~~~~~~~~~~~~~~~~s~~iint~g~ 232 (455)
.......+.+....+..-|.. .+...+||++-+.|...- .+...+...+.++... .....+|
T Consensus 64 ~~~~~~s~~LAk~lSILkQ~N--~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~---l~dryLd---- 134 (252)
T COG4604 64 ELTSTPSKELAKKLSILKQEN--HINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED---LSDRYLD---- 134 (252)
T ss_pred ecccCChHHHHHHHHHHHhhc--hhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc---hHHHhHH----
Confidence 877665554444444444554 555566666655553211 1122222222222211 1111111
Q ss_pred ccCCcHHHHHHHHHHcCCCEEEEecCchhhH
Q psy2946 233 IKGDGFKCLMACAKSLRVDNILVLDQERLYN 263 (455)
Q Consensus 233 ~~s~G~~q~~~ia~al~~~~~vll~DEpl~~ 263 (455)
.+|+||+||..+|..++.|.+.+++|||+.|
T Consensus 135 ~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNN 165 (252)
T COG4604 135 ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNN 165 (252)
T ss_pred hcccchhhhhhhheeeeccCcEEEecCcccc
Confidence 2345999999999999999999999999854
No 256
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.68 E-value=1.2e-17 Score=159.99 Aligned_cols=129 Identities=17% Similarity=0.155 Sum_probs=92.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcc-cCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQ-LAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~-q~p~~~~ 186 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|...... ........+|++ |.+ .+
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---------------~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~--~~ 106 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLLQPT---------------SGEVRVAGLVPWKR-RKKFLRRIGVVFGQKT--QL 106 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCC---------------ceEEEECCEEcccc-chhhcccEEEEcCCcc--cc
Confidence 799999999999999999999999997666 89999988753221 122334567776 445 56
Q ss_pred ecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCc
Q psy2946 187 YGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE 259 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DE 259 (455)
+...|+.+|+.+..... ...++.+.+.++.. ...|+....+|+||+||+.||+|+..+|.++|+||
T Consensus 107 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-------~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 179 (236)
T cd03267 107 WWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLE-------ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDE 179 (236)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-------hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 77789999987654321 11122233332221 12244455567799999999999999999999999
Q ss_pred hh
Q psy2946 260 RL 261 (455)
Q Consensus 260 pl 261 (455)
|+
T Consensus 180 Pt 181 (236)
T cd03267 180 PT 181 (236)
T ss_pred CC
Confidence 96
No 257
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.68 E-value=4.3e-18 Score=180.38 Aligned_cols=130 Identities=18% Similarity=0.088 Sum_probs=94.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc-ccccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI-ERPATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~-~~~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|....... ....+..++|++|++ .+
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---------------~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~--~~ 90 (501)
T PRK11288 28 RAGQVHALMGENGAGKSTLLKILSGNYQPD---------------AGSILIDGQEMRFASTTAALAAGVAIIYQEL--HL 90 (501)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------CCEEEECCEECCCCCHHHHHhCCEEEEEech--hc
Confidence 689999999999999999999999997666 899999887542211 112344578999988 78
Q ss_pred ecCCCcccCHHHHHH----------HHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 187 YGHLTPNANLELYQH----------CVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~----------~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
+..+|+.+|+.+... ...+.+..+.+.++... ..+.....+|+||+||++||++|..+|.++|
T Consensus 91 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LSgGq~qrv~laral~~~p~lll 163 (501)
T PRK11288 91 VPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-------DPDTPLKYLSIGQRQMVEIAKALARNARVIA 163 (501)
T ss_pred cCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-------CcCCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 888899999876421 01122333444443321 1233444567799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 164 LDEPt 168 (501)
T PRK11288 164 FDEPT 168 (501)
T ss_pred EcCCC
Confidence 99996
No 258
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.68 E-value=1e-17 Score=160.38 Aligned_cols=136 Identities=18% Similarity=0.162 Sum_probs=90.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|...............+|++|++ .++
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~--~~~ 89 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFYDPT---------------SGEILLDGVDIRDLNLRWLRSQIGLVSQEP--VLF 89 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCCCC---------------CCEEEECCEehhhcCHHHHHhhEEEECCch--hhh
Confidence 589999999999999999999999997666 899999997543221122234578899987 566
Q ss_pred cCCCcccCHHHHHHHH-HHHHHHHHHhhccCC----CCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCV-ERLWKSVDERMNKDS----KTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-~~l~~~~~~~~~~~~----~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
. .|+.+|+.+..... ........+...... .........+.....+|+||+||+.||+++..+|.++|+|||+
T Consensus 90 ~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 167 (238)
T cd03249 90 D-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEAT 167 (238)
T ss_pred h-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 5 58988887632110 000111111111000 0000112234455567789999999999999999999999997
No 259
>KOG0055|consensus
Probab=99.67 E-value=1.5e-17 Score=183.84 Aligned_cols=162 Identities=20% Similarity=0.243 Sum_probs=113.6
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.|++++ +.++|.+... ..-+.|++... ++|+.+++|||+||||||...+|-.+
T Consensus 987 ~I~~~~--V~F~YPsRP~-~~Il~~l~l~i-----------~~GqTvALVG~SGsGKSTvI~LLeRf------------- 1039 (1228)
T KOG0055|consen 987 DIEFRN--VSFAYPTRPD-VPVLNNLSLSI-----------RAGQTVALVGPSGSGKSTVISLLERF------------- 1039 (1228)
T ss_pred EEEEee--eEeeCCCCCC-chhhcCCcEEe-----------cCCCEEEEECCCCCCHHHHHHHHHHh-------------
Confidence 377775 7888875432 12222333221 68999999999999999999999988
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHH--HHHHHHHHHhhccCCCCCccc
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV--ERLWKSVDERMNKDSKTNSSG 224 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~--~~l~~~~~~~~~~~~~~~~s~ 224 (455)
+||.+|.|.++|.++....-+.++..++.+.|+| .+|.. |++||+.+....+ .+..+.. +......-....+
T Consensus 1040 --Ydp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP--~LF~~-TIrENI~YG~~~vs~~eIi~Aa-k~ANaH~FI~sLP 1113 (1228)
T KOG0055|consen 1040 --YDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEP--VLFNG-TIRENIAYGSEEVSEEEIIEAA-KLANAHNFISSLP 1113 (1228)
T ss_pred --cCCCCCeEEECCcccccCCHHHHHHhcceeccCc--hhhcc-cHHHHHhccCCCCCHHHHHHHH-HHhhhHHHHhcCc
Confidence 5677999999999988777777888999999999 77775 9999999982211 1111111 1111000000001
Q ss_pred EEEec----CCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 225 MIINT----CGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 225 ~iint----~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.=.|| .|-.+|+|||||++||||+..||+|+|+||-+
T Consensus 1114 ~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEAT 1154 (1228)
T KOG0055|consen 1114 QGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEAT 1154 (1228)
T ss_pred CcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccc
Confidence 11122 36677889999999999999999999999975
No 260
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.1e-18 Score=170.96 Aligned_cols=131 Identities=19% Similarity=0.150 Sum_probs=93.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc--cccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE--RPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~--~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|........ ......++|++|++...
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (275)
T PRK13639 26 EKGEMVALLGPNGAGKSTLFLHFNGILKPT---------------SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQ 90 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ccEEEECCEECccccchHHHHHhheEEEeeChhhh
Confidence 689999999999999999999999987655 8999999976421111 12345678999986323
Q ss_pred EecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecC
Q psy2946 186 NYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~D 258 (455)
++ ..++.+|+.+.... ....+..+.+.++.. + ..+.....+|+||+||++||+|+..+|+++|+|
T Consensus 91 ~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~------~-~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 162 (275)
T PRK13639 91 LF-APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME------G-FENKPPHHLSGGQKKRVAIAGILAMKPEIIVLD 162 (275)
T ss_pred hc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc------h-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 34 35899998764321 112233333333321 1 234555667789999999999999999999999
Q ss_pred chh
Q psy2946 259 ERL 261 (455)
Q Consensus 259 Epl 261 (455)
||+
T Consensus 163 EPt 165 (275)
T PRK13639 163 EPT 165 (275)
T ss_pred CCC
Confidence 996
No 261
>PLN03130 ABC transporter C family member; Provisional
Probab=99.67 E-value=6.1e-18 Score=199.01 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=115.5
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.|++++ ..+.|..+..+.++ |+++.. ++|++++|||++|||||||+++|.++..+
T Consensus 1237 ~I~f~n--Vsf~Y~~~~~~VL~--~is~~I-----------~~GekVaIVGrSGSGKSTLl~lL~rl~~p---------- 1291 (1622)
T PLN03130 1237 SIKFED--VVLRYRPELPPVLH--GLSFEI-----------SPSEKVGIVGRTGAGKSSMLNALFRIVEL---------- 1291 (1622)
T ss_pred cEEEEE--EEEEeCCCCCceec--ceeEEE-----------cCCCEEEEECCCCCCHHHHHHHHhCcCCC----------
Confidence 588886 88888654334443 333322 69999999999999999999999999554
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHHHHHHHHHHHhhccCCC----CCc
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSK----TNS 222 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~----~~~ 222 (455)
.+|+|.++|........+.++..+++++|+| ++|.. |+++|+..+.....+......++.+..+. ...
T Consensus 1292 -----~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp--~LF~G-TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~G 1363 (1622)
T PLN03130 1292 -----ERGRILIDGCDISKFGLMDLRKVLGIIPQAP--VLFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLG 1363 (1622)
T ss_pred -----CCceEEECCEecccCCHHHHHhccEEECCCC--ccccc-cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccc
Confidence 4999999999877766667788899999999 77765 99999987643222222222222221110 001
Q ss_pred ccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 223 SGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 223 s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
..-.+.-.|..+|+|||||++|||||..+|+|+|+||++
T Consensus 1364 Ldt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEAT 1402 (1622)
T PLN03130 1364 LDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEAT 1402 (1622)
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 111233346667889999999999999999999999986
No 262
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.67 E-value=2.3e-18 Score=166.34 Aligned_cols=119 Identities=23% Similarity=0.232 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|. ..++|++|++ .++
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~---------------~G~i~~~~~-----------~~i~~v~q~~--~~~ 79 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLVAPD---------------EGVIKRNGK-----------LRIGYVPQKL--YLD 79 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCc-----------cCEEEecccc--ccc
Confidence 699999999999999999999999997665 888877652 2367788877 455
Q ss_pred cCC--CcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHL--TPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~--sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+.+ ++.+++.+......+.+..+.+.++... ..+.+...+|+||+||++||+|+..+|.++|+|||+
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 148 (251)
T PRK09544 80 TTLPLTVNRFLRLRPGTKKEDILPALKRVQAGH-------LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPT 148 (251)
T ss_pred cccChhHHHHHhccccccHHHHHHHHHHcCChH-------HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 442 4444433221111122233333333211 224445566779999999999999999999999996
No 263
>PTZ00243 ABC transporter; Provisional
Probab=99.67 E-value=1e-17 Score=196.79 Aligned_cols=164 Identities=17% Similarity=0.099 Sum_probs=116.5
Q ss_pred cEEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccE
Q psy2946 66 CSITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPI 145 (455)
Q Consensus 66 ~~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~ 145 (455)
..|++++ +++.|..+..+.++ |+++.. ++|++++|+|++|||||||+++|.++..+.
T Consensus 1307 G~I~f~n--Vsf~Y~~~~~~vL~--~vsf~I-----------~~GekVaIVGrTGSGKSTLl~lLlrl~~p~-------- 1363 (1560)
T PTZ00243 1307 GSLVFEG--VQMRYREGLPLVLR--GVSFRI-----------APREKVGIVGRTGSGKSTLLLTFMRMVEVC-------- 1363 (1560)
T ss_pred CeEEEEE--EEEEeCCCCCceee--cceEEE-----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC--------
Confidence 3588886 88888654433443 333322 699999999999999999999999996555
Q ss_pred EEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCC----C
Q psy2946 146 FVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKT----N 221 (455)
Q Consensus 146 ~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~----~ 221 (455)
+|+|.++|..+.....+.++..+++++|+| ++|.. |+++|+..+.....+......++.+..+.. .
T Consensus 1364 -------~G~I~IDG~di~~i~l~~LR~~I~iVpQdp--~LF~g-TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~ 1433 (1560)
T PTZ00243 1364 -------GGEIRVNGREIGAYGLRELRRQFSMIPQDP--VLFDG-TVRQNVDPFLEASSAEVWAALELVGLRERVASESE 1433 (1560)
T ss_pred -------CcEEEECCEEcccCCHHHHHhcceEECCCC--ccccc-cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcc
Confidence 999999999877766666788899999999 77766 999999875332222222222322221110 0
Q ss_pred cccEEEecCCCccCCcHHHHHHHHHHcCCC-EEEEecCchhh
Q psy2946 222 SSGMIINTCGWIKGDGFKCLMACAKSLRVD-NILVLDQERLY 262 (455)
Q Consensus 222 ~s~~iint~g~~~s~G~~q~~~ia~al~~~-~~vll~DEpl~ 262 (455)
...-.+.-.|-.+|+|||||++|||||..+ +.|+|+||++.
T Consensus 1434 Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATS 1475 (1560)
T PTZ00243 1434 GIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATA 1475 (1560)
T ss_pred cccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCc
Confidence 011122234666788999999999999995 89999999974
No 264
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.67 E-value=4.6e-17 Score=164.44 Aligned_cols=134 Identities=21% Similarity=0.172 Sum_probs=100.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|+.++|+||+|||||||.|+|.|...+. .|.+.++|........+.+-..+||.+|+- .+|
T Consensus 360 ~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~---------------~G~VRLDga~l~qWd~e~lG~hiGYLPQdV--eLF 422 (580)
T COG4618 360 QAGEALGIIGPSGSGKSTLARLLVGIWPPT---------------SGSVRLDGADLRQWDREQLGRHIGYLPQDV--ELF 422 (580)
T ss_pred cCCceEEEECCCCccHHHHHHHHHcccccC---------------CCcEEecchhhhcCCHHHhccccCcCcccc--eec
Confidence 589999999999999999999999998776 999999999877776777778899999998 777
Q ss_pred cCCCcccCHHHHHHHH-HH------HHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-ER------LWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-~~------l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
.. |+.+|+..+.... .+ ....+.+....-+. ...-.|--.|-.+|+|||||+++||||.-+|.++++|||
T Consensus 423 ~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~--GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEP 499 (580)
T COG4618 423 DG-TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQ--GYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEP 499 (580)
T ss_pred CC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcC--CccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCC
Confidence 76 8999999876221 11 01111111111111 111112224666788999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
=
T Consensus 500 N 500 (580)
T COG4618 500 N 500 (580)
T ss_pred C
Confidence 3
No 265
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.9e-18 Score=185.88 Aligned_cols=133 Identities=15% Similarity=0.050 Sum_probs=97.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc---cccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE---RPATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~---~~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|........ ..++..++|++|++..
T Consensus 348 ~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---------------~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~ 412 (623)
T PRK10261 348 WPGETLSLVGESGSGKSTTGRALLRLVESQ---------------GGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYA 412 (623)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCC---------------CcEEEECCEECCcCCHHHHHHhcCCeEEEecCchh
Confidence 799999999999999999999999997666 8999999975432211 1133467999999844
Q ss_pred EEecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 185 YNYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.+++.+|+.+|+.+..... ...+..+.+.++.. ....+.....+|+||+||++|||||..+|.++|
T Consensus 413 ~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~------~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lll 486 (623)
T PRK10261 413 SLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLL------PEHAWRYPHEFSGGQRQRICIARALALNPKVII 486 (623)
T ss_pred hcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCC------HHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5788889999987643221 11223334443331 112344556677899999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 487 lDEPt 491 (623)
T PRK10261 487 ADEAV 491 (623)
T ss_pred EeCCc
Confidence 99996
No 266
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.67 E-value=8.3e-18 Score=162.42 Aligned_cols=133 Identities=16% Similarity=0.097 Sum_probs=87.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccc-cCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPAT-IEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~-~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+++|+|+.. ++|.+|+|.++|............ ...++++|.+ .+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~--~~ 95 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIAGHPA-------------YKILEGDILFKGESILDLEPEERAHLGIFLAFQYP--IE 95 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCc-------------CcCCCceEEECCEEcccCChhhhheeeEEEEeccc--cc
Confidence 6899999999999999999999999721 123389999988754322111111 1356778887 67
Q ss_pred ecCCCcccCHHHHHHHH--------------HHHHHHHHHhhccCCCCCcccEEEecCCC-ccCCcHHHHHHHHHHcCCC
Q psy2946 187 YGHLTPNANLELYQHCV--------------ERLWKSVDERMNKDSKTNSSGMIINTCGW-IKGDGFKCLMACAKSLRVD 251 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~~--------------~~l~~~~~~~~~~~~~~~~s~~iint~g~-~~s~G~~q~~~ia~al~~~ 251 (455)
+..+++.+|+.+..... ...+..+.+.++.. ....+.... .+|+||+||++||+|+..+
T Consensus 96 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~~~LSgG~~qrv~la~al~~~ 169 (252)
T CHL00131 96 IPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMD------PSFLSRNVNEGFSGGEKKRNEILQMALLD 169 (252)
T ss_pred cccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCc------hhhhccccccCCCHHHHHHHHHHHHHHcC
Confidence 77778888766532110 01112222222221 112233333 3677999999999999999
Q ss_pred EEEEecCchh
Q psy2946 252 NILVLDQERL 261 (455)
Q Consensus 252 ~~vll~DEpl 261 (455)
|.++|+|||+
T Consensus 170 p~llllDEPt 179 (252)
T CHL00131 170 SELAILDETD 179 (252)
T ss_pred CCEEEEcCCc
Confidence 9999999997
No 267
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.67 E-value=1.9e-17 Score=178.57 Aligned_cols=136 Identities=16% Similarity=0.155 Sum_probs=96.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+|+||||||||+++|+|+..+. +|+|.++|........+.++...+|++|++ ++|
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~--~lf 421 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVYDPT---------------VGQILIDGIDINTVTRESLRKSIATVFQDA--GLF 421 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCCCCC---------------CCEEEECCEEhhhCCHHHHHhheEEEccCC--ccC
Confidence 689999999999999999999999996655 999999998654443344566789999999 677
Q ss_pred cCCCcccCHHHHHHH-HHHHHHHHHHhhccCC----CCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHC-VERLWKSVDERMNKDS----KTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-~~~l~~~~~~~~~~~~----~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
. .|+++|+.++... ..+......+..+..+ ........++..|..+|+||+||++|||||..+|+++|+|||+
T Consensus 422 ~-~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpt 499 (585)
T TIGR01192 422 N-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEAT 499 (585)
T ss_pred c-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 5 4999999876321 1111111111111100 0001111234456677889999999999999999999999997
No 268
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.67 E-value=1.7e-17 Score=160.78 Aligned_cols=130 Identities=18% Similarity=0.112 Sum_probs=93.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|++.+. +|+|.++|..............++|++|++ .++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~--~~~ 87 (256)
T TIGR03873 25 PPGSLTGLLGPNGSGKSTLLRLLAGALRPD---------------AGTVDLAGVDLHGLSRRARARRVALVEQDS--DTA 87 (256)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCC---------------CCEEEECCEEcccCCHHHHhhheEEecccC--ccC
Confidence 589999999999999999999999987665 899999997543322222233578889987 566
Q ss_pred cCCCcccCHHHHHHH-----------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 188 GHLTPNANLELYQHC-----------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-----------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
...|+.+|+.+.... ..+.+..+.+.++.. ...+.....+|+||+||++||+|+..+|.++|
T Consensus 88 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (256)
T TIGR03873 88 VPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-------HLADRDMSTLSGGERQRVHVARALAQEPKLLL 160 (256)
T ss_pred CCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 778999998764211 011122223332221 13355556677899999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 161 lDEPt 165 (256)
T TIGR03873 161 LDEPT 165 (256)
T ss_pred EcCcc
Confidence 99996
No 269
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=7.5e-18 Score=167.32 Aligned_cols=159 Identities=15% Similarity=0.096 Sum_probs=100.7
Q ss_pred cchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
+|+.+.|+++.|++ ..++++. .+|++++|+|+||||||||+++|+|+..+. . ..|.+|+|.++|
T Consensus 44 ~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~---~-------~~p~~G~I~i~g 111 (305)
T PRK14264 44 AKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRI---K-------AARIDGSVELDG 111 (305)
T ss_pred ceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccc---C-------CCCCceEEEECC
Confidence 34555555555543 1233332 799999999999999999999999986421 0 002389999998
Q ss_pred eeecccc--ccccccCCCCcccCceEEEecCCCcccCHHHHHHHH--------------------HHHHHHHHHhhccCC
Q psy2946 161 TIGALVI--ERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV--------------------ERLWKSVDERMNKDS 218 (455)
Q Consensus 161 ~~~~~~~--~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~--------------------~~l~~~~~~~~~~~~ 218 (455)
....... ....+..++|++|++ .+|+. |+.+|+.+..... .+.+..+.+.++...
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~--~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 188 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSP--NPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD 188 (305)
T ss_pred EEcccccccHHHHhhceEEEccCC--ccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch
Confidence 7543210 112334678999988 56664 9999988643210 111222222222110
Q ss_pred CCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 219 KTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 219 ~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
. .. -..+.....+|+||+||++||+||..+|.++|+|||+
T Consensus 189 ~--~~-~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPt 228 (305)
T PRK14264 189 E--VN-DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPA 228 (305)
T ss_pred h--hh-HHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0 00 0123344556779999999999999999999999996
No 270
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=7.9e-18 Score=163.55 Aligned_cols=138 Identities=16% Similarity=0.091 Sum_probs=91.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc--cccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+..+. |.-+ ..|+|.++|...... ....++...+|++|++ .
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---g~i~-------~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~--~ 98 (261)
T PRK14258 31 YQSKVTAIIGPSGCGKSTFLKCLNRMNELE---SEVR-------VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKP--N 98 (261)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCCC---CCcc-------ccceEEECCEEhhccccchHHhhccEEEEecCC--c
Confidence 689999999999999999999999997643 2111 157777777643211 1112344578888887 5
Q ss_pred EecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
+|. .|+.+|+.+..... ......+.+.++.... ..-..+.+...+|+||+||++|||++..+|.++|+
T Consensus 99 l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllL 174 (261)
T PRK14258 99 LFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDE---IKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLM 174 (261)
T ss_pred cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcch---hhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 666 79999987643211 1112222233322110 00123455566778999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 175 DEP~ 178 (261)
T PRK14258 175 DEPC 178 (261)
T ss_pred eCCC
Confidence 9997
No 271
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=8.2e-18 Score=165.85 Aligned_cols=132 Identities=14% Similarity=0.095 Sum_probs=91.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc-----cccccccCCCCcccCc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV-----IERPATIEDGFSQLAP 182 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~-----~~~~~~~~~~~~~q~p 182 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|...... ....++..++|++|++
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~ 99 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLIISE---------------TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFP 99 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------CceEEECCEEccccccccccHHHHhccEEEEEeCc
Confidence 589999999999999999999999997666 89999888753211 0112334578899987
Q ss_pred eEEEecCCCcccCHHHHHHHH----H---HHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEE
Q psy2946 183 IVYNYGHLTPNANLELYQHCV----E---RLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILV 255 (455)
Q Consensus 183 ~~~~~g~~sv~~n~~~~~~~~----~---~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vl 255 (455)
...++. .|+.+|+.+..... . ..+..+.+.++.. .-..+.....+|+||+||++|||||..+|.++
T Consensus 100 ~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~------~~~~~~~~~~LS~Gq~qrv~laral~~~p~lL 172 (289)
T PRK13645 100 EYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP------EDYVKRSPFELSGGQKRRVALAGIIAMDGNTL 172 (289)
T ss_pred chhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCC------hhHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 323343 48999987643211 1 1122223333221 11234455567789999999999999999999
Q ss_pred ecCchh
Q psy2946 256 LDQERL 261 (455)
Q Consensus 256 l~DEpl 261 (455)
|+|||+
T Consensus 173 lLDEPt 178 (289)
T PRK13645 173 VLDEPT 178 (289)
T ss_pred EEeCCc
Confidence 999996
No 272
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.66 E-value=6.4e-17 Score=150.28 Aligned_cols=126 Identities=14% Similarity=0.090 Sum_probs=90.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|...+. +|++.++|...... . ....+|++|.+ .++
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~i~~~-~---~~~~~~~~~~~--~~~ 82 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQPS---------------SGNIYYKNCNINNI-A---KPYCTYIGHNL--GLK 82 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCC---------------CcEEEECCcccChh-h---hhhEEeccCCc--CCC
Confidence 589999999999999999999999997665 89998888643221 1 12356777776 566
Q ss_pred cCCCcccCHHHHHHHH--HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCV--ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~--~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...|+.+|+.+..... ......+.+.++... ..+.....+|+||+||+++|+|+..+|.++|+|||+
T Consensus 83 ~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~ 151 (195)
T PRK13541 83 LEMTVFENLKFWSEIYNSAETLYAAIHYFKLHD-------LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVE 151 (195)
T ss_pred ccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHh-------hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 7789999998754321 122233333332211 123344456779999999999999999999999997
No 273
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.66 E-value=5e-17 Score=168.23 Aligned_cols=166 Identities=16% Similarity=0.132 Sum_probs=115.6
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
-+++++ ...+|.....+..-+.|+++.. .+||+++|+|++||||||+++.|.|++... + .
T Consensus 5 lL~V~n--L~v~~~~~~~~~~~v~~vsf~v-----------~~GE~lgIvGESGsGKSt~a~~i~gll~~~---~-~--- 64 (539)
T COG1123 5 LLEVEN--LTVEFATDGGRVPAVRDVSFEV-----------EPGEILGIVGESGSGKSTLALALMGLLPEG---G-R--- 64 (539)
T ss_pred eEEEec--eEEEEecCCcceeeeecceEEe-----------cCCcEEEEEcCCCCCHHHHHHHHhccCCCC---C-c---
Confidence 356664 6666655544333344555433 589999999999999999999999997654 1 2
Q ss_pred EecCCCCCcCCCCCeeeccccccc----cccCCCCcccCceEEEecCCCcccCHHHHHHHH--------HHHHHHHHHhh
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERP----ATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV--------ERLWKSVDERM 214 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~----~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~ 214 (455)
..+|+|.++|........++ ....++++||+|+..|.+-+++.+.+.-..... ...+.++.+++
T Consensus 65 ----~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~V 140 (539)
T COG1123 65 ----ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQV 140 (539)
T ss_pred ----ccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHc
Confidence 23899999998655544432 224578999999888888778776554433221 22334444455
Q ss_pred ccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 215 NKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 215 ~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+....... +..+..+|+||+||+.||+|++.+|.++|.|||+
T Consensus 141 gl~~~~~~-----~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPT 182 (539)
T COG1123 141 GLPDPERR-----DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT 182 (539)
T ss_pred CCCChhhh-----ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCc
Confidence 44332221 5567788889999999999999999999999995
No 274
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=2.3e-17 Score=157.79 Aligned_cols=128 Identities=21% Similarity=0.231 Sum_probs=94.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|....... ......+|++|++ .+|
T Consensus 23 ~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---------------~G~v~i~g~~~~~~~--~~~~~i~~~~q~~--~~~ 83 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLETIAGFIKPD---------------SGKILLNGKDITNLP--PEKRDISYVPQNY--ALF 83 (235)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCCC---------------ceEEEECCEEcCcCC--hhHcCEEEEeecC--ccC
Confidence 589999999999999999999999997665 899999997543211 1234578899988 788
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...|+.+|+.+..... ...+..+.+.++.. -..+.....+|+|++||++||+|+..+|.++++|||
T Consensus 84 ~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 156 (235)
T cd03299 84 PHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID-------HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEP 156 (235)
T ss_pred CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-------hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 8889999987643221 11122233333221 123444556777999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 157 t 157 (235)
T cd03299 157 F 157 (235)
T ss_pred c
Confidence 6
No 275
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=3.4e-17 Score=156.58 Aligned_cols=136 Identities=18% Similarity=0.156 Sum_probs=90.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|...........+...+|++|++ .++
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---------------~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~--~~~ 87 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFYDVS---------------SGSILIDGQDIREVTLDSLRRAIGVVPQDT--VLF 87 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCC---------------CCEEEECCEEhhhCCHHHHHhhEEEECCCC--hhh
Confidence 589999999999999999999999997666 899999987543322222344578899988 666
Q ss_pred cCCCcccCHHHHHHHH-HHHHHHHHHhhccCCC----CCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCV-ERLWKSVDERMNKDSK----TNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-~~l~~~~~~~~~~~~~----~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
. .|+.+|+.+..... ........+....... ........+.....+|+||+||++||+||..+|.++|+|||+
T Consensus 88 ~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~ 165 (236)
T cd03253 88 N-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEAT 165 (236)
T ss_pred c-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 5 58999887642110 0001111111110000 000011123334456779999999999999999999999997
No 276
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.66 E-value=2.1e-17 Score=194.36 Aligned_cols=163 Identities=15% Similarity=0.114 Sum_probs=117.2
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.|++++ ..+.|..+..+.+ .|+++.. ++|++++|||++|||||||+++|.++..
T Consensus 1284 ~I~f~n--Vsf~Y~~~~~~vL--~~is~~I-----------~~GekiaIVGrTGsGKSTL~~lL~rl~~----------- 1337 (1522)
T TIGR00957 1284 RVEFRN--YCLRYREDLDLVL--RHINVTI-----------HGGEKVGIVGRTGAGKSSLTLGLFRINE----------- 1337 (1522)
T ss_pred cEEEEE--EEEEeCCCCcccc--cceeEEE-----------cCCCEEEEECCCCCCHHHHHHHHhcCcc-----------
Confidence 588885 8888865433333 3333322 6999999999999999999999999854
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHHHHHHHHHHHhhccCCC----CCc
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSK----TNS 222 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~----~~~ 222 (455)
|.+|+|.++|..+.....+.++..+++++|+| ++|.. |+++|+..+.....+......++.+..+. ...
T Consensus 1338 ----~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp--~LF~g-TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~G 1410 (1522)
T TIGR00957 1338 ----SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDP--VLFSG-SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDK 1410 (1522)
T ss_pred ----CCCCeEEECCEEccccCHHHHHhcCeEECCCC--cccCc-cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccC
Confidence 44999999999887776667788899999999 77876 99999985432222222222222222111 011
Q ss_pred ccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 223 SGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 223 s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
..-.+.-.|-.+|+||+||++||||+..+++|+|+||++.
T Consensus 1411 Ldt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTS 1450 (1522)
T TIGR00957 1411 LDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATA 1450 (1522)
T ss_pred CCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 1223444566778899999999999999999999999974
No 277
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.2e-17 Score=174.14 Aligned_cols=152 Identities=13% Similarity=0.026 Sum_probs=104.2
Q ss_pred cchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
+|+++.|+++.+. .++++. .+|++++|+||||||||||+|+|+|+..++ +|+|.++|
T Consensus 264 ~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---------------~G~I~~~g 324 (510)
T PRK09700 264 TVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---------------GGEIRLNG 324 (510)
T ss_pred cEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---------------CCeEEECC
Confidence 4677777776542 134432 899999999999999999999999997666 89999998
Q ss_pred eeecccc-ccccccCCCCcccCce-EEEecCCCcccCHHHHHHH----------------HHHHHHHHHHhhccCCCCCc
Q psy2946 161 TIGALVI-ERPATIEDGFSQLAPI-VYNYGHLTPNANLELYQHC----------------VERLWKSVDERMNKDSKTNS 222 (455)
Q Consensus 161 ~~~~~~~-~~~~~~~~~~~~q~p~-~~~~g~~sv~~n~~~~~~~----------------~~~l~~~~~~~~~~~~~~~~ 222 (455)
....... ....+..++|++|.+. ..++..+|+.+|+.+.... ....+..+.++++..
T Consensus 325 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----- 399 (510)
T PRK09700 325 KDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK----- 399 (510)
T ss_pred EECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC-----
Confidence 6432110 0112345789998741 2577788999988753210 011123333443321
Q ss_pred ccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 223 SGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 223 s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
....+.+...+|+||+||++||++|..+|.++|+|||+
T Consensus 400 -~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt 437 (510)
T PRK09700 400 -CHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPT 437 (510)
T ss_pred -CCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 01235555667889999999999999999999999997
No 278
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.66 E-value=1.6e-17 Score=157.69 Aligned_cols=137 Identities=21% Similarity=0.160 Sum_probs=95.2
Q ss_pred hhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCee
Q psy2946 87 NYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTI 162 (455)
Q Consensus 87 l~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~ 162 (455)
+.+.|+++.|++ ..++++. .+|++++|+|+||||||||+++|+|+..+. +|+|.++|..
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---------------~G~i~~~g~~ 85 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---------------SGTVTVRGRV 85 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEE
Confidence 566788888876 3355553 899999999999999999999999987655 8999998875
Q ss_pred eccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccC
Q psy2946 163 GALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKG 235 (455)
Q Consensus 163 ~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s 235 (455)
.... . ... .++...|+.+|+.+..... ......+.+.++... ..+.+...+|
T Consensus 86 ~~~~-----~-------~~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS 144 (224)
T cd03220 86 SSLL-----G-------LGG--GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGD-------FIDLPVKTYS 144 (224)
T ss_pred chhh-----c-------ccc--cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------hhhCChhhCC
Confidence 3210 0 111 3445678999987654321 111222222222211 1234445567
Q ss_pred CcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 236 DGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 236 ~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+||+||++|||++..+|.++|+|||+
T Consensus 145 gG~~qrv~laral~~~p~llllDEP~ 170 (224)
T cd03220 145 SGMKARLAFAIATALEPDILLIDEVL 170 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 79999999999999999999999997
No 279
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.66 E-value=7.2e-18 Score=182.84 Aligned_cols=135 Identities=14% Similarity=0.094 Sum_probs=93.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecc-------c---ccc---cc-cc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGAL-------V---IER---PA-TI 173 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~-------~---~~~---~~-~~ 173 (455)
.+|++++|+|+||||||||+|+|+|++.+. +|.|.+.|..... . ... .. ..
T Consensus 40 ~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---------------~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 104 (623)
T PRK10261 40 QRGETLAIVGESGSGKSVTALALMRLLEQA---------------GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGA 104 (623)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCC---------------CeEEEECCEEeccccccccccccCCHHHHHHHhCC
Confidence 799999999999999999999999997665 7777776642210 0 000 11 23
Q ss_pred CCCCcccCceEEEecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHH
Q psy2946 174 EDGFSQLAPIVYNYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACA 245 (455)
Q Consensus 174 ~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia 245 (455)
.++|++|+|...+++.+|+.+|+.+..... ...+.++.+.++.... ....+.+...+|+||+||++||
T Consensus 105 ~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----~~~~~~~~~~LSgGq~QRv~iA 180 (623)
T PRK10261 105 DMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA----QTILSRYPHQLSGGMRQRVMIA 180 (623)
T ss_pred CEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh----hhHHhCCCccCCHHHHHHHHHH
Confidence 578999987444677889999998754321 1122333334333110 0123445566777999999999
Q ss_pred HHcCCCEEEEecCchh
Q psy2946 246 KSLRVDNILVLDQERL 261 (455)
Q Consensus 246 ~al~~~~~vll~DEpl 261 (455)
+||..+|.++|+|||+
T Consensus 181 ~AL~~~P~lLllDEPt 196 (623)
T PRK10261 181 MALSCRPAVLIADEPT 196 (623)
T ss_pred HHHhCCCCEEEEeCCC
Confidence 9999999999999995
No 280
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.66 E-value=1.1e-17 Score=176.79 Aligned_cols=131 Identities=11% Similarity=-0.045 Sum_probs=87.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.+.|...............++++|++...++
T Consensus 27 ~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---------------~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (490)
T PRK10938 27 NAGDSWAFVGANGSGKSALARALAGELPLL---------------SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDML 91 (490)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCC---------------CceEEECCcccccCCHHHHHHHhceeccCcchhhc
Confidence 689999999999999999999999997666 88888877543221111122346788887522121
Q ss_pred -c-----CCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 -G-----HLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 -g-----~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
. .+++.+++.+... ..+.++.+.+.++... ..|.+...+|+||+||++||+||..+|.++|+|||+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~-------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (490)
T PRK10938 92 SPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITA-------LLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPF 163 (490)
T ss_pred ccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHh-------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 1 3466665543211 1222333444443321 124455566779999999999999999999999996
No 281
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.66 E-value=3.6e-17 Score=175.34 Aligned_cols=159 Identities=16% Similarity=0.086 Sum_probs=106.1
Q ss_pred EEEEEeeccceeeeecC---CcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCc
Q psy2946 67 SITMKNARKNMTYVSKE---TPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRK 143 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~---t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~ 143 (455)
.|++++ ..+.|...+ .+.+ .|+++.+ ++|++++|+||||||||||+++|+|+..++
T Consensus 337 ~i~~~~--v~f~y~~~~~~~~~~l--~~vs~~i-----------~~G~~~aivG~sGsGKSTl~~ll~g~~~p~------ 395 (555)
T TIGR01194 337 SIELKD--VHMNPKAPEGSEGFAL--GPIDLRI-----------AQGDIVFIVGENGCGKSTLAKLFCGLYIPQ------ 395 (555)
T ss_pred eEEEEE--EEEEeCCCCCCcCcee--ccceEEE-----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC------
Confidence 477775 777775421 1233 2333221 689999999999999999999999986555
Q ss_pred cEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q psy2946 144 PIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSS 223 (455)
Q Consensus 144 ~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s 223 (455)
+|+|.++|..........++...++++|++ ++|.+ |+.+|.. .....+......+.++........
T Consensus 396 ---------~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~--~lf~~-ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~l 461 (555)
T TIGR01194 396 ---------EGEILLDGAAVSADSRDDYRDLFSAIFADF--HLFDD-LIGPDEG--EHASLDNAQQYLQRLEIADKVKIE 461 (555)
T ss_pred ---------CcEEEECCEECCCCCHHHHHhhCcEEccCh--hhhhh-hhhcccc--cchhHHHHHHHHHHcCCchhhccc
Confidence 999999998765544445566789999998 67765 6777742 111222233334444333221111
Q ss_pred cEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 224 GMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 224 ~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+.=.||. ..+|+||+||++||||+..+|+++|+|||+
T Consensus 462 p~g~~t~-~~LSgGq~qRlalaRall~~~~ililDE~t 498 (555)
T TIGR01194 462 DGGFSTT-TALSTGQQKRLALICAWLEDRPILLFDEWA 498 (555)
T ss_pred ccccCCc-ccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 1111221 346779999999999999999999999996
No 282
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=8.6e-18 Score=162.19 Aligned_cols=138 Identities=15% Similarity=0.117 Sum_probs=92.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc--ccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI--ERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~--~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|+.... + ..|.+|+|.++|....... ....+..++|++|++ .
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------~----~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~--~ 94 (250)
T PRK14266 27 PKNSVTALIGPSGCGKSTFIRTLNRMNDLI------P----GFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP--N 94 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhccC------C----CCCCccEEEECCEEcccccccHHHHhhheEEEecCC--c
Confidence 589999999999999999999999985311 0 0023899999997533210 112345689999998 6
Q ss_pred EecCCCcccCHHHHHHH--------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 186 NYGHLTPNANLELYQHC--------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~--------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
+|.. |+.+|+.+.... ..+.+....+.++..... . -..+.+...+|+||+||++||||+..+|.++|+
T Consensus 95 ~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 170 (250)
T PRK14266 95 PFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEV--K-DKLDKSALGLSGGQQQRLCIARTIAVSPEVILM 170 (250)
T ss_pred cCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhH--H-HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 6664 899998764321 111222223332221100 0 113556667788999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 171 DEP~ 174 (250)
T PRK14266 171 DEPC 174 (250)
T ss_pred cCCC
Confidence 9997
No 283
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.6e-17 Score=147.14 Aligned_cols=130 Identities=21% Similarity=0.094 Sum_probs=95.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|+.+-|.||||||||||+|+|+|++.++ +|+|.+.|.-+....+.. ....-|.-..+ ..=
T Consensus 26 ~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---------------~G~v~~~~~~i~~~~~~~-~~~l~yLGH~~--giK 87 (209)
T COG4133 26 NAGEALQITGPNGAGKTTLLRILAGLLRPD---------------AGEVYWQGEPIQNVRESY-HQALLYLGHQP--GIK 87 (209)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcccCCC---------------CCeEEecCCCCccchhhH-HHHHHHhhccc--ccc
Confidence 699999999999999999999999998877 999999887544332211 11122222233 455
Q ss_pred cCCCcccCHHHHHHHHHH----HHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 188 GHLTPNANLELYQHCVER----LWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~----l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
..+|+.||+.||...... ...+..+.++. .+ +.|.|-..+|.||++|++|||-+....++.|+|||+.
T Consensus 88 ~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL------~g-~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~t 159 (209)
T COG4133 88 TELTALENLHFWQRFHGSGNAATIWEALAQVGL------AG-LEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFT 159 (209)
T ss_pred chhhHHHHHHHHHHHhCCCchhhHHHHHHHcCc------cc-ccccchhhcchhHHHHHHHHHHHcCCCCceeecCccc
Confidence 678999999999886542 22223333332 22 4566767778899999999999999999999999974
No 284
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.65 E-value=4.9e-17 Score=156.83 Aligned_cols=129 Identities=19% Similarity=0.107 Sum_probs=91.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+. +. +|+|.++|...............+|++|.+ .++
T Consensus 20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl~-~~---------------~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~--~~~ 81 (248)
T PRK03695 20 RAGEILHLVGPNGAGKSTLLARMAGLL-PG---------------SGSIQFAGQPLEAWSAAELARHRAYLSQQQ--TPP 81 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC-CC---------------CeEEEECCEecCcCCHHHHhhheEEecccC--ccC
Confidence 799999999999999999999999985 33 799999987543221112223468888887 566
Q ss_pred cCCCcccCHHHHHHH------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCC-------CEEE
Q psy2946 188 GHLTPNANLELYQHC------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRV-------DNIL 254 (455)
Q Consensus 188 g~~sv~~n~~~~~~~------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~-------~~~v 254 (455)
...|+.+|+.++... .......+.+.++... ..+.....+|+||+||++||+|+.. +|.+
T Consensus 82 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~l 154 (248)
T PRK03695 82 FAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDD-------KLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQL 154 (248)
T ss_pred CCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHh-------HhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCE
Confidence 677899988765211 1112233333333221 2244556677799999999999985 7799
Q ss_pred EecCchh
Q psy2946 255 VLDQERL 261 (455)
Q Consensus 255 ll~DEpl 261 (455)
+|+|||+
T Consensus 155 lllDEPt 161 (248)
T PRK03695 155 LLLDEPM 161 (248)
T ss_pred EEEcCCc
Confidence 9999997
No 285
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.65 E-value=3.3e-17 Score=175.41 Aligned_cols=156 Identities=15% Similarity=0.102 Sum_probs=103.9
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.+++++ ..+.|.. +.+.+ .|+++.+ ++|++++|+|+||||||||+++|+|+..++
T Consensus 322 ~i~~~~--v~f~y~~-~~~~l--~~i~~~i-----------~~G~~~aivG~sGsGKSTL~~ll~g~~~~~--------- 376 (547)
T PRK10522 322 TLELRN--VTFAYQD-NGFSV--GPINLTI-----------KRGELLFLIGGNGSGKSTLAMLLTGLYQPQ--------- 376 (547)
T ss_pred eEEEEE--EEEEeCC-CCeEE--ecceEEE-----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------
Confidence 477775 6777752 22333 2333222 689999999999999999999999986555
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEE
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMI 226 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~i 226 (455)
+|+|.++|..........++..+++++|++ ++|.. |+.+|-. ....+...+..++++.........-.
T Consensus 377 ------~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~--~lf~~-ti~~n~~---~~~~~~~~~~~~~~~l~~~~~~~~~~ 444 (547)
T PRK10522 377 ------SGEILLDGKPVTAEQPEDYRKLFSAVFTDF--HLFDQ-LLGPEGK---PANPALVEKWLERLKMAHKLELEDGR 444 (547)
T ss_pred ------CeEEEECCEECCCCCHHHHhhheEEEecCh--hHHHH-hhccccC---chHHHHHHHHHHHcCCchhhhccccC
Confidence 999999998655443344566788999998 66665 6766621 11122223333333322211110000
Q ss_pred EecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 227 INTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 227 int~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
..|-.+|+||+||++||||+..+|+++|+|||+
T Consensus 445 --~~G~~LSgGq~qRl~lARal~~~~~ililDE~t 477 (547)
T PRK10522 445 --ISNLKLSKGQKKRLALLLALAEERDILLLDEWA 477 (547)
T ss_pred --CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 024567789999999999999999999999996
No 286
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.65 E-value=3e-17 Score=157.20 Aligned_cols=128 Identities=20% Similarity=0.221 Sum_probs=93.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|...... .......+|++|.+ .+|
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---------------~G~i~i~g~~~~~~--~~~~~~i~~~~q~~--~~~ 84 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLEQPD---------------SGRIRLNGQDATRV--HARDRKIGFVFQHY--ALF 84 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------ceEEEECCEEcCcC--ChhhcCEEEEecCh--hhc
Confidence 589999999999999999999999986655 89999998754321 12334578999988 788
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
...|+.+|+.+..... ...+..+.+++... ...|......|.||+||++||+++..+|.++|+|||
T Consensus 85 ~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP 157 (237)
T TIGR00968 85 KHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE-------GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEP 157 (237)
T ss_pred cCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH-------hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 8889999987643321 11122233333221 122334445667999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 158 ~ 158 (237)
T TIGR00968 158 F 158 (237)
T ss_pred c
Confidence 6
No 287
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.65 E-value=5.3e-17 Score=147.02 Aligned_cols=96 Identities=24% Similarity=0.188 Sum_probs=77.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|++.+. +|+|.++|. ...+|++|++ .++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~~~-----------~~i~~~~q~~--~~~ 76 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWG---------------SGRIGMPEG-----------EDLLFLPQRP--YLP 76 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------CceEEECCC-----------ceEEEECCCC--ccc
Confidence 589999999999999999999999997665 888877663 2467788887 444
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
..|+.+|+.+. ....+|+|++||+++|||+..+|+++|+|||+.
T Consensus 77 -~~tv~~nl~~~------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~ 120 (166)
T cd03223 77 -LGTLREQLIYP------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATS 120 (166)
T ss_pred -cccHHHHhhcc------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 45888887642 012234599999999999999999999999973
No 288
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.65 E-value=9.9e-17 Score=154.39 Aligned_cols=118 Identities=15% Similarity=0.084 Sum_probs=85.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|. .++|++|.+ .++
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---------------~G~i~~~g~------------~i~~~~q~~--~~~ 73 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVLKPD---------------EGDIEIELD------------TVSYKPQYI--KAD 73 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcCC---------------CCeEEECCc------------eEEEecccc--cCC
Confidence 589999999999999999999999997666 888887774 245667766 445
Q ss_pred cCCCcccCHHHHHHHH---HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCV---ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~---~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...|+.+|+..+.... ......+.+.++.. ...+.....+|+||+||++||+||+.+|.++|+|||+
T Consensus 74 ~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt 143 (246)
T cd03237 74 YEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIE-------QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPS 143 (246)
T ss_pred CCCCHHHHHHHHhhhccccHHHHHHHHHHcCCH-------HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 5678888876543321 11123333333221 1223444456779999999999999999999999996
No 289
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.65 E-value=1e-17 Score=178.73 Aligned_cols=156 Identities=18% Similarity=0.102 Sum_probs=106.4
Q ss_pred CcchhhhHHHHHHHHH---------HHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 84 TPMNYYMNVHIILEKQ---------RSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 84 t~ml~~~nl~~~~~~~---------r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
.+|+++.|+++.|+.. ...+++++ .+|++++|+|+||||||||+|+|+|+. +.
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~------------- 338 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NS------------- 338 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CC-------------
Confidence 4567777777776410 12234443 899999999999999999999999986 35
Q ss_pred CCCCcCCCCCeeecccccc---ccccCCCCcccCceEEEecCCCcccCHHHHHHHH---------HHHHHHHHHhhccCC
Q psy2946 151 VGQGHVSVPGTIGALVIER---PATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV---------ERLWKSVDERMNKDS 218 (455)
Q Consensus 151 pgqG~i~~~G~~~~~~~~~---~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~---------~~l~~~~~~~~~~~~ 218 (455)
+|+|.++|......... ..+..++|++|++...++..+|+.+|+.+..... ...+..+.+.++...
T Consensus 339 --~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 416 (529)
T PRK15134 339 --QGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP 416 (529)
T ss_pred --CcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH
Confidence 89999999754322111 1234578999986324777889999987643211 112233333333210
Q ss_pred CCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 219 KTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 219 ~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...+.+...+|+||+||++||+|+..+|.++|+|||+
T Consensus 417 ------~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 453 (529)
T PRK15134 417 ------ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPT 453 (529)
T ss_pred ------HHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCc
Confidence 1124455566779999999999999999999999996
No 290
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.65 E-value=1.1e-16 Score=151.80 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=89.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|.... ......+|++|++..++.
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~ 63 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPA---------------KGTVKVAGASPG-----KGWRHIGYVPQRHEFAWD 63 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCccch-----HhhCcEEEecccccccCC
Confidence 589999999999999999999999986655 899999987532 123457888988722122
Q ss_pred cCCCcccCHHHHHH-----------HHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 188 GHLTPNANLELYQH-----------CVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 188 g~~sv~~n~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
...++.+|+.+... .....+....+.++... ..+.....+|+||+||++|||++..+|+++|
T Consensus 64 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~qrv~laral~~~p~lli 136 (223)
T TIGR03771 64 FPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTE-------LADRPVGELSGGQRQRVLVARALATRPSVLL 136 (223)
T ss_pred CCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCch-------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 33678888765311 01112233333333221 2344455567799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 137 lDEP~ 141 (223)
T TIGR03771 137 LDEPF 141 (223)
T ss_pred EeCCc
Confidence 99997
No 291
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.65 E-value=7e-17 Score=147.12 Aligned_cols=137 Identities=17% Similarity=0.096 Sum_probs=100.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++|.|+|.||||||||++.|+|.+.++ .|.|.++|...............+-+||+|....+
T Consensus 30 ~~g~FvtViGsNGAGKSTlln~iaG~l~~t---------------~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 30 AEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---------------SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred cCCceEEEEcCCCccHHHHHHHhhCccccC---------------CceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 799999999999999999999999997766 99999999987665444333445668999999999
Q ss_pred cCCCcccCHHHHHHH----------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 188 GHLTPNANLELYQHC----------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 188 g~~sv~~n~~~~~~~----------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
+.+|+.||+.+.... ..+..+.+.+++..... ... -..+++--.+|+||+|-+.++.|....|+|+++
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~l-gLe-nrL~~~iglLSGGQRQalsL~MAtl~~pkiLLL 172 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGL-GLE-NRLSDRIGLLSGGQRQALSLLMATLHPPKILLL 172 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhccc-chh-hhhcChhhhccchHHHHHHHHHHhcCCCcEEEe
Confidence 999999999885432 22233333333322111 000 112233334567999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
||-+
T Consensus 173 DEHT 176 (263)
T COG1101 173 DEHT 176 (263)
T ss_pred cchh
Confidence 9954
No 292
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.65 E-value=2.7e-17 Score=176.28 Aligned_cols=118 Identities=18% Similarity=0.102 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.+++. ..++|++|++ .++
T Consensus 31 ~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~---------------~G~i~~~~~-----------~~i~~v~Q~~--~~~ 82 (556)
T PRK11819 31 FPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---------------EGEARPAPG-----------IKVGYLPQEP--QLD 82 (556)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEecCC-----------CEEEEEecCC--CCC
Confidence 799999999999999999999999997665 788876531 2367889988 678
Q ss_pred cCCCcccCHHHHHHHH-------HH------------------------------------HHHHHHHhhccCCCCCccc
Q psy2946 188 GHLTPNANLELYQHCV-------ER------------------------------------LWKSVDERMNKDSKTNSSG 224 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~------------------------------------l~~~~~~~~~~~~~~~~s~ 224 (455)
..+|+.+|+.+..... .. .+..+.+.+ ...
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------gl~- 155 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL------RCP- 155 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC------CCC-
Confidence 8889999987642110 00 000011111 111
Q ss_pred EEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 225 MIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 225 ~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
..+.+...+|+||+||++||++|..+|.++|+|||+
T Consensus 156 -~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt 191 (556)
T PRK11819 156 -PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPT 191 (556)
T ss_pred -cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 124455567789999999999999999999999996
No 293
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.65 E-value=9.3e-17 Score=152.31 Aligned_cols=126 Identities=18% Similarity=0.154 Sum_probs=92.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|++.+. +|+|.++|..... .. ....+|++|.+ .++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~~~~~~~---~~-~~~~~~~~q~~--~~~ 82 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGILRPT---------------SGEIIFDGHPWTR---KD-LHKIGSLIESP--PLY 82 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEeccc---cc-cccEEEEcCCC--Ccc
Confidence 589999999999999999999999987665 8999988864321 11 13567888887 677
Q ss_pred cCCCcccCHHHHHHHH---HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCV---ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~---~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...|+.+|+.++.... ...+..+.+.++... ..|.....+|+|++||+++|+|+..+|.++|+|||+
T Consensus 83 ~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~ 152 (223)
T TIGR03740 83 ENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTN-------TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT 152 (223)
T ss_pred ccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcH-------HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 7789999987654321 122333344443321 123344456779999999999999999999999996
No 294
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.64 E-value=2.6e-17 Score=164.75 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=89.8
Q ss_pred EEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCccc
Q psy2946 115 IVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNA 194 (455)
Q Consensus 115 IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~ 194 (455)
|+|+||||||||+|+|+|+..++ +|+|.++|...... .+....++|++|++ .+|+++|+.+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---------------~G~I~i~g~~i~~~--~~~~~~i~~v~q~~--~l~~~~tv~e 61 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---------------SGSIMLDGEDVTNV--PPHLRHINMVFQSY--ALFPHMTVEE 61 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---------------ceEEEECCEECCCC--CHHHCCEEEEecCc--cccCCCcHHH
Confidence 68999999999999999997666 89999999754321 12234578999998 7888999999
Q ss_pred CHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 195 NLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 195 n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
|+.+..... ....+.+.+.++... ..+.....+|+||+||++|||||..+|.++|+|||+
T Consensus 62 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~ 128 (325)
T TIGR01187 62 NVAFGLKMRKVPRAEIKPRVLEALRLVQLEE-------FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPL 128 (325)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCcc-------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 998864321 112233333333221 234445566779999999999999999999999995
No 295
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.64 E-value=8.1e-18 Score=178.27 Aligned_cols=133 Identities=18% Similarity=0.057 Sum_probs=93.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc-cccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE-RPATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~-~~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+|+|+|+..+. |.+|+|.++|........ ...+..++|++|++ .+
T Consensus 25 ~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-------------~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~--~~ 89 (500)
T TIGR02633 25 RPGECVGLCGENGAGKSTLMKILSGVYPHG-------------TWDGEIYWSGSPLKASNIRDTERAGIVIIHQEL--TL 89 (500)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCCC-------------CCCeEEEECCEECCCCCHHHHHhCCEEEEeecc--cc
Confidence 689999999999999999999999986531 238999999875432111 11234578999998 67
Q ss_pred ecCCCcccCHHHHHHH-----------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEE
Q psy2946 187 YGHLTPNANLELYQHC-----------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILV 255 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~-----------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vl 255 (455)
+..+|+.+|+.+.... ....+..+.+.++... ...+.+...+|+||+||++||+||..+|.++
T Consensus 90 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~~LSgG~~qrv~iA~al~~~p~ll 163 (500)
T TIGR02633 90 VPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDA------DNVTRPVGDYGGGQQQLVEIAKALNKQARLL 163 (500)
T ss_pred CCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCC------CcccCchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 8888999998764221 1112233333433221 1112333456779999999999999999999
Q ss_pred ecCchh
Q psy2946 256 LDQERL 261 (455)
Q Consensus 256 l~DEpl 261 (455)
|+|||+
T Consensus 164 lLDEPt 169 (500)
T TIGR02633 164 ILDEPS 169 (500)
T ss_pred EEeCCC
Confidence 999995
No 296
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.3e-17 Score=162.45 Aligned_cols=138 Identities=14% Similarity=0.092 Sum_probs=89.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecc----ccccccccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGAL----VIERPATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~----~~~~~~~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+++|+|+..+.+ ..+.+|+|.++|..... .........++|++|++
T Consensus 40 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~----------~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~- 108 (265)
T PRK14252 40 HEKQVTALIGPSGCGKSTFLRCFNRMHDLYP----------GNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKP- 108 (265)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCCCC----------CCCcccEEEEcCccccccccccCHHHHhccEEEEccCC-
Confidence 6899999999999999999999999865320 00137888888753211 00112344578899988
Q ss_pred EEEecCCCcccCHHHHHHHH--------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEE
Q psy2946 184 VYNYGHLTPNANLELYQHCV--------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILV 255 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~~--------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vl 255 (455)
.+|.. |+.+|+.+..... .+......+.++.... . .-..+.....+|+|++||++|||++..+|.++
T Consensus 109 -~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--l-~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 183 (265)
T PRK14252 109 -NPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE--V-KDRLGDLAFNLSGGQQQRLCIARALATDPEIL 183 (265)
T ss_pred -cCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchh--h-hHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 66665 8999997653211 1112222222221100 0 00123334456679999999999999999999
Q ss_pred ecCchh
Q psy2946 256 LDQERL 261 (455)
Q Consensus 256 l~DEpl 261 (455)
|+|||+
T Consensus 184 llDEPt 189 (265)
T PRK14252 184 LFDEPT 189 (265)
T ss_pred EEeCCC
Confidence 999997
No 297
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.3e-17 Score=174.41 Aligned_cols=130 Identities=15% Similarity=0.044 Sum_probs=94.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc-ccccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI-ERPATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~-~~~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|....... ....+...+|++|++ .+
T Consensus 22 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~--~~ 84 (491)
T PRK10982 22 RPHSIHALMGENGAGKSTLLKCLFGIYQKD---------------SGSILFQGKEIDFKSSKEALENGISMVHQEL--NL 84 (491)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCC---------------ceEEEECCEECCCCCHHHHHhCCEEEEeccc--cc
Confidence 589999999999999999999999997666 899999997542211 111234578999988 67
Q ss_pred ecCCCcccCHHHHHHH----------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 187 YGHLTPNANLELYQHC----------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~----------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
+...|+.+|+.+.... ..+.++.+.+.++... ..+.....+|+||+||++||+||..+|+++|
T Consensus 85 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LSgGq~qrv~lA~al~~~p~lll 157 (491)
T PRK10982 85 VLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-------DPRAKVATLSVSQMQMIEIAKAFSYNAKIVI 157 (491)
T ss_pred ccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-------CccCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 8888999998753210 0112233333333211 2344555677799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 158 LDEPt 162 (491)
T PRK10982 158 MDEPT 162 (491)
T ss_pred EeCCC
Confidence 99996
No 298
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.2e-16 Score=156.18 Aligned_cols=129 Identities=16% Similarity=0.093 Sum_probs=85.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|..... .......+|++|++...+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ 92 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMGFVRLA---------------SGKISILGQPTRQ---ALQKNLVAYVPQSEEVDWS 92 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEEhHH---hhccceEEEeccccccccC
Confidence 589999999999999999999999997665 8999999875321 1112246788888621111
Q ss_pred cCCCcccCHHHHH-----------HHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 188 GHLTPNANLELYQ-----------HCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 188 g~~sv~~n~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
...++.+++.+.. ......+..+.+.++... ..+.....+|+|++||++||+|+..+|+++|
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~~~LSgG~~qrv~laraL~~~p~lll 165 (272)
T PRK15056 93 FPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE-------FRHRQIGELSGGQKKRVFLARAIAQQGQVIL 165 (272)
T ss_pred CCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChh-------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2234555553210 011122233333333221 1244445567799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 166 lDEPt 170 (272)
T PRK15056 166 LDEPF 170 (272)
T ss_pred EeCCC
Confidence 99996
No 299
>KOG0056|consensus
Probab=99.63 E-value=4.4e-17 Score=163.22 Aligned_cols=134 Identities=19% Similarity=0.241 Sum_probs=98.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|+.++++||+|+||||++|+|..+ .|+.+|.|+++|+++.......++..+|.++|+. .+|
T Consensus 562 ~pGktvAlVG~SGaGKSTimRlLfRf---------------fdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDt--vLF 624 (790)
T KOG0056|consen 562 QPGKTVALVGPSGAGKSTIMRLLFRF---------------FDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDT--VLF 624 (790)
T ss_pred cCCcEEEEECCCCCchhHHHHHHHHH---------------hhccCceEEEcCchHHHHHHHHHHHhcCcccCcc--eee
Confidence 69999999999999999999999998 4666999999999887777777888899999998 677
Q ss_pred cCCCcccCHHHHHH-----HH--HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQH-----CV--ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~-----~~--~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
.+ |+..|+.+..- .+ ...++.+.++.-.-++... --+.-.|.-+|+|+|||++|||++..+|.++++||.
T Consensus 625 Nd-TI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~--t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEA 701 (790)
T KOG0056|consen 625 ND-TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYN--TRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEA 701 (790)
T ss_pred cc-eeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhh--hhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcch
Confidence 76 78888876421 11 1112222222211111100 011224556677999999999999999999999997
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
.
T Consensus 702 T 702 (790)
T KOG0056|consen 702 T 702 (790)
T ss_pred h
Confidence 5
No 300
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=3.3e-17 Score=173.86 Aligned_cols=156 Identities=13% Similarity=0.022 Sum_probs=104.5
Q ss_pred cchhhhHHHHHHHH-HHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHh-cCCCCCCccEEEecCCCCCcCCC
Q psy2946 85 PMNYYMNVHIILEK-QRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAV-RMPGLNRKPIFVDLDVGQGHVSV 158 (455)
Q Consensus 85 ~ml~~~nl~~~~~~-~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~-~~~~~~~~~~~vDlDpgqG~i~~ 158 (455)
+|+++.|+++.|+. ....+++++ .+|++++|+|+||||||||+|+|+|+.. ++ +|+|.+
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~---------------~G~i~~ 322 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW---------------EGEIFI 322 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---------------CcEEEE
Confidence 46667777776631 012234433 8999999999999999999999999976 35 899998
Q ss_pred CCeeecccc-ccccccCCCCcccCce-EEEecCCCcccCHHHHHH--H----------HHHHHHHHHHhhccCCCCCccc
Q psy2946 159 PGTIGALVI-ERPATIEDGFSQLAPI-VYNYGHLTPNANLELYQH--C----------VERLWKSVDERMNKDSKTNSSG 224 (455)
Q Consensus 159 ~G~~~~~~~-~~~~~~~~~~~~q~p~-~~~~g~~sv~~n~~~~~~--~----------~~~l~~~~~~~~~~~~~~~~s~ 224 (455)
+|....... ....+..++|++|.+. ..++..+|+.+|+.+... . ....+..+.++++.. .
T Consensus 323 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~ 396 (506)
T PRK13549 323 DGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVK------T 396 (506)
T ss_pred CCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCcc------C
Confidence 886432111 1112345789999852 136677899999875321 1 011223333444321 1
Q ss_pred EEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 225 MIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 225 ~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...|.+...+|+||+||++||+||..+|.++|+|||+
T Consensus 397 ~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt 433 (506)
T PRK13549 397 ASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPT 433 (506)
T ss_pred CCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 1234455567779999999999999999999999997
No 301
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.63 E-value=3.1e-17 Score=174.66 Aligned_cols=158 Identities=22% Similarity=0.096 Sum_probs=103.4
Q ss_pred cchhhhHHHHHHHH---HHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCC
Q psy2946 85 PMNYYMNVHIILEK---QRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVS 157 (455)
Q Consensus 85 ~ml~~~nl~~~~~~---~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~ 157 (455)
+|+++.|+++.|++ ....+++++ .+|++++|+|+||||||||+|+|+|+..++ +|+|.
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---------------~G~i~ 342 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---------------SGEVN 342 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CeEEE
Confidence 45666666665531 111233332 799999999999999999999999997666 78888
Q ss_pred CC-Cee---ecccc---ccccccCCCCcccCceEEEecCCCcccCHHHHHHH------HHHHHHHHHHhhccCCCCCccc
Q psy2946 158 VP-GTI---GALVI---ERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHC------VERLWKSVDERMNKDSKTNSSG 224 (455)
Q Consensus 158 ~~-G~~---~~~~~---~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~------~~~l~~~~~~~~~~~~~~~~s~ 224 (455)
++ |.. ..... ....+..++|++|++ .++..+|+.+|+.+.... ....+..+.+.++..... ..
T Consensus 343 ~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~ 418 (520)
T TIGR03269 343 VRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY--DLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK--AE 418 (520)
T ss_pred EecCCccccccccchhhHHHHhhhEEEEccCc--ccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc--ch
Confidence 74 421 11100 001233578999987 678888999999764321 111223333444332100 00
Q ss_pred EEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 225 MIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 225 ~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
-..+.+...+|+||+||++||+|+..+|.++|+|||+
T Consensus 419 ~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt 455 (520)
T TIGR03269 419 EILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPT 455 (520)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1235566677889999999999999999999999997
No 302
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.63 E-value=5.1e-17 Score=190.64 Aligned_cols=163 Identities=18% Similarity=0.234 Sum_probs=116.5
Q ss_pred cEEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccE
Q psy2946 66 CSITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPI 145 (455)
Q Consensus 66 ~~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~ 145 (455)
..|++++ ..+.|..+..+.+ .|+++.+ ++|++++|||++|||||||+++|+++.. .
T Consensus 1216 g~I~f~n--Vs~~Y~~~~~~vL--~~is~~I-----------~~GekvaIvGrSGsGKSTLl~lL~rl~~-~-------- 1271 (1490)
T TIGR01271 1216 GQMDVQG--LTAKYTEAGRAVL--QDLSFSV-----------EGGQRVGLLGRTGSGKSTLLSALLRLLS-T-------- 1271 (1490)
T ss_pred CeEEEEE--EEEEeCCCCccee--eccEEEE-----------cCCCEEEEECCCCCCHHHHHHHHhhhcC-C--------
Confidence 3588885 8888865444443 3333322 6999999999999999999999999963 4
Q ss_pred EEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCC----C
Q psy2946 146 FVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKT----N 221 (455)
Q Consensus 146 ~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~----~ 221 (455)
+|+|.++|........+.++..+++++|+| ++|.. |+++|+..+.....+......++.+..... .
T Consensus 1272 -------~G~I~IdG~di~~i~~~~lR~~is~IpQdp--~LF~G-TIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~ 1341 (1490)
T TIGR01271 1272 -------EGEIQIDGVSWNSVTLQTWRKAFGVIPQKV--FIFSG-TFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPD 1341 (1490)
T ss_pred -------CcEEEECCEEcccCCHHHHHhceEEEeCCC--ccCcc-CHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcc
Confidence 899999999877666666778899999999 77776 999999865432222222333333221110 1
Q ss_pred cccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 222 SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 222 ~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
.....+.-.|-.+|+||+||++|||||..+++|+|+||++.
T Consensus 1342 GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS 1382 (1490)
T TIGR01271 1342 KLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSA 1382 (1490)
T ss_pred ccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence 11122333456678899999999999999999999999963
No 303
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.63 E-value=5e-17 Score=174.15 Aligned_cols=124 Identities=17% Similarity=0.096 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|...++ +|+|.+++. ..++|++|++ .++
T Consensus 29 ~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---------------~G~i~~~~~-----------~~i~~v~Q~~--~~~ 80 (552)
T TIGR03719 29 FPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---------------NGEARPAPG-----------IKVGYLPQEP--QLD 80 (552)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEecCC-----------CEEEEEeccC--CCC
Confidence 699999999999999999999999997665 788876541 2468889988 678
Q ss_pred cCCCcccCHHHHHHHHH-------HH--------H---------HHHHH---hhc---------c-CCCCCcccEEEecC
Q psy2946 188 GHLTPNANLELYQHCVE-------RL--------W---------KSVDE---RMN---------K-DSKTNSSGMIINTC 230 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~-------~l--------~---------~~~~~---~~~---------~-~~~~~~s~~iint~ 230 (455)
.++|+.+|+.+...... .. . ..+.+ .++ . ....... ..+.+
T Consensus 81 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~ 158 (552)
T TIGR03719 81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP--PWDAD 158 (552)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC--cccCc
Confidence 88899999876321100 00 0 00000 000 0 0000111 12455
Q ss_pred CCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 231 GWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 231 g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...+|+||+||++||++|..+|+++|+|||+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt 189 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPT 189 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 5667889999999999999999999999996
No 304
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2e-16 Score=152.72 Aligned_cols=137 Identities=14% Similarity=0.142 Sum_probs=92.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC-CCCCcCCCCCeeeccccc--cccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD-VGQGHVSVPGTIGALVIE--RPATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD-pgqG~i~~~G~~~~~~~~--~~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+++|+|+..+. .+ |.+|+|.++|........ ...+...+|++|++
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~-----------~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~-- 95 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRMNDFV-----------PNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKP-- 95 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccC-----------CCCCcceEEEECCEehHhcccchHHHhhhEEEEecCc--
Confidence 589999999999999999999999986411 00 238999999874322111 12345678999988
Q ss_pred EEecCCCcccCHHHHHHH---------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEE
Q psy2946 185 YNYGHLTPNANLELYQHC---------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILV 255 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~---------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vl 255 (455)
.+|.. ++.+|+.+.... .......+.+.++..... ....+..+..+|+||+||++|||++..+|+++
T Consensus 96 ~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 171 (251)
T PRK14244 96 NPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL---GDRLKDSAFELSGGQQQRLCIARAIAVKPTML 171 (251)
T ss_pred ccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh---hhHhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 56664 899998764321 111122233333321100 00124455667789999999999999999999
Q ss_pred ecCchh
Q psy2946 256 LDQERL 261 (455)
Q Consensus 256 l~DEpl 261 (455)
|+|||+
T Consensus 172 llDEPt 177 (251)
T PRK14244 172 LMDEPC 177 (251)
T ss_pred EEeCCC
Confidence 999997
No 305
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.63 E-value=3.1e-17 Score=174.93 Aligned_cols=140 Identities=14% Similarity=0.033 Sum_probs=93.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc----ccccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER----PATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~----~~~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+|+|+|++.+. ... |.+|+|.++|......... .....++|++|++.
T Consensus 33 ~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~---~~~-------~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~ 102 (529)
T PRK15134 33 EAGETLALVGESGSGKSVTALSILRLLPSP---PVV-------YPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM 102 (529)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCC---cCC-------ccceEEEECCEecccCCHHHHHHHhcCceEEEecCch
Confidence 689999999999999999999999997642 000 1389999999864322111 11235789999873
Q ss_pred EEEecCCCcccCHHHHHHH--------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEE
Q psy2946 184 VYNYGHLTPNANLELYQHC--------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILV 255 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~--------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vl 255 (455)
..++..+++.+|+.+.... ....++.+.+.++..... ...+.....+|+||+||++||+||..+|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----~~~~~~~~~LSgGe~qrv~iAraL~~~p~ll 178 (529)
T PRK15134 103 VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA----KRLTDYPHQLSGGERQRVMIAMALLTRPELL 178 (529)
T ss_pred hhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH----HHHhhCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 2356667888877643221 112223333443332100 0123344556779999999999999999999
Q ss_pred ecCchh
Q psy2946 256 LDQERL 261 (455)
Q Consensus 256 l~DEpl 261 (455)
|+|||+
T Consensus 179 llDEPt 184 (529)
T PRK15134 179 IADEPT 184 (529)
T ss_pred EEcCCC
Confidence 999995
No 306
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.63 E-value=1.5e-17 Score=195.27 Aligned_cols=153 Identities=18% Similarity=0.091 Sum_probs=111.8
Q ss_pred CcchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCC
Q psy2946 84 TPMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVP 159 (455)
Q Consensus 84 t~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~ 159 (455)
+.|+++.|+++.|++....+++++ .+|++++|+|+||||||||+|+|+|...++ +|+|.+.
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---------------sG~I~i~ 1999 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---------------SGDATVA 1999 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---------------ccEEEEC
Confidence 346777777777753223355553 899999999999999999999999997766 9999999
Q ss_pred CeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCC
Q psy2946 160 GTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGW 232 (455)
Q Consensus 160 G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~ 232 (455)
|...... ....+..+||++|.+ .++..+|++||+.++.... ++..+.+.+.++... ..|....
T Consensus 2000 G~~i~~~-~~~~r~~IGy~pQ~~--~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~-------~~dk~~~ 2069 (2272)
T TIGR01257 2000 GKSILTN-ISDVHQNMGYCPQFD--AIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSL-------YADRLAG 2069 (2272)
T ss_pred CEECcch-HHHHhhhEEEEeccc--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-------HhcCChh
Confidence 9865321 112345689999988 7888999999999876542 122233334333221 1233444
Q ss_pred ccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 233 IKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 233 ~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.+|+|+|||+++|+|+..+|+|+++|||+
T Consensus 2070 ~LSGGqKqRLslA~ALi~~P~VLLLDEPT 2098 (2272)
T TIGR01257 2070 TYSGGNKRKLSTAIALIGCPPLVLLDEPT 2098 (2272)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 56679999999999999999999999995
No 307
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.63 E-value=5.9e-17 Score=171.70 Aligned_cols=156 Identities=13% Similarity=0.002 Sum_probs=103.8
Q ss_pred cchhhhHHHHHHHHH-HHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhc-CCCCCCccEEEecCCCCCcCCC
Q psy2946 85 PMNYYMNVHIILEKQ-RSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVR-MPGLNRKPIFVDLDVGQGHVSV 158 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~-r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~-~~~~~~~~~~vDlDpgqG~i~~ 158 (455)
+|+++.|+++.|... ...++++. .+|++++|+|+||||||||+|+|+|+..+ . +|+|.+
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---------------~G~i~~ 320 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF---------------EGNVFI 320 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---------------CeEEEE
Confidence 356667777666210 11234432 79999999999999999999999999763 4 899999
Q ss_pred CCeeecccc-ccccccCCCCcccCce-EEEecCCCcccCHHHHHH--H----------HHHHHHHHHHhhccCCCCCccc
Q psy2946 159 PGTIGALVI-ERPATIEDGFSQLAPI-VYNYGHLTPNANLELYQH--C----------VERLWKSVDERMNKDSKTNSSG 224 (455)
Q Consensus 159 ~G~~~~~~~-~~~~~~~~~~~~q~p~-~~~~g~~sv~~n~~~~~~--~----------~~~l~~~~~~~~~~~~~~~~s~ 224 (455)
+|....... ....+..++|++|++. ..+++.+|+.+|+.+... . ....+..+.++++.. .
T Consensus 321 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~ 394 (500)
T TIGR02633 321 NGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK------T 394 (500)
T ss_pred CCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCcc------C
Confidence 887532110 1122345789998852 136777899988865321 1 011123333443321 1
Q ss_pred EEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 225 MIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 225 ~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...|.+...+|+||+||++||+|+..+|.++|+|||+
T Consensus 395 ~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt 431 (500)
T TIGR02633 395 ASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT 431 (500)
T ss_pred CCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 1234555667789999999999999999999999997
No 308
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.62 E-value=1.3e-16 Score=155.07 Aligned_cols=117 Identities=21% Similarity=0.233 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|.... ..+.+ .++
T Consensus 48 ~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---------------~G~I~~~g~~~~-------------~~~~~--~~~ 97 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLSNIIGGSLSPT---------------VGKVDRNGEVSV-------------IAISA--GLS 97 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCC---------------ceEEEECCEEeE-------------Eeccc--CCC
Confidence 899999999999999999999999997666 888888885321 12233 344
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+.+|+.+|+.+..... ....+.+.+.++.. ..++...-.+|+||+||++||+|+..+|.++|+|||
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEP 170 (264)
T PRK13546 98 GQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG-------EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEA 170 (264)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-------hhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCc
Confidence 5667888876532211 11112222222211 223445556677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 171 t 171 (264)
T PRK13546 171 L 171 (264)
T ss_pred c
Confidence 6
No 309
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=5e-17 Score=173.38 Aligned_cols=120 Identities=17% Similarity=0.060 Sum_probs=84.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|++.++ +|+|.++|. ..++|++|.+ .++
T Consensus 25 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---------------~G~i~~~~~-----------~~i~~~~q~~--~~~ 76 (530)
T PRK15064 25 GGGNRYGLIGANGCGKSTFMKILGGDLEPS---------------AGNVSLDPN-----------ERLGKLRQDQ--FAF 76 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEecCC-----------CEEEEEeccC--CcC
Confidence 689999999999999999999999987665 888877652 1257788887 677
Q ss_pred cCCCcccCHHHHHHHH---------------------------------------HHHHHHHHHhhccCCCCCcccEEEe
Q psy2946 188 GHLTPNANLELYQHCV---------------------------------------ERLWKSVDERMNKDSKTNSSGMIIN 228 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~---------------------------------------~~l~~~~~~~~~~~~~~~~s~~iin 228 (455)
...|+.+|+.+..... ...+..+.+.++.. ....+
T Consensus 77 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~ 150 (530)
T PRK15064 77 EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIP------EEQHY 150 (530)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC------hhHhc
Confidence 7889988876532100 00111112222211 11112
Q ss_pred cCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 229 TCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 229 t~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.+...+|+||+||++||++|..+|.++|+|||+
T Consensus 151 ~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt 183 (530)
T PRK15064 151 GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPT 183 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 233456779999999999999999999999996
No 310
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.62 E-value=7.7e-17 Score=146.53 Aligned_cols=131 Identities=16% Similarity=0.060 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+||+++|+||||||||||+|.|+|.+.++ .|++.++|..........+....+..+|+.- +-
T Consensus 25 ~pGev~ailGPNGAGKSTlLk~LsGel~p~---------------~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~--la 87 (259)
T COG4559 25 RPGEVLAILGPNGAGKSTLLKALSGELSPD---------------SGEVTLNGVPLNSWPPEELARHRAVLPQNSS--LA 87 (259)
T ss_pred cCCcEEEEECCCCccHHHHHHHhhCccCCC---------------CCeEeeCCcChhhCCHHHHHHHhhhcccCcc--cc
Confidence 799999999999999999999999998766 8999999986555443333344566666542 21
Q ss_pred cCCCcccCHHHHHHH---------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCC------CE
Q psy2946 188 GHLTPNANLELYQHC---------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRV------DN 252 (455)
Q Consensus 188 g~~sv~~n~~~~~~~---------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~------~~ 252 (455)
...++.|-+.+...- ..+.++...++.+..... + ..-..+|+|++||+.+||.|+. +.
T Consensus 88 FpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la---~----R~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 88 FPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA---G----RDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred cceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhh---c----cchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 122676666654322 122344444433221111 1 1122345699999999999964 45
Q ss_pred EEEecCchhh
Q psy2946 253 ILVLDQERLY 262 (455)
Q Consensus 253 ~vll~DEpl~ 262 (455)
.++++|||+.
T Consensus 161 r~L~LDEPts 170 (259)
T COG4559 161 RWLFLDEPTS 170 (259)
T ss_pred ceEEecCCcc
Confidence 5889999973
No 311
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.62 E-value=3e-17 Score=170.43 Aligned_cols=150 Identities=19% Similarity=0.230 Sum_probs=97.3
Q ss_pred cceeeeecCCcchhhhHHHHHHHHHH-HHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEec
Q psy2946 75 KNMTYVSKETPMNYYMNVHIILEKQR-SEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDL 149 (455)
Q Consensus 75 ~~~~y~~~~t~ml~~~nl~~~~~~~r-~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDl 149 (455)
....|...+.+|+.+.|+++.+++.. ..++++. .+|++++|+|+||||||||+++|+|+..+.
T Consensus 10 ~tk~y~~~~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~------------ 77 (549)
T PRK13545 10 VTKKYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN------------ 77 (549)
T ss_pred eeeeccccccceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC------------
Confidence 44445444455666666665554321 1233332 799999999999999999999999997666
Q ss_pred CCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCc
Q psy2946 150 DVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNS 222 (455)
Q Consensus 150 DpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~ 222 (455)
+|+|.++|.... ....+ .+++.+|+.+|+.+.... ..+....+.+.++..
T Consensus 78 ---sGeI~I~G~~~~-------------i~~~~--~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~----- 134 (549)
T PRK13545 78 ---KGTVDIKGSAAL-------------IAISS--GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIG----- 134 (549)
T ss_pred ---ceEEEECCEeee-------------EEecc--ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCCh-----
Confidence 899988886421 00111 345557888888763321 111122233333221
Q ss_pred ccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 223 SGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 223 s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...+.+...+|+||+||++||+||..+|.++|+|||+
T Consensus 135 --~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPT 171 (549)
T PRK13545 135 --KFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEAL 171 (549)
T ss_pred --hHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 1234445566779999999999999999999999996
No 312
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.61 E-value=4.2e-17 Score=157.14 Aligned_cols=131 Identities=17% Similarity=0.059 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH--hcCCCCCCccEEEecCCCCCcCCCCCeeecccccc-ccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA--VRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER-PATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~--~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~-~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+|+|+|+. .+. +|+|.++|......... ..+...+|++|++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---------------~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~-- 87 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---------------GGTVEFKGKDLLELSPEDRAGEGIFMAFQYP-- 87 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCccCCCC---------------ceEEEECCCccccCCHHHHhhcceEEEecCc--
Confidence 589999999999999999999999984 344 89999988643221111 1123467788887
Q ss_pred EEecCCCcccCHHHHHHHH--------------HHHHHHHHHhhccCCCCCcccEEEecCCC-ccCCcHHHHHHHHHHcC
Q psy2946 185 YNYGHLTPNANLELYQHCV--------------ERLWKSVDERMNKDSKTNSSGMIINTCGW-IKGDGFKCLMACAKSLR 249 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~--------------~~l~~~~~~~~~~~~~~~~s~~iint~g~-~~s~G~~q~~~ia~al~ 249 (455)
.+++..+...+........ ....+...+.++.. .-..+.... .+|+||+||++||||+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~~~LS~G~~qrv~laral~ 161 (248)
T PRK09580 88 VEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMP------EDLLTRSVNVGFSGGEKKRNDILQMAV 161 (248)
T ss_pred hhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCC------hhhcccCCCCCCCHHHHHHHHHHHHHH
Confidence 5555544333222111000 01111122222211 001122222 46779999999999999
Q ss_pred CCEEEEecCchh
Q psy2946 250 VDNILVLDQERL 261 (455)
Q Consensus 250 ~~~~vll~DEpl 261 (455)
.+|.++|+|||+
T Consensus 162 ~~p~illLDEPt 173 (248)
T PRK09580 162 LEPELCILDESD 173 (248)
T ss_pred cCCCEEEEeCCC
Confidence 999999999997
No 313
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.61 E-value=2e-16 Score=184.62 Aligned_cols=162 Identities=13% Similarity=0.152 Sum_probs=106.5
Q ss_pred EEEEEeeccceeeeecC-CcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccE
Q psy2946 67 SITMKNARKNMTYVSKE-TPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPI 145 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~-t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~ 145 (455)
.|++++ ..+.|.... .+++ .|+++.+ ++|++++|+|+||||||||+++|+|+..++
T Consensus 382 ~I~~~n--Vsf~Y~~~~~~~vL--~~isl~i-----------~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~-------- 438 (1466)
T PTZ00265 382 KIQFKN--VRFHYDTRKDVEIY--KDLNFTL-----------TEGKTYAFVGESGCGKSTILKLIERLYDPT-------- 438 (1466)
T ss_pred cEEEEE--EEEEcCCCCCCcee--ccceEEE-----------cCCCEEEEECCCCCCHHHHHHHHHHhccCC--------
Confidence 467775 667775422 2233 3333322 699999999999999999999999996555
Q ss_pred EEecCCCCCcCCCC-CeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHH----------------------
Q psy2946 146 FVDLDVGQGHVSVP-GTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHC---------------------- 202 (455)
Q Consensus 146 ~vDlDpgqG~i~~~-G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~---------------------- 202 (455)
+|+|.++ |..........++..+++++|+| .+|.. |+.+|+.+....
T Consensus 439 -------~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~--~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (1466)
T PTZ00265 439 -------EGDIIINDSHNLKDINLKWWRSKIGVVSQDP--LLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENK 508 (1466)
T ss_pred -------CCeEEEeCCcchhhCCHHHHHHhccEecccc--cchhc-cHHHHHHhcCCCccccchhccccccccccccccc
Confidence 9999994 55433322234556789999999 77764 999999874210
Q ss_pred ------------------------------------HHHHHHHHHHhhccCCC----CCcccEEEecCCCccCCcHHHHH
Q psy2946 203 ------------------------------------VERLWKSVDERMNKDSK----TNSSGMIINTCGWIKGDGFKCLM 242 (455)
Q Consensus 203 ------------------------------------~~~l~~~~~~~~~~~~~----~~~s~~iint~g~~~s~G~~q~~ 242 (455)
..+......++++.... .....-.++..|..+|+||+||+
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRi 588 (1466)
T PTZ00265 509 NKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRI 588 (1466)
T ss_pred cccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHH
Confidence 00011111112211110 01111234445677888999999
Q ss_pred HHHHHcCCCEEEEecCchh
Q psy2946 243 ACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 243 ~ia~al~~~~~vll~DEpl 261 (455)
+||||+..+|+|+|+|||+
T Consensus 589 aIARAll~~P~ILlLDEpT 607 (1466)
T PTZ00265 589 SIARAIIRNPKILILDEAT 607 (1466)
T ss_pred HHHHHHhcCCCEEEEeCcc
Confidence 9999999999999999996
No 314
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.61 E-value=1.5e-17 Score=195.34 Aligned_cols=152 Identities=19% Similarity=0.125 Sum_probs=110.1
Q ss_pred cchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
+++++.|+++.|++..+.++++. .+|++++|+|+||||||||+|+|+|+..++ +|+|.++|
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---------------sG~I~i~G 991 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---------------SGTVLVGG 991 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---------------ceEEEECC
Confidence 35666677766642112344443 799999999999999999999999998766 89999999
Q ss_pred eeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCc
Q psy2946 161 TIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWI 233 (455)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~ 233 (455)
...... ....+..+++++|.+ .++..+|+.+|+.++.... ++.++.+.+.++... ..|.....
T Consensus 992 ~dI~~~-~~~~r~~IG~~pQ~~--~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~-------~~~~~~~~ 1061 (2272)
T TIGR01257 992 KDIETN-LDAVRQSLGMCPQHN--ILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHH-------KRNEEAQD 1061 (2272)
T ss_pred EECcch-HHHHhhcEEEEecCC--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-------hhcCChhh
Confidence 865322 122345678999998 7889999999999876532 112233344443321 12344455
Q ss_pred cCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 234 KGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 234 ~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+|+||+||++||+||..+|+|+|+|||+
T Consensus 1062 LSGGqKQRLsLArALi~~PkVLLLDEPT 1089 (2272)
T TIGR01257 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPT 1089 (2272)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 6779999999999999999999999995
No 315
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.61 E-value=7.1e-16 Score=132.93 Aligned_cols=132 Identities=18% Similarity=0.159 Sum_probs=99.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|+++-++||+|||||||+..+.|.+... .. + +|++.++++.....+. ....+|+.||++ .+|
T Consensus 26 a~GeivtlMGPSGcGKSTLls~~~G~La~~---F~--~-------~G~~~l~~~~l~~lPa--~qRq~GiLFQD~--lLF 89 (213)
T COG4136 26 AKGEIVTLMGPSGCGKSTLLSWMIGALAGQ---FS--C-------TGELWLNEQRLDMLPA--AQRQIGILFQDA--LLF 89 (213)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhhcccC---cc--e-------eeEEEECCeeccccch--hhhheeeeeccc--ccc
Confidence 589999999999999999999999998654 11 1 6888888876554433 234589999999 899
Q ss_pred cCCCcccCHHHHHH------HHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQH------CVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~------~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+++++.+|+.|.+. ..++.+....++.+.+.. .+..+-..|+||+-|+++.|+|...|+.+++|||+
T Consensus 90 phlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~-------f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPF 162 (213)
T COG4136 90 PHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGA-------FHQDPATLSGGQRARVALLRALLAQPKALLLDEPF 162 (213)
T ss_pred cccccccceEEecCcccccHHHHhhHHHHHHHhccchh-------hhcChhhcCcchHHHHHHHHHHHhCcceeeeCCch
Confidence 99999999987542 234444555555443322 12233445679999999999999999999999998
Q ss_pred h
Q psy2946 262 Y 262 (455)
Q Consensus 262 ~ 262 (455)
.
T Consensus 163 S 163 (213)
T COG4136 163 S 163 (213)
T ss_pred h
Confidence 4
No 316
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=5.2e-17 Score=173.26 Aligned_cols=143 Identities=16% Similarity=0.052 Sum_probs=99.1
Q ss_pred cchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
+|+++.|+++.|++ ..++++. .+|++++|+||||||||||+|+|+|+..++ +|+|.++|
T Consensus 318 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---------------~G~i~~~~ 380 (530)
T PRK15064 318 NALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---------------SGTVKWSE 380 (530)
T ss_pred ceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CeEEEECC
Confidence 35666666666643 2233332 799999999999999999999999997666 78887766
Q ss_pred eeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHH--HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcH
Q psy2946 161 TIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHC--VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGF 238 (455)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~--~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~ 238 (455)
. ..++|++|++...++...++.+|+.++... ....+..+.+.++.. ....|.+...+|+||
T Consensus 381 ~-----------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~~LSgGq 443 (530)
T PRK15064 381 N-----------ANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS------QDDIKKSVKVLSGGE 443 (530)
T ss_pred c-----------eEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC------hhHhcCcccccCHHH
Confidence 3 236788887632356678888887653210 112233333443321 112345566677899
Q ss_pred HHHHHHHHHcCCCEEEEecCchh
Q psy2946 239 KCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 239 ~q~~~ia~al~~~~~vll~DEpl 261 (455)
+||++||+++..+|.++|+|||+
T Consensus 444 ~qrv~la~al~~~p~lllLDEPt 466 (530)
T PRK15064 444 KGRMLFGKLMMQKPNVLVMDEPT 466 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999999999999999999997
No 317
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.61 E-value=3.5e-16 Score=147.43 Aligned_cols=117 Identities=15% Similarity=0.057 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCC-CCCeeeccccccccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVS-VPGTIGALVIERPATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~-~~G~~~~~~~~~~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+||||||||||+|+|+|+..+. +|+|. ++|... . +.+.+ .+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---------------sG~i~~~~~~~~----------~---~~~~~--~l 60 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDAPD---------------EGDFIGLRGDAL----------P---LGANS--FI 60 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccCC---------------CCCEEEecCcee----------c---ccccc--cc
Confidence 689999999999999999999999997666 78875 555321 0 11234 67
Q ss_pred ecCCCcccCHHHHHHHHH----HHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 187 YGHLTPNANLELYQHCVE----RLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~~~----~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
++.+|+.+|+.++..... +..+.+.+..+.. ...|.+....|+||+||+++|+|+..+|.++|+|||+
T Consensus 61 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~ 132 (213)
T PRK15177 61 LPGLTGEENARMMASLYGLDGDEFSHFCYQLTQLE-------QCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKL 132 (213)
T ss_pred CCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHhChh-------HHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 888899999988654321 1111111111111 1124444556779999999999999999999999996
No 318
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.60 E-value=2.3e-17 Score=175.58 Aligned_cols=130 Identities=19% Similarity=0.112 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH--hcCCCCCCccEEEecCCCCCcCCCC-----------------------Cee
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA--VRMPGLNRKPIFVDLDVGQGHVSVP-----------------------GTI 162 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~--~~~~~~~~~~~~vDlDpgqG~i~~~-----------------------G~~ 162 (455)
.+|++++|+|+||||||||+|+|+|+. .++ +|+|.++ |..
T Consensus 24 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---------------~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 88 (520)
T TIGR03269 24 EEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---------------SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGT 88 (520)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---------------ceEEEEecccccccccccccccccccccccccc
Confidence 589999999999999999999999986 354 5555443 111
Q ss_pred ec-------cccc---cccccCCCCcccC-ceEEEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCccc
Q psy2946 163 GA-------LVIE---RPATIEDGFSQLA-PIVYNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSG 224 (455)
Q Consensus 163 ~~-------~~~~---~~~~~~~~~~~q~-p~~~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~ 224 (455)
.. .... ...+..++|++|+ + .+++.+++.+|+.+..... ...+..+.+.++...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------ 160 (520)
T TIGR03269 89 LEPEEVDFWNLSDKLRRRIRKRIAIMLQRTF--ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH------ 160 (520)
T ss_pred ccccchhhhccCHHHHHHhhhcEEEEecccc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh------
Confidence 00 0000 0123446888996 4 5677789999987643221 122333344443321
Q ss_pred EEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 225 MIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 225 ~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
..+.....+|+||+||++||+||..+|.++|+|||+
T Consensus 161 -~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt 196 (520)
T TIGR03269 161 -RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPT 196 (520)
T ss_pred -hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCc
Confidence 123344456679999999999999999999999995
No 319
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.60 E-value=2.8e-17 Score=178.92 Aligned_cols=130 Identities=22% Similarity=0.139 Sum_probs=96.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc----cccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP----ATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~----~~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+++|+|+..++ +|++.++|........+. .+...+|++|++
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---------------~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~- 95 (648)
T PRK10535 32 YAGEMVAIVGASGSGKSTLMNILGCLDKPT---------------SGTYRVAGQDVATLDADALAQLRREHFGFIFQRY- 95 (648)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------CeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCc-
Confidence 699999999999999999999999996655 899999998544322111 134578999998
Q ss_pred EEEecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 184 VYNYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.+|.+.|+.+|+.+.... ....+.++.+.++.. ...|.....+|+||+||++|||+|..+|+++|
T Consensus 96 -~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~-------~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLl 167 (648)
T PRK10535 96 -HLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLE-------DRVEYQPSQLSGGQQQRVSIARALMNGGQVIL 167 (648)
T ss_pred -ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 888888999998764321 111222333333221 12455566678899999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 168 lDEP~ 172 (648)
T PRK10535 168 ADEPT 172 (648)
T ss_pred EECCC
Confidence 99995
No 320
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.60 E-value=1.5e-16 Score=148.25 Aligned_cols=150 Identities=15% Similarity=0.030 Sum_probs=90.9
Q ss_pred chhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCe
Q psy2946 86 MNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGT 161 (455)
Q Consensus 86 ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~ 161 (455)
++++.|++..|++ +.++.++ .+|+..+|+|+||||||||++++++...+. .|.+.+-|.
T Consensus 31 li~l~~v~v~r~g--k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---------------sg~~~~~G~ 93 (257)
T COG1119 31 LIELKNVSVRRNG--KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---------------SGDVTLLGR 93 (257)
T ss_pred eEEecceEEEECC--EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---------------CCceeeeee
Confidence 3444555544444 3334433 799999999999999999999999998776 566666555
Q ss_pred eeccccc-cccccCCCCccc--------------CceEEEecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEE
Q psy2946 162 IGALVIE-RPATIEDGFSQL--------------APIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMI 226 (455)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~~q--------------~p~~~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~i 226 (455)
..-.... ..++..+|++.. --++.||....+..+ -+.......+..+.+.++... .
T Consensus 94 ~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~--~~~~~~~~~a~~lle~~g~~~-------l 164 (257)
T COG1119 94 RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQE--DLTAEDLAAAQWLLELLGAKH-------L 164 (257)
T ss_pred eccCCcchHHHHHHhCccCHHHHhhcccccccceeeeeccccccccccc--CCCHHHHHHHHHHHHHcchhh-------h
Confidence 3222111 234455666531 122445554444332 111112223334444443322 1
Q ss_pred EecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 227 INTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 227 int~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.|-+--.+|.|+++|+.||||++.+|.++|+|||+
T Consensus 165 a~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~ 199 (257)
T COG1119 165 ADRPFGSLSQGEQRRVLIARALVKDPELLILDEPA 199 (257)
T ss_pred ccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcc
Confidence 22233345669999999999999999999999997
No 321
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.60 E-value=3.1e-16 Score=154.42 Aligned_cols=133 Identities=21% Similarity=0.114 Sum_probs=96.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc---ccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER---PATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~---~~~~~~~~~~q~p~~ 184 (455)
.+|+.++|+|++|||||||-+.|+.++.+ +|+|.+.|+.......+ |++.....+||+|+.
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s----------------~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPyg 374 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPS----------------QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYG 374 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCc----------------CceEEECCccccccChhhhhhhhhhceEEEeCCCC
Confidence 79999999999999999999999998643 69999999976554433 667778899999944
Q ss_pred EEecCCCcccCHHHHHHHHH---------HHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEE
Q psy2946 185 YNYGHLTPNANLELYQHCVE---------RLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILV 255 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~~---------~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vl 255 (455)
.+.+.+|+.+-+.-.+...+ +......+.+ .+.+...|-.+...|+||+||++||||+..+|.++
T Consensus 375 SLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EV------GLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i 448 (534)
T COG4172 375 SLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEV------GLDPATRNRYPHEFSGGQRQRIAIARALILKPELI 448 (534)
T ss_pred CCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHc------CCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEE
Confidence 44444444443433333211 1122222223 33444456667778889999999999999999999
Q ss_pred ecCchhh
Q psy2946 256 LDQERLY 262 (455)
Q Consensus 256 l~DEpl~ 262 (455)
++|||+.
T Consensus 449 ~LDEPTS 455 (534)
T COG4172 449 LLDEPTS 455 (534)
T ss_pred EecCCch
Confidence 9999974
No 322
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.60 E-value=2.5e-16 Score=154.44 Aligned_cols=123 Identities=19% Similarity=0.231 Sum_probs=83.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|++.+. +|+|.++|. ++|++|.+ .++
T Consensus 61 ~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---------------~G~I~i~g~-------------i~yv~q~~--~l~ 110 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLMLILGELEPS---------------EGKIKHSGR-------------ISFSSQFS--WIM 110 (282)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CcEEEECCE-------------EEEEeCcc--ccc
Confidence 699999999999999999999999987655 888887773 46677777 566
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCC----CCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDS----KTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~----~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.. |+.+|+.+.............+..+... ........++..+..+|+||+||++||+++..+|.++|+|||+
T Consensus 111 ~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt 187 (282)
T cd03291 111 PG-TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (282)
T ss_pred cc-CHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 54 8888876532110000011111111100 0000011233444567789999999999999999999999997
No 323
>PLN03211 ABC transporter G-25; Provisional
Probab=99.60 E-value=2.5e-16 Score=171.06 Aligned_cols=149 Identities=17% Similarity=0.117 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecc
Q psy2946 90 MNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGAL 165 (455)
Q Consensus 90 ~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~ 165 (455)
.|+++.|++ +.++++. ++|++++|+||||||||||+++|+|...+. ..+|+|.++|.....
T Consensus 72 ~~l~~~~~~--~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~-------------~~sG~I~inG~~~~~ 136 (659)
T PLN03211 72 SDETRQIQE--RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-------------NFTGTILANNRKPTK 136 (659)
T ss_pred ccccccCCC--CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC-------------ceeEEEEECCEECch
Confidence 345555543 3345553 899999999999999999999999986432 127999999975321
Q ss_pred ccccccccCCCCcccCceEEEecCCCcccCHHHHHHHH----------HHHHHHHHHhhccCCCCCcccEEEecCCCccC
Q psy2946 166 VIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV----------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKG 235 (455)
Q Consensus 166 ~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~----------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s 235 (455)
......+|++|++ .+++.+|++||+.+..... .+..+.+.+.++.... ....+-|...-..|
T Consensus 137 ----~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~--~~t~vg~~~~~~LS 208 (659)
T PLN03211 137 ----QILKRTGFVTQDD--ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC--ENTIIGNSFIRGIS 208 (659)
T ss_pred ----hhccceEEECccc--ccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh--cCceeCCCCCCCcC
Confidence 2234579999998 7888899999998754221 1123334444433221 11122233344567
Q ss_pred CcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 236 DGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 236 ~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+||+||++||++|..+|.|+++|||+
T Consensus 209 gGerqRv~ia~aL~~~P~iLlLDEPt 234 (659)
T PLN03211 209 GGERKRVSIAHEMLINPSLLILDEPT 234 (659)
T ss_pred hhhhhHHHHHHHHHhCCCEEEEeCCC
Confidence 79999999999999999999999995
No 324
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.60 E-value=3.4e-16 Score=146.03 Aligned_cols=108 Identities=19% Similarity=0.137 Sum_probs=78.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc-cccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP-ATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~-~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+++|+|... +.|.+|+|.++|.......... .+...+|++|.+ .+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~-------------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~--~~ 88 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGHPK-------------YEVTEGEILFKGEDITDLPPEERARLGIFLAFQYP--PE 88 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-------------CCCCccEEEECCEECCcCCHHHHhhCcEEEeecCh--hh
Confidence 5899999999999999999999999841 1233899999997543321111 123477888887 66
Q ss_pred ecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 187 YGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
++.+++.+++ .. ....+|+||+||++|||++..+|.++|+|||+
T Consensus 89 ~~~~~~~~~l---------------~~----------------~~~~LS~G~~qrv~laral~~~p~illlDEPt 132 (200)
T cd03217 89 IPGVKNADFL---------------RY----------------VNEGFSGGEKKRNEILQLLLLEPDLAILDEPD 132 (200)
T ss_pred ccCccHHHHH---------------hh----------------ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 6665554433 00 00123459999999999999999999999997
No 325
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.59 E-value=6.7e-16 Score=145.30 Aligned_cols=130 Identities=18% Similarity=0.099 Sum_probs=86.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++++|+|||||||++|+|+|++.++ +|.+.++|.+-..... ..-..+++++-+-. .+.
T Consensus 48 P~G~ivgflGaNGAGKSTtLKmLTGll~p~---------------~G~v~V~G~~Pf~~~~-~~~~~~~~v~gqk~-ql~ 110 (325)
T COG4586 48 PKGEIVGFLGANGAGKSTTLKMLTGLLLPT---------------SGKVRVNGKDPFRRRE-EYLRSIGLVMGQKL-QLW 110 (325)
T ss_pred CCCcEEEEEcCCCCcchhhHHHHhCccccC---------------CCeEEecCcCcchhHH-HHHHHHHHHhhhhh-eee
Confidence 899999999999999999999999999988 8999999986443211 12223444442211 233
Q ss_pred cCCCcccCHHHHHHHHH-------HHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCVE-------RLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~-------~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
-++.+.+.+......+. +..+.+.+.++.+ -.++.+-..+|.||++|+.||.+|..+|.|+++|||
T Consensus 111 Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~-------~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEp 183 (325)
T COG4586 111 WDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLE-------GFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEP 183 (325)
T ss_pred eechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcch-------hhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCC
Confidence 33345555544333322 2222233333222 123445555678999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 184 T 184 (325)
T COG4586 184 T 184 (325)
T ss_pred c
Confidence 6
No 326
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.59 E-value=2.6e-17 Score=147.69 Aligned_cols=130 Identities=22% Similarity=0.228 Sum_probs=95.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCe-eeccccc-cccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGT-IGALVIE-RPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~-~~~~~~~-~~~~~~~~~~~q~p~~~ 185 (455)
.+|+.-+|+||||+||||++-.|+|...++ +|++.+.|. ....... +..+..+|--||.| .
T Consensus 29 ~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---------------~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~P--t 91 (249)
T COG4674 29 DPGELRVLIGPNGAGKTTLMDVITGKTRPQ---------------EGEVLFDGDTDLTKLPEHRIARAGIGRKFQKP--T 91 (249)
T ss_pred cCCeEEEEECCCCCCceeeeeeecccCCCC---------------cceEEEcCchhhccCCHHHHHHhccCccccCC--e
Confidence 699999999999999999999999998776 899999983 3333222 23456678889999 8
Q ss_pred EecCCCcccCHHHHHHHHHH---------------HHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCC
Q psy2946 186 NYGHLTPNANLELYQHCVER---------------LWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRV 250 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~~~---------------l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~ 250 (455)
.|..+|+++|+.+.....+. ..+.+.+..+..+. .|...-.+|.||||++.|...+..
T Consensus 92 Vfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~-------~~~~A~~LSHGqKQwLEIGMll~Q 164 (249)
T COG4674 92 VFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE-------RDRLAALLSHGQKQWLEIGMLLAQ 164 (249)
T ss_pred ehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchh-------hhhhhhhhccchhhhhhhheeecc
Confidence 89999999999986543221 12222222222211 122333456699999999999999
Q ss_pred CEEEEecCchh
Q psy2946 251 DNILVLDQERL 261 (455)
Q Consensus 251 ~~~vll~DEpl 261 (455)
+|.++++|||.
T Consensus 165 ~P~lLLlDEPv 175 (249)
T COG4674 165 DPKLLLLDEPV 175 (249)
T ss_pred CCcEEEecCcc
Confidence 99999999995
No 327
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.6e-15 Score=133.75 Aligned_cols=156 Identities=17% Similarity=0.100 Sum_probs=105.0
Q ss_pred CCcchhhhHHHHHHHHHHHHHHhc----cCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCC
Q psy2946 83 ETPMNYYMNVHIILEKQRSEAEQQ----SKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSV 158 (455)
Q Consensus 83 ~t~ml~~~nl~~~~~~~r~~a~~~----~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~ 158 (455)
..|.+++.++++.|+.. ...++ ..+||+.+|+|++|||||||+++|++.+.++ +|++.+
T Consensus 3 ~~PLL~V~~lsk~Yg~~--~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---------------~G~v~Y 65 (258)
T COG4107 3 DKPLLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---------------AGTVTY 65 (258)
T ss_pred CCcceeehhhhhhhCCC--cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---------------CCeEEE
Confidence 35678888999998763 12222 2799999999999999999999999998877 666655
Q ss_pred CCe-----eeccccc----cccccCCCCcccCceEEEecCCCcccCHHHHH-----H---HHHHHHHHHHHhhccCCCCC
Q psy2946 159 PGT-----IGALVIE----RPATIEDGFSQLAPIVYNYGHLTPNANLELYQ-----H---CVERLWKSVDERMNKDSKTN 221 (455)
Q Consensus 159 ~G~-----~~~~~~~----~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~-----~---~~~~l~~~~~~~~~~~~~~~ 221 (455)
.-. ......+ .-++..-||+.|+|.-.+-...|...|+.--. + .++..+..+.++++.+..
T Consensus 66 ~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~-- 143 (258)
T COG4107 66 RMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLD-- 143 (258)
T ss_pred EcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcc--
Confidence 321 1111111 12345568999999655544445555543211 1 134445566666655432
Q ss_pred cccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 222 SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 222 ~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
-||--+-..|+||+||+.|||-|...|.++++|||.
T Consensus 144 ----RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPT 179 (258)
T COG4107 144 ----RIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPT 179 (258)
T ss_pred ----cccCcccccchHHHHHHHHHHHhccCCceEEecCCC
Confidence 233334455679999999999999999999999995
No 328
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.8e-16 Score=144.76 Aligned_cols=132 Identities=18% Similarity=0.144 Sum_probs=91.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc-ccccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI-ERPATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~-~~~~~~~~~~~~q~p~~~~ 186 (455)
++|++++|+||||||||||+++|+|.- +++|. +|+|.++|..+.... ++..+..+.+.||.| .=
T Consensus 28 ~~GEvhaiMGPNGsGKSTLa~~i~G~p------~Y~Vt-------~G~I~~~GedI~~l~~~ERAr~GifLafQ~P--~e 92 (251)
T COG0396 28 KEGEVHAIMGPNGSGKSTLAYTIMGHP------KYEVT-------EGEILFDGEDILELSPDERARAGIFLAFQYP--VE 92 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC------CceEe-------cceEEECCcccccCCHhHHHhcCCEEeecCC--cc
Confidence 799999999999999999999999973 44544 999999999776543 334556677788998 66
Q ss_pred ecCCCcccCHHHHHHHHH----------HHHHHHHHhhccCCCCCcccEEEec-CCCccCCcHHHHHHHHHHcCCCEEEE
Q psy2946 187 YGHLTPNANLELYQHCVE----------RLWKSVDERMNKDSKTNSSGMIINT-CGWIKGDGFKCLMACAKSLRVDNILV 255 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~~~----------~l~~~~~~~~~~~~~~~~s~~iint-~g~~~s~G~~q~~~ia~al~~~~~vl 255 (455)
++..+..+.+........ ....+..+.+..+.. +.+. -.--.|+|++.|..|++.+..+|+++
T Consensus 93 i~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~------~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ 166 (251)
T COG0396 93 IPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEE------FLERYVNEGFSGGEKKRNEILQLLLLEPKLA 166 (251)
T ss_pred CCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHH------HhhcccCCCcCcchHHHHHHHHHHhcCCCEE
Confidence 666676665554333311 111222223332221 0010 01123559999999999999999999
Q ss_pred ecCch
Q psy2946 256 LDQER 260 (455)
Q Consensus 256 l~DEp 260 (455)
|+|||
T Consensus 167 ILDE~ 171 (251)
T COG0396 167 ILDEP 171 (251)
T ss_pred EecCC
Confidence 99998
No 329
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.59 E-value=1.1e-16 Score=171.58 Aligned_cols=142 Identities=16% Similarity=0.069 Sum_probs=98.1
Q ss_pred cchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
+|+++.|+++.|++ ..++++. .+|++++|+|+||||||||+++|+|+..++ +|+|.+.+
T Consensus 321 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---------------~G~i~~~~ 383 (552)
T TIGR03719 321 KVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---------------SGTIKIGE 383 (552)
T ss_pred eEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---------------CeEEEECC
Confidence 45666666665543 1233332 799999999999999999999999997666 78887643
Q ss_pred eeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHH-----HHHHHHHHHhhccCCCCCcccEEEecCCCccC
Q psy2946 161 TIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV-----ERLWKSVDERMNKDSKTNSSGMIINTCGWIKG 235 (455)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~-----~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s 235 (455)
.. .++|++|++. .++...|+.+|+.+..... ......+.+.++.. ....+.+...+|
T Consensus 384 ~~-----------~i~~v~q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~~LS 445 (552)
T TIGR03719 384 TV-----------KLAYVDQSRD-ALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFK------GSDQQKKVGQLS 445 (552)
T ss_pred ce-----------EEEEEeCCcc-ccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCC------hhHhcCchhhCC
Confidence 21 3678888751 3677789999987653211 11122233333221 112345556678
Q ss_pred CcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 236 DGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 236 ~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+||+||++||+++..+|.++|+|||+
T Consensus 446 gGe~qrv~la~al~~~p~lllLDEPt 471 (552)
T TIGR03719 446 GGERNRVHLAKTLKSGGNVLLLDEPT 471 (552)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 89999999999999999999999997
No 330
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.58 E-value=8.8e-16 Score=162.77 Aligned_cols=133 Identities=14% Similarity=0.014 Sum_probs=94.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc-cccccccCCCCcccCce-EE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV-IERPATIEDGFSQLAPI-VY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~-~~~~~~~~~~~~~q~p~-~~ 185 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|...... .....+..++|++|++. ..
T Consensus 277 ~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---------------~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 341 (501)
T PRK11288 277 RAGEIVGLFGLVGAGRSELMKLLYGATRRT---------------AGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEG 341 (501)
T ss_pred eCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---------------CceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCC
Confidence 799999999999999999999999997665 89999988743211 11122345788998862 13
Q ss_pred EecCCCcccCHHHHHHH-------------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCE
Q psy2946 186 NYGHLTPNANLELYQHC-------------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDN 252 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~-------------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~ 252 (455)
++...|+.+|+.+.... ..+.+..+.+.++.. ....|.+...+|+||+||++||+++..+|
T Consensus 342 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~~LSgGq~qrl~la~al~~~p 415 (501)
T PRK11288 342 IIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK------TPSREQLIMNLSGGNQQKAILGRWLSEDM 415 (501)
T ss_pred CcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc------cCCccCccccCCHHHHHHHHHHHHHccCC
Confidence 67778999987653210 011223333333321 11235566677889999999999999999
Q ss_pred EEEecCchh
Q psy2946 253 ILVLDQERL 261 (455)
Q Consensus 253 ~vll~DEpl 261 (455)
.++|+|||+
T Consensus 416 ~lllLDEPt 424 (501)
T PRK11288 416 KVILLDEPT 424 (501)
T ss_pred CEEEEcCCC
Confidence 999999997
No 331
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.58 E-value=1.2e-15 Score=161.78 Aligned_cols=133 Identities=14% Similarity=0.064 Sum_probs=94.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc-ccccccCCCCcccCce-EE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI-ERPATIEDGFSQLAPI-VY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~-~~~~~~~~~~~~q~p~-~~ 185 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|....... ....+..++|++|++. ..
T Consensus 276 ~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---------------~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~ 340 (501)
T PRK10762 276 RKGEILGVSGLMGAGRTELMKVLYGALPRT---------------SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDG 340 (501)
T ss_pred cCCcEEEEecCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEECCCCCHHHHHHCCCEEecCccccCC
Confidence 799999999999999999999999997666 899999987542211 1122345899999862 13
Q ss_pred EecCCCcccCHHHHHH-H------------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCE
Q psy2946 186 NYGHLTPNANLELYQH-C------------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDN 252 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~-~------------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~ 252 (455)
++..+|+.+|+.+... . ....++.+.+.++... ...|.+...+|+||+||++||+|+..+|
T Consensus 341 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~~LSgGekqrv~lA~al~~~p 414 (501)
T PRK10762 341 LVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT------PSMEQAIGLLSGGNQQKVAIARGLMTRP 414 (501)
T ss_pred CcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC------CCccCchhhCCHHHHHHHHHHHHHhhCC
Confidence 6677899998875321 0 0112233334433210 1135556667889999999999999999
Q ss_pred EEEecCchh
Q psy2946 253 ILVLDQERL 261 (455)
Q Consensus 253 ~vll~DEpl 261 (455)
.++|+|||+
T Consensus 415 ~lllLDEPt 423 (501)
T PRK10762 415 KVLILDEPT 423 (501)
T ss_pred CEEEEcCCC
Confidence 999999997
No 332
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.58 E-value=1.3e-16 Score=171.07 Aligned_cols=142 Identities=17% Similarity=0.086 Sum_probs=96.7
Q ss_pred cchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
+|+++.|+++.|++ ..+++++ .+|++++|+|+||||||||+|+|+|+..++ +|+|.+.+
T Consensus 323 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---------------~G~i~~~~ 385 (556)
T PRK11819 323 KVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---------------SGTIKIGE 385 (556)
T ss_pred eEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CeEEEECC
Confidence 34555555555532 1233332 799999999999999999999999997666 78887643
Q ss_pred eeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHH-----HHHHHHHHHhhccCCCCCcccEEEecCCCccC
Q psy2946 161 TIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV-----ERLWKSVDERMNKDSKTNSSGMIINTCGWIKG 235 (455)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~-----~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s 235 (455)
.. .++|++|++ ..+++.+|+.+|+.+..... ......+.+.++.. ....|.+...+|
T Consensus 386 ~~-----------~i~~v~q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~~LS 447 (556)
T PRK11819 386 TV-----------KLAYVDQSR-DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFK------GGDQQKKVGVLS 447 (556)
T ss_pred ce-----------EEEEEeCch-hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCC------hhHhcCchhhCC
Confidence 21 367888874 24677889999987643211 11122233333321 112344556677
Q ss_pred CcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 236 DGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 236 ~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+||+||++||+++..+|.++|+|||+
T Consensus 448 gG~~qrv~la~al~~~p~lllLDEPt 473 (556)
T PRK11819 448 GGERNRLHLAKTLKQGGNVLLLDEPT 473 (556)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 89999999999999999999999997
No 333
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.58 E-value=1.8e-16 Score=167.66 Aligned_cols=156 Identities=14% Similarity=0.017 Sum_probs=96.2
Q ss_pred CcchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCC
Q psy2946 84 TPMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVP 159 (455)
Q Consensus 84 t~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~ 159 (455)
.+|+++.|+++.|++ ..++++. .+|++++|+||||||||||+|+|+|+..+ +.+|+|.++
T Consensus 258 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~--------------~~~G~i~~~ 321 (490)
T PRK10938 258 EPRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ--------------GYSNDLTLF 321 (490)
T ss_pred CceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc--------------ccCCeEEEe
Confidence 346666666666643 1233332 79999999999999999999999997532 127888888
Q ss_pred Ceeeccc-cccccccCCCCcccCceEEEecCCCcccCHHHHH-----------HHHHHHHHHHHHhhccCCCCCcccEEE
Q psy2946 160 GTIGALV-IERPATIEDGFSQLAPIVYNYGHLTPNANLELYQ-----------HCVERLWKSVDERMNKDSKTNSSGMII 227 (455)
Q Consensus 160 G~~~~~~-~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~s~~ii 227 (455)
|...... .....+..++|++|++...+....++.+++.... ....+.++.+.+.++... ...
T Consensus 322 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~ 395 (490)
T PRK10938 322 GRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDK------RTA 395 (490)
T ss_pred cccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCch------hhc
Confidence 8642110 0011234578888876211222234544432210 001122333334433221 123
Q ss_pred ecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 228 NTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 228 nt~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+.+...+|+||+||++||+|+..+|.++|+|||+
T Consensus 396 ~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt 429 (490)
T PRK10938 396 DAPFHSLSWGQQRLALIVRALVKHPTLLILDEPL 429 (490)
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 4555667789999999999999999999999997
No 334
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.57 E-value=2e-15 Score=160.28 Aligned_cols=133 Identities=14% Similarity=0.054 Sum_probs=92.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc-ccccCCCCcccCce-EE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER-PATIEDGFSQLAPI-VY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~-~~~~~~~~~~q~p~-~~ 185 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.++|......... ..+..++|++|.+. ..
T Consensus 287 ~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---------------~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~ 351 (510)
T PRK15439 287 RAGEILGLAGVVGAGRTELAETLYGLRPAR---------------GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSG 351 (510)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCC---------------CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCC
Confidence 799999999999999999999999997666 89999988743221111 12345788888741 13
Q ss_pred EecCCCcccCHHHHHH----------HHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEE
Q psy2946 186 NYGHLTPNANLELYQH----------CVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILV 255 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~----------~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vl 255 (455)
++...|+.+|+..... ..+..++.+.+.++.. ....|.+...+|+||+||++||+|+..+|.++
T Consensus 352 l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~~LSgG~kqrl~la~al~~~p~lL 425 (510)
T PRK15439 352 LYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK------FNHAEQAARTLSGGNQQKVLIAKCLEASPQLL 425 (510)
T ss_pred ccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC------CCCccCccccCCcHHHHHHHHHHHHhhCCCEE
Confidence 6777788887743210 0111223333333321 01235556667889999999999999999999
Q ss_pred ecCchh
Q psy2946 256 LDQERL 261 (455)
Q Consensus 256 l~DEpl 261 (455)
|+|||+
T Consensus 426 lLDEPt 431 (510)
T PRK15439 426 IVDEPT 431 (510)
T ss_pred EECCCC
Confidence 999997
No 335
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.56 E-value=5.5e-16 Score=147.21 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=75.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+|||||||+.|+|+++..++ +|+|.+.|.......
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt---------------~G~i~f~g~~i~~~~-------------------- 81 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPT---------------SGEILFEGKDITKLS-------------------- 81 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCC---------------CceEEEcCcchhhcc--------------------
Confidence 799999999999999999999999997766 999999988532211
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.....+...++.+.++. .....+......|+||+||+.|||||+.+|.+++.|||.
T Consensus 82 ------------~~~~~~~v~elL~~Vgl------~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpv 137 (268)
T COG4608 82 ------------KEERRERVLELLEKVGL------PEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPV 137 (268)
T ss_pred ------------hhHHHHHHHHHHHHhCC------CHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCch
Confidence 11112223333333332 222344556667779999999999999999999999995
No 336
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.56 E-value=1e-15 Score=140.35 Aligned_cols=103 Identities=19% Similarity=0.164 Sum_probs=70.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|..............++|++|
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---------------~G~v~~~g~~~~~~~~~~~~~~i~~~~q------- 80 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKPS---------------SGEILLDGKDLASLSPKELARKIAYVPQ------- 80 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CcEEEECCEECCcCCHHHHHHHHhHHHH-------
Confidence 589999999999999999999999987665 8999888864322111111122344433
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+.+.++... ..+.....+|+|++||++||||+..+|.++|+|||+
T Consensus 81 ----------------------~l~~~gl~~-------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 125 (180)
T cd03214 81 ----------------------ALELLGLAH-------LADRPFNELSGGERQRVLLARALAQEPPILLLDEPT 125 (180)
T ss_pred ----------------------HHHHcCCHh-------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 111111110 012223345669999999999999999999999997
No 337
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.56 E-value=8.9e-16 Score=167.40 Aligned_cols=125 Identities=16% Similarity=0.123 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+||||||||||+|+|+|+..+. +|++.+++ +..++|++|+| +++
T Consensus 476 ~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---------------~G~i~~~~-----------~~~i~~v~Q~~--~l~ 527 (659)
T TIGR00954 476 PSGNHLLICGPNGCGKSSLFRILGELWPVY---------------GGRLTKPA-----------KGKLFYVPQRP--YMT 527 (659)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CCeEeecC-----------CCcEEEECCCC--CCC
Confidence 699999999999999999999999986554 77776553 23478899998 677
Q ss_pred cCCCcccCHHHHHH--------HHHHHHHHHHHhhccCCCCCc-c--cEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 188 GHLTPNANLELYQH--------CVERLWKSVDERMNKDSKTNS-S--GMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 188 g~~sv~~n~~~~~~--------~~~~l~~~~~~~~~~~~~~~~-s--~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.. |+++|+.+... ...+......+.++....... . ....+ .+..+|+||+||++||||+..+|+++|
T Consensus 528 ~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~ill 605 (659)
T TIGR00954 528 LG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAI 605 (659)
T ss_pred Cc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 66 99999876321 011122233333332211100 0 01111 234578899999999999999999999
Q ss_pred cCchhh
Q psy2946 257 DQERLY 262 (455)
Q Consensus 257 ~DEpl~ 262 (455)
+|||+.
T Consensus 606 LDEpts 611 (659)
T TIGR00954 606 LDECTS 611 (659)
T ss_pred EeCCcc
Confidence 999973
No 338
>PLN03130 ABC transporter C family member; Provisional
Probab=99.56 E-value=1.5e-15 Score=178.94 Aligned_cols=123 Identities=14% Similarity=0.124 Sum_probs=89.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC-CcCCCCCeeeccccccccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ-GHVSVPGTIGALVIERPATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq-G~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~ 186 (455)
++|+.++|+|++|||||||+++|+|...+. + |+|.+. ..++|++|+| ++
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---------------~GG~I~l~-------------~~Iayv~Q~p--~L 690 (1622)
T PLN03130 641 PVGSLVAIVGSTGEGKTSLISAMLGELPPR---------------SDASVVIR-------------GTVAYVPQVS--WI 690 (1622)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhhccC---------------CCceEEEc-------------CeEEEEcCcc--cc
Confidence 699999999999999999999999997655 7 777533 3467899999 66
Q ss_pred ecCCCcccCHHHHHHHHHHHHHHHHHhhccCCC----CCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 187 YGHLTPNANLELYQHCVERLWKSVDERMNKDSK----TNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~----~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
|. .|++||+.++...-++..+.+.+.++.... .....-.|.-.|-.+|+|||||++||||+..+++|+|+|||+
T Consensus 691 fn-gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEpt 768 (1622)
T PLN03130 691 FN-ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPL 768 (1622)
T ss_pred CC-CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 65 499999998654323223333332222111 011112334456677889999999999999999999999996
No 339
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.55 E-value=1.1e-15 Score=179.95 Aligned_cols=123 Identities=20% Similarity=0.224 Sum_probs=88.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+|+||||||||+++|+|...+. +|+|.++|. ++|++|+| .++
T Consensus 662 ~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~---------------~G~i~~~g~-------------i~yv~Q~~--~l~ 711 (1522)
T TIGR00957 662 PEGALVAVVGQVGCGKSSLLSALLAEMDKV---------------EGHVHMKGS-------------VAYVPQQA--WIQ 711 (1522)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCccC---------------CcEEEECCE-------------EEEEcCCc--ccc
Confidence 699999999999999999999999987655 888887763 56788998 555
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCC----CCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDS----KTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~----~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+.|+++|+.+......+..+.+.+...... ......-.++..|..+|+||+||++||||+..+++++++|||+
T Consensus 712 -~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~ 788 (1522)
T TIGR00957 712 -NDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 788 (1522)
T ss_pred -CCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 459999998753221111111111111110 0111112455667778889999999999999999999999996
No 340
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.55 E-value=1.6e-15 Score=146.67 Aligned_cols=129 Identities=14% Similarity=0.057 Sum_probs=81.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCC-----------CCCeeeccccccccc--cC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVS-----------VPGTIGALVIERPAT--IE 174 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~-----------~~G~~~~~~~~~~~~--~~ 174 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|. +.|............ ..
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---------------~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 88 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKPN---------------LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVK 88 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcCCC---------------CceEeeccccchhhhhccCchhhhhhHHhhhcccc
Confidence 689999999999999999999999997766 77774 555543221111111 12
Q ss_pred CCCcccCceEEEecCCCcccCHHHHHHH--HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCE
Q psy2946 175 DGFSQLAPIVYNYGHLTPNANLELYQHC--VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDN 252 (455)
Q Consensus 175 ~~~~~q~p~~~~~g~~sv~~n~~~~~~~--~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~ 252 (455)
.++++|.+ .+++. ++.+++...... .......+.+.++... ..+.....+|+|++||++||+++..+|
T Consensus 89 i~~~~~~~--~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~-------~~~~~~~~LS~G~~qrv~laral~~~p 158 (255)
T cd03236 89 VIVKPQYV--DLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRH-------VLDRNIDQLSGGELQRVAIAAALARDA 158 (255)
T ss_pred eeeecchh--ccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCch-------hhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 34555544 33332 344444332111 1122333444443221 123444556779999999999999999
Q ss_pred EEEecCchh
Q psy2946 253 ILVLDQERL 261 (455)
Q Consensus 253 ~vll~DEpl 261 (455)
.++|+|||+
T Consensus 159 ~illlDEPt 167 (255)
T cd03236 159 DFYFFDEPS 167 (255)
T ss_pred CEEEEECCC
Confidence 999999996
No 341
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=1.2e-15 Score=142.26 Aligned_cols=125 Identities=22% Similarity=0.243 Sum_probs=91.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|...|+ +|++.+.|.++... .... .|.
T Consensus 51 ~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt---------------~G~v~v~G~v~~li-----~lg~---------Gf~ 101 (249)
T COG1134 51 YKGERVGIIGHNGAGKSTLLKLIAGIYKPT---------------SGKVKVTGKVAPLI-----ELGA---------GFD 101 (249)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCccCCC---------------CceEEEcceEehhh-----hccc---------CCC
Confidence 799999999999999999999999998877 99999999975332 1111 355
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+.+|.++|+.++........++..++++.-.+-...+..+|.|--..|.||+-|++.+-|...+|+++|+||-+
T Consensus 102 pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvl 175 (249)
T COG1134 102 PELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVL 175 (249)
T ss_pred cccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhh
Confidence 66789999998776642111111111111111112345667777777789999999999999999999999964
No 342
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.55 E-value=2e-15 Score=136.24 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=64.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc-cccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE-RPATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~-~~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|........ +..+...+|++|
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---------------~G~v~~~g~~~~~~~~~~~~~~~i~~~~q------ 82 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPD---------------SGEILVDGKEVSFASPRDARRAGIAMVYQ------ 82 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CeEEEECCEECCcCCHHHHHhcCeEEEEe------
Confidence 589999999999999999999999997665 8888888764221100 001111222221
Q ss_pred ecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 187 YGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+|+||+||+++|||+..+|.++|+|||+
T Consensus 83 -----------------------------------------------LS~G~~qrl~laral~~~p~illlDEP~ 110 (163)
T cd03216 83 -----------------------------------------------LSVGERQMVEIARALARNARLLILDEPT 110 (163)
T ss_pred -----------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 3459999999999999999999999997
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.54 E-value=3.2e-16 Score=170.41 Aligned_cols=141 Identities=18% Similarity=0.099 Sum_probs=94.2
Q ss_pred chhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCe
Q psy2946 86 MNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGT 161 (455)
Q Consensus 86 ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~ 161 (455)
|+++.|+++.|++ ..+++++ .+|++++|+|+||||||||+|+|+|...++ +|+|.+ |.
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---------------~G~i~~-~~ 380 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---------------SGRIHC-GT 380 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---------------CcEEEE-CC
Confidence 4555555555543 1223322 799999999999999999999999987665 788876 32
Q ss_pred eeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHH-----HHHHHHHHHhhccCCCCCcccEEEecCCCccCC
Q psy2946 162 IGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV-----ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGD 236 (455)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~-----~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~ 236 (455)
. ..++|++|.+ ..+++++|+.+|+.+..... ...+..+...+... +...+.+...+|+
T Consensus 381 ~----------~~i~y~~q~~-~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~~LSg 443 (635)
T PRK11147 381 K----------LEVAYFDQHR-AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFH------PKRAMTPVKALSG 443 (635)
T ss_pred C----------cEEEEEeCcc-cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCC------HHHHhChhhhCCH
Confidence 1 1356777764 24777889999887642110 11122233332221 1112344455677
Q ss_pred cHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 237 GFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 237 G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
|++||++||+++..+|.++|+|||+
T Consensus 444 GekqRl~la~al~~~p~lLlLDEPt 468 (635)
T PRK11147 444 GERNRLLLARLFLKPSNLLILDEPT 468 (635)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 9999999999999999999999996
No 344
>PLN03232 ABC transporter C family member; Provisional
Probab=99.54 E-value=1.9e-15 Score=177.66 Aligned_cols=124 Identities=13% Similarity=0.101 Sum_probs=88.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|+.++|+|++|||||||+++|+|...+. +|.+. .++..++|++|+| ++|
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---------------~G~i~------------~~~~~Iayv~Q~p--~Lf 691 (1495)
T PLN03232 641 PVGSLVAIVGGTGEGKTSLISAMLGELSHA---------------ETSSV------------VIRGSVAYVPQVS--WIF 691 (1495)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCccc---------------CCCEE------------EecCcEEEEcCcc--ccc
Confidence 699999999999999999999999986554 66541 1344578999999 666
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCC----CCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSK----TNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~----~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.. |++||+.++.....+..+.+.+....... .....-.|.-.|..+|+|||||++||||+..+++|+|+|||+
T Consensus 692 ~g-TIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEpt 768 (1495)
T PLN03232 692 NA-TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPL 768 (1495)
T ss_pred cc-cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 54 99999998653322222222222221110 111122344557778889999999999999999999999996
No 345
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.8e-15 Score=160.10 Aligned_cols=133 Identities=13% Similarity=0.030 Sum_probs=88.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc-ccccccCCCCcccCce-EE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI-ERPATIEDGFSQLAPI-VY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~-~~~~~~~~~~~~q~p~-~~ 185 (455)
.+|++++|+|+||||||||+|+|+|+..++ +|+|.++|....... ....+...+|++|++. ..
T Consensus 272 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~ 336 (491)
T PRK10982 272 HKGEILGIAGLVGAKRTDIVETLFGIREKS---------------AGTITLHGKKINNHNANEAINHGFALVTEERRSTG 336 (491)
T ss_pred eCCcEEEEecCCCCCHHHHHHHHcCCCcCC---------------ccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCC
Confidence 799999999999999999999999997666 899999886543211 1112344678887642 13
Q ss_pred EecCCCcccC-----HHHHHHH--------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCE
Q psy2946 186 NYGHLTPNAN-----LELYQHC--------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDN 252 (455)
Q Consensus 186 ~~g~~sv~~n-----~~~~~~~--------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~ 252 (455)
+|.+.++.+| +.++... ....+..+.+.++.. ....+.+...+|+||+||++||++++.+|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~~LSgGq~qrv~la~al~~~p 410 (491)
T PRK10982 337 IYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVK------TPGHRTQIGSLSGGNQQKVIIGRWLLTQP 410 (491)
T ss_pred cccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCcc------CCCcccccccCCcHHHHHHHHHHHHhcCC
Confidence 4555655444 3221110 011122233333221 01135566677889999999999999999
Q ss_pred EEEecCchh
Q psy2946 253 ILVLDQERL 261 (455)
Q Consensus 253 ~vll~DEpl 261 (455)
.|+|+|||+
T Consensus 411 ~illLDEPt 419 (491)
T PRK10982 411 EILMLDEPT 419 (491)
T ss_pred CEEEEcCCC
Confidence 999999997
No 346
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=5.1e-16 Score=168.69 Aligned_cols=143 Identities=16% Similarity=0.117 Sum_probs=90.2
Q ss_pred cchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
+|+++.|+++.|++ ..+++++ .+|++++|+||||||||||+|+|+|...++ +|+|.+.+
T Consensus 311 ~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---------------~G~i~~~~ 373 (638)
T PRK10636 311 PLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---------------SGEIGLAK 373 (638)
T ss_pred ceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CCeEEECC
Confidence 35555666655543 2233332 799999999999999999999999997666 88887653
Q ss_pred eeeccccccccccCCCCcccCceEEEecCCCcccCHHHHH-HHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHH
Q psy2946 161 TIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQ-HCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFK 239 (455)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~-~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~ 239 (455)
.. .++|++|.+...+....++.+++.... ......+..+...+... +...+.+...+|+|++
T Consensus 374 ~~-----------~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~------~~~~~~~~~~LSgGek 436 (638)
T PRK10636 374 GI-----------KLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQ------GDKVTEETRRFSGGEK 436 (638)
T ss_pred CE-----------EEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCC------hhHhcCchhhCCHHHH
Confidence 21 256666653212333334444332110 11112233334443321 1123445556777999
Q ss_pred HHHHHHHHcCCCEEEEecCchh
Q psy2946 240 CLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 240 q~~~ia~al~~~~~vll~DEpl 261 (455)
||++||+++..+|.++|+|||+
T Consensus 437 qRl~La~~l~~~p~lLlLDEPt 458 (638)
T PRK10636 437 ARLVLALIVWQRPNLLLLDEPT 458 (638)
T ss_pred HHHHHHHHHhcCCCEEEEcCCC
Confidence 9999999999999999999996
No 347
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.54 E-value=3.6e-15 Score=136.11 Aligned_cols=77 Identities=23% Similarity=0.190 Sum_probs=63.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+|+||||||||+|+|+|+..++ +|+|.++|.. +++++|.+ .
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~------------i~~~~q~~--~-- 71 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPN---------------GDNDEWDGIT------------PVYKPQYI--D-- 71 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCC---------------CcEEEECCEE------------EEEEcccC--C--
Confidence 589999999999999999999999997666 8998887742 22333332 0
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+|+||+||+++||++..+|.++++|||+
T Consensus 72 ----------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 72 ----------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred ----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 3449999999999999999999999996
No 348
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.53 E-value=1.4e-15 Score=177.26 Aligned_cols=133 Identities=17% Similarity=0.119 Sum_probs=96.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+||||||||||+++|+|+..+. .+.+|+|.++|.... ...+...+|++|++ .++
T Consensus 787 ~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g------------~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~--~~~ 848 (1394)
T TIGR00956 787 KPGTLTALMGASGAGKTTLLNVLAERVTTG------------VITGGDRLVNGRPLD----SSFQRSIGYVQQQD--LHL 848 (1394)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHhCCCCCC------------CcceeEEEECCEECC----hhhhcceeeecccc--cCC
Confidence 799999999999999999999999986420 133799999998642 23445679999987 678
Q ss_pred cCCCcccCHHHHHHHH----------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEE-EEe
Q psy2946 188 GHLTPNANLELYQHCV----------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNI-LVL 256 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~----------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~-vll 256 (455)
+.+|++||+.+..... .+..+++.+.++.... ....+...+-..|+||+||++||++|..+|+ |++
T Consensus 849 ~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~---~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLl 925 (1394)
T TIGR00956 849 PTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY---ADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLF 925 (1394)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh---CCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEE
Confidence 8899999999864321 1223344444433221 1112333333567799999999999999995 999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 926 LDEPT 930 (1394)
T TIGR00956 926 LDEPT 930 (1394)
T ss_pred EcCCC
Confidence 99996
No 349
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.52 E-value=2.6e-15 Score=157.81 Aligned_cols=124 Identities=19% Similarity=0.112 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|||+||+|||||+|+|+|...++ +|+|..++.. .+++..|++ .+.
T Consensus 27 ~~G~riGLvG~NGaGKSTLLkilaG~~~~~---------------~G~i~~~~~~-----------~v~~l~Q~~--~~~ 78 (530)
T COG0488 27 NPGERIGLVGRNGAGKSTLLKILAGELEPD---------------SGEVTRPKGL-----------RVGYLSQEP--PLD 78 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCcCC---------------CCeEeecCCc-----------eEEEeCCCC--CcC
Confidence 699999999999999999999999997666 8988776642 245566776 556
Q ss_pred cCCCcccCHHHHHHHHHHHH------------------HHHHHhhccC-------------CCCCcccEEEecCCCccCC
Q psy2946 188 GHLTPNANLELYQHCVERLW------------------KSVDERMNKD-------------SKTNSSGMIINTCGWIKGD 236 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~------------------~~~~~~~~~~-------------~~~~~s~~iint~g~~~s~ 236 (455)
...|+.+.+........++. ..+...+... ........ +++--.+|+
T Consensus 79 ~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSG 156 (530)
T COG0488 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSG 156 (530)
T ss_pred CCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCH
Confidence 55566654433221111100 0010000000 00111111 334445577
Q ss_pred cHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 237 GFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 237 G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
|++.|++||++|..+|+++|+|||+
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPT 181 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPT 181 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 9999999999999999999999996
No 350
>KOG0054|consensus
Probab=99.52 E-value=2.2e-14 Score=162.43 Aligned_cols=167 Identities=16% Similarity=0.157 Sum_probs=123.7
Q ss_pred ec-cCcEEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCC
Q psy2946 62 TW-HGCSITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGL 140 (455)
Q Consensus 62 t~-~g~~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~ 140 (455)
.| .+..|++++ .++.|..+-.+.++ |+++.. ++||+|+|||..|||||||..+|-.+..+.
T Consensus 1132 ~WP~~G~I~f~~--~~~RYrp~lp~VLk--~is~~I-----------~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~--- 1193 (1381)
T KOG0054|consen 1132 SWPSKGEIEFED--LSLRYRPNLPLVLK--GISFTI-----------KPGEKVGIVGRTGAGKSSLILALFRLVEPA--- 1193 (1381)
T ss_pred CCCCCCeEEEEE--eEEEeCCCCcchhc--CceEEE-----------cCCceEEEeCCCCCCHHHHHHHHHHhcCcc---
Confidence 45 456789995 88889776544443 333322 699999999999999999999999997665
Q ss_pred CCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHHHHHHHHHHHhhccC---
Q psy2946 141 NRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKD--- 217 (455)
Q Consensus 141 ~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~--- 217 (455)
+|+|.++|.++....-..++...+.+||+| .+|.. |++.|++=+.+...+..-+..++.+..
T Consensus 1194 ------------~G~I~IDgvdI~~igL~dLRsrlsIIPQdP--vLFsG-TvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v 1258 (1381)
T KOG0054|consen 1194 ------------EGEILIDGVDISKIGLHDLRSRLSIIPQDP--VLFSG-TVRFNLDPFDEYSDDEIWEALERCQLKDVV 1258 (1381)
T ss_pred ------------CCeEEEcCeecccccHHHHHhcCeeeCCCC--ceecC-ccccccCcccccCHHHHHHHHHHhChHHHH
Confidence 999999999988887778888999999999 77766 899999877655333222222222211
Q ss_pred --CCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 218 --SKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 218 --~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
...++. -.+.-.|-..|.||||++++||||..+.+|+++||.+.
T Consensus 1259 ~~~p~~Ld-~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATA 1304 (1381)
T KOG0054|consen 1259 SSLPGGLD-SEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATA 1304 (1381)
T ss_pred hhCCcCCC-ceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccc
Confidence 111121 22344566678899999999999999999999999864
No 351
>PRK13409 putative ATPase RIL; Provisional
Probab=99.51 E-value=8e-15 Score=157.52 Aligned_cols=137 Identities=17% Similarity=0.099 Sum_probs=95.2
Q ss_pred cchhhhHHHHHHHHHHHHHHhc----cCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQ----SKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~----~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
+|+++.|+++.|++. .+++ ..+|++++|+|+||||||||+|+|+|++.++ +|+|.+.
T Consensus 339 ~~l~~~~ls~~~~~~---~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---------------~G~I~~~- 399 (590)
T PRK13409 339 TLVEYPDLTKKLGDF---SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---------------EGEVDPE- 399 (590)
T ss_pred eEEEEcceEEEECCE---EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEEe-
Confidence 455666666555431 1221 2799999999999999999999999997666 7777653
Q ss_pred eeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHH--HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcH
Q psy2946 161 TIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV--ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGF 238 (455)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~--~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~ 238 (455)
..++|++|.+ .++...|+.+|+.+..... ......+.+.++... ..|.+...+|+||
T Consensus 400 ------------~~i~y~~Q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~-------~~~~~~~~LSGGe 458 (590)
T PRK13409 400 ------------LKISYKPQYI--KPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLER-------LLDKNVKDLSGGE 458 (590)
T ss_pred ------------eeEEEecccc--cCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHH-------HHhCCcccCCHHH
Confidence 1367778876 4566789999887643221 112233344433221 2345555677799
Q ss_pred HHHHHHHHHcCCCEEEEecCchh
Q psy2946 239 KCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 239 ~q~~~ia~al~~~~~vll~DEpl 261 (455)
+||++||++|..+|.++|+|||+
T Consensus 459 ~QRvaiAraL~~~p~llLLDEPt 481 (590)
T PRK13409 459 LQRVAIAACLSRDADLYLLDEPS 481 (590)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999999999999999999996
No 352
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.51 E-value=7.8e-15 Score=129.65 Aligned_cols=75 Identities=28% Similarity=0.263 Sum_probs=62.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|+..+. +|+|.++|.. ..+|++|
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---------------~G~i~~~~~~-----------~i~~~~~------- 70 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPD---------------EGIVTWGSTV-----------KIGYFEQ------- 70 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCC---------------ceEEEECCeE-----------EEEEEcc-------
Confidence 589999999999999999999999997655 8888887741 1223332
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.|.|++||++||||+..+|.++|+|||+
T Consensus 71 ----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 71 ----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred ----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3449999999999999999999999997
No 353
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.51 E-value=1e-14 Score=158.14 Aligned_cols=135 Identities=19% Similarity=0.113 Sum_probs=95.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|+.++|+||||||||||+++|+|...+. ...+|+|.++|..... ...+...+|++|++ .++
T Consensus 49 ~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~------------~~~~G~i~~~g~~~~~---~~~~~~i~yv~Q~~--~~~ 111 (617)
T TIGR00955 49 KPGELLAVMGSSGAGKTTLMNALAFRSPKG------------VKGSGSVLLNGMPIDA---KEMRAISAYVQQDD--LFI 111 (617)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCC------------CcceeEEEECCEECCH---HHHhhhceeecccc--ccC
Confidence 799999999999999999999999975431 0126889999975421 23445689999999 889
Q ss_pred cCCCcccCHHHHHHHH----------HHHHHHHHHhhccCCCCCcccEEEec-CCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 188 GHLTPNANLELYQHCV----------ERLWKSVDERMNKDSKTNSSGMIINT-CGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~----------~~l~~~~~~~~~~~~~~~~s~~iint-~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
+.+|++||+.+..... .+..+.+.+.++..... ...+-+. .+-..|+||+||+.||+++..+|.+++
T Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~--~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vll 189 (617)
T TIGR00955 112 PTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCA--NTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLF 189 (617)
T ss_pred ccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcC--cCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEE
Confidence 9999999998865431 12234444444332211 1111110 012357799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 190 lDEPt 194 (617)
T TIGR00955 190 CDEPT 194 (617)
T ss_pred eeCCC
Confidence 99995
No 354
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.49 E-value=3e-14 Score=140.61 Aligned_cols=140 Identities=15% Similarity=0.043 Sum_probs=100.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccc----cCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPAT----IEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~----~~~~~~~q~p~ 183 (455)
.+||.++++|++|||||-.++.+++++... .. --.+|+|.+.|.......+..++ ..++++||+|+
T Consensus 34 ~~GEtlAlVGESGSGKSvTa~sim~LLp~~---~~-------~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPM 103 (534)
T COG4172 34 EAGETLALVGESGSGKSVTALSILGLLPSP---AA-------AHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPM 103 (534)
T ss_pred cCCCEEEEEecCCCCccHHHHHHHHhcCCC---cc-------cCccceeEEcChhhhcCCHHHHhhhcccceEEEecccc
Confidence 689999999999999999999999998653 11 11278999999977665554332 35789999998
Q ss_pred EEEecCCCcccCHHHHHHHHH--------HHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEE
Q psy2946 184 VYNYGHLTPNANLELYQHCVE--------RLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILV 255 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~~~--------~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vl 255 (455)
..+.+-.|+...+.-.+.... ..+-++.++++.... ..-++..+..+|+||+||+.||.||+.+|+++
T Consensus 104 tSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p----~~rl~~yPHeLSGGqRQRVMIAMALan~P~lL 179 (534)
T COG4172 104 TSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP----EKRLDAYPHELSGGQRQRVMIAMALANEPDLL 179 (534)
T ss_pred cccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch----hhhhhhCCcccCcchhhHHHHHHHHcCCCCeE
Confidence 777776666655544443321 122233344443322 12345667788889999999999999999999
Q ss_pred ecCchh
Q psy2946 256 LDQERL 261 (455)
Q Consensus 256 l~DEpl 261 (455)
|.|||+
T Consensus 180 IADEPT 185 (534)
T COG4172 180 IADEPT 185 (534)
T ss_pred eecCCc
Confidence 999995
No 355
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.1e-15 Score=151.34 Aligned_cols=134 Identities=18% Similarity=0.196 Sum_probs=96.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
+.|+.++++|++|+||||++|+|..+ +|+.+|.|+++|+.......+.++..+|+++|+. -+|
T Consensus 287 ~~g~tvAiVg~SG~gKsTI~rllfRF---------------yD~~sG~I~id~qdir~vtq~slR~aIg~VPQDt--vLF 349 (497)
T COG5265 287 PLGKTVAIVGESGAGKSTILRLLFRF---------------YDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDT--VLF 349 (497)
T ss_pred cCccEEEEEeCCCCcHHHHHHHHHHH---------------hCCcCceEEEcchhHHHhHHHHHHHHhCcCcccc--eeh
Confidence 79999999999999999999999999 4666999999999988877777888899999987 666
Q ss_pred cCCCcccCHHHHHHH-----HHHHHH--HHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHC-----VERLWK--SVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-----~~~l~~--~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
.+ |+..|+.+.... +...++ +.....+..+.. ....+---|.-.|+|+|||++|||++..+|.++++||.
T Consensus 350 ND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~g--y~t~VgerglklSggekqrvaiar~ilk~p~il~~dea 426 (497)
T COG5265 350 ND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEG--YDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEA 426 (497)
T ss_pred hh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchh--hhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehh
Confidence 66 677776664321 111111 111111111110 01112223556677999999999999999999999997
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 427 t 427 (497)
T COG5265 427 T 427 (497)
T ss_pred h
Confidence 5
No 356
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.6e-15 Score=164.86 Aligned_cols=131 Identities=18% Similarity=0.119 Sum_probs=75.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc-c-c--ccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER-P-A--TIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~-~-~--~~~~~~~~q~p~ 183 (455)
.+|++++|+|+||||||||+|+|+|...++ +|+|.++|.....+..+ . . ....+++++..
T Consensus 25 ~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---------------~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~- 88 (638)
T PRK10636 25 NPGQKVGLVGKNGCGKSTLLALLKNEISAD---------------GGSYTFPGNWQLAWVNQETPALPQPALEYVIDGD- 88 (638)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEecCCCEEEEEecCCCCCCCCHHHHHHHhh-
Confidence 699999999999999999999999986665 89988877532111111 0 0 11122333221
Q ss_pred EEEecCCCcc-------cCHHHHHHHH-----------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHH
Q psy2946 184 VYNYGHLTPN-------ANLELYQHCV-----------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACA 245 (455)
Q Consensus 184 ~~~~g~~sv~-------~n~~~~~~~~-----------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia 245 (455)
..+..++.. ++...+.... ...+..+.+.++.. ....+.+...+|+|++||++||
T Consensus 89 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~------~~~~~~~~~~LSgGerqRv~LA 161 (638)
T PRK10636 89 -REYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFS------NEQLERPVSDFSGGWRMRLNLA 161 (638)
T ss_pred -HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCC------chhhcCchhhcCHHHHHHHHHH
Confidence 111111110 0001111110 11122222332221 1122444455677999999999
Q ss_pred HHcCCCEEEEecCchh
Q psy2946 246 KSLRVDNILVLDQERL 261 (455)
Q Consensus 246 ~al~~~~~vll~DEpl 261 (455)
++|..+|+++|+|||+
T Consensus 162 ~aL~~~P~lLLLDEPt 177 (638)
T PRK10636 162 QALICRSDLLLLDEPT 177 (638)
T ss_pred HHHccCCCEEEEcCCC
Confidence 9999999999999996
No 357
>PLN03073 ABC transporter F family; Provisional
Probab=99.48 E-value=5.9e-15 Score=161.45 Aligned_cols=141 Identities=17% Similarity=0.134 Sum_probs=89.3
Q ss_pred cchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
+|+++.|+++.|++. ..++++. .+|++++|+|+||||||||+|+|+|+..+. +|+|.+.+
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---------------~G~I~~~~ 570 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---------------SGTVFRSA 570 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---------------CceEEECC
Confidence 345555555555321 1122222 799999999999999999999999997666 78876543
Q ss_pred eeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHH-H----HHHHHHHHHHhhccCCCCCcccEEEecCCCccC
Q psy2946 161 TIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQH-C----VERLWKSVDERMNKDSKTNSSGMIINTCGWIKG 235 (455)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~-~----~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s 235 (455)
. ..++|++|.+ +..+++.++..++.. . ....+..+.+.++.. +...+.+...+|
T Consensus 571 ~-----------~~igyv~Q~~----~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~------~~~~~~~~~~LS 629 (718)
T PLN03073 571 K-----------VRMAVFSQHH----VDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT------GNLALQPMYTLS 629 (718)
T ss_pred c-----------eeEEEEeccc----cccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCC------hHHhcCCccccC
Confidence 2 2356677764 122344455333211 1 112223333333321 112344556677
Q ss_pred CcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 236 DGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 236 ~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
+||+||++||+++..+|.++|+|||+.
T Consensus 630 gGqkqRvaLAraL~~~p~lLLLDEPT~ 656 (718)
T PLN03073 630 GGQKSRVAFAKITFKKPHILLLDEPSN 656 (718)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 899999999999999999999999973
No 358
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.48 E-value=1.2e-14 Score=170.86 Aligned_cols=121 Identities=18% Similarity=0.226 Sum_probs=88.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|+.++|+||||||||||+++|+|...+. +|+|.++|. ++|++|+| .+|
T Consensus 450 ~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---------------~G~i~~~g~-------------iayv~Q~~--~l~ 499 (1490)
T TIGR01271 450 EKGQLLAVAGSTGSGKSSLLMMIMGELEPS---------------EGKIKHSGR-------------ISFSPQTS--WIM 499 (1490)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCE-------------EEEEeCCC--ccC
Confidence 799999999999999999999999997666 899888773 57788998 666
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHH------HhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVD------ERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~------~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.. |+++|+.+...........+. +.+.... ....-.+...|..+|+||+||++||||+..+++++|+|||+
T Consensus 500 ~~-Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~--~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~ 576 (1490)
T TIGR01271 500 PG-TIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFP--EKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 576 (1490)
T ss_pred Cc-cHHHHHHhccccchHHHHHHHHHHhHHHHHHhcc--ccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 64 999999875322111111111 1111111 11112344556777889999999999999999999999996
No 359
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.48 E-value=5.8e-15 Score=160.64 Aligned_cols=130 Identities=17% Similarity=0.093 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc-cccccCCCCcccCceEE-
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE-RPATIEDGFSQLAPIVY- 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~-~~~~~~~~~~~q~p~~~- 185 (455)
.+|++++|+|+||||||||+|+|+|...++ +|+|.++|........ .+.....+++++.....
T Consensus 27 ~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---------------~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~ 91 (635)
T PRK11147 27 EDNERVCLVGRNGAGKSTLMKILNGEVLLD---------------DGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGI 91 (635)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCC---------------CeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhh
Confidence 689999999999999999999999987665 7888877643211111 11111123333221000
Q ss_pred --E-------------ecCCCcccCHHHHHHHH-----------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHH
Q psy2946 186 --N-------------YGHLTPNANLELYQHCV-----------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFK 239 (455)
Q Consensus 186 --~-------------~g~~sv~~n~~~~~~~~-----------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~ 239 (455)
+ ....+..+|+..+.... ...+..+.+.++.. .+.+...+|+|++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---------~~~~~~~LSgGek 162 (635)
T PRK11147 92 EEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---------PDAALSSLSGGWL 162 (635)
T ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---------CCCchhhcCHHHH
Confidence 0 00001122333222111 11122222232221 1344455677999
Q ss_pred HHHHHHHHcCCCEEEEecCchh
Q psy2946 240 CLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 240 q~~~ia~al~~~~~vll~DEpl 261 (455)
||++||++|..+|+|+|+|||+
T Consensus 163 qRv~LAraL~~~P~lLLLDEPt 184 (635)
T PRK11147 163 RKAALGRALVSNPDVLLLDEPT 184 (635)
T ss_pred HHHHHHHHHhcCCCEEEEcCCC
Confidence 9999999999999999999996
No 360
>PRK13409 putative ATPase RIL; Provisional
Probab=99.47 E-value=3.4e-14 Score=152.63 Aligned_cols=127 Identities=21% Similarity=0.187 Sum_probs=84.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCC-----------CCCeeeccccccc------
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVS-----------VPGTIGALVIERP------ 170 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~-----------~~G~~~~~~~~~~------ 170 (455)
.+|++++|+||||||||||+|+|+|++.++ .|+|. +.|..........
T Consensus 97 ~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---------------~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~ 161 (590)
T PRK13409 97 KEGKVTGILGPNGIGKTTAVKILSGELIPN---------------LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIK 161 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccCC---------------CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcc
Confidence 799999999999999999999999997766 88886 7776543221110
Q ss_pred cccCCCCcccCceEEEecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCC
Q psy2946 171 ATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRV 250 (455)
Q Consensus 171 ~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~ 250 (455)
.....+++.+.| .++.. ++.+++.... ....++.+.+.++... ..|..-..+|+||+||++||+++..
T Consensus 162 ~~~~~q~~~~~p--~~~~~-tv~e~l~~~~--~~~~~~~~l~~l~l~~-------~~~~~~~~LSgGe~qrv~ia~al~~ 229 (590)
T PRK13409 162 VVHKPQYVDLIP--KVFKG-KVRELLKKVD--ERGKLDEVVERLGLEN-------ILDRDISELSGGELQRVAIAAALLR 229 (590)
T ss_pred eeecccchhhhh--hhhcc-hHHHHHHhhh--HHHHHHHHHHHcCCch-------hhcCChhhCCHHHHHHHHHHHHHhc
Confidence 111123333444 23322 7777765431 1122334444443321 2344555667799999999999999
Q ss_pred CEEEEecCchh
Q psy2946 251 DNILVLDQERL 261 (455)
Q Consensus 251 ~~~vll~DEpl 261 (455)
+|+++|+|||+
T Consensus 230 ~p~lllLDEPt 240 (590)
T PRK13409 230 DADFYFFDEPT 240 (590)
T ss_pred CCCEEEEECCC
Confidence 99999999995
No 361
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=3.1e-14 Score=127.55 Aligned_cols=86 Identities=26% Similarity=0.282 Sum_probs=65.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|.+.+. +|+++++|...............+|++|
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~---------------~G~i~~~~~~~~~~~~~~~~~~i~~~~q------- 80 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPT---------------SGEILIDGKDIAKLPLEELRRRIGYVPQ------- 80 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ccEEEECCEEcccCCHHHHHhceEEEee-------
Confidence 589999999999999999999999986555 8999998874322111111122233222
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+|.|++||++|++++..+|.++++|||+
T Consensus 81 ----------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~ 108 (157)
T cd00267 81 ----------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPT 108 (157)
T ss_pred ----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3449999999999999999999999997
No 362
>KOG0054|consensus
Probab=99.45 E-value=3.8e-14 Score=160.49 Aligned_cols=124 Identities=22% Similarity=0.245 Sum_probs=98.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|+.++|||+.|||||+|+..|+|-+... +|++.++|. .+|++|.| +.
T Consensus 545 ~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---------------sG~v~v~gs-------------iaYv~Q~p---WI 593 (1381)
T KOG0054|consen 545 KKGQLVAVVGPVGSGKSSLLSAILGEMPKL---------------SGSVAVNGS-------------VAYVPQQP---WI 593 (1381)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcccc---------------cceEEEcCe-------------EEEecccc---Hh
Confidence 699999999999999999999999987766 898888887 45788888 44
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCC----cccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTN----SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~----~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
-+-|++||+.|.....++..+.+.+.+...++.. ...-.|--.|..+|+|||||+++|||+..|.+|+++|+|+.
T Consensus 594 ~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplS 672 (1381)
T KOG0054|consen 594 QNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLS 672 (1381)
T ss_pred hCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcch
Confidence 4459999999988777766666666555443311 11234444677788899999999999999999999999973
No 363
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.44 E-value=7.4e-14 Score=163.03 Aligned_cols=138 Identities=14% Similarity=0.101 Sum_probs=95.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+||||||||||+|+|+|..... ..|.+|+|.++|...... ....+...+|++|++ .++
T Consensus 85 ~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~-----------~~~~~G~I~~~G~~~~~~-~~~~r~~i~yv~Q~d--~~~ 150 (1394)
T TIGR00956 85 KPGELTVVLGRPGSGCSTLLKTIASNTDGF-----------HIGVEGVITYDGITPEEI-KKHYRGDVVYNAETD--VHF 150 (1394)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHhCCCCCC-----------CCCceeEEEECCEehHHH-HhhcCceeEEecccc--ccC
Confidence 899999999999999999999999985321 113389999999754321 122344578999988 789
Q ss_pred cCCCcccCHHHHHHHH-----------H----HHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCE
Q psy2946 188 GHLTPNANLELYQHCV-----------E----RLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDN 252 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-----------~----~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~ 252 (455)
+.+|++|++.+...+. + +..+.+.+.++.... ....+-|...-..|+|||||+.||+++..+|
T Consensus 151 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~--~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p 228 (1394)
T TIGR00956 151 PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHT--RNTKVGNDFVRGVSGGERKRVSIAEASLGGA 228 (1394)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccc--cCceeCCCcCCCCCcccchHHHHHHHHHhCC
Confidence 9999999998864421 1 111223333433221 1111112222335679999999999999999
Q ss_pred EEEecCchh
Q psy2946 253 ILVLDQERL 261 (455)
Q Consensus 253 ~vll~DEpl 261 (455)
.|+++|||+
T Consensus 229 ~vlllDEPT 237 (1394)
T TIGR00956 229 KIQCWDNAT 237 (1394)
T ss_pred CEEEEeCCC
Confidence 999999995
No 364
>KOG0061|consensus
Probab=99.43 E-value=1.2e-13 Score=148.91 Aligned_cols=135 Identities=19% Similarity=0.122 Sum_probs=97.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++.+|+||+|||||||+++|+|..... . .-+|+|.++|... ..+..+...+|+.|+. .++
T Consensus 54 ~~Gel~AimG~SGsGKtTLL~~Lagr~~~~-----~-------~~~G~ilvNG~~~---~~~~~~~~s~yV~QdD--~l~ 116 (613)
T KOG0061|consen 54 KPGELLAIMGPSGSGKTTLLNALAGRLNGG-----L-------KLSGEILLNGRPR---DSRSFRKISGYVQQDD--VLL 116 (613)
T ss_pred ecCeEEEEECCCCCCHHHHHHHHhccccCC-----C-------cceEEEEECCccC---chhhhhheeEEEcccc--ccc
Confidence 799999999999999999999999986431 1 1178999999532 1234456679999998 899
Q ss_pred cCCCcccCHHHHHHHH----------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 188 GHLTPNANLELYQHCV----------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~----------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
+.+||+|++.+..++. ....+++.+.++.... ....+-|...--.|+|+++|++||..+..||.|+++
T Consensus 117 ~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~--~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLfl 194 (613)
T KOG0061|consen 117 PTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKC--ADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFL 194 (613)
T ss_pred ccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhh--ccceecCCCCCccccchhhHHHHHHHHHcCCCEEEe
Confidence 9999999999887652 2334444444443311 111222222222466999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 195 DEPT 198 (613)
T KOG0061|consen 195 DEPT 198 (613)
T ss_pred cCCC
Confidence 9996
No 365
>PLN03140 ABC transporter G family member; Provisional
Probab=99.41 E-value=8.9e-14 Score=162.18 Aligned_cols=135 Identities=14% Similarity=0.114 Sum_probs=94.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+||||||||||+|+|+|.+.+. . . -+|+|.++|....... .+...+|++|++ .++
T Consensus 189 ~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~---~--------~-~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d--~~~ 251 (1470)
T PLN03140 189 KPSRMTLLLGPPSSGKTTLLLALAGKLDPS---L--------K-VSGEITYNGYRLNEFV---PRKTSAYISQND--VHV 251 (1470)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---C--------c-ceeEEEECCEechhhc---ccceeEEecccc--cCC
Confidence 899999999999999999999999986432 0 0 1799999997543211 134578999988 789
Q ss_pred cCCCcccCHHHHHHHHH--------------H---------------------------HHHHHHHhhccCCCCCcccEE
Q psy2946 188 GHLTPNANLELYQHCVE--------------R---------------------------LWKSVDERMNKDSKTNSSGMI 226 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~--------------~---------------------------l~~~~~~~~~~~~~~~~s~~i 226 (455)
+.+|++|++.+...+.. + ..+.+.+.++.... ....+
T Consensus 252 ~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~--~~t~v 329 (1470)
T PLN03140 252 GVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDIC--KDTIV 329 (1470)
T ss_pred CcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccc--cCcee
Confidence 99999999998654310 0 01122223322211 11122
Q ss_pred EecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 227 INTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 227 int~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
-|......|+|||||+.||+++..+|.++++|||+
T Consensus 330 g~~~~rglSGGerkRVsia~aL~~~p~vlllDEPT 364 (1470)
T PLN03140 330 GDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEIS 364 (1470)
T ss_pred CCccccCCCcccceeeeehhhhcCCCcEEEEeCCC
Confidence 23333345779999999999999999999999995
No 366
>PLN03140 ABC transporter G family member; Provisional
Probab=99.41 E-value=9.9e-14 Score=161.79 Aligned_cols=133 Identities=16% Similarity=0.161 Sum_probs=93.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+||||||||||+++|+|.... | +.+|+|.++|.... ....+...+|++|++ .++
T Consensus 904 ~~Gel~aL~G~sGaGKTTLL~~LaG~~~~----g---------~~~G~I~inG~~~~---~~~~~~~igyv~Q~d--~~~ 965 (1470)
T PLN03140 904 RPGVLTALMGVSGAGKTTLMDVLAGRKTG----G---------YIEGDIRISGFPKK---QETFARISGYCEQND--IHS 965 (1470)
T ss_pred ECCeEEEEECCCCCCHHHHHHHHcCCCCC----C---------cccceEEECCccCC---hHHhhhheEEEcccc--ccC
Confidence 79999999999999999999999997421 1 12788988886421 112234578999998 788
Q ss_pred cCCCcccCHHHHHHHH----------HHHHHHHHHhhccCCCCCcccEEEecCC-CccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 188 GHLTPNANLELYQHCV----------ERLWKSVDERMNKDSKTNSSGMIINTCG-WIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~----------~~l~~~~~~~~~~~~~~~~s~~iint~g-~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
+.+|++||+.+..... ...++++.+.++..... ...+..++ -.+|+|||||+.||++|..+|.+++
T Consensus 966 ~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~---~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~ 1042 (1470)
T PLN03140 966 PQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLK---DAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIF 1042 (1470)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHh---CCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEE
Confidence 8999999998864321 11233444444432211 11111111 2357799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 1043 LDEPT 1047 (1470)
T PLN03140 1043 MDEPT 1047 (1470)
T ss_pred EeCCC
Confidence 99996
No 367
>PTZ00243 ABC transporter; Provisional
Probab=99.39 E-value=1.2e-13 Score=162.68 Aligned_cols=123 Identities=18% Similarity=0.172 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+|+||||||||+++|+|...+. +|+|.+. ..++|++|+| .++
T Consensus 684 ~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---------------~G~i~~~-------------~~i~yv~Q~~--~l~ 733 (1560)
T PTZ00243 684 PRGKLTVVLGATGSGKSTLLQSLLSQFEIS---------------EGRVWAE-------------RSIAYVPQQA--WIM 733 (1560)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCC---------------CcEEEEC-------------CeEEEEeCCC--ccC
Confidence 799999999999999999999999986655 7877532 2478889998 555
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCC----CCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDS----KTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~----~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
..|+++|+.++.....+..+...+..+... ........++..|..+|+||+||++||||+..+|+++|+|||+
T Consensus 734 -~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~ 810 (1560)
T PTZ00243 734 -NATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPL 810 (1560)
T ss_pred -CCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 459999998753221111111111110000 0000111344566777889999999999999999999999996
No 368
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.37 E-value=4.5e-13 Score=118.06 Aligned_cols=132 Identities=17% Similarity=0.122 Sum_probs=83.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCe--eeccccccc------cccCCCCcc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGT--IGALVIERP------ATIEDGFSQ 179 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~--~~~~~~~~~------~~~~~~~~~ 179 (455)
+.||++++-||+|+|||||+|+|-+-..++ +|+|.+... ...-...+| .+.-+||+.
T Consensus 35 ~aGECvvL~G~SG~GKStllr~LYaNY~~d---------------~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVS 99 (235)
T COG4778 35 NAGECVVLHGPSGSGKSTLLRSLYANYLPD---------------EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVS 99 (235)
T ss_pred cCccEEEeeCCCCCcHHHHHHHHHhccCCC---------------CceEEEEeCcchhhhhccChHHHHHHHHhhhHHHH
Confidence 589999999999999999999999877666 777765332 111000111 233468887
Q ss_pred cCceEEEecCCCcccCHHHHH-------HHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCE
Q psy2946 180 LAPIVYNYGHLTPNANLELYQ-------HCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDN 252 (455)
Q Consensus 180 q~p~~~~~g~~sv~~n~~~~~-------~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~ 252 (455)
|.- ...+..+..|-..-.+ +.....+..+..++.... ..-..++-..|+|++||+.|||.|..|+
T Consensus 100 QFL--RviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlpe------rLW~LaPaTFSGGEqQRVNIaRgfivd~ 171 (235)
T COG4778 100 QFL--RVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPE------RLWSLAPATFSGGEQQRVNIARGFIVDY 171 (235)
T ss_pred HHH--HhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCH------HHhcCCCcccCCchheehhhhhhhhccC
Confidence 754 3344433332222111 112233444444443322 2223445556779999999999999999
Q ss_pred EEEecCchhh
Q psy2946 253 ILVLDQERLY 262 (455)
Q Consensus 253 ~vll~DEpl~ 262 (455)
.|+++|||+.
T Consensus 172 pILLLDEPTa 181 (235)
T COG4778 172 PILLLDEPTA 181 (235)
T ss_pred ceEEecCCcc
Confidence 9999999974
No 369
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.37 E-value=3.3e-13 Score=123.12 Aligned_cols=97 Identities=13% Similarity=0.051 Sum_probs=62.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|.+ . +|++.+.|..... . ..+. .++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~----~---------------~G~v~~~~~~~~~-----~--------~~~~-~~~ 65 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY----A---------------SGKARLISFLPKF-----S--------RNKL-IFI 65 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh----c---------------CCcEEECCccccc-----c--------cccE-EEE
Confidence 5899999999999999999999853 3 5666554442110 0 1111 111
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCC--EEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVD--NILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~--~~vll~DEpl 261 (455)
.. .++.+++.... ...+.....+|+||+||+++|+|+..+ |+++|+|||+
T Consensus 66 ~q------------------~~~l~~~~L~~------~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt 117 (176)
T cd03238 66 DQ------------------LQFLIDVGLGY------LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPS 117 (176)
T ss_pred hH------------------HHHHHHcCCCc------cccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc
Confidence 11 11223332211 112334455667999999999999999 9999999996
No 370
>KOG0059|consensus
Probab=99.34 E-value=1.4e-13 Score=154.46 Aligned_cols=152 Identities=16% Similarity=0.105 Sum_probs=114.4
Q ss_pred cchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
..+...|+.+.|+.... |.+.. ++||+.+++|+|||||||++++|+|...++ .|++.++|
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t---------------~G~a~i~g 626 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT---------------SGEALIKG 626 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC---------------cceEEEec
Confidence 34566777787776544 55553 899999999999999999999999998776 89999988
Q ss_pred eeecccccc-ccccCCCCcccCceEEEecCCCcccCHHHHHHHHH----HHH---HHHHHhhccCCCCCcccEEEecCCC
Q psy2946 161 TIGALVIER-PATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVE----RLW---KSVDERMNKDSKTNSSGMIINTCGW 232 (455)
Q Consensus 161 ~~~~~~~~~-~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~----~l~---~~~~~~~~~~~~~~~s~~iint~g~ 232 (455)
..+...... .....+||++|.. .++..+|.+|++.+|.+... ... +...+.++..+. .|.+--
T Consensus 627 ~~i~~~~~~~~~~~~iGyCPQ~d--~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~-------~~~~~~ 697 (885)
T KOG0059|consen 627 HDITVSTDFQQVRKQLGYCPQFD--ALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPY-------ANKQVR 697 (885)
T ss_pred CccccccchhhhhhhcccCCchh--hhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhh-------hccchh
Confidence 876543332 3667799999988 89999999999999987642 222 333333322211 223333
Q ss_pred ccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 233 IKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 233 ~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
..|+|+++|+.+|.|+.-+|.++++|||.
T Consensus 698 ~ySgG~kRkLs~aialig~p~vi~LDEPs 726 (885)
T KOG0059|consen 698 TYSGGNKRRLSFAIALIGDPSVILLDEPS 726 (885)
T ss_pred hCCCcchhhHHHHHHHhcCCCEEEecCCC
Confidence 34569999999999999999999999985
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.31 E-value=2.9e-13 Score=142.52 Aligned_cols=142 Identities=22% Similarity=0.075 Sum_probs=88.5
Q ss_pred chhhhHHHHHHHHHHHHHHhc----cCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCe
Q psy2946 86 MNYYMNVHIILEKQRSEAEQQ----SKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGT 161 (455)
Q Consensus 86 ml~~~nl~~~~~~~r~~a~~~----~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~ 161 (455)
++++.|+++.|++. ....++ +.+|++++|+||||+|||||+|+|+|...+. +|.|...-.
T Consensus 321 vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---------------~G~v~~g~~ 384 (530)
T COG0488 321 VLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---------------SGTVKVGET 384 (530)
T ss_pred eEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---------------CceEEeCCc
Confidence 44555555555432 112222 1799999999999999999999999987655 777765444
Q ss_pred eeccccccccccCCCCcccCceEEEecCCCcccCHHHHH-HHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHH
Q psy2946 162 IGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQ-HCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKC 240 (455)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~-~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q 240 (455)
+. ++|..|.-. .+..+.|+.+++.-+. ......+..+..++.... .-...+--.+|+|+|.
T Consensus 385 v~-----------igyf~Q~~~-~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~------~~~~~~v~~LSGGEk~ 446 (530)
T COG0488 385 VK-----------IGYFDQHRD-ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTG------EDQEKPVGVLSGGEKA 446 (530)
T ss_pred eE-----------EEEEEehhh-hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCCh------HHHhCchhhcCHhHHH
Confidence 32 334434321 1225556655554433 111233444444443322 1122333445669999
Q ss_pred HHHHHHHcCCCEEEEecCchh
Q psy2946 241 LMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 241 ~~~ia~al~~~~~vll~DEpl 261 (455)
|+.+|+.+...|-|+|+|||+
T Consensus 447 Rl~La~ll~~~pNvLiLDEPT 467 (530)
T COG0488 447 RLLLAKLLLQPPNLLLLDEPT 467 (530)
T ss_pred HHHHHHHhccCCCEEEEcCCC
Confidence 999999999999999999996
No 372
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.31 E-value=1.6e-13 Score=135.01 Aligned_cols=127 Identities=18% Similarity=0.120 Sum_probs=81.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++||+|.|+|.||||||||+++|.|+..|+ +|+|.++|........+.++...+-+|.+- ++|
T Consensus 347 krGelvFliG~NGsGKST~~~LLtGL~~Pq---------------sG~I~ldg~pV~~e~ledYR~LfSavFsDy--hLF 409 (546)
T COG4615 347 KRGELVFLIGGNGSGKSTLAMLLTGLYQPQ---------------SGEILLDGKPVSAEQLEDYRKLFSAVFSDY--HLF 409 (546)
T ss_pred ecCcEEEEECCCCCcHHHHHHHHhcccCCC---------------CCceeECCccCCCCCHHHHHHHHHHHhhhH--hhh
Confidence 699999999999999999999999998877 999999999654433334444444455554 555
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCC-CcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCc
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKT-NSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE 259 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~-~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DE 259 (455)
..+=-.++..- .+.++.+.++++...+. -..+ +.+...+|.|||+|+++.-|+.-+.+|+++||
T Consensus 410 ~~ll~~e~~as-----~q~i~~~LqrLel~~ktsl~d~---~fs~~kLStGQkKRlAll~AllEeR~Ilv~DE 474 (546)
T COG4615 410 DQLLGPEGKAS-----PQLIEKWLQRLELAHKTSLNDG---RFSNLKLSTGQKKRLALLLALLEERDILVLDE 474 (546)
T ss_pred HhhhCCccCCC-----hHHHHHHHHHHHHhhhhcccCC---cccccccccchHHHHHHHHHHHhhCCeEEeeh
Confidence 44322222100 11122222222221110 0111 12223346699999999999999999999998
No 373
>PLN03073 ABC transporter F family; Provisional
Probab=99.28 E-value=1.4e-13 Score=150.68 Aligned_cols=48 Identities=19% Similarity=0.107 Sum_probs=37.1
Q ss_pred cchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.|+.+.|+++.|++ ..++++. .+|++++|+|+||||||||+|+|+|..
T Consensus 176 ~~I~i~nls~~y~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~ 227 (718)
T PLN03073 176 KDIHMENFSISVGG--RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHA 227 (718)
T ss_pred eeEEEceEEEEeCC--CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45666777777754 2244443 899999999999999999999999863
No 374
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.22 E-value=1e-12 Score=138.04 Aligned_cols=130 Identities=23% Similarity=0.245 Sum_probs=79.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|+.++|.|+||||||||+|+|+|+..- |+|.|..|... ..-|.+|.| |+.
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLWP~---------------g~G~I~~P~~~-----------~~lflpQ~P--Y~p 468 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLWPW---------------GSGRISMPADS-----------ALLFLPQRP--YLP 468 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCcc---------------CCCceecCCCC-----------ceEEecCCC--CCC
Confidence 69999999999999999999999999643 38988877221 122344444 221
Q ss_pred cCCCcccCHHHH------------HHHHHHHHHHHHHhhccCCCCCcccEEEecCCC--ccCCcHHHHHHHHHHcCCCEE
Q psy2946 188 GHLTPNANLELY------------QHCVERLWKSVDERMNKDSKTNSSGMIINTCGW--IKGDGFKCLMACAKSLRVDNI 253 (455)
Q Consensus 188 g~~sv~~n~~~~------------~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~--~~s~G~~q~~~ia~al~~~~~ 253 (455)
.-|.+|-+.+. ..+.+.-...+.++++. ...| ++|.|++||+++||.+...|+
T Consensus 469 -~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~------------~~~W~~vLS~GEqQRlafARilL~kP~ 535 (604)
T COG4178 469 -QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE------------EDRWDRVLSGGEQQRLAFARLLLHKPK 535 (604)
T ss_pred -CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc------------cCcHhhhcChhHHHHHHHHHHHHcCCC
Confidence 11332222111 11111111122222221 1224 347799999999999999999
Q ss_pred EEecCchh-----------hHHHHhhCCCceEEEEeC
Q psy2946 254 LVLDQERL-----------YNELIRELPKSYDVVLLP 279 (455)
Q Consensus 254 vll~DEpl-----------~~~l~~~l~~~~~v~~l~ 279 (455)
++++||-+ ++.+.+.+ +.++|+.+.
T Consensus 536 ~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~ 571 (604)
T COG4178 536 WVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVG 571 (604)
T ss_pred EEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEec
Confidence 99999963 33334444 345677664
No 375
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.16 E-value=9.4e-12 Score=115.81 Aligned_cols=121 Identities=17% Similarity=0.042 Sum_probs=70.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+| +++|+||||||||||+++|++++.+. ..... -....+++.+.|..... .+....+++++|++..+ |
T Consensus 21 ~~g-~~~i~G~nGsGKStll~al~~l~~~~---~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~-~ 89 (197)
T cd03278 21 PPG-LTAIVGPNGSGKSNIIDAIRWVLGEQ---SAKSL---RGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR-Y 89 (197)
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHhccc---cchhh---cccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-e
Confidence 467 99999999999999999999987432 00000 00112345555543221 12234578888887322 2
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcC----CCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLR----VDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~----~~~~vll~DEpl 261 (455)
+. .. ....+++.+. .. ..+.+...+|+||+||+++|+++. .++.++++|||+
T Consensus 90 ~~---~~---------~~~~~~~l~~---~~-------~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 90 SI---IS---------QGDVSEIIEA---PG-------KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred eE---Ee---------hhhHHHHHhC---CC-------ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 21 00 0111112221 00 123344456679999999999986 456899999996
No 376
>KOG0065|consensus
Probab=99.11 E-value=1.7e-11 Score=136.65 Aligned_cols=140 Identities=16% Similarity=0.169 Sum_probs=104.4
Q ss_pred HHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCC
Q psy2946 101 SEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDG 176 (455)
Q Consensus 101 ~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~ 176 (455)
+..++++ ++|-..+++|++|||||||+++|++... ..++ .|+|.++|..-. ++...+..|
T Consensus 804 ~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t------~G~I-------~Gdi~i~G~p~~---q~tF~R~~G 867 (1391)
T KOG0065|consen 804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKT------GGYI-------EGDILISGFPKD---QETFARVSG 867 (1391)
T ss_pred eEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcc------cceE-------EeEEEECCeeCc---hhhhccccc
Confidence 4455554 8999999999999999999999998642 1223 789999887422 244566789
Q ss_pred CcccCceEEEecCCCcccCHHHHHHHH-------H---HHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHH
Q psy2946 177 FSQLAPIVYNYGHLTPNANLELYQHCV-------E---RLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAK 246 (455)
Q Consensus 177 ~~~q~p~~~~~g~~sv~~n~~~~~~~~-------~---~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~ 246 (455)
|+.|++ .+.+..||+|-+.+-+.+. + +..+++.+.++.. .....+|-.+|--++..||+|+.|+-
T Consensus 868 YvqQ~D--iH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~---~~~daiVG~~G~GLs~eQRKrLTIgV 942 (1391)
T KOG0065|consen 868 YVEQQD--IHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK---EYADALVGLPGSGLSTEQRKRLTIGV 942 (1391)
T ss_pred eeeccc--ccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch---hhhhhhccCCCCCCCHHHhceeeEEE
Confidence 999998 6779999999998865542 1 2334444444433 23345677788556678999999999
Q ss_pred HcCCCE-EEEecCchh
Q psy2946 247 SLRVDN-ILVLDQERL 261 (455)
Q Consensus 247 al~~~~-~vll~DEpl 261 (455)
.|..+| .|+++|||+
T Consensus 943 ELvA~P~~ilFLDEPT 958 (1391)
T KOG0065|consen 943 ELVANPSSILFLDEPT 958 (1391)
T ss_pred EEecCCceeEEecCCC
Confidence 999999 899999995
No 377
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.11 E-value=7.7e-11 Score=112.09 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=30.2
Q ss_pred EecCCCccCCcHHHHHHHHHHcCCCE--EEEecCchh
Q psy2946 227 INTCGWIKGDGFKCLMACAKSLRVDN--ILVLDQERL 261 (455)
Q Consensus 227 int~g~~~s~G~~q~~~ia~al~~~~--~vll~DEpl 261 (455)
.+.....+|+||+||++||+++..+| +++|+|||+
T Consensus 131 ~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt 167 (226)
T cd03270 131 LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPS 167 (226)
T ss_pred ccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 45566677889999999999999987 599999996
No 378
>KOG0062|consensus
Probab=99.09 E-value=3.1e-11 Score=122.68 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=26.0
Q ss_pred cCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 234 KGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 234 ~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+|+|.++|+++|||+-.+|+++++|||+
T Consensus 199 lSGGWrMrlaLARAlf~~pDlLLLDEPT 226 (582)
T KOG0062|consen 199 LSGGWRMRLALARALFAKPDLLLLDEPT 226 (582)
T ss_pred cCcchhhHHHHHHHHhcCCCEEeecCCc
Confidence 4559999999999999999999999996
No 379
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.05 E-value=1.2e-10 Score=111.84 Aligned_cols=33 Identities=21% Similarity=-0.068 Sum_probs=26.9
Q ss_pred cCCCccCCcHHHHHHHHHHcC----CCEEEEecCchh
Q psy2946 229 TCGWIKGDGFKCLMACAKSLR----VDNILVLDQERL 261 (455)
Q Consensus 229 t~g~~~s~G~~q~~~ia~al~----~~~~vll~DEpl 261 (455)
..+...|+||+||++||+++. .+|.++|+|||+
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~ 190 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEID 190 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCc
Confidence 344456779999999999995 358999999996
No 380
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=99.03 E-value=6.2e-11 Score=104.09 Aligned_cols=115 Identities=30% Similarity=0.422 Sum_probs=69.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccE-EEecCCCCCcCCCCCe----------eeccccccccccCCCC--
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPI-FVDLDVGQGHVSVPGT----------IGALVIERPATIEDGF-- 177 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~-~vDlDpgqG~i~~~G~----------~~~~~~~~~~~~~~~~-- 177 (455)
++++|+|++|||||||++.|++.+... |++|+ +.|.|+|++++..||+ .++....+++.....+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~---g~~v~~ik~~~~g~~~~d~pG~Dt~r~~aGA~~~~~~~~~~~~~~~~~~~ 77 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR---GYRVAVIKHTDHGQFEIDPPGTDTWRFKAGADVVLVSSDEPIALETQFHQ 77 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEE-STTSTTCSTTCHHHHHHHCT-SEEEEECSSEEEEEEECSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc---CCceEEEEEccCCCcccCCCCcccccccccceEEEEEcCCceeeeeeccc
Confidence 589999999999999999999999988 99998 8899999999999999 5554444422211111
Q ss_pred ccc-----------CceEEEecCCCcccCHHHHHHH-HHHHHHHHHHhhccCCCCCcccEEEec
Q psy2946 178 SQL-----------APIVYNYGHLTPNANLELYQHC-VERLWKSVDERMNKDSKTNSSGMIINT 229 (455)
Q Consensus 178 ~~q-----------~p~~~~~g~~sv~~n~~~~~~~-~~~l~~~~~~~~~~~~~~~~s~~iint 229 (455)
... .++.+++|..++..++...... ..++.... +........+.++++|||
T Consensus 78 ~~~~~L~~~~~~~~~Dlvl~eG~k~~~~~pki~~~~~~~~~~~~~-~~~~~~~~~~~~~~ii~~ 140 (140)
T PF03205_consen 78 RKSMDLEELLSLLPVDLVLVEGFKSPSPNPKIEVVRNEEELEELV-KRRAVAPKVDESGKIINT 140 (140)
T ss_dssp CCCCBHHHHHHHCC-SEEEEESSSSGGGSCEEEEESSCCHHHHHT-CCHCCECCHCHS-EEE--
T ss_pred cCCCCHHHHHHhhCCCEEEEecCCCcccCCCEEEEECccCHHHHh-hhhhhhhhhccceEEEeC
Confidence 111 2367889998877666521100 00111111 111112345677888886
No 381
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.03 E-value=3.8e-11 Score=106.47 Aligned_cols=129 Identities=20% Similarity=0.161 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
..|+++-++||||||||||+-.++|+. |++|+|.+.|...-......+.....|..|+....|
T Consensus 23 ~aGe~~HliGPNGaGKSTLLA~lAGm~----------------~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f- 85 (248)
T COG4138 23 RAGEILHLVGPNGAGKSTLLARMAGMT----------------SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPF- 85 (248)
T ss_pred ccceEEEEECCCCccHHHHHHHHhCCC----------------CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcc-
Confidence 689999999999999999999999985 458999999986544333333333344443220011
Q ss_pred cCCCcccCHHHHH--HHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHc-------CCCEEEEecC
Q psy2946 188 GHLTPNANLELYQ--HCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSL-------RVDNILVLDQ 258 (455)
Q Consensus 188 g~~sv~~n~~~~~--~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al-------~~~~~vll~D 258 (455)
.+.++..+.++. ..+....+.+...+..+++...+- ..+|+|+.||+.+|..+ .++..++++|
T Consensus 86 -~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~-------~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllD 157 (248)
T COG4138 86 -AMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRST-------NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLD 157 (248)
T ss_pred -hhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhh-------hhcCcccceeeEEeEEEEEecCCCCccceeEEec
Confidence 223444444432 223334455555555554432221 22345999999988765 5677899999
Q ss_pred chh
Q psy2946 259 ERL 261 (455)
Q Consensus 259 Epl 261 (455)
||.
T Consensus 158 EP~ 160 (248)
T COG4138 158 EPM 160 (248)
T ss_pred CCC
Confidence 995
No 382
>KOG2355|consensus
Probab=99.02 E-value=3.5e-10 Score=102.85 Aligned_cols=156 Identities=16% Similarity=0.166 Sum_probs=84.8
Q ss_pred cEEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccE
Q psy2946 66 CSITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPI 145 (455)
Q Consensus 66 ~~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~ 145 (455)
..|++.| .++.|...+ |++.-.|+.. +.|.+.+++|.||||||||+|+|+|...-. +..+.
T Consensus 12 ~aievsg--l~f~y~~~d-P~~~Dfnldl-------------p~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~ 72 (291)
T KOG2355|consen 12 FAIEVSG--LQFKYKVSD-PIFFDFNLDL-------------PAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQ 72 (291)
T ss_pred ceEEEec--cEEecccCC-ceEEEEeecc-------------CCCceEEEEecCCCchhhhHHHhcCccccc---CCeEE
Confidence 4577776 677775433 5544344433 689999999999999999999999987655 44444
Q ss_pred EEecCCCC-------CcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHH-HHHHHHHHHhhccC
Q psy2946 146 FVDLDVGQ-------GHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV-ERLWKSVDERMNKD 217 (455)
Q Consensus 146 ~vDlDpgq-------G~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~-~~l~~~~~~~~~~~ 217 (455)
+.+.||-. |.+.+-|. .+....++.-.-| +.|++++.. +.+..... -+..+.+...+..+
T Consensus 73 VlgrsaFhDt~l~~Sgdl~YLGg--------eW~~~~~~agevp---lq~D~sae~-mifgV~g~dp~Rre~LI~iLDId 140 (291)
T KOG2355|consen 73 VLGRSAFHDTSLESSGDLSYLGG--------EWSKTVGIAGEVP---LQGDISAEH-MIFGVGGDDPERREKLIDILDID 140 (291)
T ss_pred EcCcCccccccccccCceeEecc--------ccccccccccccc---ccccccHHH-HHhhccCCChhHhhhhhhheecc
Confidence 44555422 22221111 1111111111122 333444322 11111000 01112222222222
Q ss_pred CCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 218 SKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 218 ~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...+. ...|.||+.|+.|+..|...-+|+++||-+
T Consensus 141 l~WRm---------HkvSDGqrRRVQicMGLL~PfkVLLLDEVT 175 (291)
T KOG2355|consen 141 LRWRM---------HKVSDGQRRRVQICMGLLKPFKVLLLDEVT 175 (291)
T ss_pred ceEEE---------eeccccchhhhHHHHhcccceeEEEeeeeE
Confidence 22111 012459999999999999999999999853
No 383
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.01 E-value=3e-10 Score=109.95 Aligned_cols=144 Identities=18% Similarity=0.091 Sum_probs=81.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHH-----HHhcC---CC---------CCCccEEEecCCCCCcCC-CCCeeecccccc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLN-----YAVRM---PG---------LNRKPIFVDLDVGQGHVS-VPGTIGALVIER 169 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~-----~~~~~---~~---------~~~~~~~vDlDpgqG~i~-~~G~~~~~~~~~ 169 (455)
+.|..++|+|.+|||||||++.+.- .+... ++ .-..+++||-.|-..+-. .|.+.. ...+
T Consensus 19 p~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ty~--~~~~ 96 (261)
T cd03271 19 PLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPATYT--GVFD 96 (261)
T ss_pred cCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHHHHH--HHHH
Confidence 7899999999999999999996631 11000 00 012355666555332210 111100 0000
Q ss_pred cc----------------ccCCCCcccCceEEEecCCCcccCHHHHHHHHH-HHHHHHHHhhccCCCCCcccEEEecCCC
Q psy2946 170 PA----------------TIEDGFSQLAPIVYNYGHLTPNANLELYQHCVE-RLWKSVDERMNKDSKTNSSGMIINTCGW 232 (455)
Q Consensus 170 ~~----------------~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~-~l~~~~~~~~~~~~~~~~s~~iint~g~ 232 (455)
.+ .....|..++. ..+..+|+.+++.++..... .......+.++. .....+.+..
T Consensus 97 ~ir~~fC~~C~G~r~~~~~l~~~~~g~~i--~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL------~~l~l~~~~~ 168 (261)
T cd03271 97 EIRELFCEVCKGKRYNRETLEVRYKGKSI--ADVLDMTVEEALEFFENIPKIARKLQTLCDVGL------GYIKLGQPAT 168 (261)
T ss_pred HHHHhcCccccccccCHHHHhcCcCCCCH--HHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCC------chhhhcCccc
Confidence 00 01122333343 45667888888888765422 112223333332 1122345556
Q ss_pred ccCCcHHHHHHHHHHcCCC---EEEEecCchh
Q psy2946 233 IKGDGFKCLMACAKSLRVD---NILVLDQERL 261 (455)
Q Consensus 233 ~~s~G~~q~~~ia~al~~~---~~vll~DEpl 261 (455)
.+|+|++||++||++|..+ |.++|+|||+
T Consensus 169 ~LSgGe~QRl~LAraL~~~~~~p~lllLDEPt 200 (261)
T cd03271 169 TLSGGEAQRIKLAKELSKRSTGKTLYILDEPT 200 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCcEEEEECCC
Confidence 6777999999999999986 7999999996
No 384
>KOG0066|consensus
Probab=99.00 E-value=1.2e-10 Score=116.01 Aligned_cols=124 Identities=22% Similarity=0.161 Sum_probs=74.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.-..+++|+||||.|||||+++|.|.+ ||..|+..-+.. ..+||.-|...-.+-
T Consensus 611 DmdSRiaIVGPNGVGKSTlLkLL~Gkl---------------~P~~GE~RKnhr-----------L~iG~FdQh~~E~L~ 664 (807)
T KOG0066|consen 611 DMDSRIAIVGPNGVGKSTLLKLLIGKL---------------DPNDGELRKNHR-----------LRIGWFDQHANEALN 664 (807)
T ss_pred cccceeEEECCCCccHHHHHHHHhcCC---------------CCCcchhhccce-----------eeeechhhhhHHhhc
Confidence 345799999999999999999999985 455888754433 234554343222344
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhhH
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYN 263 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~~ 263 (455)
+..|+.+.+.....+--+-+...+-.++...... .--|-|.+| ||+-|+++|..-...|+|+|+|||+.|
T Consensus 665 ~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAH-TikikdLSG-----GQKaRValaeLal~~PDvlILDEPTNN 734 (807)
T KOG0066|consen 665 GEETPVEYLQRKFNLPYQEARKQLGTFGLASHAH-TIKIKDLSG-----GQKARVALAELALGGPDVLILDEPTNN 734 (807)
T ss_pred cccCHHHHHHHhcCCChHHHHHHhhhhhhhhccc-eEeeeecCC-----cchHHHHHHHHhcCCCCEEEecCCCCC
Confidence 4444444332211111111222222233222111 112334555 999999999999999999999999743
No 385
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.98 E-value=2.2e-10 Score=107.22 Aligned_cols=119 Identities=15% Similarity=0.020 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCc-e-E-E
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAP-I-V-Y 185 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p-~-~-~ 185 (455)
+| +++|+|+||||||||+++|...+.-. .-++.+.+........ .......+++.+|.+ . . .
T Consensus 22 ~g-~~~i~G~NGsGKTTLl~ai~~~l~G~-----------~~~~~~~~~~~~~~i~---~~~~~~~v~~~f~~~~~~~~~ 86 (204)
T cd03240 22 SP-LTLIVGQNGAGKTTIIEALKYALTGE-----------LPPNSKGGAHDPKLIR---EGEVRAQVKLAFENANGKKYT 86 (204)
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHcCC-----------CCcccccccchHHHHh---CCCCcEEEEEEEEeCCCCEEE
Confidence 44 99999999999999999997443211 0011222210000000 011112234444443 1 1 1
Q ss_pred EecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHH------HHHHHHcCCCEEEEecCc
Q psy2946 186 NYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCL------MACAKSLRVDNILVLDQE 259 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~------~~ia~al~~~~~vll~DE 259 (455)
....+++.+|+.+.. .....+.+ +......|.|++|| +++++++..+|.++++||
T Consensus 87 v~r~~~~~~~~~~~~------~~~~~~~~-------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 87 ITRSLAILENVIFCH------QGESNWPL-------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred EEEEhhHhhceeeec------hHHHHHHH-------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 233346666664421 11111111 22223345599996 789999999999999999
Q ss_pred hh
Q psy2946 260 RL 261 (455)
Q Consensus 260 pl 261 (455)
|+
T Consensus 148 P~ 149 (204)
T cd03240 148 PT 149 (204)
T ss_pred Cc
Confidence 97
No 386
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.96 E-value=6.1e-10 Score=104.90 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+|++++|+|+||||||||+++|+..
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~ 51 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYA 51 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheee
Confidence 5789999999999999999999854
No 387
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.96 E-value=2.2e-10 Score=110.69 Aligned_cols=34 Identities=15% Similarity=-0.034 Sum_probs=28.1
Q ss_pred ecCCCccCCcHHHHHHHHHHcC----CCEEEEecCchh
Q psy2946 228 NTCGWIKGDGFKCLMACAKSLR----VDNILVLDQERL 261 (455)
Q Consensus 228 nt~g~~~s~G~~q~~~ia~al~----~~~~vll~DEpl 261 (455)
+......|+|++||+++|+++. .+|.++++|||+
T Consensus 161 ~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt 198 (251)
T cd03273 161 KESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVD 198 (251)
T ss_pred cccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCC
Confidence 3445566789999999999997 477999999996
No 388
>KOG0060|consensus
Probab=98.93 E-value=2.1e-10 Score=118.24 Aligned_cols=123 Identities=18% Similarity=0.114 Sum_probs=75.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|..++|+||||||||+|+|.|+|+.... +|.++.+..-.. ....|++|-| |+-
T Consensus 459 ~~g~~LLItG~sG~GKtSLlRvlggLWp~~---------------~G~l~k~~~~~~--------~~lfflPQrP--Ymt 513 (659)
T KOG0060|consen 459 PSGQNLLITGPSGCGKTSLLRVLGGLWPST---------------GGKLTKPTDGGP--------KDLFFLPQRP--YMT 513 (659)
T ss_pred cCCCeEEEECCCCCchhHHHHHHhcccccC---------------CCeEEecccCCC--------CceEEecCCC--Ccc
Confidence 589999999999999999999999997655 787766544211 2245666766 332
Q ss_pred cCCCcccCHHHHHHH------------HHH-----HHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCC
Q psy2946 188 GHLTPNANLELYQHC------------VER-----LWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRV 250 (455)
Q Consensus 188 g~~sv~~n~~~~~~~------------~~~-----l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~ 250 (455)
-. |.++.+.+.... +.+ ....+.++.+.-.. ..+.|- .-++|+|++||+++||.|..
T Consensus 514 ~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~----~~~~dW-~dvLS~GEqQRLa~ARLfy~ 587 (659)
T KOG0060|consen 514 LG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQ----QVDWDW-MDVLSPGEQQRLAFARLFYH 587 (659)
T ss_pred cc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCc----hhhccH-HhhcCHHHHHHHHHHHHHhc
Confidence 22 555544443111 000 01112222211100 001110 11357799999999999999
Q ss_pred CEEEEecCchh
Q psy2946 251 DNILVLDQERL 261 (455)
Q Consensus 251 ~~~vll~DEpl 261 (455)
.|++.++||-+
T Consensus 588 kPk~AiLDE~T 598 (659)
T KOG0060|consen 588 KPKFAILDECT 598 (659)
T ss_pred CCceEEeechh
Confidence 99999999975
No 389
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.90 E-value=7e-10 Score=111.51 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=41.3
Q ss_pred CcchhhhHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 84 TPMNYYMNVHIILEKQRSEAEQQ-SKRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 84 t~ml~~~nl~~~~~~~r~~a~~~-~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
..+.+|-.+.+.|++.+..+... ...||+++++||||-|||||+++|+|.+.|+
T Consensus 340 ~~lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd 394 (591)
T COG1245 340 DTLVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD 394 (591)
T ss_pred ceeeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC
Confidence 44566777777777543332222 2789999999999999999999999998877
No 390
>KOG0927|consensus
Probab=98.83 E-value=1.4e-09 Score=111.46 Aligned_cols=119 Identities=17% Similarity=0.002 Sum_probs=72.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
..++++++|||||+|||||+|++.|.+.+. .|.+...-..... +-.|..-...-
T Consensus 414 d~~srvAlVGPNG~GKsTLlKl~~gdl~p~---------------~G~vs~~~H~~~~-----------~y~Qh~~e~ld 467 (614)
T KOG0927|consen 414 DLDSRVALVGPNGAGKSTLLKLITGDLQPT---------------IGMVSRHSHNKLP-----------RYNQHLAEQLD 467 (614)
T ss_pred CcccceeEecCCCCchhhhHHHHhhccccc---------------cccccccccccch-----------hhhhhhHhhcC
Confidence 578999999999999999999999988776 7776543222111 01111100011
Q ss_pred cCCCcccCHHHHHHHH-----HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCV-----ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-----~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
-+.++. .++.... .+....+..+++.... .-+.+--.+|.||+.|+..|+.....|-++++|||+
T Consensus 468 l~~s~l---e~~~~~~~~~~~~e~~r~ilgrfgLtgd------~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPt 537 (614)
T KOG0927|consen 468 LDKSSL---EFMMPKFPDEKELEEMRSILGRFGLTGD------AQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPT 537 (614)
T ss_pred cchhHH---HHHHHhccccchHHHHHHHHHHhCCCcc------ccccchhhcccccchhHHHHHHHhcCCcEEEecCCC
Confidence 112222 2222221 1223334445544322 222333345679999999999999999999999997
No 391
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.79 E-value=9.5e-10 Score=103.54 Aligned_cols=31 Identities=19% Similarity=-0.052 Sum_probs=25.5
Q ss_pred CCccCCcHHHHHHHHHHcCC----CEEEEecCchh
Q psy2946 231 GWIKGDGFKCLMACAKSLRV----DNILVLDQERL 261 (455)
Q Consensus 231 g~~~s~G~~q~~~ia~al~~----~~~vll~DEpl 261 (455)
....+.|++||+++|++++. +|.++++|||+
T Consensus 125 ~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt 159 (212)
T cd03274 125 ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEID 159 (212)
T ss_pred hhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCC
Confidence 34456799999999999963 47899999996
No 392
>KOG0064|consensus
Probab=98.77 E-value=2.4e-09 Score=109.22 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|--++|+||||||||+|.|+|.|+..-. +|.+..|- ...+.|+||-| |+-
T Consensus 506 ~~G~hLLItGPNGCGKSSLfRILggLWPvy---------------~g~L~~P~-----------~~~mFYIPQRP--Yms 557 (728)
T KOG0064|consen 506 EPGMHLLITGPNGCGKSSLFRILGGLWPVY---------------NGLLSIPR-----------PNNIFYIPQRP--YMS 557 (728)
T ss_pred cCCceEEEECCCCccHHHHHHHHhccCccc---------------CCeeecCC-----------CcceEeccCCC--ccC
Confidence 589999999999999999999999986433 66665442 23367778887 332
Q ss_pred cCCCcccCHHHHHHH---H-----HHHHHHHHHhhccCCC-CCcccEEEecCCC--ccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 188 GHLTPNANLELYQHC---V-----ERLWKSVDERMNKDSK-TNSSGMIINTCGW--IKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 188 g~~sv~~n~~~~~~~---~-----~~l~~~~~~~~~~~~~-~~~s~~iint~g~--~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.-|.+|.+-+.... . .+-...+...+..... .+.+|+ --...| ++++|++||+++||.+...|+..+
T Consensus 558 -~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~-da~~dWkd~LsgGekQR~~mARm~yHrPkyal 635 (728)
T KOG0064|consen 558 -GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGW-DAVRDWKDVLSGGEKQRMGMARMFYHRPKYAL 635 (728)
T ss_pred -cCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccCh-hhhccHHhhccchHHHHHHHHHHHhcCcchhh
Confidence 23555544332111 0 0001111111111000 001110 001223 347799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+||-+
T Consensus 636 LDEcT 640 (728)
T KOG0064|consen 636 LDECT 640 (728)
T ss_pred hhhhh
Confidence 99964
No 393
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.70 E-value=4e-09 Score=101.63 Aligned_cols=30 Identities=17% Similarity=-0.026 Sum_probs=26.1
Q ss_pred CccCCcHHHHHHHHHHcCCC----EEEEecCchh
Q psy2946 232 WIKGDGFKCLMACAKSLRVD----NILVLDQERL 261 (455)
Q Consensus 232 ~~~s~G~~q~~~ia~al~~~----~~vll~DEpl 261 (455)
..+|+|++||++|+++++.+ |.++|+|||+
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt 187 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVD 187 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEeccc
Confidence 45677999999999999864 8999999996
No 394
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.69 E-value=2.6e-08 Score=92.75 Aligned_cols=33 Identities=9% Similarity=-0.128 Sum_probs=28.1
Q ss_pred cCCCccCCcHHHHHHHHHHc----CCCEEEEecCchh
Q psy2946 229 TCGWIKGDGFKCLMACAKSL----RVDNILVLDQERL 261 (455)
Q Consensus 229 t~g~~~s~G~~q~~~ia~al----~~~~~vll~DEpl 261 (455)
.+....|.||+||++||+++ ..+|.++|+|||+
T Consensus 105 ~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~ 141 (198)
T cd03276 105 RDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFD 141 (198)
T ss_pred CcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcc
Confidence 34445667999999999999 5899999999997
No 395
>KOG0927|consensus
Probab=98.69 E-value=2.6e-09 Score=109.53 Aligned_cols=30 Identities=30% Similarity=0.482 Sum_probs=27.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
..|++++|+|+|||||||++++|.+...|.
T Consensus 99 ~~g~rygLiG~nG~Gkst~L~~i~~~e~P~ 128 (614)
T KOG0927|consen 99 NRGRRYGLIGPNGSGKSTFLRAIAGREVPI 128 (614)
T ss_pred cCCceEEEEcCCCCcHhHHHHHHhcCCCCC
Confidence 689999999999999999999999976654
No 396
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.65 E-value=3.8e-09 Score=96.39 Aligned_cols=139 Identities=15% Similarity=0.077 Sum_probs=89.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc----ccccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER----PATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~----~~~~~~~~~~q~p~ 183 (455)
.+||+-+++|++|||||-.+|.|+|.... .|.+. ...+.++....+....+ -+...++++||+|.
T Consensus 31 nEGEi~GLVGESGSGKSLiAK~Ic~v~kd----nW~vT-------ADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~ 99 (330)
T COG4170 31 NEGEIRGLVGESGSGKSLIAKAICGVNKD----NWRVT-------ADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred ccceeeeeeccCCCchhHHHHHHhccccc----ceEEE-------hhhcccccchhhcCChHHhhhhhccchhhhhcCch
Confidence 48999999999999999999999998653 35544 45566665544433222 23345678999996
Q ss_pred EEEecCCCccc----CHHH--H-----H--HHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCC
Q psy2946 184 VYNYGHLTPNA----NLEL--Y-----Q--HCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRV 250 (455)
Q Consensus 184 ~~~~g~~sv~~----n~~~--~-----~--~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~ 250 (455)
+.+-+..++.. |+-. | . ...++.+-++..+++..+.. .|..........|+-|++.||.|++.
T Consensus 100 sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHk----DIM~SYP~ElTeGE~QKVMIA~A~An 175 (330)
T COG4170 100 SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK----DIMRSYPYELTEGECQKVMIAIALAN 175 (330)
T ss_pred hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHH----HHHHhCcchhccCcceeeeeehhhcc
Confidence 65554433321 1111 0 0 01234455555565543321 22333444555688889999999999
Q ss_pred CEEEEecCchh
Q psy2946 251 DNILVLDQERL 261 (455)
Q Consensus 251 ~~~vll~DEpl 261 (455)
.|.++|.|||.
T Consensus 176 qPrLLIADEPT 186 (330)
T COG4170 176 QPRLLIADEPT 186 (330)
T ss_pred CCceEeccCCC
Confidence 99999999996
No 397
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.63 E-value=2.5e-08 Score=103.33 Aligned_cols=133 Identities=14% Similarity=0.075 Sum_probs=93.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc-cccccccCCCCcccCce-EE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV-IERPATIEDGFSQLAPI-VY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~-~~~~~~~~~~~~~q~p~-~~ 185 (455)
.+||+++|.|--|||+|=|++.|.|...+. +|+|.++|...... +.+.+...++|++.+-. ..
T Consensus 283 r~GEIlGiaGLvGaGRTEl~~~lfG~~~~~---------------~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~G 347 (500)
T COG1129 283 RAGEILGIAGLVGAGRTELARALFGARPAS---------------SGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEG 347 (500)
T ss_pred eCCcEEEEeccccCCHHHHHHHHhCCCcCC---------------CceEEECCEEccCCCHHHHHHcCCEeCCcccccCc
Confidence 699999999999999999999999975555 89999999954322 23345567788885432 36
Q ss_pred EecCCCcccCHHHHH-HH------H-----HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEE
Q psy2946 186 NYGHLTPNANLELYQ-HC------V-----ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNI 253 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~-~~------~-----~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~ 253 (455)
++..+++.+|+.+.. .. + ...++.+.+++... ... .+.+-..+|+|.+|++.|+|.|..+|+
T Consensus 348 l~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik----~~s--~~~~v~~LSGGNQQKVvlarwL~~~p~ 421 (500)
T COG1129 348 LVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIK----TPS--PEQPIGTLSGGNQQKVVLARWLATDPK 421 (500)
T ss_pred CcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcc----cCC--ccchhhcCCchhhhhHHHHHHHhcCCC
Confidence 788889999987751 11 0 11223333333221 111 123333456699999999999999999
Q ss_pred EEecCchh
Q psy2946 254 LVLDQERL 261 (455)
Q Consensus 254 vll~DEpl 261 (455)
|+|+|||+
T Consensus 422 vLilDEPT 429 (500)
T COG1129 422 VLILDEPT 429 (500)
T ss_pred EEEECCCC
Confidence 99999996
No 398
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.55 E-value=1.2e-07 Score=88.28 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
..|++++|+||||||||||+|+|++..
T Consensus 23 ~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 23 EKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 467999999999999999999999865
No 399
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.45 E-value=2e-07 Score=109.36 Aligned_cols=35 Identities=14% Similarity=-0.109 Sum_probs=29.7
Q ss_pred EecCCCccCCcHHHHHHHHHHcC---CCEEEEecCchh
Q psy2946 227 INTCGWIKGDGFKCLMACAKSLR---VDNILVLDQERL 261 (455)
Q Consensus 227 int~g~~~s~G~~q~~~ia~al~---~~~~vll~DEpl 261 (455)
.+.+...+|+||+||++||++|. .+|.++|+|||+
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPT 840 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPT 840 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCC
Confidence 34555567789999999999997 699999999995
No 400
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.41 E-value=4.3e-07 Score=102.01 Aligned_cols=35 Identities=17% Similarity=0.042 Sum_probs=30.1
Q ss_pred EecCCCccCCcHHHHHHHHHHcCCCE---EEEecCchh
Q psy2946 227 INTCGWIKGDGFKCLMACAKSLRVDN---ILVLDQERL 261 (455)
Q Consensus 227 int~g~~~s~G~~q~~~ia~al~~~~---~vll~DEpl 261 (455)
.+.+...+|+|++||+.||++|..++ .++|+|||+
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPt 861 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPT 861 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCC
Confidence 34455567789999999999999998 999999996
No 401
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.41 E-value=3e-07 Score=91.85 Aligned_cols=128 Identities=20% Similarity=0.132 Sum_probs=73.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+|++||||||++|+|+|.........+ -|++|.+.+|-.-......... +| -|
T Consensus 407 kpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y-------~p~sg~v~vp~nt~~a~iPge~---------Ep---~f 467 (593)
T COG2401 407 KPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKY-------RPDSGKVEVPKNTVSALIPGEY---------EP---EF 467 (593)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHHHhhccccccc-------CCCCCceeccccchhhccCccc---------cc---cc
Confidence 89999999999999999999999999876522233 3558888877543222111111 11 12
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+..|+.+++.--.. --..+..+..+.+..+.... -..--.+|.||+.|..||+++...|.+++.||-
T Consensus 468 ~~~tilehl~s~tG-D~~~AveILnraGlsDAvly-----Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 468 GEVTILEHLRSKTG-DLNAAVEILNRAGLSDAVLY-----RRKFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred CchhHHHHHhhccC-chhHHHHHHHhhccchhhhh-----hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 22232222111000 00112333333333221000 001112345999999999999999999999874
No 402
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.41 E-value=8.4e-08 Score=96.81 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=28.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
.+|.+++|+|+||-||||.+|+|+|.+.|.
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PN 127 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPN 127 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccC
Confidence 789999999999999999999999998876
No 403
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.38 E-value=9.7e-08 Score=79.34 Aligned_cols=65 Identities=17% Similarity=0.037 Sum_probs=43.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|+.++|+||+|||||||+++|. +|.+.+.|...............++.+|. .|+
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~---------------------~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~ 68 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI---------------------KRKHRLVGDDNVEIREDSKDELIGRNPEL---GLE 68 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh---------------------CCeEEEeeEeHHHhhhhhcCCEEEEechh---cch
Confidence 578999999999999999999986 24566666654433333233334455444 344
Q ss_pred cCCCcccCHHH
Q psy2946 188 GHLTPNANLEL 198 (455)
Q Consensus 188 g~~sv~~n~~~ 198 (455)
+ ++++|+.+
T Consensus 69 ~--ti~~Ni~~ 77 (107)
T cd00820 69 I--RLRLNIFL 77 (107)
T ss_pred h--hHHhhcee
Confidence 4 68888876
No 404
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.34 E-value=1.2e-06 Score=81.55 Aligned_cols=24 Identities=21% Similarity=0.044 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 237 GFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 237 G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
|++++..+++++ .+|.++++|||+
T Consensus 95 g~~~~~~i~~~~-~~p~llllDEp~ 118 (200)
T cd03280 95 HMKNIARILQHA-DPDSLVLLDELG 118 (200)
T ss_pred HHHHHHHHHHhC-CCCcEEEEcCCC
Confidence 899999999886 789999999996
No 405
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.32 E-value=1.1e-06 Score=78.99 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
++.+.+|+|||||||||+++.+.-.....
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~ 48 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGA 48 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34599999999999999999987666544
No 406
>KOG0065|consensus
Probab=98.31 E-value=4.9e-07 Score=101.79 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=96.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|+.++++|+.|||||||++.|+|-.... .-+.|+|+++|........ .....|..|+. ..+
T Consensus 139 ~pg~m~lvLG~pgsG~ttllkal~g~~~~~------------~~~~~~isy~G~~~~e~~~---~~~~aY~~e~D--vH~ 201 (1391)
T KOG0065|consen 139 KPGEMTLVLGPPGSGKTTLLKALAGKLDNF------------LKSSGEITYNGHDLKEFVP---KKTVAYNSEQD--VHF 201 (1391)
T ss_pred cCCceEEEecCCCCchHHHHHHHhCCCccc------------ccCCCceeECCCccccccc---CceEEeccccc--ccc
Confidence 899999999999999999999999976433 1125689998875433222 34467888887 789
Q ss_pred cCCCcccCHHHHHHHH-----------HH----HHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCE
Q psy2946 188 GHLTPNANLELYQHCV-----------ER----LWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDN 252 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-----------~~----l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~ 252 (455)
+++|+++-+++..++. ++ ..+.+.+.++.+. .....+-|-..--.|+|+|.|+.++.++...+
T Consensus 202 p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~--~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~ 279 (1391)
T KOG0065|consen 202 PELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDH--CADTLVGNDMVRGVSGGERKRVSIGEMLVGPA 279 (1391)
T ss_pred ceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchh--hccceecccccccccCcccceeeeeeeeecCc
Confidence 9999999999876541 11 2334444444432 12233334444445679999999999999999
Q ss_pred EEEecCchh
Q psy2946 253 ILVLDQERL 261 (455)
Q Consensus 253 ~vll~DEpl 261 (455)
.++..||..
T Consensus 280 ~~~~~De~t 288 (1391)
T KOG0065|consen 280 SILFWDEIT 288 (1391)
T ss_pred ceeeeeccc
Confidence 999999973
No 407
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.29 E-value=1.6e-06 Score=80.89 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
..|++++|+||||||||||+|+|++..
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHHHH
Confidence 467899999999999999999999543
No 408
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.23 E-value=1.1e-06 Score=85.62 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=34.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeec
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGA 164 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~ 164 (455)
..++|+|++|||||||++.|++.+.+. +|++.++|....
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---------------~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---------------ISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---------------CceEEECCEEee
Confidence 688999999999999999999997655 899999997654
No 409
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.16 E-value=6.3e-07 Score=92.30 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCC-cCCCCCeeeccc
Q psy2946 93 HIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQG-HVSVPGTIGALV 166 (455)
Q Consensus 93 ~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG-~i~~~G~~~~~~ 166 (455)
....+..-..+++++ .+|++++||||+|||||||+| .++..+. +| +|.++|+.+...
T Consensus 11 ~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---------------sGg~I~ldg~~~~~~ 72 (504)
T TIGR03238 11 KRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---------------EGYEFFLDATHSFSP 72 (504)
T ss_pred chHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---------------CCCEEEECCEECCCC
Confidence 333343334556553 899999999999999999999 5554443 66 699999876654
No 410
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.15 E-value=3.5e-06 Score=79.41 Aligned_cols=32 Identities=6% Similarity=-0.177 Sum_probs=25.0
Q ss_pred CCCccCCcHHHHHHHHHH----cCCCEEEEecCchh
Q psy2946 230 CGWIKGDGFKCLMACAKS----LRVDNILVLDQERL 261 (455)
Q Consensus 230 ~g~~~s~G~~q~~~ia~a----l~~~~~vll~DEpl 261 (455)
....+|.||+|++.++.+ +..+|+++|+|||+
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~ 158 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEIN 158 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEeccc
Confidence 345567799999876654 45899999999997
No 411
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.11 E-value=4.6e-06 Score=76.30 Aligned_cols=28 Identities=21% Similarity=0.008 Sum_probs=24.2
Q ss_pred cCCcHHHHHHHHHHcC----CCEEEEecCchh
Q psy2946 234 KGDGFKCLMACAKSLR----VDNILVLDQERL 261 (455)
Q Consensus 234 ~s~G~~q~~~ia~al~----~~~~vll~DEpl 261 (455)
.|.|++|++.+++++. .+|.++++|||.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~ 126 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEID 126 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 3449999999999985 689999999996
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.07 E-value=4.8e-06 Score=93.55 Aligned_cols=35 Identities=17% Similarity=0.049 Sum_probs=29.5
Q ss_pred EecCCCccCCcHHHHHHHHHHcCC---CEEEEecCchh
Q psy2946 227 INTCGWIKGDGFKCLMACAKSLRV---DNILVLDQERL 261 (455)
Q Consensus 227 int~g~~~s~G~~q~~~ia~al~~---~~~vll~DEpl 261 (455)
.+.+...+|+||+||+.||++|.. ++.++|+|||+
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPt 859 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPT 859 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCC
Confidence 355556677899999999999996 58999999996
No 413
>KOG0066|consensus
Probab=98.04 E-value=3.6e-06 Score=84.64 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=29.8
Q ss_pred ecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 228 NTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 228 nt~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
+.|-.-.|+|.++|+.+||||-..|-++++|||+.
T Consensus 407 ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTN 441 (807)
T KOG0066|consen 407 ERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTN 441 (807)
T ss_pred cCCccccCCceeeehhHHHHHhcCceeeeecCCcc
Confidence 44445557799999999999999999999999963
No 414
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.98 E-value=1.6e-05 Score=74.90 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.+++|.||||+|||||+|.++..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 78999999999999999999843
No 415
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.98 E-value=8.8e-06 Score=81.22 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=39.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq 153 (455)
.++.+++++||||+||||++..|++++.+. +++|.++|.|+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEecCccc
Confidence 357899999999999999999999999888 8999999999854
No 416
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.97 E-value=9.7e-06 Score=76.20 Aligned_cols=36 Identities=17% Similarity=-0.027 Sum_probs=27.3
Q ss_pred EecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 227 INTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 227 int~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
+.++.....+-++++..||+++..+|.++++|||+.
T Consensus 146 ~e~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~ 181 (215)
T PTZ00132 146 YDISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPAL 181 (215)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHhhcccceecCCccc
Confidence 344443333347788999999999999999999974
No 417
>KOG0062|consensus
Probab=97.96 E-value=2.3e-06 Score=87.82 Aligned_cols=122 Identities=17% Similarity=0.103 Sum_probs=68.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
....++.++|+||+||||+++++.+-+.+. .|.+...+. ..+++.+|... -++
T Consensus 388 e~~sRi~~vg~ng~gkst~lKi~~~~l~~~---------------rgi~~~~~r-----------~ri~~f~Qhhv-d~l 440 (582)
T KOG0062|consen 388 ESDSRISRVGENGDGKSTLLKILKGDLTPT---------------RGIVGRHPR-----------LRIKYFAQHHV-DFL 440 (582)
T ss_pred chhhhhheeccCchhHHHHHHHHhccCCcc---------------cceeeeccc-----------ceecchhHhhh-hHH
Confidence 455789999999999999999999865443 454433322 22344334221 010
Q ss_pred cCCCcccCHHHHHHHH-HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCV-ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
++++.. +.+..... ...-+++.+.++. ...++.+...+-..+|+||+-|+++|.....+|-++++|||.
T Consensus 441 -~~~v~~-vd~~~~~~pG~~~ee~r~hl~~---~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPT 510 (582)
T KOG0062|consen 441 -DKNVNA-VDFMEKSFPGKTEEEIRRHLGS---FGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPT 510 (582)
T ss_pred -HHHhHH-HHHHHHhCCCCCHHHHHHHHHh---cCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCC
Confidence 111100 11111111 0011223333321 123333333332235679999999999999999999999996
No 418
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.95 E-value=1.9e-05 Score=77.59 Aligned_cols=52 Identities=33% Similarity=0.358 Sum_probs=34.5
Q ss_pred cchhhhHHHHHHHHHHHHHHhc----c--CCCCEEEEEcCCCCcHHHHHHHHHHHHhc
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQ----S--KRGPITMIVGPQDVGKSTLCHILLNYAVR 136 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~----~--~~G~~v~IvG~nGsGKSTL~r~L~~~~~~ 136 (455)
|+..+.+++..-.+.+..+... . +...+++|.|+||||||||+++|.+++..
T Consensus 31 pl~~~~~~~~~~~~~~~~~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 31 PLSRLLNFYISSNLRRQAVLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4455556665543333222221 1 33458999999999999999999999863
No 419
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.91 E-value=1e-05 Score=82.96 Aligned_cols=133 Identities=16% Similarity=0.118 Sum_probs=95.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeec--cccccccccCCCCcccCce-E
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGA--LVIERPATIEDGFSQLAPI-V 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~--~~~~~~~~~~~~~~~q~p~-~ 184 (455)
..||+++|.|-.|-|-+-|+..|+|+..+. +|.|.++|+... ....+......+|+|.+-. .
T Consensus 282 r~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---------------~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~ 346 (501)
T COG3845 282 RAGEIVGIAGVAGNGQSELVEAISGLRKPA---------------SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGH 346 (501)
T ss_pred ecCcEEEEEecCCCCHHHHHHHHhCCCccC---------------CceEEECCEeccccCCHHHHHhcCCccCChhhccC
Confidence 689999999999999999999999997666 799999999751 1223334456788887652 3
Q ss_pred EEecCCCcccCHHHHHHH--------------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCC
Q psy2946 185 YNYGHLTPNANLELYQHC--------------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRV 250 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~--------------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~ 250 (455)
.+...+|+.+|+.+.... +...+..+.+++... ..++ +++.-.+|+|.+||+-+||.+..
T Consensus 347 Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr---~~~~---~~~a~~LSGGNqQK~IlaREl~~ 420 (501)
T COG3845 347 GLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVR---APSP---DAPARSLSGGNQQKLILARELAR 420 (501)
T ss_pred ccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCcc---CCCC---CcchhhcCCcceehhhhhhhhcc
Confidence 567788889988775432 233344444444322 1111 22334456799999999999999
Q ss_pred CEEEEecCchh
Q psy2946 251 DNILVLDQERL 261 (455)
Q Consensus 251 ~~~vll~DEpl 261 (455)
+|+++|..+|+
T Consensus 421 ~p~lLI~~qPT 431 (501)
T COG3845 421 RPDLLIAAQPT 431 (501)
T ss_pred CCCEEEEcCCC
Confidence 99999999885
No 420
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.91 E-value=8.5e-06 Score=75.04 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=27.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
..|+.++|+|++|||||||++.|+++..+.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~ 52 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPD 52 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 578999999999999999999999997654
No 421
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.86 E-value=0.00011 Score=75.92 Aligned_cols=121 Identities=24% Similarity=0.293 Sum_probs=71.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecC
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGH 189 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~ 189 (455)
..+++++|++||||||++.-|+.++... |++|++|++|+....- ..-+ +.+.... .-| ++..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~---G~kV~lV~~D~~R~aA----~eQL----k~~a~~~----~vp---~~~~ 161 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRK---GFKPCLVCADTFRAGA----FDQL----KQNATKA----RIP---FYGS 161 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEcCcccchhH----HHHH----HHHhhcc----CCe---EEee
Confidence 3589999999999999999999998877 8999999999876311 0000 0001111 123 2322
Q ss_pred CCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCC--cHHHHHHHHHHcCCCEEEEecCc
Q psy2946 190 LTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGD--GFKCLMACAKSLRVDNILVLDQE 259 (455)
Q Consensus 190 ~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~--G~~q~~~ia~al~~~~~vll~DE 259 (455)
.+. .++.- ...+..+.... ....-++|||+|..... =++.+..++++..++..++++|-
T Consensus 162 ~~~-~dp~~---i~~~~l~~~~~-------~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda 222 (429)
T TIGR01425 162 YTE-SDPVK---IASEGVEKFKK-------ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDG 222 (429)
T ss_pred cCC-CCHHH---HHHHHHHHHHh-------CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEecc
Confidence 121 12211 11111111111 12346899999965432 34556667778888888888874
No 422
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.84 E-value=1.5e-05 Score=76.29 Aligned_cols=41 Identities=27% Similarity=0.498 Sum_probs=30.7
Q ss_pred EEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCC
Q psy2946 115 IVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSV 158 (455)
Q Consensus 115 IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~ 158 (455)
|+||.||||||+++.+..++... ++++.+|++||+.-.+-+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~---~~~~~~vNLDPa~~~~~y 41 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN---GRDVYIVNLDPAVENLPY 41 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT----S-EEEEE--TT-S--SS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc---cCCceEEEcchHhccccc
Confidence 68999999999999999999888 999999999999876544
No 423
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.81 E-value=1.4e-05 Score=74.73 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=25.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVR 136 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~ 136 (455)
..|++++|+||||+||||++|++++...-
T Consensus 27 ~~~~~~~l~G~n~~GKstll~~i~~~~~l 55 (204)
T cd03282 27 GSSRFHIITGPNMSGKSTYLKQIALLAIM 55 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999987643
No 424
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.80 E-value=1.9e-05 Score=74.89 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
++++++|.||||+||||++|+++-.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH
Confidence 6789999999999999999998843
No 425
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.79 E-value=9e-05 Score=72.41 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=24.8
Q ss_pred cCCcHHHHHHHHHHcC---------CCEEEEecCchhh
Q psy2946 234 KGDGFKCLMACAKSLR---------VDNILVLDQERLY 262 (455)
Q Consensus 234 ~s~G~~q~~~ia~al~---------~~~~vll~DEpl~ 262 (455)
.|.|+++++.++++++ .++.++++|||+.
T Consensus 184 lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a 221 (270)
T cd03242 184 GSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLA 221 (270)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcch
Confidence 3679999999999874 6899999999963
No 426
>KOG0063|consensus
Probab=97.78 E-value=3.4e-05 Score=77.73 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=26.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
...+++..+|+||.|||||+++|+|.+.++
T Consensus 365 sdSeiivmlgEngtgkTTfi~mlag~~~pd 394 (592)
T KOG0063|consen 365 SDSEIIVMLGENGTGKTTFIRMLAGRLKPD 394 (592)
T ss_pred CCceeEEEEccCCcchhHHHHHHhcCCCCC
Confidence 456789999999999999999999987665
No 427
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.76 E-value=8.1e-05 Score=70.88 Aligned_cols=30 Identities=37% Similarity=0.459 Sum_probs=27.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
.+..+++|.|+||||||||++.|++.+.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 456799999999999999999999999877
No 428
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.74 E-value=3.7e-05 Score=69.91 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=35.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
++|++++|+|.+||||||+++.|++.+... ++++.++|.|
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~---g~~v~~id~D 41 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREA---GYPVEVLDGD 41 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEcCc
Confidence 478999999999999999999999998776 7777888776
No 429
>KOG1532|consensus
Probab=97.72 E-value=0.00013 Score=69.64 Aligned_cols=137 Identities=19% Similarity=0.261 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++..+++++|-.|||||||+.-|...+... ...|.+|+|||.--++-+|-.+-....-+.-.....|.. .| .
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~---~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~L-GP----N 88 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAK---KTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQL-GP----N 88 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhc---cCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCC-CC----C
Confidence 456789999999999999999999998877 777899999998777766544211000000000001100 11 1
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCcc-----CCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIK-----GDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~-----s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
|. +-..+.++...+.+....+.++.. ...-++|||||.+. ..|.-.--.+|..+ +..++.+.|-|
T Consensus 89 Gg--I~TsLNLF~tk~dqv~~~iek~~~-----~~~~~liDTPGQIE~FtWSAsGsIIte~lass~-ptvv~YvvDt~ 158 (366)
T KOG1532|consen 89 GG--IVTSLNLFATKFDQVIELIEKRAE-----EFDYVLIDTPGQIEAFTWSASGSIITETLASSF-PTVVVYVVDTP 158 (366)
T ss_pred cc--hhhhHHHHHHHHHHHHHHHHHhhc-----ccCEEEEcCCCceEEEEecCCccchHhhHhhcC-CeEEEEEecCC
Confidence 21 223445555444444443333322 24568999999543 22554333444443 66677777765
No 430
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.72 E-value=3.9e-05 Score=68.04 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=35.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq 153 (455)
+++++|++||||||+++.++..+.+. ++++.++|.|+++
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~---g~~v~ii~~D~~~ 39 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR---GKRVAVLAIDPSS 39 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEeCCCC
Confidence 37899999999999999999999888 9999999999865
No 431
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.71 E-value=4e-05 Score=75.11 Aligned_cols=28 Identities=11% Similarity=-0.121 Sum_probs=24.0
Q ss_pred cCCcHHHHHHHHHHcCC----CEEEEecCchh
Q psy2946 234 KGDGFKCLMACAKSLRV----DNILVLDQERL 261 (455)
Q Consensus 234 ~s~G~~q~~~ia~al~~----~~~vll~DEpl 261 (455)
.|+|++||+++|+++.. +|.++++|||+
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~ 202 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEID 202 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCc
Confidence 57799999999986543 99999999996
No 432
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.71 E-value=8.1e-05 Score=70.29 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.++++|+||||+|||||+|++++..
T Consensus 30 ~~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 30 RQILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHH
Confidence 3799999999999999999998764
No 433
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.69 E-value=4e-05 Score=72.59 Aligned_cols=25 Identities=40% Similarity=0.462 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVR 136 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~ 136 (455)
+++|.|+||||||||++.|++.+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 4799999999999999999999864
No 434
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.64 E-value=9e-05 Score=68.17 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHH-HHHhcC
Q psy2946 113 TMIVGPQDVGKSTLCHILL-NYAVRM 137 (455)
Q Consensus 113 v~IvG~nGsGKSTL~r~L~-~~~~~~ 137 (455)
++|.|+||+|||||+|.++ +.....
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~ 27 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQ 27 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHH
Confidence 6899999999999999999 554443
No 435
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.64 E-value=5.3e-05 Score=70.95 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=25.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
++|.+++|+|++|||||||++.|++.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999999999864
No 436
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.63 E-value=7.3e-05 Score=74.19 Aligned_cols=43 Identities=26% Similarity=0.169 Sum_probs=40.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq 153 (455)
..+++++|+|++|||||||++.|+..+... ++++.++++||..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~---~~~v~~i~~D~~~ 74 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRR---GLKVAVIAVDPSS 74 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecCCCC
Confidence 578999999999999999999999998888 9999999999976
No 437
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.62 E-value=5.7e-05 Score=70.11 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCC
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDV 151 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDp 151 (455)
+++|.|++|||||||+++|.+.+ . +.++.++..|.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~---~~~~~v~~~D~ 35 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--G---NPKVVIISQDS 35 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--C---CCCeEEEEecc
Confidence 47999999999999999999987 3 45666666663
No 438
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.62 E-value=8.3e-05 Score=66.44 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=40.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeec
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGA 164 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~ 164 (455)
+++|+|++|||||||++.|+..+... |++++++.-|.+..++..+|..+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~---G~~V~viK~~~~~~~~d~~~~D~~ 50 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR---GYRVATIKHDHHDFDIDKNGKDSY 50 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccccccCCCccccHH
Confidence 47899999999999999999999877 899999998866555544465543
No 439
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.61 E-value=7.5e-05 Score=69.43 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDV 151 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDp 151 (455)
+++..++|+|.+|||||||++.|.+.+... +....++|.|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~---~~~~~~ld~d~ 62 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHEL---GVSTYLLDGDN 62 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhC---CCCEEEEcCEe
Confidence 588999999999999999999999988655 44444444443
No 440
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.59 E-value=8.7e-05 Score=69.49 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDV 151 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDp 151 (455)
.++.+++|.|++|||||||++.|++.+ . +..+.+++.|.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l--~---~~~~~~i~~D~ 42 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL--G---DESIAVIPQDS 42 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh--C---CCceEEEeCCc
Confidence 367899999999999999999999986 2 44566666654
No 441
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.57 E-value=9.8e-05 Score=55.02 Aligned_cols=29 Identities=38% Similarity=0.560 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
.|+.++|.|+|||||||++..+.=.+.+.
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 56799999999999999999998777543
No 442
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.0001 Score=74.75 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=37.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq 153 (455)
.+.+++|+||+|+||||++..|+..+... +.++.++|+|+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~---GkkVglI~aDt~R 281 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSR 281 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEEecCCcc
Confidence 34689999999999999999999988777 8899999999865
No 443
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.00011 Score=74.18 Aligned_cols=43 Identities=26% Similarity=0.246 Sum_probs=39.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq 153 (455)
.++++++++||+|+||||++.-|+..+... +.+|.++++|+..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~---g~~V~lItaDtyR 246 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQ---NRTVGFITTDTFR 246 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCccC
Confidence 568899999999999999999999988777 8899999999874
No 444
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.54 E-value=0.00045 Score=66.60 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=26.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
.+|++++|+|++|+|||||++.++|...
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 6899999999999999999999999764
No 445
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.54 E-value=9.5e-05 Score=62.85 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=25.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
+..++|+||+|+||||+++.|++.+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999999987544
No 446
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.53 E-value=0.00011 Score=71.73 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=37.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDV 151 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDp 151 (455)
.++.+++++|++|+||||++.-|+..+... +++|+++|+|+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~---g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ---GKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeCCC
Confidence 345799999999999999999999988877 89999999998
No 447
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.52 E-value=0.00011 Score=76.96 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=34.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCC-CccEEEecCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLN-RKPIFVDLDV 151 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~-~~~~~vDlDp 151 (455)
.+|.+++++||||+||||++..|++++.... | .++.+++.|+
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~--G~~kV~LI~~Dt 296 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRH--GASKVALLTTDS 296 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhc--CCCeEEEEeCCc
Confidence 4688999999999999999999999885431 3 3688888886
No 448
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.52 E-value=0.00011 Score=73.45 Aligned_cols=43 Identities=23% Similarity=0.180 Sum_probs=39.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQG 154 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG 154 (455)
..-+++|+|++|||||||+..|...+... ++++.++..||.+.
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~---g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQ---GHKVAVLAVDPSST 97 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEeCCCcc
Confidence 44589999999999999999999999887 99999999999764
No 449
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.51 E-value=0.00014 Score=65.91 Aligned_cols=53 Identities=21% Similarity=0.190 Sum_probs=41.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeec
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGA 164 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~ 164 (455)
.-++++|+|++|||||||++.|...+.+. +.++..|--+....++..+|..+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~---g~~vg~Ik~~~~~~~~d~~g~Ds~ 57 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR---GIRPGLIKHTHHDMDVDKPGKDSY 57 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc---CCeEEEEEEcCCCcccCCCCcHHH
Confidence 34689999999999999999999998877 778888866655545555665443
No 450
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.51 E-value=0.00044 Score=62.78 Aligned_cols=26 Identities=42% Similarity=0.565 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+.+++.|+|+||||||||+-.|+-..
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhhc
Confidence 67999999999999999999998654
No 451
>KOG1533|consensus
Probab=97.50 E-value=9.5e-05 Score=69.01 Aligned_cols=45 Identities=24% Similarity=0.485 Sum_probs=40.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 113 TMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 113 v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
.+|+||.||||||.|.-+..++... |+++..|++||..-.+.++-
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~---gr~~~vVNLDPaNd~~~Y~~ 49 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAI---GRPVAVVNLDPANDNLPYEC 49 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHh---CCceEEEecCCcccCCCCCC
Confidence 3799999999999999999999888 99999999999988776543
No 452
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.48 E-value=0.00015 Score=65.94 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVD 148 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vD 148 (455)
++|..+.++|++||||||+++.|.+.+... +....++|
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~---~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLK---YSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEe
Confidence 578899999999999999999999988654 44445544
No 453
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.48 E-value=9.6e-05 Score=67.47 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+|++++|+|+|||||||+++.|++++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999999985
No 454
>PRK13768 GTPase; Provisional
Probab=97.43 E-value=0.00019 Score=69.37 Aligned_cols=42 Identities=24% Similarity=0.346 Sum_probs=38.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcC
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i 156 (455)
++.|.|+.|+||||++..++..+... |++++++|+||+...+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~---g~~v~~i~~D~~~~~~ 45 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQ---GYDVAIVNLDPAVEYL 45 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhc---CCceEEEECCCccccC
Confidence 67899999999999999999988877 9999999999987655
No 455
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.43 E-value=0.0034 Score=59.46 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=25.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH-HhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNY-AVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~-~~~~ 137 (455)
.+|++++|+||||+||||++|++++. +.+.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~~~~la~ 59 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVALITIMAQ 59 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999994 4444
No 456
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.42 E-value=0.00023 Score=63.79 Aligned_cols=52 Identities=19% Similarity=0.175 Sum_probs=43.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecc
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGAL 165 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~ 165 (455)
++++|+|++|||||||++.|...+... |.++.++..|....++-.+|..+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~---g~~V~~iK~~~~~~~~d~~g~Ds~~ 53 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR---GLRVAVIKHDHHDFDIDTPGKDSYR 53 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEEecCCcccccCccchHHH
Confidence 478999999999999999999998877 8899999888876666566665433
No 457
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.40 E-value=0.00015 Score=65.96 Aligned_cols=25 Identities=48% Similarity=0.709 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
|.+++|+||+|||||||++.|++..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 6799999999999999999999964
No 458
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.40 E-value=0.00018 Score=66.96 Aligned_cols=27 Identities=41% Similarity=0.704 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+|++++|+||+|||||||++.|++..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999999999975
No 459
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.39 E-value=0.00012 Score=67.44 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
|++++|+||||||||||+|+|++..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 6799999999999999999998863
No 460
>KOG1534|consensus
Probab=97.39 E-value=0.00012 Score=67.38 Aligned_cols=47 Identities=30% Similarity=0.506 Sum_probs=41.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCe
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGT 161 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~ 161 (455)
-.+|+||.||||||+|+.+....... |++.-+|++||.+-.+..+-+
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~---gRs~~vVNLDPAae~f~y~~~ 51 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETV---GRSVHVVNLDPAAEHFNYPVT 51 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhh---CceeEEeecCHHHHhhCCccc
Confidence 46899999999999999999999888 999999999999877766544
No 461
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.39 E-value=0.00022 Score=70.09 Aligned_cols=44 Identities=30% Similarity=0.346 Sum_probs=35.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq 153 (455)
++.+++|+||+|+||||++..|+.++.... .+.+|.+|+.|+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~-g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEH-GNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHc-CCCeEEEEECCccc
Confidence 567999999999999999999998875420 03789999999744
No 462
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.38 E-value=0.00072 Score=70.08 Aligned_cols=121 Identities=19% Similarity=0.213 Sum_probs=70.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHh-cCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecC
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAV-RMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGH 189 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~-~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~ 189 (455)
.+++++|++||||||++.-|+.++. .. |.+|++||+|+...... . + .. .+.... ..| .+. .
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~---g~kV~lV~~D~~R~~a~-~-Q-----L~-~~a~~~----gvp--~~~-~ 161 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQ---GKKVLLVACDLYRPAAI-E-Q-----LK-VLGQQV----GVP--VFA-L 161 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhC---CCeEEEEeccccchHHH-H-H-----HH-HHHHhc----CCc--eEe-c
Confidence 4889999999999999999998865 46 88999999999543210 0 0 00 000001 122 121 1
Q ss_pred CCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCcc--CCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 190 LTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIK--GDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 190 ~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~--s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
.+ ..++.- ......+... .....-+++||+|... ...++....+.+++.++..+++.|--
T Consensus 162 ~~-~~~P~~---i~~~al~~~~-------~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~ 223 (428)
T TIGR00959 162 GK-GQSPVE---IARRALEYAK-------ENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAM 223 (428)
T ss_pred CC-CCCHHH---HHHHHHHHHH-------hcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEecc
Confidence 11 123311 1111111111 1123458999999653 33566777788888898888888743
No 463
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.38 E-value=0.00028 Score=78.48 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=22.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+++|+||||+|||||+|++++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~ 346 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLA 346 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHH
Confidence 799999999999999999999983
No 464
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.37 E-value=0.00026 Score=64.12 Aligned_cols=39 Identities=31% Similarity=0.441 Sum_probs=35.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq 153 (455)
+++++|+.|+||||+++.++..+... +.+++++|+|+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~---g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK---GKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEEcCCCC
Confidence 57899999999999999999988777 8899999999854
No 465
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=97.34 E-value=0.00034 Score=68.36 Aligned_cols=50 Identities=22% Similarity=0.104 Sum_probs=42.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecc
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGAL 165 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~ 165 (455)
++++|+|++|||||||+.-|+..+... | +|++|+.|+.++.- .+|+++..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~---G-~V~~IKhd~h~~~~-~~g~Ds~~ 51 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGR---G-RVGTVKHMDTERLN-PDGTDTGR 51 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhC---C-CEEEEEEcCCCcCC-CCCCCcHH
Confidence 478999999999999999999999887 8 89999999987653 66766544
No 466
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.33 E-value=0.00028 Score=73.30 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=37.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh--cCCCCCCccEEEecCCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV--RMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~--~~~~~~~~~~~vDlDpgq 153 (455)
.+|.+++++||+|+||||++..|+..+. .. +.+|.+||.|+..
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~---g~~V~li~~D~~r 263 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYG---KKKVALITLDTYR 263 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC---CCeEEEEECCccH
Confidence 3477999999999999999999998775 44 6899999999964
No 467
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.33 E-value=0.00031 Score=53.71 Aligned_cols=33 Identities=30% Similarity=0.344 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEec
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDL 149 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDl 149 (455)
+++|+|++||||||+++.|...+ . +.++.++|-
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~---~~~~~~i~~ 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--G---GRSVVVLDE 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--c---CCCEEEEeE
Confidence 36899999999999999999987 3 556666654
No 468
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.32 E-value=0.0026 Score=60.96 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.-+.++|+|++||||||+++.|+|..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCC
Confidence 56789999999999999999999973
No 469
>PRK10867 signal recognition particle protein; Provisional
Probab=97.30 E-value=0.0013 Score=68.25 Aligned_cols=124 Identities=19% Similarity=0.204 Sum_probs=71.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecC
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGH 189 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~ 189 (455)
..+++++|++||||||++.-|+.++... .|.+|++||+|+-..... .-+ . .+....+ -| ++..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~--~G~kV~lV~~D~~R~aa~----eQL---~-~~a~~~g----v~---v~~~ 162 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK--KKKKVLLVAADVYRPAAI----EQL---K-TLGEQIG----VP---VFPS 162 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh--cCCcEEEEEccccchHHH----HHH---H-HHHhhcC----Ce---EEec
Confidence 3588999999999999999998876542 168899999999543210 000 0 0000111 12 2221
Q ss_pred CCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCcc--CCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 190 LTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIK--GDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 190 ~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~--s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
- ...++.-.. ....+... .....-++|||+|... ...++....+.++..++..+++.|.-.
T Consensus 163 ~-~~~dp~~i~---~~a~~~a~-------~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 163 G-DGQDPVDIA---KAALEEAK-------ENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred C-CCCCHHHHH---HHHHHHHH-------hcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 1 112222111 11111111 1123468999999653 335677778888888988888888543
No 470
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.30 E-value=0.00072 Score=60.55 Aligned_cols=54 Identities=22% Similarity=0.114 Sum_probs=48.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI 167 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~ 167 (455)
++++|+|.+|||||||+.-|.-.+... |++|++|--+....++-.+|.++....
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L~~~---G~rVa~iKH~hh~~~~D~~GkDs~r~~ 56 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKLKAR---GYRVATVKHAHHDFDLDKPGKDTYRHR 56 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHHHHhC---CcEEEEEEecCCCCCCCCCCCccchhh
Confidence 589999999999999999999999888 999999999998889999999876543
No 471
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.30 E-value=0.0003 Score=64.49 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
.+|.++.++|++||||||+++.|.+.+... +..+.++|.|
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~---~~~~~~l~~d 55 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESK---GYRVYVLDGD 55 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEECCh
Confidence 689999999999999999999999998654 4444555433
No 472
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.30 E-value=0.00028 Score=62.22 Aligned_cols=38 Identities=26% Similarity=0.457 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCC
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVG 152 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpg 152 (455)
+++|.|++|+||||+++.+++.+... +..++|++.+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK---GGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc---CCEEEEEECCcc
Confidence 36899999999999999999998776 666777666433
No 473
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.29 E-value=0.00026 Score=59.86 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+++|.|++||||||+++.|+..+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999864
No 474
>PLN02796 D-glycerate 3-kinase
Probab=97.27 E-value=0.00031 Score=70.31 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
+++|+|++|||||||++.|.+.+...
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~~~ 127 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFNAT 127 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhccc
Confidence 49999999999999999999998654
No 475
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.25 E-value=0.00024 Score=64.70 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
|++++|+|++||||||+++.|++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999999985
No 476
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=97.22 E-value=0.00045 Score=58.58 Aligned_cols=36 Identities=28% Similarity=0.462 Sum_probs=34.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCC
Q psy2946 113 TMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDV 151 (455)
Q Consensus 113 v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDp 151 (455)
+++.|..|+||||+...|+..+... ++++.++|.||
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~---g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK---GKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEECCc
Confidence 7899999999999999999998777 89999999999
No 477
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.22 E-value=0.00049 Score=67.04 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=37.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq 153 (455)
++++++++|++|+||||+++.|++.+... +.++.++++|+.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~r 115 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSR 115 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCC
Confidence 67999999999999999999999998766 7889999999654
No 478
>PRK14974 cell division protein FtsY; Provisional
Probab=97.21 E-value=0.0004 Score=69.72 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=35.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCC
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVG 152 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpg 152 (455)
+.+++++|++|+||||++..|+.++... +.+|++++.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~---g~~V~li~~Dt~ 179 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKN---GFSVVIAAGDTF 179 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcC
Confidence 4689999999999999999999998877 889999998864
No 479
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.20 E-value=0.00033 Score=62.10 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
+++|+|.+||||||+++.|+..+... +..+.++|.|
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~---g~~~~~i~~d 36 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQR---GRPVYVLDGD 36 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEEcCH
Confidence 47899999999999999999998655 5555555544
No 480
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.18 E-value=0.00025 Score=69.34 Aligned_cols=26 Identities=27% Similarity=0.223 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
+++|+|+||||||||++.|++++.+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~ 26 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSD 26 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 47999999999999999999998654
No 481
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.18 E-value=0.00038 Score=68.66 Aligned_cols=29 Identities=38% Similarity=0.491 Sum_probs=26.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
.+.+++++|++|+|||||++.|+|.....
T Consensus 160 ~~k~~~~~G~sg~GKSTlin~l~~~~~~~ 188 (287)
T cd01854 160 KGKTSVLVGQSGVGKSTLINALLPDLDLA 188 (287)
T ss_pred ccceEEEECCCCCCHHHHHHHHhchhhcc
Confidence 56899999999999999999999987655
No 482
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.15 E-value=0.00056 Score=63.32 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=23.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
+|+|.|++|||||||++.|...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 58999999999999999999998654
No 483
>PRK07667 uridine kinase; Provisional
Probab=97.15 E-value=0.00059 Score=63.19 Aligned_cols=39 Identities=21% Similarity=0.061 Sum_probs=33.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCC
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDV 151 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDp 151 (455)
.-+|+|.|++||||||+++.|...+... +..+.++++|-
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~---~~~~~~i~~Dd 55 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQE---GIPFHIFHIDD 55 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEEcCc
Confidence 3589999999999999999999988766 67777777774
No 484
>PRK08118 topology modulation protein; Reviewed
Probab=97.15 E-value=0.00045 Score=62.48 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+++|+|++|||||||++.|+..+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999875
No 485
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.14 E-value=0.00055 Score=65.46 Aligned_cols=125 Identities=16% Similarity=0.164 Sum_probs=67.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+..+++|.||.|+|||||...|...+... |.+|+++-.||++.- -.|.+.- +..+. .-...+|- .|+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~---g~~VaVlAVDPSSp~--tGGAlLG----DRiRM--~~~~~d~~-vfI 94 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRER---GKRVAVLAVDPSSPF--TGGALLG----DRIRM--QELSRDPG-VFI 94 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHT---T--EEEEEE-GGGGC--C---SS------GGGC--HHHHTSTT-EEE
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhc---CCceEEEEECCCCCC--CCCcccc----cHHHh--cCcCCCCC-EEE
Confidence 456799999999999999999999999888 999999999998641 1222211 11110 00112332 344
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecC
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~D 258 (455)
-.+.-+.++-=.......... +.+. ....-++|.|-|. ||- ++.-+-..|..++++-
T Consensus 95 RS~atRG~lGGls~~t~~~v~-ll~a------aG~D~IiiETVGv----GQs---E~~I~~~aD~~v~v~~ 151 (266)
T PF03308_consen 95 RSMATRGSLGGLSRATRDAVR-LLDA------AGFDVIIIETVGV----GQS---EVDIADMADTVVLVLV 151 (266)
T ss_dssp EEE---SSHHHHHHHHHHHHH-HHHH------TT-SEEEEEEESS----STH---HHHHHTTSSEEEEEEE
T ss_pred eecCcCCCCCCccHhHHHHHH-HHHH------cCCCEEEEeCCCC----Ccc---HHHHHHhcCeEEEEec
Confidence 444445555433333222221 2222 2344688899884 765 3444566777777763
No 486
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.13 E-value=0.00049 Score=62.99 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
+++|.|++|||||||++.|...+... +..+.++.+|
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~---~~~~~~i~~D 36 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN---GIGPVVISLD 36 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc---CCCEEEEehh
Confidence 47999999999999999999988655 5555554443
No 487
>PRK15453 phosphoribulokinase; Provisional
Probab=97.12 E-value=0.00069 Score=65.92 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
.+.++++|.|.+||||||+++.|+..+... +-++.+++.|
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~---~~~~~vi~~D 42 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRE---NINAAVVEGD 42 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhc---CCCeEEEecc
Confidence 367899999999999999999999876544 4445555554
No 488
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.12 E-value=0.00048 Score=61.36 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=33.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
|-++-+.|.+||||||+++.|...+... +.++.++|.|
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~---g~~~~~LDgD 39 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR---GIKVYLLDGD 39 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT---TS-EEEEEHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEecCc
Confidence 5678999999999999999999999888 8888888887
No 489
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.00059 Score=71.83 Aligned_cols=44 Identities=27% Similarity=0.354 Sum_probs=36.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVG 152 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpg 152 (455)
.+|++++|+|++|+||||++..|+..+... ..+.++.+++.|+.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~-~~gkkVaLIdtDty 391 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQ-HAPRDVALVTTDTQ 391 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCceEEEecccc
Confidence 678999999999999999999999876543 01368999999974
No 490
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.00064 Score=69.10 Aligned_cols=42 Identities=31% Similarity=0.447 Sum_probs=34.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh-cCCCCC-CccEEEecCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV-RMPGLN-RKPIFVDLDVG 152 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~-~~~~~~-~~~~~vDlDpg 152 (455)
.+|.+++++||+|+||||++..|++.+. .. | .++.++..|..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~---G~~~V~lit~D~~ 178 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRF---GASKVALLTTDSY 178 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhc---CCCeEEEEecccc
Confidence 6789999999999999999999998764 33 3 47788877765
No 491
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.11 E-value=0.00056 Score=69.87 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
-+++|.|++|||||||++.|.+++...
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~ 239 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVT 239 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 477999999999999999999987654
No 492
>PRK07261 topology modulation protein; Provisional
Probab=97.10 E-value=0.00059 Score=61.96 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.+++|+|++|||||||++.|+..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999999875
No 493
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.00054 Score=75.17 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=34.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHh-cCCCCC-CccEEEecCCC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAV-RMPGLN-RKPIFVDLDVG 152 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~-~~~~~~-~~~~~vDlDpg 152 (455)
+|.+++++||||+||||++..|++.+. .. | .++.+++.|..
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~---G~kkV~lit~Dt~ 226 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVARE---GADQLALLTTDSF 226 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHc---CCCeEEEecCccc
Confidence 578999999999999999999999874 33 4 47889888853
No 494
>PRK09183 transposase/IS protein; Provisional
Probab=97.06 E-value=0.00068 Score=65.85 Aligned_cols=38 Identities=34% Similarity=0.425 Sum_probs=33.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVD 148 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vD 148 (455)
.+|+.++|+||+|+|||+|+..|++.+... |+++.|++
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~---G~~v~~~~ 137 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRA---GIKVRFTT 137 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 578999999999999999999998887776 77777765
No 495
>PRK13949 shikimate kinase; Provisional
Probab=97.05 E-value=0.00061 Score=61.74 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.++|+|++||||||+.+.|+..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999875
No 496
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.04 E-value=0.00077 Score=61.27 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
...++|+|++||||||+++.|++.+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 4579999999999999999999874
No 497
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.04 E-value=0.001 Score=56.95 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=25.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
.+..++|.|++|+||||+++.+++.+...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~ 46 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRP 46 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcC
Confidence 57789999999999999999999987543
No 498
>KOG0780|consensus
Probab=97.04 E-value=0.0034 Score=62.81 Aligned_cols=124 Identities=22% Similarity=0.287 Sum_probs=77.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEec
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYG 188 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g 188 (455)
+..+++++|-+|+||||.|--|+.++.+. ||++++|=.|.-.. ...+-+. . .+.--.-| ||+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkk---G~K~~LvcaDTFRa----gAfDQLk---q-----nA~k~~iP---~yg 161 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKK---GYKVALVCADTFRA----GAFDQLK---Q-----NATKARVP---FYG 161 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhc---CCceeEEeeccccc----chHHHHH---H-----HhHhhCCe---eEe
Confidence 34589999999999999999999999999 99999887765321 1011000 0 00001123 666
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCC--cHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 189 HLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGD--GFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 189 ~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~--G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.-|=.+-.....+. .+.+. +.+..-+|+||+|-.... =++-...+.+|+.||-+|+++|--.
T Consensus 162 syte~dpv~ia~eg----v~~fK-------ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi 225 (483)
T KOG0780|consen 162 SYTEADPVKIASEG----VDRFK-------KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI 225 (483)
T ss_pred cccccchHHHHHHH----HHHHH-------hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 53433322222211 12221 123445899999966532 1445678999999999999999643
No 499
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=97.03 E-value=0.00086 Score=65.34 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=37.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCC
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVS 157 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~ 157 (455)
.+++|.|.-|+||||++--|+..+... |++|++||+|| ||+.+
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~---G~kVLliD~Dp-q~~~t 45 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKL---GKKVLQIGCDP-KHDST 45 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeccC-Ccchh
Confidence 578888999999999999999998888 99999999999 45543
No 500
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.02 E-value=0.0016 Score=67.33 Aligned_cols=28 Identities=32% Similarity=0.278 Sum_probs=26.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
.+|++++|+|++|+|||||+++|++...
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~~ 181 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNAK 181 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccCC
Confidence 7999999999999999999999998753
Done!