Query psy2946
Match_columns 455
No_of_seqs 423 out of 3479
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 21:37:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2npi_A Protein CLP1; CLP1-PCF1 100.0 2.5E-49 8.6E-54 410.7 33.8 400 4-422 34-460 (460)
2 3fvq_A Fe(3+) IONS import ATP- 99.9 1.3E-23 4.5E-28 210.3 -3.2 130 108-261 28-166 (359)
3 3rlf_A Maltose/maltodextrin im 99.8 3.3E-23 1.1E-27 208.8 -3.6 128 108-261 27-161 (381)
4 1z47_A CYSA, putative ABC-tran 99.8 5.7E-23 2E-27 205.6 -2.6 128 108-261 39-173 (355)
5 2pcj_A ABC transporter, lipopr 99.8 5.2E-23 1.8E-27 194.1 -4.8 130 108-261 28-168 (224)
6 3d31_A Sulfate/molybdate ABC t 99.8 9.5E-23 3.2E-27 203.8 -3.2 128 108-261 24-155 (348)
7 3tui_C Methionine import ATP-b 99.8 5.1E-22 1.8E-26 198.9 2.0 130 108-261 52-191 (366)
8 2it1_A 362AA long hypothetical 99.8 2.3E-22 8E-27 201.9 -1.1 128 108-261 27-161 (362)
9 2olj_A Amino acid ABC transpor 99.8 9.7E-23 3.3E-27 196.5 -4.5 129 108-261 48-187 (263)
10 1sgw_A Putative ABC transporte 99.8 7.1E-22 2.4E-26 184.8 1.4 152 63-262 6-162 (214)
11 3gfo_A Cobalt import ATP-bindi 99.8 6.5E-23 2.2E-27 198.9 -6.2 131 108-261 32-171 (275)
12 1oxx_K GLCV, glucose, ABC tran 99.8 1.9E-22 6.7E-27 202.2 -3.5 130 108-261 29-168 (353)
13 1g29_1 MALK, maltose transport 99.8 2.3E-22 7.7E-27 202.9 -3.4 130 108-261 27-167 (372)
14 2yyz_A Sugar ABC transporter, 99.8 1.8E-22 6.2E-27 202.5 -4.3 128 108-261 27-161 (359)
15 3tif_A Uncharacterized ABC tra 99.8 8.2E-22 2.8E-26 187.1 0.2 132 108-262 29-174 (235)
16 1vpl_A ABC transporter, ATP-bi 99.8 1.3E-22 4.3E-27 195.1 -5.6 129 108-261 39-174 (256)
17 1ji0_A ABC transporter; ATP bi 99.8 7.6E-23 2.6E-27 194.9 -7.2 130 108-261 30-167 (240)
18 1v43_A Sugar-binding transport 99.8 3.6E-22 1.2E-26 201.2 -3.2 128 108-261 35-169 (372)
19 4g1u_C Hemin import ATP-bindin 99.8 1.1E-22 3.8E-27 196.6 -6.9 130 108-261 35-175 (266)
20 1g6h_A High-affinity branched- 99.8 8.4E-23 2.9E-27 196.6 -8.6 131 108-262 31-182 (257)
21 1b0u_A Histidine permease; ABC 99.8 2E-22 6.9E-27 194.4 -7.0 131 108-261 30-181 (262)
22 1mv5_A LMRA, multidrug resista 99.8 2.8E-22 9.5E-27 191.4 -7.1 136 108-261 26-167 (243)
23 2ihy_A ABC transporter, ATP-bi 99.8 2.8E-22 9.4E-27 195.1 -10.2 132 108-261 45-189 (279)
24 2d2e_A SUFC protein; ABC-ATPas 99.8 2.3E-21 7.7E-26 185.8 -4.6 132 108-262 27-172 (250)
25 2onk_A Molybdate/tungstate ABC 99.8 6.8E-20 2.3E-24 174.3 5.5 127 108-261 23-154 (240)
26 3nh6_A ATP-binding cassette SU 99.8 2.5E-21 8.7E-26 190.3 -5.1 136 108-261 78-218 (306)
27 3gd7_A Fusion complex of cysti 99.8 4.7E-21 1.6E-25 194.2 -3.6 136 108-262 45-184 (390)
28 2ixe_A Antigen peptide transpo 99.8 6.1E-22 2.1E-26 191.9 -9.7 131 108-261 43-184 (271)
29 2zu0_C Probable ATP-dependent 99.8 3.4E-21 1.2E-25 186.3 -5.1 131 108-261 44-192 (267)
30 2ff7_A Alpha-hemolysin translo 99.8 2.3E-21 7.8E-26 185.4 -6.5 136 108-261 33-173 (247)
31 2nq2_C Hypothetical ABC transp 99.8 4.2E-21 1.4E-25 184.2 -5.4 117 108-261 29-156 (253)
32 2pze_A Cystic fibrosis transme 99.8 7.7E-21 2.6E-25 179.7 -4.8 123 108-261 32-158 (229)
33 2qi9_C Vitamin B12 import ATP- 99.8 4.8E-21 1.6E-25 183.3 -7.2 129 108-261 24-161 (249)
34 3b5x_A Lipid A export ATP-bind 99.8 7E-20 2.4E-24 195.9 0.8 137 108-262 367-509 (582)
35 2cbz_A Multidrug resistance-as 99.8 6.6E-21 2.3E-25 181.1 -6.7 123 108-261 29-155 (237)
36 2ghi_A Transport protein; mult 99.7 5.8E-21 2E-25 184.0 -9.3 135 108-261 44-183 (260)
37 2yz2_A Putative ABC transporte 99.7 2.2E-19 7.6E-24 173.5 0.8 128 108-261 31-166 (266)
38 2pjz_A Hypothetical protein ST 99.7 7.5E-19 2.6E-23 169.3 3.9 124 108-262 29-157 (263)
39 4a82_A Cystic fibrosis transme 99.7 1.4E-19 4.6E-24 193.5 -5.5 163 67-262 339-506 (578)
40 3qf4_A ABC transporter, ATP-bi 99.7 2E-19 6.9E-24 192.4 -4.6 162 67-261 341-507 (587)
41 3b60_A Lipid A export ATP-bind 99.7 1.5E-19 5.1E-24 193.4 -5.7 136 108-261 367-508 (582)
42 2bbs_A Cystic fibrosis transme 99.7 1.6E-19 5.4E-24 176.4 -5.8 141 85-261 39-187 (290)
43 2yl4_A ATP-binding cassette SU 99.7 3.7E-19 1.3E-23 190.8 -6.2 136 108-261 368-511 (595)
44 3qf4_B Uncharacterized ABC tra 99.7 5E-19 1.7E-23 189.8 -8.3 136 108-261 379-519 (598)
45 4f4c_A Multidrug resistance pr 99.7 6E-18 2E-22 195.8 -1.3 162 67-261 1076-1245(1321)
46 4f4c_A Multidrug resistance pr 99.6 4.4E-18 1.5E-22 197.0 -4.6 162 67-261 415-582 (1321)
47 3g5u_A MCG1178, multidrug resi 99.6 1.7E-17 5.9E-22 191.5 -3.7 161 67-261 387-554 (1284)
48 3g5u_A MCG1178, multidrug resi 99.6 6.6E-17 2.3E-21 186.7 -4.1 135 108-261 1057-1199(1284)
49 3bk7_A ABC transporter ATP-bin 99.6 1.6E-15 5.4E-20 162.2 6.4 117 108-261 380-499 (607)
50 3b85_A Phosphate starvation-in 99.5 9.7E-16 3.3E-20 142.5 1.8 114 103-263 15-134 (208)
51 1yqt_A RNAse L inhibitor; ATP- 99.5 3.8E-15 1.3E-19 157.4 5.6 117 108-261 310-429 (538)
52 3ozx_A RNAse L inhibitor; ATP 99.5 1.9E-15 6.3E-20 159.6 0.4 118 108-261 292-413 (538)
53 1yqt_A RNAse L inhibitor; ATP- 99.4 1.6E-14 5.6E-19 152.6 1.2 128 108-261 45-186 (538)
54 3ozx_A RNAse L inhibitor; ATP 99.4 2.5E-14 8.6E-19 151.0 2.2 127 108-261 23-166 (538)
55 3j16_B RLI1P; ribosome recycli 99.4 2.8E-14 9.5E-19 152.4 2.3 131 108-261 101-249 (608)
56 3j16_B RLI1P; ribosome recycli 99.4 8.3E-14 2.8E-18 148.8 5.7 117 108-261 376-495 (608)
57 3bk7_A ABC transporter ATP-bin 99.4 1.2E-14 4.2E-19 155.3 -1.0 129 108-261 115-256 (607)
58 2iw3_A Elongation factor 3A; a 99.3 5.7E-15 2E-19 163.8 -10.0 30 108-137 697-726 (986)
59 3ux8_A Excinuclease ABC, A sub 99.3 3.1E-13 1.1E-17 146.7 1.7 33 229-261 198-232 (670)
60 3aez_A Pantothenate kinase; tr 99.3 8.9E-14 3.1E-18 137.1 -3.2 114 107-263 87-206 (312)
61 3sop_A Neuronal-specific septi 99.3 7.7E-14 2.6E-18 134.8 -5.8 110 112-260 4-122 (270)
62 4gp7_A Metallophosphoesterase; 99.2 2.6E-11 9E-16 108.7 8.3 29 235-263 85-113 (171)
63 1tq4_A IIGP1, interferon-induc 99.2 2.3E-12 7.7E-17 131.4 -0.6 118 108-261 67-194 (413)
64 2v9p_A Replication protein E1; 99.2 1.3E-12 4.3E-17 128.0 -3.2 46 86-134 101-150 (305)
65 2iw3_A Elongation factor 3A; a 99.1 2.5E-11 8.7E-16 134.8 5.0 118 108-261 459-576 (986)
66 1ye8_A Protein THEP1, hypothet 99.1 1.6E-11 5.6E-16 111.0 2.2 31 232-262 75-112 (178)
67 1htw_A HI0065; nucleotide-bind 99.1 1E-10 3.5E-15 103.7 5.6 84 89-198 10-97 (158)
68 3b9q_A Chloroplast SRP recepto 99.0 2.9E-11 1E-15 118.5 1.0 123 108-261 98-230 (302)
69 3ux8_A Excinuclease ABC, A sub 99.0 5.7E-11 2E-15 128.9 2.8 33 229-261 539-574 (670)
70 2og2_A Putative signal recogni 99.0 8.4E-11 2.9E-15 117.7 2.3 123 108-261 155-287 (359)
71 4aby_A DNA repair protein RECN 99.0 1.8E-10 6.2E-15 117.5 3.3 28 234-261 296-325 (415)
72 1z6g_A Guanylate kinase; struc 99.0 1.5E-12 5.2E-17 121.6 -11.2 27 108-134 21-47 (218)
73 2pt7_A CAG-ALFA; ATPase, prote 98.9 2.2E-10 7.7E-15 113.6 3.1 86 108-265 169-254 (330)
74 1rj9_A FTSY, signal recognitio 98.9 3.7E-10 1.3E-14 110.7 4.0 122 109-260 101-231 (304)
75 3e70_C DPA, signal recognition 98.8 3.7E-09 1.3E-13 104.6 6.4 145 108-283 127-280 (328)
76 3pih_A Uvrabc system protein A 98.7 1.6E-09 5.4E-14 120.2 1.6 33 229-261 801-836 (916)
77 2ygr_A Uvrabc system protein A 98.7 1.3E-08 4.4E-13 112.9 7.0 33 229-261 859-894 (993)
78 2r6f_A Excinuclease ABC subuni 98.7 5.9E-09 2E-13 115.2 4.3 33 229-261 841-876 (972)
79 2vf7_A UVRA2, excinuclease ABC 98.7 1.1E-09 3.9E-14 120.3 -1.5 33 229-261 726-761 (842)
80 3szr_A Interferon-induced GTP- 98.7 7E-09 2.4E-13 111.1 4.3 76 109-200 44-122 (608)
81 2jeo_A Uridine-cytidine kinase 98.7 7.4E-10 2.5E-14 105.0 -3.3 27 108-134 23-49 (245)
82 2yhs_A FTSY, cell division pro 98.7 7.1E-09 2.4E-13 107.2 3.6 122 108-258 291-420 (503)
83 2i3b_A HCR-ntpase, human cance 98.6 1.2E-09 4E-14 99.8 -2.7 37 110-163 1-37 (189)
84 2eyu_A Twitching motility prot 98.6 1E-08 3.5E-13 98.3 2.3 29 108-136 23-51 (261)
85 1znw_A Guanylate kinase, GMP k 98.6 1E-08 3.5E-13 94.5 2.1 27 108-134 18-44 (207)
86 3jvv_A Twitching mobility prot 98.6 6.1E-08 2.1E-12 97.0 7.9 30 108-137 121-150 (356)
87 2qm8_A GTPase/ATPase; G protei 98.6 6.5E-08 2.2E-12 96.1 7.9 85 85-182 28-116 (337)
88 1e69_A Chromosome segregation 98.6 2.8E-08 9.7E-13 98.0 5.2 31 231-261 217-251 (322)
89 1p9r_A General secretion pathw 98.5 5.9E-09 2E-13 106.5 -1.6 59 86-149 143-203 (418)
90 2f1r_A Molybdopterin-guanine d 98.5 2E-09 6.9E-14 96.6 -5.7 27 111-137 3-29 (171)
91 2rcn_A Probable GTPase ENGC; Y 98.5 3.4E-08 1.2E-12 98.6 2.4 113 108-249 213-329 (358)
92 2qnr_A Septin-2, protein NEDD5 98.5 4.3E-09 1.5E-13 103.1 -4.4 43 91-137 3-46 (301)
93 1zp6_A Hypothetical protein AT 98.5 1.8E-08 6.1E-13 91.1 -0.4 26 108-133 7-32 (191)
94 2ehv_A Hypothetical protein PH 98.5 1.9E-08 6.4E-13 94.7 -0.3 39 108-149 28-67 (251)
95 1ewq_A DNA mismatch repair pro 98.5 2.3E-07 7.9E-12 101.4 8.3 86 110-260 576-664 (765)
96 1sq5_A Pantothenate kinase; P- 98.4 2E-07 7E-12 91.3 6.9 63 85-150 36-119 (308)
97 1vma_A Cell division protein F 98.4 2.3E-07 7.9E-12 90.8 6.3 43 108-153 102-144 (306)
98 3tr0_A Guanylate kinase, GMP k 98.4 6E-08 2.1E-12 88.5 1.9 27 108-134 5-31 (205)
99 1u0l_A Probable GTPase ENGC; p 98.4 6.9E-08 2.3E-12 94.4 2.3 60 108-182 167-229 (301)
100 1lw7_A Transcriptional regulat 98.4 3.5E-09 1.2E-13 106.4 -7.9 30 108-137 166-197 (365)
101 2qag_B Septin-6, protein NEDD5 98.4 1E-07 3.5E-12 97.1 2.4 27 108-134 38-66 (427)
102 3qf7_A RAD50; ABC-ATPase, ATPa 98.4 4.9E-07 1.7E-11 90.8 7.1 33 229-261 275-313 (365)
103 1cr0_A DNA primase/helicase; R 98.3 5.9E-07 2E-11 87.2 7.0 41 108-150 33-73 (296)
104 2qag_C Septin-7; cell cycle, c 98.3 6.1E-08 2.1E-12 98.9 -0.7 109 112-261 33-149 (418)
105 2gza_A Type IV secretion syste 98.3 1E-07 3.4E-12 95.7 0.3 30 108-137 173-202 (361)
106 1s96_A Guanylate kinase, GMP k 98.3 8.9E-08 3E-12 89.3 -0.4 28 108-135 14-41 (219)
107 2yv5_A YJEQ protein; hydrolase 98.3 4.7E-07 1.6E-11 88.5 4.6 69 108-196 163-240 (302)
108 3c8u_A Fructokinase; YP_612366 98.2 8.9E-07 3.1E-11 81.4 5.0 30 108-137 20-49 (208)
109 1tf7_A KAIC; homohexamer, hexa 98.2 1.5E-06 5.2E-11 91.4 7.4 104 107-262 278-381 (525)
110 2dpy_A FLII, flagellum-specifi 98.2 1.4E-08 4.9E-13 104.3 -8.5 61 85-161 130-193 (438)
111 4a74_A DNA repair and recombin 98.2 3.4E-07 1.2E-11 84.8 0.7 30 107-136 22-51 (231)
112 1nij_A Hypothetical protein YJ 98.1 2.4E-08 8.3E-13 98.4 -7.7 47 110-163 4-50 (318)
113 3thx_B DNA mismatch repair pro 98.1 1.5E-06 5.2E-11 96.5 4.5 28 108-135 671-698 (918)
114 1pui_A ENGB, probable GTP-bind 98.1 1.7E-08 5.7E-13 92.5 -9.5 27 108-134 24-50 (210)
115 3asz_A Uridine kinase; cytidin 98.1 2E-06 6.8E-11 78.9 3.9 38 108-151 4-41 (211)
116 3euj_A Chromosome partition pr 98.1 2.7E-06 9.1E-11 88.1 5.2 40 108-163 28-67 (483)
117 2o8b_B DNA mismatch repair pro 98.0 9.9E-07 3.4E-11 99.3 1.4 25 110-135 789-813 (1022)
118 3kl4_A SRP54, signal recogniti 98.0 1E-05 3.5E-10 82.7 8.8 124 109-261 96-223 (433)
119 1t9h_A YLOQ, probable GTPase E 98.0 4.6E-07 1.6E-11 88.6 -1.5 70 108-196 171-247 (307)
120 1pzn_A RAD51, DNA repair and r 98.0 5.4E-07 1.9E-11 89.9 -1.2 27 108-134 129-155 (349)
121 3a00_A Guanylate kinase, GMP k 98.0 3.7E-06 1.3E-10 75.7 4.5 27 110-136 1-27 (186)
122 2px0_A Flagellar biosynthesis 98.0 5.1E-06 1.7E-10 80.9 5.7 42 108-152 103-145 (296)
123 2obl_A ESCN; ATPase, hydrolase 98.0 2.8E-07 9.7E-12 91.8 -3.4 30 108-137 69-98 (347)
124 3uie_A Adenylyl-sulfate kinase 98.0 4.8E-06 1.6E-10 75.9 4.5 38 108-148 23-60 (200)
125 1wb9_A DNA mismatch repair pro 98.0 6.2E-06 2.1E-10 90.6 6.0 28 108-135 605-632 (800)
126 3tqc_A Pantothenate kinase; bi 97.9 1.2E-05 4.1E-10 79.0 7.3 38 112-150 94-131 (321)
127 2w0m_A SSO2452; RECA, SSPF, un 97.9 7.6E-06 2.6E-10 75.5 5.3 41 108-151 21-61 (235)
128 1rz3_A Hypothetical protein rb 97.9 7.6E-06 2.6E-10 74.7 4.9 41 108-151 20-60 (201)
129 2kjq_A DNAA-related protein; s 97.9 9.5E-06 3.3E-10 70.7 5.2 38 109-149 35-72 (149)
130 2p67_A LAO/AO transport system 97.9 1E-05 3.4E-10 80.4 6.0 66 86-154 30-97 (341)
131 1nlf_A Regulatory protein REPA 97.9 5E-05 1.7E-09 72.8 10.4 28 108-135 28-55 (279)
132 1lvg_A Guanylate kinase, GMP k 97.9 5.6E-06 1.9E-10 75.6 3.4 27 109-135 3-29 (198)
133 3nwj_A ATSK2; P loop, shikimat 97.9 3.4E-06 1.2E-10 80.1 1.8 49 85-134 16-72 (250)
134 1zu4_A FTSY; GTPase, signal re 97.9 1.2E-05 4.2E-10 79.0 5.7 43 108-153 103-145 (320)
135 3thx_A DNA mismatch repair pro 97.9 9.1E-06 3.1E-10 90.6 5.3 27 108-134 660-686 (934)
136 3lnc_A Guanylate kinase, GMP k 97.9 5.4E-06 1.8E-10 77.3 2.8 27 108-134 25-52 (231)
137 1kgd_A CASK, peripheral plasma 97.8 1.1E-05 3.8E-10 72.3 4.4 27 108-134 3-29 (180)
138 3dm5_A SRP54, signal recogniti 97.8 8.5E-05 2.9E-09 75.9 11.4 122 110-260 100-223 (443)
139 1tf7_A KAIC; homohexamer, hexa 97.8 2.8E-06 9.7E-11 89.3 0.2 59 108-182 37-97 (525)
140 1ls1_A Signal recognition part 97.8 1.9E-05 6.3E-10 76.8 5.5 42 109-153 97-138 (295)
141 3ec2_A DNA replication protein 97.8 2.5E-05 8.5E-10 69.7 5.8 30 108-137 36-65 (180)
142 4e22_A Cytidylate kinase; P-lo 97.8 2.6E-06 8.7E-11 80.9 -0.9 30 108-137 25-57 (252)
143 1qhl_A Protein (cell division 97.8 2.4E-06 8.3E-11 79.9 -1.3 37 112-163 29-65 (227)
144 2oap_1 GSPE-2, type II secreti 97.7 8.6E-06 2.9E-10 85.2 2.2 30 108-137 258-287 (511)
145 3qkt_A DNA double-strand break 97.7 6E-05 2E-09 74.6 8.0 32 230-261 245-282 (339)
146 4eun_A Thermoresistant glucoki 97.7 2.1E-05 7.2E-10 71.6 4.3 27 108-134 27-53 (200)
147 1xjc_A MOBB protein homolog; s 97.7 4.3E-05 1.5E-09 68.0 5.6 51 110-163 4-55 (169)
148 1np6_A Molybdopterin-guanine d 97.7 4.2E-05 1.4E-09 68.4 5.6 50 110-162 6-55 (174)
149 2j41_A Guanylate kinase; GMP, 97.6 2.5E-05 8.7E-10 70.9 3.8 28 108-135 4-31 (207)
150 1kag_A SKI, shikimate kinase I 97.6 2.1E-05 7.3E-10 69.3 3.1 26 109-134 3-28 (173)
151 2cvh_A DNA repair and recombin 97.6 3.6E-05 1.2E-09 70.5 4.7 39 107-151 17-55 (220)
152 2www_A Methylmalonic aciduria 97.6 4.2E-05 1.5E-09 76.1 5.5 44 108-154 72-115 (349)
153 2pez_A Bifunctional 3'-phospho 97.6 3.6E-05 1.2E-09 68.5 4.5 38 108-148 3-40 (179)
154 3tau_A Guanylate kinase, GMP k 97.6 3.9E-05 1.3E-09 70.3 4.6 28 108-135 6-33 (208)
155 2yvu_A Probable adenylyl-sulfa 97.6 4.1E-05 1.4E-09 68.6 4.6 40 108-150 11-50 (186)
156 2bdt_A BH3686; alpha-beta prot 97.6 2.8E-05 9.7E-10 69.8 3.5 23 110-132 2-24 (189)
157 1j8m_F SRP54, signal recogniti 97.6 5.5E-05 1.9E-09 73.5 5.1 42 110-154 98-139 (297)
158 2ewv_A Twitching motility prot 97.5 4.8E-05 1.6E-09 76.4 4.4 30 108-137 134-163 (372)
159 1n0w_A DNA repair protein RAD5 97.5 6.9E-05 2.4E-09 69.6 5.0 27 108-134 22-48 (243)
160 2bbw_A Adenylate kinase 4, AK4 97.5 1.7E-05 5.9E-10 74.6 0.8 23 109-131 26-48 (246)
161 2ffh_A Protein (FFH); SRP54, s 97.5 8.1E-05 2.8E-09 75.9 5.7 123 109-260 97-221 (425)
162 1knq_A Gluconate kinase; ALFA/ 97.5 5.8E-05 2E-09 66.8 3.8 27 108-134 6-32 (175)
163 2dr3_A UPF0273 protein PH0284; 97.4 0.00011 3.7E-09 68.4 5.2 42 108-152 21-62 (247)
164 2qt1_A Nicotinamide riboside k 97.4 8.7E-05 3E-09 67.6 4.0 36 108-150 19-54 (207)
165 3vaa_A Shikimate kinase, SK; s 97.4 0.00012 4E-09 66.5 4.6 27 108-134 23-49 (199)
166 3cr8_A Sulfate adenylyltranfer 97.4 6.6E-05 2.2E-09 79.1 3.1 30 108-137 367-396 (552)
167 2vp4_A Deoxynucleoside kinase; 97.3 6.6E-05 2.3E-09 69.9 2.1 26 108-133 18-43 (230)
168 3kta_A Chromosome segregation 97.3 0.00014 4.8E-09 64.7 4.1 28 109-137 26-53 (182)
169 1yrb_A ATP(GTP)binding protein 97.3 0.00026 8.9E-09 66.7 6.1 44 109-156 13-56 (262)
170 3ney_A 55 kDa erythrocyte memb 97.3 0.00016 5.4E-09 66.0 4.1 27 108-134 17-43 (197)
171 3p32_A Probable GTPase RV1496/ 97.2 0.00058 2E-08 67.9 8.0 44 108-154 77-120 (355)
172 1m7g_A Adenylylsulfate kinase; 97.2 0.00016 5.4E-09 66.3 3.5 39 108-148 23-61 (211)
173 3t34_A Dynamin-related protein 97.2 0.00073 2.5E-08 67.2 8.6 25 109-133 33-57 (360)
174 3hr8_A Protein RECA; alpha and 97.2 0.00023 7.9E-09 70.8 4.9 42 108-152 59-100 (356)
175 1odf_A YGR205W, hypothetical 3 97.2 0.00032 1.1E-08 67.9 5.7 30 108-137 29-58 (290)
176 1cke_A CK, MSSA, protein (cyti 97.2 0.00026 9E-09 65.1 4.4 26 109-134 4-29 (227)
177 2v3c_C SRP54, signal recogniti 97.2 0.00019 6.5E-09 73.4 3.7 41 111-154 100-140 (432)
178 2p5t_B PEZT; postsegregational 97.2 0.00046 1.6E-08 65.1 6.1 27 108-134 30-56 (253)
179 1sxj_E Activator 1 40 kDa subu 97.1 0.0017 5.7E-08 63.9 10.3 58 109-182 35-92 (354)
180 3t61_A Gluconokinase; PSI-biol 97.1 0.00036 1.2E-08 63.2 4.7 26 109-134 17-42 (202)
181 2zr9_A Protein RECA, recombina 97.1 0.00041 1.4E-08 68.9 5.1 41 108-151 59-99 (349)
182 1ixz_A ATP-dependent metallopr 97.1 0.00066 2.3E-08 63.8 6.1 45 86-134 25-73 (254)
183 1a7j_A Phosphoribulokinase; tr 97.0 0.00029 9.9E-09 68.2 3.4 39 109-150 4-42 (290)
184 1kht_A Adenylate kinase; phosp 97.0 0.00059 2E-08 60.7 5.1 27 110-136 3-29 (192)
185 3kb2_A SPBC2 prophage-derived 97.0 0.00061 2.1E-08 59.5 5.0 24 111-134 2-25 (173)
186 1ni3_A YCHF GTPase, YCHF GTP-b 97.0 0.00021 7.1E-09 72.1 2.1 49 108-160 18-67 (392)
187 2qor_A Guanylate kinase; phosp 96.9 0.00041 1.4E-08 63.1 3.4 27 108-134 10-36 (204)
188 1jjv_A Dephospho-COA kinase; P 96.9 0.00038 1.3E-08 63.2 3.2 21 112-132 4-24 (206)
189 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00057 2E-08 64.8 4.6 39 109-150 3-41 (260)
190 2if2_A Dephospho-COA kinase; a 96.9 0.00041 1.4E-08 62.8 3.3 21 112-132 3-23 (204)
191 1oix_A RAS-related protein RAB 96.9 0.00041 1.4E-08 62.2 3.3 26 111-136 30-55 (191)
192 1iy2_A ATP-dependent metallopr 96.9 0.00098 3.3E-08 63.6 6.2 45 86-134 49-97 (278)
193 2w58_A DNAI, primosome compone 96.9 0.0021 7.2E-08 57.9 8.1 36 111-149 55-90 (202)
194 3end_A Light-independent proto 96.9 0.00085 2.9E-08 65.0 5.7 42 108-152 39-80 (307)
195 1qhx_A CPT, protein (chloramph 96.9 0.00066 2.3E-08 59.9 4.5 25 110-134 3-27 (178)
196 1nks_A Adenylate kinase; therm 96.9 0.00069 2.4E-08 60.3 4.5 34 112-148 3-36 (194)
197 1svm_A Large T antigen; AAA+ f 96.9 0.0012 4E-08 66.3 6.6 28 107-134 166-193 (377)
198 2f9l_A RAB11B, member RAS onco 96.9 0.0005 1.7E-08 61.9 3.5 23 112-134 7-29 (199)
199 1gvn_B Zeta; postsegregational 96.9 0.0014 4.7E-08 63.2 6.8 27 108-134 31-57 (287)
200 1in4_A RUVB, holliday junction 96.9 0.00042 1.4E-08 68.3 3.1 26 109-134 50-75 (334)
201 1g3q_A MIND ATPase, cell divis 96.9 0.00095 3.2E-08 61.7 5.3 43 111-156 3-46 (237)
202 3lda_A DNA repair protein RAD5 96.9 0.00072 2.5E-08 68.4 4.7 43 108-150 176-221 (400)
203 2j37_W Signal recognition part 96.9 0.00085 2.9E-08 69.8 5.3 41 110-153 101-141 (504)
204 3q9l_A Septum site-determining 96.9 0.00095 3.3E-08 62.6 5.3 45 110-157 2-47 (260)
205 1y63_A LMAJ004144AAA protein; 96.8 0.00089 3E-08 59.8 4.7 26 108-133 8-33 (184)
206 2x8a_A Nuclear valosin-contain 96.8 0.00049 1.7E-08 65.9 3.2 25 108-134 44-68 (274)
207 3trf_A Shikimate kinase, SK; a 96.8 0.00082 2.8E-08 59.7 4.3 26 109-134 4-29 (185)
208 3bos_A Putative DNA replicatio 96.8 0.0013 4.4E-08 60.4 5.6 39 109-150 51-89 (242)
209 3cio_A ETK, tyrosine-protein k 96.8 0.0027 9.3E-08 61.5 8.1 46 108-156 102-148 (299)
210 3m6a_A ATP-dependent protease 96.8 0.0013 4.4E-08 69.2 6.2 46 89-136 86-134 (543)
211 3cm0_A Adenylate kinase; ATP-b 96.7 0.00072 2.4E-08 60.1 3.2 26 109-134 3-28 (186)
212 1via_A Shikimate kinase; struc 96.7 0.00075 2.6E-08 59.6 3.2 23 112-134 6-28 (175)
213 2ze6_A Isopentenyl transferase 96.7 0.0013 4.3E-08 62.2 4.8 23 112-134 3-25 (253)
214 1cp2_A CP2, nitrogenase iron p 96.7 0.0017 6E-08 61.3 5.8 42 112-156 3-44 (269)
215 4ag6_A VIRB4 ATPase, type IV s 96.7 0.0014 4.9E-08 65.8 5.4 39 109-150 34-72 (392)
216 1wcv_1 SOJ, segregation protei 96.7 0.00096 3.3E-08 62.9 3.8 44 109-156 5-49 (257)
217 2plr_A DTMP kinase, probable t 96.7 0.002 6.8E-08 58.2 5.7 28 109-136 3-30 (213)
218 2xj4_A MIPZ; replication, cell 96.7 0.0012 4.1E-08 63.4 4.4 43 111-156 5-48 (286)
219 3kjh_A CO dehydrogenase/acetyl 96.6 0.0012 4.2E-08 61.2 4.3 41 112-156 2-42 (254)
220 3la6_A Tyrosine-protein kinase 96.6 0.0045 1.5E-07 59.6 8.3 46 108-156 90-136 (286)
221 2iyv_A Shikimate kinase, SK; t 96.6 0.001 3.6E-08 59.0 3.6 25 110-134 2-26 (184)
222 2gj8_A MNME, tRNA modification 96.6 0.00081 2.8E-08 59.2 2.7 25 109-133 3-27 (172)
223 3bfv_A CAPA1, CAPB2, membrane 96.6 0.005 1.7E-07 58.7 8.5 46 108-156 80-126 (271)
224 1w1w_A Structural maintenance 96.6 0.0012 4E-08 67.4 4.2 29 109-137 25-53 (430)
225 1l8q_A Chromosomal replication 96.6 0.0027 9.2E-08 61.8 6.2 38 109-149 36-73 (324)
226 1zuh_A Shikimate kinase; alpha 96.5 0.0019 6.5E-08 56.4 4.3 25 110-134 7-31 (168)
227 2wsm_A Hydrogenase expression/ 96.5 0.0025 8.7E-08 58.0 5.3 41 109-153 29-69 (221)
228 1q3t_A Cytidylate kinase; nucl 96.5 0.0018 6.3E-08 60.1 4.4 27 108-134 14-40 (236)
229 2z0h_A DTMP kinase, thymidylat 96.5 0.003 1E-07 56.4 5.6 33 112-147 2-34 (197)
230 2ph1_A Nucleotide-binding prot 96.5 0.0028 9.6E-08 59.9 5.6 45 109-156 17-62 (262)
231 2xxa_A Signal recognition part 96.5 0.0027 9.3E-08 64.8 5.9 43 110-154 100-142 (433)
232 1v5w_A DMC1, meiotic recombina 96.5 0.0023 8E-08 63.2 5.2 44 108-151 120-166 (343)
233 1nn5_A Similar to deoxythymidy 96.5 0.0029 1E-07 57.3 5.5 30 108-137 7-36 (215)
234 1f2t_A RAD50 ABC-ATPase; DNA d 96.5 0.0015 5.1E-08 56.6 3.3 24 111-134 24-47 (149)
235 3ea0_A ATPase, para family; al 96.5 0.0029 9.9E-08 58.6 5.5 47 109-157 3-50 (245)
236 2r8r_A Sensor protein; KDPD, P 96.4 0.0034 1.2E-07 58.2 5.8 43 109-155 4-47 (228)
237 2pbr_A DTMP kinase, thymidylat 96.4 0.0027 9.4E-08 56.4 5.1 26 112-137 2-27 (195)
238 1u94_A RECA protein, recombina 96.4 0.0026 8.9E-08 63.3 5.3 41 108-151 61-101 (356)
239 2afh_E Nitrogenase iron protei 96.4 0.003 1E-07 60.5 5.6 43 111-156 3-45 (289)
240 4fcw_A Chaperone protein CLPB; 96.4 0.0031 1.1E-07 60.7 5.7 38 111-151 48-85 (311)
241 1gtv_A TMK, thymidylate kinase 96.4 0.00078 2.7E-08 61.2 1.4 33 112-147 2-34 (214)
242 2vf7_A UVRA2, excinuclease ABC 96.4 0.00015 5.2E-09 79.8 -4.2 34 228-261 374-409 (842)
243 2o5v_A DNA replication and rep 96.4 0.0017 5.7E-08 64.7 3.7 26 108-134 25-50 (359)
244 1uj2_A Uridine-cytidine kinase 96.4 0.0024 8.1E-08 60.1 4.5 24 111-134 23-46 (252)
245 2wji_A Ferrous iron transport 96.4 0.0016 5.4E-08 56.7 3.0 23 111-133 4-26 (165)
246 2c95_A Adenylate kinase 1; tra 96.4 0.0023 8E-08 57.0 4.1 27 108-134 7-33 (196)
247 2grj_A Dephospho-COA kinase; T 96.4 0.0025 8.7E-08 57.6 4.3 26 109-134 11-36 (192)
248 3lw7_A Adenylate kinase relate 96.4 0.0019 6.5E-08 56.1 3.4 20 111-130 2-21 (179)
249 2pt5_A Shikimate kinase, SK; a 96.3 0.0025 8.7E-08 55.4 4.2 23 112-134 2-24 (168)
250 2rhm_A Putative kinase; P-loop 96.3 0.002 6.9E-08 57.3 3.6 26 109-134 4-29 (193)
251 3ake_A Cytidylate kinase; CMP 96.3 0.0025 8.6E-08 57.4 4.2 24 111-134 3-26 (208)
252 4eaq_A DTMP kinase, thymidylat 96.3 0.0023 7.7E-08 59.6 3.9 28 108-135 24-51 (229)
253 4dzz_A Plasmid partitioning pr 96.3 0.0027 9.3E-08 57.1 4.3 40 112-154 3-43 (206)
254 2jaq_A Deoxyguanosine kinase; 96.3 0.0025 8.5E-08 57.2 4.0 23 112-134 2-24 (205)
255 1e6c_A Shikimate kinase; phosp 96.3 0.0021 7.1E-08 56.2 3.2 24 111-134 3-26 (173)
256 3n70_A Transport activator; si 96.3 0.0052 1.8E-07 52.5 5.7 30 108-137 22-51 (145)
257 3cwq_A Para family chromosome 96.3 0.0043 1.5E-07 56.6 5.4 38 112-153 2-40 (209)
258 3k9g_A PF-32 protein; ssgcid, 96.3 0.0029 9.9E-08 59.8 4.4 43 108-154 25-68 (267)
259 2wwf_A Thymidilate kinase, put 96.3 0.0039 1.3E-07 56.3 5.1 29 108-136 8-36 (212)
260 3k1j_A LON protease, ATP-depen 96.3 0.0029 1E-07 67.4 4.8 43 108-153 58-100 (604)
261 3iij_A Coilin-interacting nucl 96.3 0.0025 8.5E-08 56.3 3.7 27 108-134 9-35 (180)
262 2wjg_A FEOB, ferrous iron tran 96.2 0.0022 7.7E-08 56.5 3.2 23 111-133 8-30 (188)
263 2v54_A DTMP kinase, thymidylat 96.2 0.0028 9.6E-08 57.0 3.8 26 109-134 3-28 (204)
264 1ly1_A Polynucleotide kinase; 96.2 0.0027 9.1E-08 55.7 3.6 22 111-132 3-24 (181)
265 2r6a_A DNAB helicase, replicat 96.2 0.0048 1.6E-07 63.4 5.9 41 108-151 201-242 (454)
266 1tev_A UMP-CMP kinase; ploop, 96.2 0.0029 1E-07 56.2 3.6 25 110-134 3-27 (196)
267 2oze_A ORF delta'; para, walke 96.1 0.0036 1.2E-07 60.1 4.4 43 109-154 33-78 (298)
268 1hyq_A MIND, cell division inh 96.1 0.0055 1.9E-07 57.6 5.5 43 111-156 3-46 (263)
269 1aky_A Adenylate kinase; ATP:A 96.1 0.0038 1.3E-07 57.2 4.3 26 109-134 3-28 (220)
270 3r20_A Cytidylate kinase; stru 96.1 0.0032 1.1E-07 58.8 3.8 26 109-134 8-33 (233)
271 1udx_A The GTP-binding protein 96.1 0.0013 4.5E-08 66.8 1.1 26 108-133 155-180 (416)
272 1sxj_C Activator 1 40 kDa subu 96.1 0.0027 9.3E-08 62.4 3.3 36 113-151 49-84 (340)
273 1vht_A Dephospho-COA kinase; s 96.1 0.0032 1.1E-07 57.5 3.6 23 110-132 4-26 (218)
274 2bwj_A Adenylate kinase 5; pho 96.1 0.0036 1.2E-07 56.0 3.9 26 109-134 11-36 (199)
275 2zej_A Dardarin, leucine-rich 96.1 0.0023 7.9E-08 56.7 2.5 22 112-133 4-25 (184)
276 1jbk_A CLPB protein; beta barr 96.1 0.0053 1.8E-07 53.7 4.9 28 109-136 42-69 (195)
277 1uf9_A TT1252 protein; P-loop, 96.1 0.0032 1.1E-07 56.5 3.3 25 109-133 7-31 (203)
278 1xp8_A RECA protein, recombina 96.0 0.0052 1.8E-07 61.3 5.1 42 108-152 72-113 (366)
279 1lv7_A FTSH; alpha/beta domain 96.0 0.0067 2.3E-07 56.8 5.6 25 110-134 45-69 (257)
280 2vli_A Antibiotic resistance p 96.0 0.0031 1.1E-07 55.6 2.9 26 109-134 4-29 (183)
281 2qtf_A Protein HFLX, GTP-bindi 96.0 0.0019 6.5E-08 64.4 1.7 46 112-161 181-226 (364)
282 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0071 2.4E-07 59.9 5.6 28 108-135 20-49 (359)
283 3fwy_A Light-independent proto 95.9 0.007 2.4E-07 59.1 5.4 44 109-155 47-90 (314)
284 1ega_A Protein (GTP-binding pr 95.9 0.0024 8.1E-08 61.9 2.0 25 109-133 7-31 (301)
285 1ex7_A Guanylate kinase; subst 95.9 0.004 1.4E-07 56.1 3.3 21 113-133 4-24 (186)
286 2cdn_A Adenylate kinase; phosp 95.9 0.0057 2E-07 55.1 4.4 27 108-134 18-44 (201)
287 3fb4_A Adenylate kinase; psych 95.9 0.0046 1.6E-07 56.3 3.8 23 112-134 2-24 (216)
288 3bh0_A DNAB-like replicative h 95.9 0.009 3.1E-07 58.2 5.9 41 107-150 65-105 (315)
289 2p65_A Hypothetical protein PF 95.9 0.0059 2E-07 53.4 4.1 28 109-136 42-69 (187)
290 1zak_A Adenylate kinase; ATP:A 95.8 0.0049 1.7E-07 56.5 3.5 26 109-134 4-29 (222)
291 1zd8_A GTP:AMP phosphotransfer 95.8 0.005 1.7E-07 56.7 3.5 26 109-134 6-31 (227)
292 3qks_A DNA double-strand break 95.8 0.0049 1.7E-07 56.1 3.4 25 111-135 24-48 (203)
293 2zts_A Putative uncharacterize 95.8 0.0075 2.6E-07 55.7 4.7 42 108-152 28-70 (251)
294 3lxx_A GTPase IMAP family memb 95.8 0.0048 1.7E-07 57.2 3.2 27 109-135 28-54 (239)
295 1fnn_A CDC6P, cell division co 95.7 0.01 3.5E-07 58.7 5.8 36 112-149 46-81 (389)
296 3dl0_A Adenylate kinase; phosp 95.7 0.0053 1.8E-07 55.9 3.4 22 112-133 2-23 (216)
297 1f2t_B RAD50 ABC-ATPase; DNA d 95.7 0.0023 7.7E-08 55.5 0.8 34 228-261 52-91 (148)
298 1ukz_A Uridylate kinase; trans 95.7 0.0057 1.9E-07 55.0 3.4 25 109-133 14-38 (203)
299 2qgz_A Helicase loader, putati 95.7 0.0085 2.9E-07 58.2 4.9 37 110-149 152-189 (308)
300 1z2a_A RAS-related protein RAB 95.7 0.0062 2.1E-07 52.2 3.5 23 111-133 6-28 (168)
301 2dyk_A GTP-binding protein; GT 95.7 0.0056 1.9E-07 52.2 3.2 23 111-133 2-24 (161)
302 2f6r_A COA synthase, bifunctio 95.7 0.0068 2.3E-07 58.1 4.1 23 110-132 75-97 (281)
303 2lkc_A Translation initiation 95.7 0.0071 2.4E-07 52.5 3.9 26 108-133 6-31 (178)
304 1qf9_A UMP/CMP kinase, protein 95.7 0.0063 2.2E-07 53.8 3.6 25 110-134 6-30 (194)
305 3tlx_A Adenylate kinase 2; str 95.7 0.0067 2.3E-07 56.7 3.9 27 108-134 27-53 (243)
306 2ged_A SR-beta, signal recogni 95.7 0.0078 2.7E-07 53.2 4.2 26 108-133 46-71 (193)
307 3fkq_A NTRC-like two-domain pr 95.7 0.0083 2.8E-07 59.9 4.7 45 108-156 141-186 (373)
308 3zq6_A Putative arsenical pump 95.6 0.0098 3.3E-07 58.2 5.1 44 109-156 11-56 (324)
309 2dy1_A Elongation factor G; tr 95.6 0.0051 1.8E-07 66.3 3.3 28 108-135 7-34 (665)
310 3d3q_A TRNA delta(2)-isopenten 95.6 0.009 3.1E-07 58.8 4.8 34 111-152 8-41 (340)
311 4edh_A DTMP kinase, thymidylat 95.6 0.011 3.7E-07 54.3 5.0 36 109-147 5-40 (213)
312 2chg_A Replication factor C sm 95.6 0.011 3.8E-07 53.0 5.0 27 111-137 39-65 (226)
313 2hf9_A Probable hydrogenase ni 95.6 0.01 3.6E-07 54.1 4.9 40 109-152 37-76 (226)
314 2z43_A DNA repair and recombin 95.6 0.011 3.7E-07 57.8 5.2 27 108-134 105-131 (324)
315 3ice_A Transcription terminati 95.6 0.0095 3.3E-07 59.6 4.7 29 108-136 172-200 (422)
316 1kao_A RAP2A; GTP-binding prot 95.6 0.0076 2.6E-07 51.4 3.6 22 112-133 5-26 (167)
317 1z0j_A RAB-22, RAS-related pro 95.5 0.0077 2.7E-07 51.7 3.6 22 112-133 8-29 (170)
318 2bjv_A PSP operon transcriptio 95.5 0.016 5.4E-07 54.5 6.0 39 109-150 28-66 (265)
319 1u8z_A RAS-related protein RAL 95.5 0.0077 2.6E-07 51.4 3.5 23 111-133 5-27 (168)
320 3umf_A Adenylate kinase; rossm 95.5 0.0084 2.9E-07 55.3 3.9 27 108-134 27-53 (217)
321 2ce2_X GTPase HRAS; signaling 95.5 0.0074 2.5E-07 51.4 3.3 22 112-133 5-26 (166)
322 2r6f_A Excinuclease ABC subuni 95.5 0.0028 9.5E-08 70.3 0.7 34 228-261 499-534 (972)
323 2ohf_A Protein OLA1, GTP-bindi 95.5 0.0044 1.5E-07 62.3 2.1 26 108-133 20-45 (396)
324 1c1y_A RAS-related protein RAP 95.5 0.0081 2.8E-07 51.4 3.5 22 112-133 5-26 (167)
325 1z08_A RAS-related protein RAB 95.5 0.0082 2.8E-07 51.6 3.5 23 111-133 7-29 (170)
326 3cf0_A Transitional endoplasmi 95.5 0.0086 2.9E-07 57.8 4.1 27 108-134 47-73 (301)
327 1ek0_A Protein (GTP-binding pr 95.5 0.0082 2.8E-07 51.4 3.5 22 112-133 5-26 (170)
328 4a1f_A DNAB helicase, replicat 95.5 0.014 4.8E-07 57.5 5.5 43 107-152 43-85 (338)
329 3be4_A Adenylate kinase; malar 95.5 0.0086 2.9E-07 54.8 3.7 26 109-134 4-29 (217)
330 2erx_A GTP-binding protein DI- 95.5 0.0077 2.6E-07 51.7 3.2 23 111-133 4-26 (172)
331 1g16_A RAS-related protein SEC 95.4 0.0079 2.7E-07 51.6 3.3 22 112-133 5-26 (170)
332 3a8t_A Adenylate isopentenyltr 95.4 0.011 3.8E-07 58.0 4.7 37 109-153 39-75 (339)
333 3k53_A Ferrous iron transport 95.4 0.0065 2.2E-07 57.6 3.0 24 111-134 4-27 (271)
334 3lv8_A DTMP kinase, thymidylat 95.4 0.015 5.1E-07 54.3 5.3 33 108-143 25-57 (236)
335 3ld9_A DTMP kinase, thymidylat 95.4 0.01 3.4E-07 55.0 4.1 42 108-152 19-61 (223)
336 1ky3_A GTP-binding protein YPT 95.4 0.0089 3E-07 52.0 3.6 24 110-133 8-31 (182)
337 2orw_A Thymidine kinase; TMTK, 95.4 0.014 4.8E-07 52.2 4.9 35 109-147 2-37 (184)
338 1wms_A RAB-9, RAB9, RAS-relate 95.4 0.0092 3.1E-07 51.8 3.6 23 111-133 8-30 (177)
339 2xb4_A Adenylate kinase; ATP-b 95.4 0.0096 3.3E-07 54.8 3.8 23 112-134 2-24 (223)
340 2fn4_A P23, RAS-related protei 95.4 0.0086 2.9E-07 52.0 3.3 23 111-133 10-32 (181)
341 3ug7_A Arsenical pump-driving 95.4 0.013 4.3E-07 58.0 4.9 44 109-156 24-68 (349)
342 2b8t_A Thymidine kinase; deoxy 95.4 0.015 5.2E-07 53.7 5.1 37 108-147 10-46 (223)
343 2nzj_A GTP-binding protein REM 95.4 0.008 2.7E-07 52.0 3.0 23 111-133 5-27 (175)
344 4tmk_A Protein (thymidylate ki 95.4 0.017 5.9E-07 53.0 5.3 29 109-137 2-30 (213)
345 1e4v_A Adenylate kinase; trans 95.3 0.0093 3.2E-07 54.3 3.6 23 112-134 2-24 (214)
346 2ius_A DNA translocase FTSK; n 95.3 0.012 4.2E-07 61.1 4.9 46 108-155 165-211 (512)
347 2qby_A CDC6 homolog 1, cell di 95.3 0.01 3.5E-07 58.4 4.1 30 108-137 43-72 (386)
348 1ak2_A Adenylate kinase isoenz 95.3 0.013 4.3E-07 54.2 4.4 27 108-134 14-40 (233)
349 1r2q_A RAS-related protein RAB 95.3 0.01 3.4E-07 50.9 3.5 22 112-133 8-29 (170)
350 1ltq_A Polynucleotide kinase; 95.3 0.011 3.7E-07 56.8 4.0 23 111-133 3-25 (301)
351 3t1o_A Gliding protein MGLA; G 95.3 0.0097 3.3E-07 52.5 3.5 24 111-134 15-38 (198)
352 3crm_A TRNA delta(2)-isopenten 95.3 0.011 3.7E-07 57.8 4.1 35 111-153 6-40 (323)
353 3pih_A Uvrabc system protein A 95.3 0.0032 1.1E-07 70.0 0.3 34 228-261 459-494 (916)
354 3clv_A RAB5 protein, putative; 95.3 0.01 3.5E-07 52.5 3.6 23 111-133 8-30 (208)
355 4dsu_A GTPase KRAS, isoform 2B 95.3 0.01 3.5E-07 52.0 3.6 23 112-134 6-28 (189)
356 3q72_A GTP-binding protein RAD 95.3 0.0061 2.1E-07 52.3 2.0 22 112-133 4-25 (166)
357 2gks_A Bifunctional SAT/APS ki 95.3 0.01 3.5E-07 62.3 4.0 39 109-150 371-409 (546)
358 3q85_A GTP-binding protein REM 95.3 0.0089 3E-07 51.4 3.0 22 112-133 4-25 (169)
359 3bc1_A RAS-related protein RAB 95.2 0.011 3.7E-07 52.0 3.5 23 111-133 12-34 (195)
360 3ez2_A Plasmid partition prote 95.2 0.012 4E-07 59.2 4.2 45 108-156 106-157 (398)
361 1svi_A GTP-binding protein YSX 95.2 0.01 3.4E-07 52.6 3.3 25 109-133 22-46 (195)
362 1r8s_A ADP-ribosylation factor 95.2 0.011 3.8E-07 50.5 3.5 22 112-133 2-23 (164)
363 2oil_A CATX-8, RAS-related pro 95.2 0.011 3.7E-07 52.4 3.5 23 111-133 26-48 (193)
364 3b9p_A CG5977-PA, isoform A; A 95.2 0.017 5.9E-07 55.1 5.2 27 108-134 52-78 (297)
365 1z0f_A RAB14, member RAS oncog 95.2 0.011 3.8E-07 51.2 3.5 23 111-133 16-38 (179)
366 1mky_A Probable GTP-binding pr 95.2 0.0087 3E-07 61.1 3.2 24 111-134 181-204 (439)
367 1upt_A ARL1, ADP-ribosylation 95.2 0.011 3.9E-07 50.8 3.5 25 109-133 6-30 (171)
368 2a9k_A RAS-related protein RAL 95.2 0.012 4E-07 51.4 3.5 23 111-133 19-41 (187)
369 3pqc_A Probable GTP-binding pr 95.2 0.011 3.7E-07 52.1 3.3 25 109-133 22-46 (195)
370 2qz4_A Paraplegin; AAA+, SPG7, 95.2 0.024 8.2E-07 52.8 5.9 26 109-134 38-63 (262)
371 2hxs_A RAB-26, RAS-related pro 95.2 0.011 3.9E-07 51.2 3.4 23 111-133 7-29 (178)
372 2i1q_A DNA repair and recombin 95.2 0.012 4E-07 57.3 3.8 26 108-133 96-121 (322)
373 2y8e_A RAB-protein 6, GH09086P 95.2 0.011 3.8E-07 51.2 3.3 23 111-133 15-37 (179)
374 3tw8_B RAS-related protein RAB 95.1 0.008 2.7E-07 52.2 2.3 23 111-133 10-32 (181)
375 3con_A GTPase NRAS; structural 95.1 0.012 4.1E-07 51.9 3.5 23 111-133 22-44 (190)
376 3h4m_A Proteasome-activating n 95.1 0.019 6.6E-07 54.4 5.1 27 108-134 49-75 (285)
377 2g6b_A RAS-related protein RAB 95.1 0.012 4.3E-07 51.0 3.5 23 111-133 11-33 (180)
378 1m2o_B GTP-binding protein SAR 95.1 0.011 3.9E-07 52.5 3.3 25 109-133 22-46 (190)
379 2dhr_A FTSH; AAA+ protein, hex 95.1 0.018 6.3E-07 59.7 5.3 22 113-134 67-88 (499)
380 1ypw_A Transitional endoplasmi 95.1 0.014 4.7E-07 64.3 4.5 27 108-134 236-262 (806)
381 2efe_B Small GTP-binding prote 95.1 0.013 4.6E-07 50.9 3.5 23 111-133 13-35 (181)
382 1nrj_B SR-beta, signal recogni 95.1 0.015 5.3E-07 52.5 4.1 25 109-133 11-35 (218)
383 1m8p_A Sulfate adenylyltransfe 95.0 0.012 4.2E-07 62.1 3.8 40 108-150 394-434 (573)
384 3ez9_A Para; DNA binding, wing 95.0 0.01 3.5E-07 59.8 3.1 45 108-156 109-160 (403)
385 2bme_A RAB4A, RAS-related prot 95.0 0.012 4.3E-07 51.4 3.3 23 111-133 11-33 (186)
386 2cxx_A Probable GTP-binding pr 95.0 0.01 3.4E-07 52.2 2.6 22 112-133 3-24 (190)
387 1x6v_B Bifunctional 3'-phospho 95.0 0.015 5E-07 62.0 4.3 39 109-150 51-89 (630)
388 3kkq_A RAS-related protein M-R 95.0 0.014 4.7E-07 51.0 3.5 23 111-133 19-41 (183)
389 3io5_A Recombination and repai 95.0 0.019 6.5E-07 55.9 4.7 40 108-150 27-67 (333)
390 2q6t_A DNAB replication FORK h 95.0 0.024 8.1E-07 57.9 5.7 41 107-150 197-238 (444)
391 1g8f_A Sulfate adenylyltransfe 95.0 0.013 4.6E-07 60.8 3.8 41 108-151 393-435 (511)
392 1m7b_A RND3/RHOE small GTP-bin 95.0 0.013 4.5E-07 51.5 3.3 23 111-133 8-30 (184)
393 3ihw_A Centg3; RAS, centaurin, 95.0 0.014 5E-07 51.5 3.5 23 111-133 21-43 (184)
394 3iby_A Ferrous iron transport 95.0 0.012 4E-07 55.6 3.1 23 111-133 2-24 (256)
395 2gf9_A RAS-related protein RAB 95.0 0.014 4.9E-07 51.5 3.5 23 112-134 24-46 (189)
396 3exa_A TRNA delta(2)-isopenten 94.9 0.022 7.4E-07 55.4 4.9 24 110-133 3-26 (322)
397 3tkl_A RAS-related protein RAB 94.9 0.015 5E-07 51.4 3.5 22 112-133 18-39 (196)
398 3lxw_A GTPase IMAP family memb 94.9 0.013 4.3E-07 55.0 3.2 24 110-133 21-44 (247)
399 1fzq_A ADP-ribosylation factor 94.9 0.0087 3E-07 52.7 2.0 24 109-132 15-38 (181)
400 2fg5_A RAB-22B, RAS-related pr 94.9 0.014 4.8E-07 51.8 3.3 23 111-133 24-46 (192)
401 1mh1_A RAC1; GTP-binding, GTPa 94.9 0.015 5.2E-07 50.7 3.5 23 111-133 6-28 (186)
402 3sr0_A Adenylate kinase; phosp 94.9 0.016 5.5E-07 52.9 3.8 23 112-134 2-24 (206)
403 3syl_A Protein CBBX; photosynt 94.9 0.024 8.3E-07 54.3 5.3 30 108-137 65-94 (309)
404 1vg8_A RAS-related protein RAB 94.9 0.015 5.1E-07 51.9 3.6 25 110-134 8-32 (207)
405 3iqw_A Tail-anchored protein t 94.9 0.025 8.6E-07 55.6 5.4 41 110-153 16-56 (334)
406 1ihu_A Arsenical pump-driving 94.9 0.026 9E-07 59.7 5.9 44 109-156 7-50 (589)
407 3dz8_A RAS-related protein RAB 94.9 0.014 4.9E-07 51.6 3.3 24 111-134 24-47 (191)
408 2bov_A RAla, RAS-related prote 94.9 0.015 5.2E-07 51.7 3.5 23 111-133 15-37 (206)
409 2qag_A Septin-2, protein NEDD5 94.9 0.0083 2.8E-07 59.7 1.8 44 86-133 17-60 (361)
410 2qmh_A HPR kinase/phosphorylas 94.9 0.021 7.1E-07 51.8 4.3 25 109-133 33-57 (205)
411 1z06_A RAS-related protein RAB 94.9 0.016 5.5E-07 51.1 3.6 23 111-133 21-43 (189)
412 3b1v_A Ferrous iron uptake tra 94.9 0.013 4.4E-07 55.9 3.0 23 111-133 4-26 (272)
413 3t15_A Ribulose bisphosphate c 94.8 0.027 9.1E-07 54.2 5.3 33 111-149 37-69 (293)
414 2gf0_A GTP-binding protein DI- 94.8 0.015 5.2E-07 51.4 3.3 24 110-133 8-31 (199)
415 2a5j_A RAS-related protein RAB 94.8 0.017 5.7E-07 51.2 3.5 22 112-133 23-44 (191)
416 3oes_A GTPase rhebl1; small GT 94.8 0.015 5.2E-07 51.9 3.3 26 109-134 23-48 (201)
417 3t5g_A GTP-binding protein RHE 94.8 0.016 5.4E-07 50.6 3.3 23 111-133 7-29 (181)
418 3bwd_D RAC-like GTP-binding pr 94.8 0.018 6.1E-07 50.1 3.5 25 109-133 7-31 (182)
419 1zd9_A ADP-ribosylation factor 94.7 0.018 6E-07 50.9 3.5 24 110-133 22-45 (188)
420 3pg5_A Uncharacterized protein 94.7 0.015 5.2E-07 57.7 3.4 41 112-155 3-44 (361)
421 1x3s_A RAS-related protein RAB 94.7 0.018 6.1E-07 50.7 3.5 23 111-133 16-38 (195)
422 2woo_A ATPase GET3; tail-ancho 94.7 0.033 1.1E-06 54.5 5.6 41 111-155 20-60 (329)
423 3io3_A DEHA2D07832P; chaperone 94.7 0.035 1.2E-06 54.9 5.8 40 110-152 18-59 (348)
424 2atv_A RERG, RAS-like estrogen 94.7 0.019 6.5E-07 51.0 3.6 25 109-133 27-51 (196)
425 1zbd_A Rabphilin-3A; G protein 94.7 0.017 5.7E-07 51.6 3.2 23 111-133 9-31 (203)
426 3reg_A RHO-like small GTPase; 94.7 0.019 6.4E-07 50.9 3.5 25 110-134 23-47 (194)
427 2ew1_A RAS-related protein RAB 94.7 0.017 5.9E-07 52.0 3.3 23 111-133 27-49 (201)
428 1moz_A ARL1, ADP-ribosylation 94.6 0.0082 2.8E-07 52.5 1.0 24 109-132 17-40 (183)
429 1f6b_A SAR1; gtpases, N-termin 94.6 0.0099 3.4E-07 53.3 1.6 24 109-132 24-47 (198)
430 2p5s_A RAS and EF-hand domain 94.6 0.019 6.6E-07 51.2 3.5 25 109-133 27-51 (199)
431 1jwy_B Dynamin A GTPase domain 94.6 0.016 5.4E-07 55.9 3.1 26 109-134 23-48 (315)
432 3llm_A ATP-dependent RNA helic 94.6 0.016 5.6E-07 53.5 3.1 26 108-133 74-99 (235)
433 1njg_A DNA polymerase III subu 94.6 0.033 1.1E-06 50.4 5.1 27 110-136 45-71 (250)
434 1ksh_A ARF-like protein 2; sma 94.6 0.015 5.2E-07 51.0 2.7 25 109-133 17-41 (186)
435 2bcg_Y Protein YP2, GTP-bindin 94.6 0.018 6.3E-07 51.5 3.3 24 111-134 9-32 (206)
436 2cjw_A GTP-binding protein GEM 94.6 0.02 6.9E-07 51.0 3.5 23 111-133 7-29 (192)
437 1ofh_A ATP-dependent HSL prote 94.6 0.033 1.1E-06 53.2 5.2 26 109-134 49-74 (310)
438 3c5c_A RAS-like protein 12; GD 94.5 0.021 7.3E-07 50.4 3.6 23 111-133 22-44 (187)
439 1zj6_A ADP-ribosylation factor 94.5 0.017 6E-07 50.8 3.0 24 109-132 15-38 (187)
440 2ce7_A Cell division protein F 94.5 0.057 1.9E-06 55.6 7.1 24 111-134 50-73 (476)
441 2iwr_A Centaurin gamma 1; ANK 94.5 0.016 5.6E-07 50.3 2.6 23 111-133 8-30 (178)
442 3v9p_A DTMP kinase, thymidylat 94.5 0.023 7.7E-07 52.7 3.7 28 108-135 23-50 (227)
443 3cph_A RAS-related protein SEC 94.5 0.021 7.3E-07 51.1 3.5 25 109-133 19-43 (213)
444 2h92_A Cytidylate kinase; ross 94.5 0.02 6.9E-07 52.0 3.3 25 110-134 3-27 (219)
445 2h17_A ADP-ribosylation factor 94.5 0.016 5.4E-07 50.9 2.5 25 109-133 20-44 (181)
446 1ojl_A Transcriptional regulat 94.5 0.042 1.5E-06 53.1 5.8 40 108-150 23-62 (304)
447 2o52_A RAS-related protein RAB 94.5 0.017 5.8E-07 51.7 2.8 23 111-133 26-48 (200)
448 2fv8_A H6, RHO-related GTP-bin 94.5 0.021 7.1E-07 51.4 3.3 23 111-133 26-48 (207)
449 1gwn_A RHO-related GTP-binding 94.5 0.02 7E-07 51.6 3.3 24 110-133 28-51 (205)
450 2e87_A Hypothetical protein PH 94.5 0.016 5.4E-07 57.4 2.7 25 109-133 166-190 (357)
451 2axn_A 6-phosphofructo-2-kinas 94.4 0.028 9.6E-07 58.7 4.6 28 109-136 34-61 (520)
452 1h65_A Chloroplast outer envel 94.4 0.038 1.3E-06 52.2 5.2 24 110-133 39-62 (270)
453 3zvl_A Bifunctional polynucleo 94.4 0.021 7.1E-07 57.9 3.5 25 109-133 257-281 (416)
454 1jal_A YCHF protein; nucleotid 94.4 0.024 8.4E-07 56.3 3.9 24 110-133 2-25 (363)
455 3t5d_A Septin-7; GTP-binding p 94.4 0.015 5E-07 55.3 2.2 22 112-133 10-31 (274)
456 3cbq_A GTP-binding protein REM 94.4 0.013 4.4E-07 52.4 1.7 23 111-133 24-46 (195)
457 2il1_A RAB12; G-protein, GDP, 94.4 0.016 5.3E-07 51.5 2.2 22 112-133 28-49 (192)
458 3llu_A RAS-related GTP-binding 94.4 0.019 6.6E-07 51.1 2.8 25 109-133 19-43 (196)
459 3uk6_A RUVB-like 2; hexameric 94.3 0.06 2.1E-06 52.9 6.7 28 108-135 68-95 (368)
460 2xtp_A GTPase IMAP family memb 94.3 0.02 6.8E-07 53.6 3.0 25 109-133 21-45 (260)
461 1wf3_A GTP-binding protein; GT 94.3 0.021 7.2E-07 55.2 3.2 23 111-133 8-30 (301)
462 3foz_A TRNA delta(2)-isopenten 94.3 0.035 1.2E-06 53.8 4.7 26 109-134 9-34 (316)
463 4dhe_A Probable GTP-binding pr 94.3 0.012 4E-07 53.5 1.2 25 109-133 28-52 (223)
464 2gco_A H9, RHO-related GTP-bin 94.3 0.024 8.1E-07 50.7 3.3 23 111-133 26-48 (201)
465 3a1s_A Iron(II) transport prot 94.3 0.022 7.7E-07 53.7 3.2 23 111-133 6-28 (258)
466 2f7s_A C25KG, RAS-related prot 94.3 0.022 7.4E-07 51.5 3.0 23 111-133 26-48 (217)
467 1xx6_A Thymidine kinase; NESG, 94.3 0.043 1.5E-06 49.4 5.0 38 108-148 6-43 (191)
468 2fu5_C RAS-related protein RAB 94.3 0.015 5.2E-07 50.8 1.9 23 111-133 9-31 (183)
469 2h57_A ADP-ribosylation factor 94.3 0.014 4.7E-07 51.6 1.6 26 109-134 20-45 (190)
470 4i1u_A Dephospho-COA kinase; s 94.3 0.028 9.7E-07 51.4 3.7 41 111-160 10-50 (210)
471 2q3h_A RAS homolog gene family 94.2 0.022 7.6E-07 50.7 3.0 26 109-134 19-44 (201)
472 3bgw_A DNAB-like replicative h 94.2 0.037 1.3E-06 56.6 5.0 45 107-154 194-238 (444)
473 1sxj_D Activator 1 41 kDa subu 94.2 0.018 6.1E-07 56.2 2.5 25 111-135 59-83 (353)
474 2fh5_B SR-beta, signal recogni 94.2 0.028 9.5E-07 50.6 3.7 25 109-133 6-30 (214)
475 4bas_A ADP-ribosylation factor 94.2 0.018 6.2E-07 51.0 2.3 25 109-133 16-40 (199)
476 2atx_A Small GTP binding prote 94.2 0.026 8.8E-07 49.9 3.3 22 112-133 20-41 (194)
477 3iev_A GTP-binding protein ERA 94.2 0.023 7.9E-07 55.0 3.2 23 111-133 11-33 (308)
478 2aka_B Dynamin-1; fusion prote 94.2 0.024 8.1E-07 54.1 3.2 25 109-133 25-49 (299)
479 2qu8_A Putative nucleolar GTP- 94.2 0.021 7.1E-07 52.3 2.6 25 109-133 28-52 (228)
480 2ocp_A DGK, deoxyguanosine kin 94.2 0.024 8.3E-07 52.5 3.1 25 110-134 2-26 (241)
481 3tmk_A Thymidylate kinase; pho 94.1 0.035 1.2E-06 51.0 4.2 27 109-135 4-30 (216)
482 2j1l_A RHO-related GTP-binding 94.1 0.022 7.7E-07 51.5 2.8 23 111-133 35-57 (214)
483 2woj_A ATPase GET3; tail-ancho 94.1 0.046 1.6E-06 54.1 5.3 42 111-156 19-62 (354)
484 1e9r_A Conjugal transfer prote 94.1 0.034 1.2E-06 56.4 4.4 37 110-149 53-89 (437)
485 3hjn_A DTMP kinase, thymidylat 94.1 0.048 1.6E-06 49.2 4.9 33 112-147 2-34 (197)
486 1c9k_A COBU, adenosylcobinamid 94.1 0.029 9.9E-07 50.1 3.3 32 113-151 2-33 (180)
487 2z4s_A Chromosomal replication 94.0 0.05 1.7E-06 55.5 5.5 27 110-136 130-156 (440)
488 2hup_A RAS-related protein RAB 94.0 0.029 9.9E-07 50.2 3.3 23 111-133 30-52 (201)
489 3i8s_A Ferrous iron transport 94.0 0.025 8.6E-07 53.8 3.0 23 111-133 4-26 (274)
490 2vhj_A Ntpase P4, P4; non- hyd 94.0 0.018 6.1E-07 56.2 1.9 36 108-149 121-156 (331)
491 4hlc_A DTMP kinase, thymidylat 94.0 0.05 1.7E-06 49.5 4.8 26 110-135 2-27 (205)
492 3gmt_A Adenylate kinase; ssgci 94.0 0.036 1.2E-06 51.4 3.8 25 110-134 8-32 (230)
493 4gzl_A RAS-related C3 botulinu 93.9 0.031 1E-06 50.2 3.3 25 109-133 29-53 (204)
494 3eie_A Vacuolar protein sortin 93.9 0.051 1.7E-06 52.8 5.1 27 108-134 49-75 (322)
495 2dby_A GTP-binding protein; GD 93.9 0.031 1E-06 55.7 3.4 23 112-134 3-25 (368)
496 3cpj_B GTP-binding protein YPT 93.9 0.035 1.2E-06 50.5 3.6 23 111-133 14-36 (223)
497 2b6h_A ADP-ribosylation factor 93.8 0.022 7.4E-07 50.7 2.0 24 109-132 28-51 (192)
498 1d2n_A N-ethylmaleimide-sensit 93.8 0.055 1.9E-06 51.0 4.9 27 108-134 62-88 (272)
499 3def_A T7I23.11 protein; chlor 93.8 0.058 2E-06 50.7 5.0 24 110-133 36-59 (262)
500 3q3j_B RHO-related GTP-binding 93.8 0.037 1.3E-06 50.2 3.5 24 110-133 27-50 (214)
No 1
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-49 Score=410.69 Aligned_cols=400 Identities=27% Similarity=0.473 Sum_probs=278.8
Q ss_pred CCCcceEEEeCCCCeEEEEEe-CceEEEEEEeeEEEEeceeccCCCeEEecCCceEEEEeccCcEEEEEeeccceeee--
Q psy2946 4 LGPDDQTFELKQDQELRFEVE-NAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSITMKNARKNMTYV-- 80 (455)
Q Consensus 4 ~~~~~~~~~l~~~~e~r~e~~-~~~~~i~l~~G~aei~G~el~~~~~~~~~~~~~~~i~t~~g~~i~i~g~~~~~~y~-- 80 (455)
..++.|+++|++++|||||++ +++++|+|++|.+||||++|..+.+|+| .+.+.++|+|++|++++++ ..+.+|.
T Consensus 34 ~~~~~~~~~l~~~~e~R~ev~~~~~~~i~l~~g~~~i~G~~L~~~~~~t~-g~~~~~i~~~~~~~l~i~~-~~~~e~~~~ 111 (460)
T 2npi_A 34 GDNEWHKLVIPKGSDWQIDLKAEGKLIVKVNSGIVEIFGTELAVDDEYTF-QNWKFPIYAVEETELLWKC-PDLTTNTIT 111 (460)
T ss_dssp CCSSCEEEECCTTEECCEECCTTCEEEEEEEESCEEETTEECCBTSEEEE-ESCEECCEESSSCEEEEEC-TTCCSSSCC
T ss_pred CCCCcEEEEeCCCcEEEEEECCCCeEEEEEeeeEEEEEEEEecCCCeEEE-cceEEEEEEEcceEEEEec-CCccceeec
Confidence 345679999999999999999 9999999999999999999999999999 6678899999999999998 6777888
Q ss_pred -ecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCC-ccEEEecCCCCCcCCC
Q psy2946 81 -SKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNR-KPIFVDLDVGQGHVSV 158 (455)
Q Consensus 81 -~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~-~~~~vDlDpgqG~i~~ 158 (455)
+.+++|+++.|+++.|++.+..+ .+|++++|+||||||||||+|+|+|++.++ ++ +|+++|.|+.++-..+
T Consensus 112 ~~~~~~mi~~~nl~~~y~~vsl~i----~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~~~~~i~~v 184 (460)
T 2npi_A 112 VKPNHTMKYIYNLHFMLEKIRMSN----FEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLDPQQPIFTV 184 (460)
T ss_dssp CEECCTHHHHHHHHHHHHHHHHHS----SSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECCTTSCSSSC
T ss_pred CCCCcchhhhhhhhehhhcCceEe----CCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCCccCCeeee
Confidence 77899999999999998644333 699999999999999999999999999888 77 7888998877766666
Q ss_pred CCeeeccccccccccC-CCCc-----------ccCceEEEecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEE
Q psy2946 159 PGTIGALVIERPATIE-DGFS-----------QLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMI 226 (455)
Q Consensus 159 ~G~~~~~~~~~~~~~~-~~~~-----------~q~p~~~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~i 226 (455)
++...+.......... ..|. ...++..++|.....++-.++.-..++++-....++..+...+.+|++
T Consensus 185 pq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLl 264 (460)
T 2npi_A 185 PGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCI 264 (460)
T ss_dssp SSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEE
T ss_pred ccchhhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEE
Confidence 6664321111100000 0000 011223334433332222333222222222222112222223344455
Q ss_pred EecCCCc-cCCcHHHHHHHHHHcCCCEEEEecCch--hhHHHHhhCCCc---eEEEEeCCCCCcccCCHHHHHHHHHHHH
Q psy2946 227 INTCGWI-KGDGFKCLMACAKSLRVDNILVLDQER--LYNELIRELPKS---YDVVLLPKSGGVVDRSRQFRAEARDKRI 300 (455)
Q Consensus 227 int~g~~-~s~G~~q~~~ia~al~~~~~vll~DEp--l~~~l~~~l~~~---~~v~~l~~s~g~~~r~~~~~~~~r~~~i 300 (455)
+|.|+|. ++..++....+++.+..+..++.-|+. +.+++...+.+. ++|+.+++.++++.+++...+..+...+
T Consensus 265 LDEpPts~LD~~~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv~g~~~~~~~~~~~~i 344 (460)
T 2npi_A 265 VDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDDVYKRSLQRTSI 344 (460)
T ss_dssp EECCCGGGSCSSCHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCCCCCHHHHHHHHHHHH
T ss_pred EeCCcccccChhHHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEEECCHHHHhhhhHHHH
Confidence 5553222 122233334444444444333333333 222122111111 1277887677777777777777788899
Q ss_pred HHhccCCCCCCCCceeEEEEeccEEEEEecCCCCCCccCcCCCccccceeEEEEe-CCCccccccEEEEecCCC---cch
Q psy2946 301 KEYFYGSRLKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLV-QPGPSLLHHLLALSFATT---ESE 376 (455)
Q Consensus 301 ~~YF~g~~~~~l~p~~~~v~~~~~~~~~~~~~~~p~~~lp~g~~~~~~~~~~~~~-~~~~~l~~~i~Av~~~~~---~~~ 376 (455)
++||+|.....+.|+.++++|+++.+|+++.. |... .+ ...+.+. .++.+|.|+|+|+++++. .++
T Consensus 345 ~~~f~g~~~~~l~p~~~~v~~~~~~~~~~~~~--~~~~--~~------~~~~~p~~~~~~~l~~~ilav~~~~~~~~~~~ 414 (460)
T 2npi_A 345 REYFYGSLDTALSPYAIGVDYEDLTIWKPSNV--FDNE--VG------RVELFPVTITPSNLQHAIIAITFAERRADQAT 414 (460)
T ss_dssp HHHHHCCTTTCBCCEEEEEESTTCCEEEECCS--TTTS--SC------CSCEEECCCCHHHHTTEEEEEESSCTTCCHHH
T ss_pred HHHhCCCCCCCcCCccEEEecCCeEEEEecCC--CCCC--CC------ceeeecCCCCChhhhCcEEEEEecCcCCCccc
Confidence 99999976568999999999999999999642 1100 01 0122233 566789999999999964 678
Q ss_pred hccCCeeEEEEEeEeecCCCEEEEEecCCCCCCCceEEeecccchh
Q psy2946 377 ILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLILTDIQYMD 422 (455)
Q Consensus 377 ~~~~~~~Gf~~V~~vd~~~~~i~vltP~~~~lp~~~lv~g~~~~~~ 422 (455)
+..++++||++|.+||.+++++++|+|.|++||++.|++|+++|+|
T Consensus 415 v~~~~v~Gf~~v~~Vd~~~~~~~vl~p~~~~lp~~~l~~~~~~~~~ 460 (460)
T 2npi_A 415 VIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLE 460 (460)
T ss_dssp HTTSCEEEEEEEEEEETTTTEEEEEESSSSCCCCSCEEEEEEECCC
T ss_pred cccccCccEEEEEEEEcCCCEEEEEcCCCCCCCCCceeeeeeEecC
Confidence 9999999999999999999999999999999999999999999985
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.85 E-value=1.3e-23 Score=210.28 Aligned_cols=130 Identities=20% Similarity=0.153 Sum_probs=101.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccc--cccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV--IERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~--~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|...... ...+....++|+||++ .
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---------------~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~--~ 90 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPD---------------SGEISLSGKTIFSKNTNLPVRERRLGYLVQEG--V 90 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSCCS---------------EEEEEETTEEEESSSCBCCGGGSCCEEECTTC--C
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCCCC---------------CcEEEECCEECcccccccchhhCCEEEEeCCC--c
Confidence 799999999999999999999999997766 99999999875321 1123345689999999 8
Q ss_pred EecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecC
Q psy2946 186 NYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~D 258 (455)
+|+++|+.+|+.+.... ..+.++++.+.++..... |.....+|+||+||++|||||..+|.++|+|
T Consensus 91 l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-------~r~~~~LSGGq~QRValArAL~~~P~lLLLD 163 (359)
T 3fvq_A 91 LFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELA-------GRYPHELSGGQQQRAALARALAPDPELILLD 163 (359)
T ss_dssp CCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGT-------TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHh-------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999999885431 233445555665543322 2344566779999999999999999999999
Q ss_pred chh
Q psy2946 259 ERL 261 (455)
Q Consensus 259 Epl 261 (455)
||+
T Consensus 164 EPt 166 (359)
T 3fvq_A 164 EPF 166 (359)
T ss_dssp STT
T ss_pred CCc
Confidence 996
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.84 E-value=3.3e-23 Score=208.80 Aligned_cols=128 Identities=20% Similarity=0.193 Sum_probs=101.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|....... +....++|+||++ .+|
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---------------~G~I~i~G~~~~~~~--~~~r~ig~VfQ~~--~l~ 87 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLETIT---------------SGDLFIGEKRMNDTP--PAERGVGMVFQSY--ALY 87 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCS---------------EEEEEETTEECTTCC--GGGSCEEEECTTC--CCC
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCCCC---------------CeEEEECCEECCCCC--HHHCCEEEEecCC--cCC
Confidence 799999999999999999999999997666 999999998754322 2335689999999 899
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+++|+.+|+.+..... .+.++++.+.++..... |.....+|+||+||++|||||..+|.++|+|||
T Consensus 88 p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-------~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEP 160 (381)
T 3rlf_A 88 PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL-------DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160 (381)
T ss_dssp TTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGT-------TCCGGGSCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-------cCChhHCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 9999999999976532 23344555555543221 334456677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 161 t 161 (381)
T 3rlf_A 161 L 161 (381)
T ss_dssp T
T ss_pred C
Confidence 6
No 4
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.84 E-value=5.7e-23 Score=205.64 Aligned_cols=128 Identities=18% Similarity=0.194 Sum_probs=100.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|...... .+....++|++|++ .+|
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---------------~G~I~i~g~~i~~~--~~~~r~ig~v~Q~~--~l~ 99 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLERPT---------------KGDVWIGGKRVTDL--PPQKRNVGLVFQNY--ALF 99 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCCS---------------EEEEEETTEECTTC--CGGGSSEEEECGGG--CCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCCC---------------ccEEEECCEECCcC--ChhhCcEEEEecCc--ccC
Confidence 689999999999999999999999997666 89999999865432 22345689999998 789
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+++|+.+|+.+..... .+.++++.+.++..... |.....+|+||+||++|||||..+|.++|+|||
T Consensus 100 ~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-------~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 172 (355)
T 1z47_A 100 QHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYA-------NRFPHELSGGQQQRVALARALAPRPQVLLFDEP 172 (355)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGT-------TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999999876431 22344455555443221 233445677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 173 ~ 173 (355)
T 1z47_A 173 F 173 (355)
T ss_dssp T
T ss_pred c
Confidence 6
No 5
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.83 E-value=5.2e-23 Score=194.05 Aligned_cols=130 Identities=22% Similarity=0.193 Sum_probs=98.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc---ccc-cCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER---PAT-IEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~---~~~-~~~~~~~q~p~ 183 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|......... ..+ ..++|++|++
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~- 91 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDAPT---------------EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFH- 91 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSCCS---------------EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCc-
Confidence 689999999999999999999999997666 89999999764322111 111 4578999998
Q ss_pred EEEecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 184 VYNYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.++..+|+.+|+.+.... ....+..+.+.++.... .+.+...+|+||+||++|||||..+|.++|
T Consensus 92 -~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~LSgGq~qrv~laral~~~p~lll 163 (224)
T 2pcj_A 92 -YLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDK-------LSRKPYELSGGEQQRVAIARALANEPILLF 163 (224)
T ss_dssp -CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTC-------TTCCGGGSCHHHHHHHHHHHHTTTCCSEEE
T ss_pred -ccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchh-------hhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 788889999999886532 12233444555544322 133445667799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 164 LDEPt 168 (224)
T 2pcj_A 164 ADEPT 168 (224)
T ss_dssp EESTT
T ss_pred EeCCC
Confidence 99997
No 6
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.83 E-value=9.5e-23 Score=203.80 Aligned_cols=128 Identities=17% Similarity=0.224 Sum_probs=100.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|...... .+.+..++|++|++ .+|
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---------------~G~I~~~g~~i~~~--~~~~r~ig~v~Q~~--~l~ 84 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFHVPD---------------SGRILLDGKDVTDL--SPEKHDIAFVYQNY--SLF 84 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSSCCS---------------EEEEEETTEECTTS--CHHHHTCEEECTTC--CCC
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCCCCC---------------CcEEEECCEECCCC--chhhCcEEEEecCc--ccC
Confidence 699999999999999999999999997666 89999999865331 22345689999998 789
Q ss_pred cCCCcccCHHHHHHHHH----HHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVE----RLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~----~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+++|+.+|+.+...... +..+++.+.++..... |.....+|+||+||++|||||..+|.++|+|||+
T Consensus 85 ~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~-------~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~ 155 (348)
T 3d31_A 85 PHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL-------DRNPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (348)
T ss_dssp TTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTT-------TSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHh-------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 99999999998764321 2344455555543321 2234456779999999999999999999999996
No 7
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.83 E-value=5.1e-22 Score=198.89 Aligned_cols=130 Identities=21% Similarity=0.123 Sum_probs=102.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc---ccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER---PATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~---~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|......... ..+..++|+||++
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---------------~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~-- 114 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLERPT---------------EGSVLVDGQELTTLSESELTKARRQIGMIFQHF-- 114 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCS---------------EEEEEETTEECSSCCHHHHHHHHTTEEEECSSC--
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCCCCC---------------ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCC--
Confidence 799999999999999999999999997766 99999999876543222 1245689999999
Q ss_pred EEecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 185 YNYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
.++..+|+.+|+.+.... ..+.+..+.+.++..... +.....+|+||+||++|||||+.+|+++|+
T Consensus 115 ~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~-------~~~~~~LSGGqkQRVaIArAL~~~P~lLLl 187 (366)
T 3tui_C 115 NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-------DSYPSNLSGGQKQRVAIARALASNPKVLLC 187 (366)
T ss_dssp CCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT-------TCCTTTSCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHh-------cCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 789999999999987643 223345555555543321 334456777999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 188 DEPT 191 (366)
T 3tui_C 188 DQAT 191 (366)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9996
No 8
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.83 E-value=2.3e-22 Score=201.86 Aligned_cols=128 Identities=21% Similarity=0.228 Sum_probs=100.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|....... +....++|++|++ .+|
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---------------~G~I~i~g~~i~~~~--~~~r~ig~v~Q~~--~l~ 87 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYKPT---------------SGKIYFDEKDVTELP--PKDRNVGLVFQNW--ALY 87 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCS---------------EEEEEETTEECTTSC--GGGTTEEEECTTC--CCC
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCCC---------------ceEEEECCEECCcCC--HhHCcEEEEecCc--ccC
Confidence 689999999999999999999999997666 899999998654321 2235689999998 789
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+++|+.+|+.+..... .+.++++.+.++..... +.....+|+||+||++|||||..+|.++|+|||
T Consensus 88 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-------~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 160 (362)
T 2it1_A 88 PHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLL-------NRYPWQLSGGQQQRVAIARALVKEPEVLLLDEP 160 (362)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-------TCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESG
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHh-------hCChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 9999999999875431 22344455555543221 233455677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 161 ~ 161 (362)
T 2it1_A 161 L 161 (362)
T ss_dssp G
T ss_pred c
Confidence 6
No 9
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.82 E-value=9.7e-23 Score=196.52 Aligned_cols=129 Identities=19% Similarity=0.187 Sum_probs=97.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc---cccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE---RPATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~---~~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|.... ... ...+..++|++|++
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---------------~G~I~~~g~~i~-~~~~~~~~~~~~i~~v~Q~~-- 109 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLEDFD---------------EGEIIIDGINLK-AKDTNLNKVREEVGMVFQRF-- 109 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCS---------------EEEEEETTEESS-STTCCHHHHHHHEEEECSSC--
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---------------CcEEEECCEECC-CccccHHHHhCcEEEEeCCC--
Confidence 799999999999999999999999997666 899999997542 111 11234578999998
Q ss_pred EEecCCCcccCHHHHH-HH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 185 YNYGHLTPNANLELYQ-HC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~-~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.++..+|+.+|+.++. .. ..+.++.+.+.++.... .|.+...+|+||+||++|||||..+|+++|
T Consensus 110 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------~~~~~~~LSgGqkQRv~lAraL~~~p~lll 182 (263)
T 2olj_A 110 NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDK-------AHAYPDSLSGGQAQRVAIARALAMEPKIML 182 (263)
T ss_dssp CCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGG-------TTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred cCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-------hcCChhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 7888999999998853 11 12233445555544322 133445667799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 183 LDEPt 187 (263)
T 2olj_A 183 FDEPT 187 (263)
T ss_dssp EESTT
T ss_pred EeCCc
Confidence 99997
No 10
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.82 E-value=7.1e-22 Score=184.77 Aligned_cols=152 Identities=14% Similarity=0.148 Sum_probs=109.7
Q ss_pred ccCcEEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCC
Q psy2946 63 WHGCSITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNR 142 (455)
Q Consensus 63 ~~g~~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~ 142 (455)
.+|+.|++++ ..+.|. . +++. |+++.+ .+|++++|+||||||||||+|+|+|+..++
T Consensus 6 ~~~~~l~~~~--ls~~y~--~-~il~--~vsl~i-----------~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~----- 62 (214)
T 1sgw_A 6 HHGSKLEIRD--LSVGYD--K-PVLE--RITMTI-----------EKGNVVNFHGPNGIGKTTLLKTISTYLKPL----- 62 (214)
T ss_dssp ---CEEEEEE--EEEESS--S-EEEE--EEEEEE-----------ETTCCEEEECCTTSSHHHHHHHHTTSSCCS-----
T ss_pred CCCceEEEEE--EEEEeC--C-eEEe--eeEEEE-----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC-----
Confidence 3678888886 666662 2 3332 222211 589999999999999999999999997666
Q ss_pred ccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHH-----HHHHHHHHHhhccC
Q psy2946 143 KPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV-----ERLWKSVDERMNKD 217 (455)
Q Consensus 143 ~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~-----~~l~~~~~~~~~~~ 217 (455)
+|+|.++|.... ..+..++|++|++ .+|..+|+.+|+.++.... ...++.+.+.++..
T Consensus 63 ----------~G~I~~~g~~~~-----~~~~~i~~v~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~ 125 (214)
T 1sgw_A 63 ----------KGEIIYNGVPIT-----KVKGKIFFLPEEI--IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL 125 (214)
T ss_dssp ----------EEEEEETTEEGG-----GGGGGEEEECSSC--CCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC
T ss_pred ----------CeEEEECCEEhh-----hhcCcEEEEeCCC--cCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCC
Confidence 899999997543 2345678999998 6788889999998865321 12334445555433
Q ss_pred CCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 218 SKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 218 ~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
.. +.....+|+||+||++||+||..+|.++|+|||+.
T Consensus 126 ~~--------~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts 162 (214)
T 1sgw_A 126 DL--------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVV 162 (214)
T ss_dssp CT--------TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTT
T ss_pred cC--------CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 21 33445667799999999999999999999999973
No 11
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.82 E-value=6.5e-23 Score=198.93 Aligned_cols=131 Identities=17% Similarity=0.081 Sum_probs=97.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecc--ccccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGAL--VIERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~--~~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|..... ......+..++|++|+|...
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---------------~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~ 96 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGILKPS---------------SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQ 96 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSSCCS---------------EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCC---------------CeEEEECCEECCcccccHHHHhCcEEEEEcCcccc
Confidence 689999999999999999999999997666 9999999986521 11112345689999987323
Q ss_pred EecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecC
Q psy2946 186 NYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~D 258 (455)
++ ..|+.+|+.+.... ..+.++.+.+.++..... |.+...+|+||+||++|||||+.+|+++|+|
T Consensus 97 ~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~~~~LSgGqkQRv~iAraL~~~P~lLlLD 168 (275)
T 3gfo_A 97 LF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLK-------DKPTHCLSFGQKKRVAIAGVLVMEPKVLILD 168 (275)
T ss_dssp CC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGT-------TSBGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-------cCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 44 67999999887542 123344455555443221 2344566779999999999999999999999
Q ss_pred chh
Q psy2946 259 ERL 261 (455)
Q Consensus 259 Epl 261 (455)
||+
T Consensus 169 EPt 171 (275)
T 3gfo_A 169 EPT 171 (275)
T ss_dssp CTT
T ss_pred Ccc
Confidence 996
No 12
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.82 E-value=1.9e-22 Score=202.15 Aligned_cols=130 Identities=20% Similarity=0.168 Sum_probs=100.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc---ccccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI---ERPATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~---~~~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|....... ..+.+..++|++|++
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---------------~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~-- 91 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLDVPS---------------TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTW-- 91 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSSCCS---------------EEEEEETTEEEEETTEESSCGGGSCEEEEETTS--
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCCC---------------ceEEEECCEECcccccccCChhhCCEEEEeCCC--
Confidence 799999999999999999999999997666 999999998654310 122345689999998
Q ss_pred EEecCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEec
Q psy2946 185 YNYGHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLD 257 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~ 257 (455)
.+|+++|+.+|+.+.... ..+.++++.+.++..... |.....+|+||+||++|||||..+|.++|+
T Consensus 92 ~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-------~~~~~~LSGGq~QRvalAraL~~~P~lLLL 164 (353)
T 1oxx_K 92 ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVL-------NHFPRELSGAQQQRVALARALVKDPSLLLL 164 (353)
T ss_dssp CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGT-------TSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-------cCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 789999999999885432 123344555555543221 223445677999999999999999999999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 165 DEP~ 168 (353)
T 1oxx_K 165 DEPF 168 (353)
T ss_dssp ESTT
T ss_pred ECCc
Confidence 9996
No 13
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.82 E-value=2.3e-22 Score=202.93 Aligned_cols=130 Identities=17% Similarity=0.176 Sum_probs=100.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc----ccccccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI----ERPATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~----~~~~~~~~~~~~q~p~ 183 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|....... ..+....++|++|++
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---------------~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~- 90 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPS---------------RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSY- 90 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCCS---------------EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCC-
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCCCCC---------------ccEEEECCEECccccccccCCHhHCCEEEEeCCC-
Confidence 689999999999999999999999997666 999999998654310 112345689999998
Q ss_pred EEEecCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 184 VYNYGHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.+|+++|+.+|+.+..... .+..+.+.+.++..... +.....+|+||+||++|||||..+|.++|
T Consensus 91 -~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-------~r~~~~LSGGq~QRvalArAL~~~P~lLL 162 (372)
T 1g29_1 91 -ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELL-------NRKPRELSGGQRQRVALGRAIVRKPQVFL 162 (372)
T ss_dssp -CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGT-------TCCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred -ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-------cCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7899999999999876431 22344455555543221 22334567799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 163 LDEP~ 167 (372)
T 1g29_1 163 MDEPL 167 (372)
T ss_dssp EECTT
T ss_pred ECCCC
Confidence 99996
No 14
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.82 E-value=1.8e-22 Score=202.46 Aligned_cols=128 Identities=20% Similarity=0.196 Sum_probs=99.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|....... +....++|++|++ .+|
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---------------~G~I~i~g~~i~~~~--~~~r~ig~v~Q~~--~l~ 87 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYKPT---------------SGEIYFDDVLVNDIP--PKYREVGMVFQNY--ALY 87 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSCCS---------------EEEEEETTEECTTSC--GGGTTEEEECSSC--CCC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCCCC---------------ccEEEECCEECCCCC--hhhCcEEEEecCc--ccC
Confidence 689999999999999999999999997666 899999998654321 2235689999998 789
Q ss_pred cCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+++|+.+|+.+.... ..+.++++.+.++..... +.....+|+||+||++|||||..+|.++|+|||
T Consensus 88 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-------~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP 160 (359)
T 2yyz_A 88 PHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLL-------DRKPTQLSGGQQQRVALARALVKQPKVLLFDEP 160 (359)
T ss_dssp TTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGT-------TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHh-------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 999999999885421 122344555555543221 223345677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 161 ~ 161 (359)
T 2yyz_A 161 L 161 (359)
T ss_dssp T
T ss_pred c
Confidence 6
No 15
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.82 E-value=8.2e-22 Score=187.14 Aligned_cols=132 Identities=19% Similarity=0.138 Sum_probs=98.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc----cccCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP----ATIEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~----~~~~~~~~~q~p~ 183 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|.......... .+..++|++|++
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---------------~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~- 92 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---------------EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF- 92 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCS---------------EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTC-
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCC---------------ceEEEECCEEcccCCHHHHHHHhhccEEEEecCC-
Confidence 689999999999999999999999997766 999999998654322211 123489999999
Q ss_pred EEEecCCCcccCHHHHHHH----------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEE
Q psy2946 184 VYNYGHLTPNANLELYQHC----------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNI 253 (455)
Q Consensus 184 ~~~~g~~sv~~n~~~~~~~----------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~ 253 (455)
.++..+|+.+|+.+.... ..+.+..+.+.++.... ..+.+...+|+||+||++|||||..+|+
T Consensus 93 -~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~LSgGq~QRv~iAral~~~p~ 165 (235)
T 3tif_A 93 -NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER------FANHKPNQLSGGQQQRVAIARALANNPP 165 (235)
T ss_dssp -CCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG------GTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred -ccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh------hhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 889999999999875421 11223333444433211 1133456677899999999999999999
Q ss_pred EEecCchhh
Q psy2946 254 LVLDQERLY 262 (455)
Q Consensus 254 vll~DEpl~ 262 (455)
++|+|||+.
T Consensus 166 llllDEPts 174 (235)
T 3tif_A 166 IILADQPTW 174 (235)
T ss_dssp EEEEESTTT
T ss_pred EEEEeCCcc
Confidence 999999973
No 16
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.82 E-value=1.3e-22 Score=195.06 Aligned_cols=129 Identities=19% Similarity=0.153 Sum_probs=98.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|...... ....+..++|++|++ .++
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---------------~G~I~~~g~~~~~~-~~~~~~~i~~v~q~~--~l~ 100 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIKPS---------------SGIVTVFGKNVVEE-PHEVRKLISYLPEEA--GAY 100 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCS---------------EEEEEETTEETTTC-HHHHHTTEEEECTTC--CCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCC---------------ceEEEECCEECCcc-HHHHhhcEEEEcCCC--CCC
Confidence 799999999999999999999999997666 89999999754321 112334578999998 778
Q ss_pred cCCCcccCHHHHHHHH-------HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHCV-------ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-------~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
..+|+.+|+.++.... .+.++.+.+.++.... .+.+...+|+||+||++|||||..+|+++|+|||
T Consensus 101 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-------~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP 173 (256)
T 1vpl_A 101 RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK-------IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEP 173 (256)
T ss_dssp TTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGG-------GGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchH-------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 8899999998865331 1223444455544321 1334456677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 174 t 174 (256)
T 1vpl_A 174 T 174 (256)
T ss_dssp T
T ss_pred c
Confidence 7
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.82 E-value=7.6e-23 Score=194.92 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=96.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc-cccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP-ATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~-~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|.......... .+..++|++|++ .+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~--~l 92 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---------------KGKIIFNGQDITNKPAHVINRMGIALVPEGR--RI 92 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCS---------------EEEEEETTEECTTCCHHHHHHTTEEEECSSC--CC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCEECCCCCHHHHHhCCEEEEecCC--cc
Confidence 689999999999999999999999997666 899999997643221111 233478999998 78
Q ss_pred ecCCCcccCHHHHHH------HHHHHHHHHHHhhc-cCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCc
Q psy2946 187 YGHLTPNANLELYQH------CVERLWKSVDERMN-KDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE 259 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~------~~~~l~~~~~~~~~-~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DE 259 (455)
|..+|+.+|+.++.. ...+.++.+.+.++ .... .+.+...+|+||+||++|||||..+|.++|+||
T Consensus 93 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~-------~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDE 165 (240)
T 1ji0_A 93 FPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER-------LKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE 165 (240)
T ss_dssp CTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTT-------TTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhH-------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 888999999987531 11223334444442 3221 123345567799999999999999999999999
Q ss_pred hh
Q psy2946 260 RL 261 (455)
Q Consensus 260 pl 261 (455)
|+
T Consensus 166 Pt 167 (240)
T 1ji0_A 166 PS 167 (240)
T ss_dssp TT
T ss_pred Cc
Confidence 97
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.81 E-value=3.6e-22 Score=201.22 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=93.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|....... +....++|++|++ .+|
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---------------~G~I~i~g~~i~~~~--~~~r~ig~v~Q~~--~l~ 95 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---------------EGRIYFGDRDVTYLP--PKDRNISMVFQSY--AVW 95 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCS---------------EEEEEETTEECTTSC--GGGGTEEEEEC-------
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCC---------------ceEEEECCEECCCCC--hhhCcEEEEecCc--ccC
Confidence 799999999999999999999999997666 999999998654321 2235689999998 789
Q ss_pred cCCCcccCHHHHHHH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 188 GHLTPNANLELYQHC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+++|+.+|+.+.... ..+..+.+.+.++..... +.....+|+||+||++|||||..+|.++|+|||
T Consensus 96 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-------~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 168 (372)
T 1v43_A 96 PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL-------NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEP 168 (372)
T ss_dssp -CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGT-------TSCTTTCCSSCHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999885322 123344555555443221 233455677999999999999999999999999
Q ss_pred h
Q psy2946 261 L 261 (455)
Q Consensus 261 l 261 (455)
+
T Consensus 169 ~ 169 (372)
T 1v43_A 169 L 169 (372)
T ss_dssp T
T ss_pred C
Confidence 6
No 19
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.81 E-value=1.1e-22 Score=196.57 Aligned_cols=130 Identities=14% Similarity=0.084 Sum_probs=98.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|...............+|++|++ .++
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---------------~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~--~~~ 97 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---------------HGECHLLGQNLNSWQPKALARTRAVMRQYS--ELA 97 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSCCS---------------SCEEEETTEETTTSCHHHHHHHEEEECSCC--CCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCC---------------CcEEEECCEECCcCCHHHHhheEEEEecCC--ccC
Confidence 699999999999999999999999997666 999999998654332222334578899988 666
Q ss_pred cCCCcccCHHHHHHH-----HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCC------CEEEEe
Q psy2946 188 GHLTPNANLELYQHC-----VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRV------DNILVL 256 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-----~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~------~~~vll 256 (455)
..+|+.+|+.+.... ..+.++.+.+.++..... |.....+|+||+||++|||||.. +|+++|
T Consensus 98 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLl 170 (266)
T 4g1u_C 98 FPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALA-------QRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLF 170 (266)
T ss_dssp SCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTT-------TSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEE
T ss_pred CCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHh-------cCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 678999998875421 233345555555543321 22334567799999999999998 999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 171 lDEPt 175 (266)
T 4g1u_C 171 LDEPT 175 (266)
T ss_dssp ECCCC
T ss_pred EeCcc
Confidence 99996
No 20
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.81 E-value=8.4e-23 Score=196.57 Aligned_cols=131 Identities=17% Similarity=0.148 Sum_probs=96.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccc-cccccCCCCcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE-RPATIEDGFSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~-~~~~~~~~~~~q~p~~~~ 186 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|........ ...+..++|++|++ .+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---------------~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~--~l 93 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLKAD---------------EGRVYFENKDITNKEPAELYHYGIVRTFQTP--QP 93 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCS---------------EEEEEETTEECTTCCHHHHHHHTEEECCCCC--GG
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CcEEEECCEECCCCCHHHHHhCCEEEEccCC--cc
Confidence 699999999999999999999999997666 8999999976432111 11234578999998 78
Q ss_pred ecCCCcccCHHHHHHH--------------------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHH
Q psy2946 187 YGHLTPNANLELYQHC--------------------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAK 246 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~--------------------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~ 246 (455)
+.++|+.+|+.+.... ....++.+.+.++.... .+.+...+|+||+||++|||
T Consensus 94 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~LSgGqkQrv~iAr 166 (257)
T 1g6h_A 94 LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-------YDRKAGELSGGQMKLVEIGR 166 (257)
T ss_dssp GGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-------TTSBGGGSCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchh-------hCCCchhCCHHHHHHHHHHH
Confidence 8889999998764211 11223444455443321 12344556779999999999
Q ss_pred HcCCCEEEEecCchhh
Q psy2946 247 SLRVDNILVLDQERLY 262 (455)
Q Consensus 247 al~~~~~vll~DEpl~ 262 (455)
||..+|+++|+|||+.
T Consensus 167 aL~~~p~lllLDEPts 182 (257)
T 1g6h_A 167 ALMTNPKMIVMDEPIA 182 (257)
T ss_dssp HHHTCCSEEEEESTTT
T ss_pred HHHcCCCEEEEeCCcc
Confidence 9999999999999973
No 21
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.81 E-value=2e-22 Score=194.41 Aligned_cols=131 Identities=16% Similarity=0.104 Sum_probs=97.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecc----------ccc---cccccC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGAL----------VIE---RPATIE 174 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~----------~~~---~~~~~~ 174 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|..... ... ...+..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---------------~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEKPS---------------EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR 94 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCS---------------EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------CcEEEECCEEccccccccccccccChhhHHHHhcc
Confidence 799999999999999999999999997666 8999999975431 000 112345
Q ss_pred CCCcccCceEEEecCCCcccCHHHHH-HH-------HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHH
Q psy2946 175 DGFSQLAPIVYNYGHLTPNANLELYQ-HC-------VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAK 246 (455)
Q Consensus 175 ~~~~~q~p~~~~~g~~sv~~n~~~~~-~~-------~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~ 246 (455)
++|++|++ .+|..+|+.+|+.+.. .. ....++.+.+.++.... +.+.....+|+||+||++|||
T Consensus 95 i~~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~------~~~~~~~~LSgGq~qRv~lAr 166 (262)
T 1b0u_A 95 LTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDER------AQGKYPVHLSGGQQQRVSIAR 166 (262)
T ss_dssp EEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHH------HHTSCGGGSCHHHHHHHHHHH
T ss_pred eEEEecCc--ccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCch------hhcCCcccCCHHHHHHHHHHH
Confidence 78999998 7888999999998853 11 12233444444443211 023344566779999999999
Q ss_pred HcCCCEEEEecCchh
Q psy2946 247 SLRVDNILVLDQERL 261 (455)
Q Consensus 247 al~~~~~vll~DEpl 261 (455)
||..+|.++|+|||+
T Consensus 167 aL~~~p~lllLDEPt 181 (262)
T 1b0u_A 167 ALAMEPDVLLFDEPT 181 (262)
T ss_dssp HHHTCCSEEEEESTT
T ss_pred HHhcCCCEEEEeCCC
Confidence 999999999999997
No 22
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.80 E-value=2.8e-22 Score=191.36 Aligned_cols=136 Identities=16% Similarity=0.119 Sum_probs=99.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|..........++..++|++|++ .+|
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~--~l~ 88 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQPT---------------AGEITIDGQPIDNISLENWRSQIGFVSQDS--AIM 88 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCS---------------BSCEEETTEESTTTSCSCCTTTCCEECCSS--CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------CcEEEECCEEhhhCCHHHHHhhEEEEcCCC--ccc
Confidence 699999999999999999999999997665 899999998654332334456689999998 666
Q ss_pred cCCCcccCHHHHHH--HHHHHHHHHHHhhccCCCCCc----ccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQH--CVERLWKSVDERMNKDSKTNS----SGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~--~~~~l~~~~~~~~~~~~~~~~----s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.. |+.+|+.++.. ..........+.++....... ....++..+..+|+||+||++|||||..+|.++|+|||+
T Consensus 89 ~~-tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPt 167 (243)
T 1mv5_A 89 AG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEAT 167 (243)
T ss_dssp CE-EHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred cc-cHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 64 99999877521 111223333344443222111 112345566778889999999999999999999999997
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.79 E-value=2.8e-22 Score=195.06 Aligned_cols=132 Identities=15% Similarity=0.064 Sum_probs=93.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeec--cccccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGA--LVIERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~--~~~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|.... .......+..++|++|++...
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---------------~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~ 109 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEPAT---------------SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEK 109 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCS---------------EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCC---------------CeEEEECCEEcccccCCHHHHcCcEEEEEcCcccc
Confidence 699999999999999999999999997666 899999987543 111112344578999986212
Q ss_pred EecCCCcccCHHHHHH-----------HHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEE
Q psy2946 186 NYGHLTPNANLELYQH-----------CVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNIL 254 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~v 254 (455)
+...+|+.+|+.+... ...+.++.+.+.++..... +.+...+|+||+||++|||||..+|++
T Consensus 110 ~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~~~LSgGqkqRv~lAraL~~~p~l 182 (279)
T 2ihy_A 110 FQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA-------QQYIGYLSTGEKQRVMIARALMGQPQV 182 (279)
T ss_dssp SCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGT-------TSBGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred cCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh-------cCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence 3445699999876311 0112233444454433211 233445677999999999999999999
Q ss_pred EecCchh
Q psy2946 255 VLDQERL 261 (455)
Q Consensus 255 ll~DEpl 261 (455)
+|+|||+
T Consensus 183 LlLDEPt 189 (279)
T 2ihy_A 183 LILDEPA 189 (279)
T ss_dssp EEEESTT
T ss_pred EEEeCCc
Confidence 9999997
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.78 E-value=2.3e-21 Score=185.82 Aligned_cols=132 Identities=18% Similarity=0.069 Sum_probs=90.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH--HhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc-cccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNY--AVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP-ATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~--~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~-~~~~~~~~~q~p~~ 184 (455)
.+|++++|+||||||||||+|+|+|+ ..++ +|+|.++|.......... .+...+|++|++
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---------------~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~-- 89 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---------------RGEILLDGENILELSPDERARKGLFLAFQYP-- 89 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---------------EEEEEETTEECTTSCHHHHHHTTBCCCCCCC--
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---------------ceEEEECCEECCCCCHHHHHhCcEEEeccCC--
Confidence 68999999999999999999999998 4444 899999998643321111 123468999998
Q ss_pred EEecCCCcccCHHHHHHHH----------HHHHHHHHHhhccCCCCCcccEEEecCCCc-cCCcHHHHHHHHHHcCCCEE
Q psy2946 185 YNYGHLTPNANLELYQHCV----------ERLWKSVDERMNKDSKTNSSGMIINTCGWI-KGDGFKCLMACAKSLRVDNI 253 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~----------~~l~~~~~~~~~~~~~~~~s~~iint~g~~-~s~G~~q~~~ia~al~~~~~ 253 (455)
.+|+.+|+.+|+.+..... .+.+..+.+.++.... ..+.+... +|+||+||++|||||..+|+
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~~~LSgGqkQrv~iAraL~~~p~ 163 (250)
T 2d2e_A 90 VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDES------YLSRYLNEGFSGGEKKRNEILQLLVLEPT 163 (250)
T ss_dssp C-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGG------GGGSBTTCC----HHHHHHHHHHHHHCCS
T ss_pred ccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChh------HhcCCcccCCCHHHHHHHHHHHHHHcCCC
Confidence 7788899999998754211 1223334444443210 01223334 67799999999999999999
Q ss_pred EEecCchhh
Q psy2946 254 LVLDQERLY 262 (455)
Q Consensus 254 vll~DEpl~ 262 (455)
++|+|||+.
T Consensus 164 lllLDEPts 172 (250)
T 2d2e_A 164 YAVLDETDS 172 (250)
T ss_dssp EEEEECGGG
T ss_pred EEEEeCCCc
Confidence 999999973
No 25
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.78 E-value=6.8e-20 Score=174.35 Aligned_cols=127 Identities=20% Similarity=0.217 Sum_probs=96.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+ ++++|+||||||||||+|+|+|+..++ +|+|.++|...... ...+..++|++|++ .++
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~~~~~~--~~~~~~i~~v~q~~--~l~ 82 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVKPD---------------RGEVRLNGADITPL--PPERRGIGFVPQDY--ALF 82 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSCCS---------------EEEEEETTEECTTS--CTTTSCCBCCCSSC--CCC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEECCcC--chhhCcEEEEcCCC--ccC
Confidence 57 999999999999999999999997666 89999999764321 22345689999998 788
Q ss_pred cCCCcccCHHHHHHH-----HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHC-----VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-----~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
+.+|+.+|+.+.... ..+.++.+.+.++..... |.+...+|+||+||++|||||..+|+++|+|||+
T Consensus 83 ~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 154 (240)
T 2onk_A 83 PHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL-------DRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp TTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT-------TCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred CCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHh-------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 899999999874321 122334455555443221 2334556779999999999999999999999997
No 26
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.78 E-value=2.5e-21 Score=190.29 Aligned_cols=136 Identities=16% Similarity=0.145 Sum_probs=98.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+||||||||||+|+|+|++.+. +|+|.++|..........++..++|++|++ .+|
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---------------~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~--~lf 140 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYDIS---------------SGCIRIDGQDISQVTQASLRSHIGVVPQDT--VLF 140 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSCCS---------------EEEEEETTEETTSBCHHHHHHTEEEECSSC--CCC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCC---------------CcEEEECCEEcccCCHHHHhcceEEEecCC--ccC
Confidence 699999999999999999999999996555 999999998765544344566789999999 677
Q ss_pred cCCCcccCHHHHHHHH-HHHHHHHHHhhccCC----CCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCV-ERLWKSVDERMNKDS----KTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-~~l~~~~~~~~~~~~----~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
. .|+++|+.+..... ........+..+... ......-.++..|..+|+||+||++|||||..+|+|+|+|||+
T Consensus 141 ~-~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPt 218 (306)
T 3nh6_A 141 N-DTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEAT 218 (306)
T ss_dssp S-EEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred c-ccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 4 49999998753211 111111111111110 0011123455667778889999999999999999999999996
No 27
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.78 E-value=4.7e-21 Score=194.23 Aligned_cols=136 Identities=18% Similarity=0.171 Sum_probs=96.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+.. . +|+|.++|...........+..++|++|++ .+|
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---------------~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~--~lf 106 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---------------EGEIQIDGVSWDSITLEQWRKAFGVIPQKV--FIF 106 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCSE-E---------------EEEEEESSCBTTSSCHHHHHHTEEEESCCC--CCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCC-C---------------CeEEEECCEECCcCChHHHhCCEEEEcCCc--ccC
Confidence 6999999999999999999999999865 5 899999998654433333445689999998 666
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCC----CCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDS----KTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~----~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
. .|+.+|+.++.....+......+.++... ........+.-.+..+|+||+||++|||||..+|+++|+|||+.
T Consensus 107 ~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts 184 (390)
T 3gd7_A 107 S-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSA 184 (390)
T ss_dssp S-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHH
T ss_pred c-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 5 59999987543221222233333333211 11111123344455578899999999999999999999999963
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.78 E-value=6.1e-22 Score=191.92 Aligned_cols=131 Identities=18% Similarity=0.153 Sum_probs=93.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|..........++..++|++|++ .+|
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---------------~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~--~l~ 105 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQPT---------------GGKVLLDGEPLVQYDHHYLHTQVAAVGQEP--LLF 105 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCS---------------EEEEEETTEEGGGBCHHHHHHHEEEECSSC--CCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------CCEEEECCEEcccCCHHHHhccEEEEecCC--ccc
Confidence 799999999999999999999999997665 899999998653322222344578999998 667
Q ss_pred cCCCcccCHHHHHH------HHHHH-----HHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 188 GHLTPNANLELYQH------CVERL-----WKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 188 g~~sv~~n~~~~~~------~~~~l-----~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
. .|+.+|+.++.. ..... +..+.+.+.. ... -..+..+..+|+||+||++|||||..+|.++|
T Consensus 106 ~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~----gl~-~~~~~~~~~LSgGq~QRv~lAraL~~~p~lll 179 (271)
T 2ixe_A 106 G-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQ----GYD-TEVGETGNQLSGGQRQAVALARALIRKPRLLI 179 (271)
T ss_dssp S-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTT----GGG-SBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred c-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhc----chh-hhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6 499999987421 11110 1112222210 010 11244556677899999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 180 LDEPt 184 (271)
T 2ixe_A 180 LDNAT 184 (271)
T ss_dssp EESTT
T ss_pred EECCc
Confidence 99997
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.77 E-value=3.4e-21 Score=186.31 Aligned_cols=131 Identities=16% Similarity=0.052 Sum_probs=92.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH--hcCCCCCCccEEEecCCCCCcCCCCCeeecccccccc-ccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA--VRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPA-TIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~--~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~-~~~~~~~~q~p~~ 184 (455)
.+|++++|+||||||||||+|+|+|+. .++ +|+|.++|........... +..++|++|++
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---------------~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~-- 106 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---------------GGTVEFKGKDLLALSPEDRAGEGIFMAFQYP-- 106 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---------------EEEEEETTEEGGGSCHHHHHHHTEEEECSSC--
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---------------CeEEEECCEECCcCCHHHHhhCCEEEEccCc--
Confidence 799999999999999999999999984 334 8999999986433211111 23467899998
Q ss_pred EEecCCCcccCHHHHHHHH--------------HHHHHHHHHhhccCCCCCcccEEEecCCC-ccCCcHHHHHHHHHHcC
Q psy2946 185 YNYGHLTPNANLELYQHCV--------------ERLWKSVDERMNKDSKTNSSGMIINTCGW-IKGDGFKCLMACAKSLR 249 (455)
Q Consensus 185 ~~~g~~sv~~n~~~~~~~~--------------~~l~~~~~~~~~~~~~~~~s~~iint~g~-~~s~G~~q~~~ia~al~ 249 (455)
.++..+|+.+|+.+..... ...++.+.+.++..... .+.+.. .+|+||+||++|||||.
T Consensus 107 ~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~~~~~~~~LSgGq~QRv~iAraL~ 180 (267)
T 2zu0_C 107 VEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDL------LTRSVNVGFSGGEKKRNDILQMAV 180 (267)
T ss_dssp CCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTT------TTSBTTTTCCHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhH------hcCCcccCCCHHHHHHHHHHHHHH
Confidence 7888899999887643211 11233444444432110 012222 36779999999999999
Q ss_pred CCEEEEecCchh
Q psy2946 250 VDNILVLDQERL 261 (455)
Q Consensus 250 ~~~~vll~DEpl 261 (455)
.+|+++|+|||+
T Consensus 181 ~~p~lLlLDEPt 192 (267)
T 2zu0_C 181 LEPELCILDESD 192 (267)
T ss_dssp HCCSEEEEESTT
T ss_pred hCCCEEEEeCCC
Confidence 999999999997
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.77 E-value=2.3e-21 Score=185.42 Aligned_cols=136 Identities=18% Similarity=0.126 Sum_probs=93.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|..........++..++|++|++ .+|
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---------------~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~--~l~ 95 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---------------NGQVLIDGHDLALADPNWLRRQVGVVLQDN--VLL 95 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCS---------------EEEEEETTEETTTSCHHHHHHHEEEECSSC--CCT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------CcEEEECCEEhhhCCHHHHHhcEEEEeCCC--ccc
Confidence 589999999999999999999999997665 899999997643321122334578999998 666
Q ss_pred cCCCcccCHHHHHHH-HHHHHHHHHHhhccCCC----CCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHC-VERLWKSVDERMNKDSK----TNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-~~~l~~~~~~~~~~~~~----~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
. .|+.+|+.++... .........+.++.... .....-.++..+..+|+||+||++|||||..+|+++|+|||+
T Consensus 96 ~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPt 173 (247)
T 2ff7_A 96 N-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEAT 173 (247)
T ss_dssp T-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred c-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 5 5999999774211 01111222222221100 000011223345567779999999999999999999999997
No 31
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.77 E-value=4.2e-21 Score=184.17 Aligned_cols=117 Identities=18% Similarity=0.129 Sum_probs=88.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|. ....++|++|++ .++
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---------------~G~I~-------------~~~~i~~v~q~~--~~~ 78 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHRPI---------------QGKIE-------------VYQSIGFVPQFF--SSP 78 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSCCS---------------EEEEE-------------ECSCEEEECSCC--CCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CcEEE-------------EeccEEEEcCCC--ccC
Confidence 689999999999999999999999997665 78775 123478899988 677
Q ss_pred cCCCcccCHHHHHH-----------HHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 188 GHLTPNANLELYQH-----------CVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 188 g~~sv~~n~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
...|+.+|+.+... ...+.++.+.+.++..... +.....+|+||+||++|||||..+|+++|
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~LSgGq~qrv~lAraL~~~p~lll 151 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLA-------KREFTSLSGGQRQLILIARAIASECKLIL 151 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGT-------TSBGGGSCHHHHHHHHHHHHHHTTCSEEE
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHh-------cCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 78899999987531 1122334445555443221 22345567799999999999999999999
Q ss_pred cCchh
Q psy2946 257 DQERL 261 (455)
Q Consensus 257 ~DEpl 261 (455)
+|||+
T Consensus 152 LDEPt 156 (253)
T 2nq2_C 152 LDEPT 156 (253)
T ss_dssp ESSSS
T ss_pred EeCCc
Confidence 99997
No 32
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.76 E-value=7.7e-21 Score=179.74 Aligned_cols=123 Identities=16% Similarity=0.235 Sum_probs=85.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|. ++|++|++ .+|
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~g~-------------i~~v~q~~--~~~ 81 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPS---------------EGKIKHSGR-------------ISFCSQFS--WIM 81 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCS---------------EEEEEECSC-------------EEEECSSC--CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCC---------------ccEEEECCE-------------EEEEecCC--ccc
Confidence 689999999999999999999999997666 899988872 56788888 667
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCC----CCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDS----KTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~----~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.. |+.+|+.++............+...... ........++..+..+|+||+||++|||||..+|+++|+|||+
T Consensus 82 ~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt 158 (229)
T 2pze_A 82 PG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 158 (229)
T ss_dssp SB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred CC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 65 9999987742110000111111111100 0000000123345567789999999999999999999999997
No 33
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.76 E-value=4.8e-21 Score=183.26 Aligned_cols=129 Identities=19% Similarity=0.118 Sum_probs=95.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+. .|. |+|.++|...........+..++|++|++ .++
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~---------------~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~--~~~ 85 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT---------------SGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQ--TPP 85 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS---------------CCE-EEEEETTEEGGGSCHHHHHHHEEEECSCC--CCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC---------------CCC-eEEEECCEECCcCCHHHHhceEEEECCCC--ccC
Confidence 699999999999999999999999984 356 99999997543221222334578999998 677
Q ss_pred cCCCcccCHHHHHHH--HHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEE-------EEecC
Q psy2946 188 GHLTPNANLELYQHC--VERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNI-------LVLDQ 258 (455)
Q Consensus 188 g~~sv~~n~~~~~~~--~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~-------vll~D 258 (455)
..+|+.+|+.++... ..+.++.+.+.++..... +.....+|+||+||++|||||..+|. ++|+|
T Consensus 86 ~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 86 FATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-------GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp TTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGT-------TSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred CCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHh-------cCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE
Confidence 888999998864210 123344455555443221 23345567799999999999999999 99999
Q ss_pred chh
Q psy2946 259 ERL 261 (455)
Q Consensus 259 Epl 261 (455)
||+
T Consensus 159 EPt 161 (249)
T 2qi9_C 159 EPM 161 (249)
T ss_dssp STT
T ss_pred CCc
Confidence 997
No 34
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.75 E-value=7e-20 Score=195.95 Aligned_cols=137 Identities=14% Similarity=0.102 Sum_probs=98.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+||||||||||+|+|+|+..++ +|+|.++|..........++..++|++|+| .+|
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---------------~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~--~l~ 429 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVD---------------SGSICLDGHDVRDYKLTNLRRHFALVSQNV--HLF 429 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------CCEEEECCEEhhhCCHHHHhcCeEEEcCCC--ccc
Confidence 699999999999999999999999996555 999999998754433334556789999999 677
Q ss_pred cCCCcccCHHHHH--HHHHHHHHHHHHhhccCCCC----CcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQ--HCVERLWKSVDERMNKDSKT----NSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~--~~~~~l~~~~~~~~~~~~~~----~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.. |++||+.+.. ....+...+..+.++..+.. ....-.++..|..+|+||+||++||||+..+|+++|+|||+
T Consensus 430 ~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpt 508 (582)
T 3b5x_A 430 ND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEAT 508 (582)
T ss_pred cc-cHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 65 9999998754 11122222222222221110 01111233456677889999999999999999999999997
Q ss_pred h
Q psy2946 262 Y 262 (455)
Q Consensus 262 ~ 262 (455)
.
T Consensus 509 s 509 (582)
T 3b5x_A 509 S 509 (582)
T ss_pred c
Confidence 3
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.75 E-value=6.6e-21 Score=181.12 Aligned_cols=123 Identities=20% Similarity=0.225 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|. ++|++|++ .++
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---------------~G~I~~~g~-------------i~~v~Q~~--~~~ 78 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMDKV---------------EGHVAIKGS-------------VAYVPQQA--WIQ 78 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSEEE---------------EEEEEECSC-------------EEEECSSC--CCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------CceEEECCE-------------EEEEcCCC--cCC
Confidence 699999999999999999999999997766 899988873 56788887 443
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCC----cccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTN----SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~----~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
..|+.+|+.++........+...+.++...... .....++..+..+|+||+||++|||||..+|+++|+|||+
T Consensus 79 -~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 155 (237)
T 2cbz_A 79 -NDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 155 (237)
T ss_dssp -SEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred -CcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 669999987743211111111112111100000 0011245566777889999999999999999999999997
No 36
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.74 E-value=5.8e-21 Score=183.96 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=92.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+.. + +|+|.++|..........++..++|++|++ .+|
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------------~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~--~l~ 105 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYD---------------A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDT--ILF 105 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC---------------C-EEEEEETTEEGGGBCHHHHHTTEEEECSSC--CCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC---------------C-CeEEEECCEEhhhcCHHHHhccEEEEcCCC--ccc
Confidence 7999999999999999999999999853 2 699999997653322223345688999998 666
Q ss_pred cCCCcccCHHHHHHH-HHHHHHHHHHhhccCC----CCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHC-VERLWKSVDERMNKDS----KTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~-~~~l~~~~~~~~~~~~----~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
. .|+.+|+.+.... .........+.++... ........++..+..+|+||+||++|||||..+|.++|+|||+
T Consensus 106 ~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 183 (260)
T 2ghi_A 106 N-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEAT 183 (260)
T ss_dssp S-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCC
T ss_pred c-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 5 4999998764210 0111112222221110 0001111234455667889999999999999999999999997
No 37
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.73 E-value=2.2e-19 Score=173.51 Aligned_cols=128 Identities=19% Similarity=0.116 Sum_probs=94.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.++|...... ..+..++|++|++. .++
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---------------~G~I~~~g~~~~~~---~~~~~i~~v~q~~~-~~~ 91 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIEPT---------------SGDVLYDGERKKGY---EIRRNIGIAFQYPE-DQF 91 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCS---------------EEEEEETTEECCHH---HHGGGEEEECSSGG-GGC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCC---------------CcEEEECCEECchH---HhhhhEEEEeccch-hhc
Confidence 689999999999999999999999997666 89999999754321 23445789999852 134
Q ss_pred cCCCcccCHHHHHHH------HHHHHHHHHHhhccC--CCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCc
Q psy2946 188 GHLTPNANLELYQHC------VERLWKSVDERMNKD--SKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE 259 (455)
Q Consensus 188 g~~sv~~n~~~~~~~------~~~l~~~~~~~~~~~--~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DE 259 (455)
...|+.+|+.++... ..+.++.+.+.++.. .. .+.+...+|+||+||++|||||..+|.++|+||
T Consensus 92 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 164 (266)
T 2yz2_A 92 FAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSF-------KDRVPFFLSGGEKRRVAIASVIVHEPDILILDE 164 (266)
T ss_dssp CCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHH-------TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred CCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCccc-------ccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 457999999875321 122344455555443 21 123344567799999999999999999999999
Q ss_pred hh
Q psy2946 260 RL 261 (455)
Q Consensus 260 pl 261 (455)
|+
T Consensus 165 Pt 166 (266)
T 2yz2_A 165 PL 166 (266)
T ss_dssp TT
T ss_pred cc
Confidence 97
No 38
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.73 E-value=7.5e-19 Score=169.33 Aligned_cols=124 Identities=19% Similarity=0.170 Sum_probs=95.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCC-CcccCceEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDG-FSQLAPIVYN 186 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~-~~~q~p~~~~ 186 (455)
. |++++|+||||||||||+|+|+|+. ++ +|+|.++|...... .. +..++ |++|++ .+
T Consensus 29 ~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---------------~G~I~~~g~~~~~~--~~-~~~i~~~v~Q~~--~l 86 (263)
T 2pjz_A 29 N-GEKVIILGPNGSGKTTLLRAISGLL-PY---------------SGNIFINGMEVRKI--RN-YIRYSTNLPEAY--EI 86 (263)
T ss_dssp C-SSEEEEECCTTSSHHHHHHHHTTSS-CC---------------EEEEEETTEEGGGC--SC-CTTEEECCGGGS--CT
T ss_pred C-CEEEEEECCCCCCHHHHHHHHhCCC-CC---------------CcEEEECCEECcch--HH-hhheEEEeCCCC--cc
Confidence 7 9999999999999999999999997 77 89999999764332 22 44578 999998 44
Q ss_pred ecCCCcccCHHHHHHHH---HHHHHHHHHhhccC-CCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 187 YGHLTPNANLELYQHCV---ERLWKSVDERMNKD-SKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~~---~~l~~~~~~~~~~~-~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
..|+.+|+.++.... .+.++.+.+.++.. .. .+.+...+|+||+||++|||||..+|.++|+|||+.
T Consensus 87 --~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 157 (263)
T 2pjz_A 87 --GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEI-------LRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFE 157 (263)
T ss_dssp --TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGG-------GGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTT
T ss_pred --CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhH-------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 789999998865421 22344455555433 21 134455677899999999999999999999999973
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.71 E-value=1.4e-19 Score=193.50 Aligned_cols=163 Identities=17% Similarity=0.184 Sum_probs=110.1
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.+++++ ..+.|...+.+.++-.|++. ++|++++|+||||||||||+++|+|+..++
T Consensus 339 ~i~~~~--v~~~y~~~~~~~l~~isl~i-------------~~G~~~~ivG~sGsGKSTll~~l~g~~~p~--------- 394 (578)
T 4a82_A 339 RIDIDH--VSFQYNDNEAPILKDINLSI-------------EKGETVAFVGMSGGGKSTLINLIPRFYDVT--------- 394 (578)
T ss_dssp CEEEEE--EEECSCSSSCCSEEEEEEEE-------------CTTCEEEEECSTTSSHHHHHTTTTTSSCCS---------
T ss_pred eEEEEE--EEEEcCCCCCcceeeeEEEE-------------CCCCEEEEECCCCChHHHHHHHHhcCCCCC---------
Confidence 477775 66777544434433222222 699999999999999999999999996555
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHH-HHHHHHHHHHhhccC----CCCC
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHC-VERLWKSVDERMNKD----SKTN 221 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~-~~~l~~~~~~~~~~~----~~~~ 221 (455)
+|+|.++|........+.++..++|++|+| .+|.. |++||+.+.... ..+...+..+..+.. ....
T Consensus 395 ------~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~--~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ 465 (578)
T 4a82_A 395 ------SGQILIDGHNIKDFLTGSLRNQIGLVQQDN--ILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQ 465 (578)
T ss_dssp ------EEEEEETTEEGGGSCHHHHHHTEEEECSSC--CCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTT
T ss_pred ------CcEEEECCEEhhhCCHHHHhhheEEEeCCC--ccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcc
Confidence 999999998765544444566789999999 77765 999999874311 011111111111110 0000
Q ss_pred cccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 222 SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 222 ~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
...-.++..|..+|+||+||++||||+..+|+++|+|||+.
T Consensus 466 g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts 506 (578)
T 4a82_A 466 GYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATS 506 (578)
T ss_dssp GGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred hhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 11112334456678899999999999999999999999973
No 40
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.70 E-value=2e-19 Score=192.41 Aligned_cols=162 Identities=16% Similarity=0.137 Sum_probs=111.7
Q ss_pred EEEEEeeccceeeeecCCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEE
Q psy2946 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIF 146 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~ 146 (455)
.|++++ ..+.|.....+.++-.|++. ++|++++|+||||||||||+++|+|+..++
T Consensus 341 ~i~~~~--v~~~y~~~~~~~l~~isl~i-------------~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~--------- 396 (587)
T 3qf4_A 341 SVSFEN--VEFRYFENTDPVLSGVNFSV-------------KPGSLVAVLGETGSGKSTLMNLIPRLIDPE--------- 396 (587)
T ss_dssp CEEEEE--EEECSSSSSCCSEEEEEEEE-------------CTTCEEEEECSSSSSHHHHHHTTTTSSCCS---------
T ss_pred cEEEEE--EEEEcCCCCCcceeceEEEE-------------cCCCEEEEECCCCCCHHHHHHHHhCCccCC---------
Confidence 477775 66777544444433222222 699999999999999999999999996555
Q ss_pred EecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHH-HHHHHHHHHhhccC----CCCC
Q psy2946 147 VDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCV-ERLWKSVDERMNKD----SKTN 221 (455)
Q Consensus 147 vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~-~~l~~~~~~~~~~~----~~~~ 221 (455)
+|+|.++|........+.++..++|++|++ .+|.. |++||+.+..... .+......+..+.. ....
T Consensus 397 ------~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~--~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 467 (587)
T 3qf4_A 397 ------RGRVEVDELDVRTVKLKDLRGHISAVPQET--VLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPE 467 (587)
T ss_dssp ------EEEEEESSSBGGGBCHHHHHHHEEEECSSC--CCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSS
T ss_pred ------CcEEEECCEEcccCCHHHHHhheEEECCCC--cCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhccc
Confidence 999999999766554444566789999999 67754 9999998743210 11111111111110 0011
Q ss_pred cccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 222 SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 222 ~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...-.++..|..+|+||+||++||||+..+|+++|+|||+
T Consensus 468 g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpt 507 (587)
T 3qf4_A 468 GYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCT 507 (587)
T ss_dssp GGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCC
T ss_pred chhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 1223456677788889999999999999999999999997
No 41
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.70 E-value=1.5e-19 Score=193.36 Aligned_cols=136 Identities=16% Similarity=0.147 Sum_probs=96.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+||||||||||+|+|+|+..++ +|+|.++|..........++..++|++|+| .+|
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---------------~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~--~l~ 429 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYDID---------------EGHILMDGHDLREYTLASLRNQVALVSQNV--HLF 429 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTCCS---------------EEEEEETTEETTTBCHHHHHHTEEEECSSC--CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccCCC---------------CCeEEECCEEccccCHHHHHhhCeEEccCC--cCC
Confidence 799999999999999999999999996555 999999998654433333455689999999 677
Q ss_pred cCCCcccCHHHHH--HHHHHHHHHHHHhhccCCC----CCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQ--HCVERLWKSVDERMNKDSK----TNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~--~~~~~l~~~~~~~~~~~~~----~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.. |++||+.+.. ....+...+..+.++..+. .....-.++..|..+|+||+||++||||+..+|+++|+|||+
T Consensus 430 ~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpt 508 (582)
T 3b60_A 430 ND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 508 (582)
T ss_dssp SS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTT
T ss_pred CC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 65 9999998754 1111112222222221100 000111233456677889999999999999999999999997
No 42
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.70 E-value=1.6e-19 Score=176.45 Aligned_cols=141 Identities=15% Similarity=0.206 Sum_probs=85.1
Q ss_pred cchhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
+++++.|+++.+ ..+++++ .+|++++|+||||||||||+|+|+|+..++ +|+|.++|
T Consensus 39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---------------~G~I~~~g 99 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---------------EGKIKHSG 99 (290)
T ss_dssp -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---------------EEEEECCS
T ss_pred ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---------------CcEEEECC
Confidence 457777777641 2344443 899999999999999999999999997666 89998887
Q ss_pred eeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHHHHHHHHHHHHhhccC----CCCCcccEEEecCCCccCC
Q psy2946 161 TIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKD----SKTNSSGMIINTCGWIKGD 236 (455)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~----~~~~~s~~iint~g~~~s~ 236 (455)
. ++|++|++ .+|.. |+.+|+. .............+..+.. .........++..+..+|+
T Consensus 100 ~-------------i~~v~Q~~--~l~~~-tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSg 162 (290)
T 2bbs_A 100 R-------------ISFCSQNS--WIMPG-TIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSG 162 (290)
T ss_dssp C-------------EEEECSSC--CCCSS-BHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCH
T ss_pred E-------------EEEEeCCC--ccCcc-cHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCH
Confidence 2 56788887 66665 9999886 2210000011111111110 0000000012223445677
Q ss_pred cHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 237 GFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 237 G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
||+||++|||||..+|.++|+|||+
T Consensus 163 Gq~QRv~lAraL~~~p~lllLDEPt 187 (290)
T 2bbs_A 163 GQRARISLARAVYKDADLYLLDSPF 187 (290)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCc
Confidence 9999999999999999999999997
No 43
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.68 E-value=3.7e-19 Score=190.77 Aligned_cols=136 Identities=21% Similarity=0.193 Sum_probs=96.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+||||||||||+|+|+|+..++ +|+|.++|..........++..+++++|++ .+|
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---------------~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~--~l~ 430 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYDPA---------------SGTISLDGHDIRQLNPVWLRSKIGTVSQEP--ILF 430 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSCCS---------------EEEEEETTEETTTBCHHHHHHSEEEECSSC--CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCC---------------CcEEEECCEEhhhCCHHHHHhceEEEccCC--ccc
Confidence 699999999999999999999999996555 999999998654433333455689999999 677
Q ss_pred cCCCcccCHHHHHHH----HHHHHHHHHHhhccCCC----CCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCc
Q psy2946 188 GHLTPNANLELYQHC----VERLWKSVDERMNKDSK----TNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE 259 (455)
Q Consensus 188 g~~sv~~n~~~~~~~----~~~l~~~~~~~~~~~~~----~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DE 259 (455)
.. |+++|+.+.... ..+..++..+.++..+. .....-.++-.|..+|+||+||++||||+..+|+++|+||
T Consensus 431 ~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDE 509 (595)
T 2yl4_A 431 SC-SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDE 509 (595)
T ss_dssp SS-BHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred CC-CHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 64 999999875321 11222223333221100 0001112233456678899999999999999999999999
Q ss_pred hh
Q psy2946 260 RL 261 (455)
Q Consensus 260 pl 261 (455)
|+
T Consensus 510 pt 511 (595)
T 2yl4_A 510 AT 511 (595)
T ss_dssp CC
T ss_pred cc
Confidence 96
No 44
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.66 E-value=5e-19 Score=189.77 Aligned_cols=136 Identities=17% Similarity=0.212 Sum_probs=94.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+||||||||||+|+|+|+..++ +|+|.++|........+.++..++|++|+| .+|
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---------------~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~--~lf 441 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVD---------------RGQILVDGIDIRKIKRSSLRSSIGIVLQDT--ILF 441 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSCCS---------------EEEEEETTEEGGGSCHHHHHHHEEEECTTC--CCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcCCC---------------CeEEEECCEEhhhCCHHHHHhceEEEeCCC--ccc
Confidence 799999999999999999999999996555 999999998766544444566789999999 677
Q ss_pred cCCCcccCHHHHHHHH-HHHHHHHHHhhccC----CCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCV-ERLWKSVDERMNKD----SKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~-~~l~~~~~~~~~~~----~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.. |+++|+.+..... .+......+..+.. .......-.++-.|..+|+||+||++||||+..+|+++|+|||+
T Consensus 442 ~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpt 519 (598)
T 3qf4_B 442 ST-TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEAT 519 (598)
T ss_dssp SS-BHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCC
T ss_pred cc-cHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 54 9999998742110 01111111111100 00000011122234556779999999999999999999999997
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.65 E-value=6e-18 Score=195.84 Aligned_cols=162 Identities=17% Similarity=0.175 Sum_probs=114.3
Q ss_pred EEEEEeeccceeeeec-CCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccE
Q psy2946 67 SITMKNARKNMTYVSK-ETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPI 145 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~-~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~ 145 (455)
.|++++ +.+.|... +.+.++-.|++. ++|++++|||++|||||||+++|.++.
T Consensus 1076 ~I~f~n--Vsf~Y~~~~~~~VL~~isl~I-------------~~Ge~vaIVG~SGsGKSTL~~lL~rl~----------- 1129 (1321)
T 4f4c_A 1076 KVIFKN--VRFAYPERPEIEILKGLSFSV-------------EPGQTLALVGPSGCGKSTVVALLERFY----------- 1129 (1321)
T ss_dssp CEEEEE--EEECCTTSCSSCSEEEEEEEE-------------CTTCEEEEECSTTSSTTSHHHHHTTSS-----------
T ss_pred eEEEEE--EEEeCCCCCCCccccceeEEE-------------CCCCEEEEECCCCChHHHHHHHHhcCc-----------
Confidence 478885 78888643 334443222222 799999999999999999999999985
Q ss_pred EEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHH---HHHHHHHHHHHhhccCC----
Q psy2946 146 FVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQH---CVERLWKSVDERMNKDS---- 218 (455)
Q Consensus 146 ~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~---~~~~l~~~~~~~~~~~~---- 218 (455)
||.+|+|.++|..+.....+.++..+++++|+| ++|.. |+++|+.+... ...+...+..+..+..+
T Consensus 1130 ----~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp--~LF~g-TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~ 1202 (1321)
T 4f4c_A 1130 ----DTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEP--TLFDC-SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAE 1202 (1321)
T ss_dssp ----CCSSSEEEETTEETTTBCHHHHHTTEEEECSSC--CCCSE-EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHT
T ss_pred ----cCCCCEEEECCEEhhhCCHHHHHhheEEECCCC--EeeCc-cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHc
Confidence 455999999999887776677788899999999 77765 89999876421 11111111112211110
Q ss_pred CCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 219 KTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 219 ~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
......-.+.-.|-.+|+|||||++|||||..+|+|+|+||++
T Consensus 1203 Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaT 1245 (1321)
T 4f4c_A 1203 LPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT 1245 (1321)
T ss_dssp STTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCC
T ss_pred CcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCcc
Confidence 0011112334456677889999999999999999999999996
No 46
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.64 E-value=4.4e-18 Score=196.98 Aligned_cols=162 Identities=23% Similarity=0.279 Sum_probs=114.9
Q ss_pred EEEEEeeccceeeeec-CCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccE
Q psy2946 67 SITMKNARKNMTYVSK-ETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPI 145 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~-~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~ 145 (455)
.|++++ ..+.|.+. +.+.++-.|++. ++|+.++|+||+|||||||+++|+|+.
T Consensus 415 ~I~~~n--vsF~Y~~~~~~~vL~~isl~i-------------~~G~~vaivG~sGsGKSTll~ll~~~~----------- 468 (1321)
T 4f4c_A 415 DITVEN--VHFTYPSRPDVPILRGMNLRV-------------NAGQTVALVGSSGCGKSTIISLLLRYY----------- 468 (1321)
T ss_dssp CEEEEE--EEECCSSSTTSCSEEEEEEEE-------------CTTCEEEEEECSSSCHHHHHHHHTTSS-----------
T ss_pred cEEEEE--eeeeCCCCCCCceeeceEEee-------------cCCcEEEEEecCCCcHHHHHHHhcccc-----------
Confidence 478885 88888653 345554333332 799999999999999999999999985
Q ss_pred EEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHH-HHHHHHHHHHhhccC----CCC
Q psy2946 146 FVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHC-VERLWKSVDERMNKD----SKT 220 (455)
Q Consensus 146 ~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~-~~~l~~~~~~~~~~~----~~~ 220 (455)
||.+|+|.++|........+.++..++|++|+| ++|.. |++||+.+.... ..+...+..+..... ...
T Consensus 469 ----~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~--~Lf~~-TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp 541 (1321)
T 4f4c_A 469 ----DVLKGKITIDGVDVRDINLEFLRKNVAVVSQEP--ALFNC-TIEENISLGKEGITREEMVAACKMANAEKFIKTLP 541 (1321)
T ss_dssp ----CCSEEEEEETTEETTTSCHHHHHHHEEEECSSC--CCCSE-EHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHST
T ss_pred ----ccccCcccCCCccchhccHHHHhhcccccCCcc--eeeCC-chhHHHhhhcccchHHHHHHHHHHccchhHHHcCC
Confidence 455999999999877665566677789999999 66655 999999886421 111111111111110 001
Q ss_pred CcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 221 NSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 221 ~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
....-.+.-.|..+|+|||||++||||+..+|+|+|+|||+
T Consensus 542 ~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~t 582 (1321)
T 4f4c_A 542 NGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT 582 (1321)
T ss_dssp TTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEeccc
Confidence 11122344567778889999999999999999999999996
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.61 E-value=1.7e-17 Score=191.51 Aligned_cols=161 Identities=20% Similarity=0.226 Sum_probs=109.7
Q ss_pred EEEEEeeccceeeeec-CCcchhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccE
Q psy2946 67 SITMKNARKNMTYVSK-ETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPI 145 (455)
Q Consensus 67 ~i~i~g~~~~~~y~~~-~t~ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~ 145 (455)
.|++++ ..+.|... +.+.++-.|++. ++|++++|+||||||||||+++|+|+..++
T Consensus 387 ~i~~~~--v~~~y~~~~~~~vL~~isl~i-------------~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~-------- 443 (1284)
T 3g5u_A 387 NLEFKN--IHFSYPSRKEVQILKGLNLKV-------------KSGQTVALVGNSGCGKSTTVQLMQRLYDPL-------- 443 (1284)
T ss_dssp CEEEEE--EEECCSSTTSCCSEEEEEEEE-------------CTTCEEEEECCSSSSHHHHHHHTTTSSCCS--------
T ss_pred eEEEEE--EEEEcCCCCCCcceecceEEE-------------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC--------
Confidence 377875 77777643 233333222222 799999999999999999999999985544
Q ss_pred EEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCCcccCHHHHHHH--HHHHHHHHHHhhccC----CC
Q psy2946 146 FVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHC--VERLWKSVDERMNKD----SK 219 (455)
Q Consensus 146 ~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~--~~~l~~~~~~~~~~~----~~ 219 (455)
+|+|.++|........+.++..+++++|+| .+|.. |+++|+.+.... .++..+ ..+..... ..
T Consensus 444 -------~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~--~l~~~-ti~eNi~~g~~~~~~~~~~~-~~~~~~~~~~i~~l 512 (1284)
T 3g5u_A 444 -------DGMVSIDGQDIRTINVRYLREIIGVVSQEP--VLFAT-TIAENIRYGREDVTMDEIEK-AVKEANAYDFIMKL 512 (1284)
T ss_dssp -------EEEEEETTEEGGGSCHHHHHHHEEEECSSC--CCCSS-CHHHHHHHHCSSCCHHHHHH-HHHHTTCHHHHHHS
T ss_pred -------CeEEEECCEEHHhCCHHHHHhheEEEcCCC--ccCCc-cHHHHHhcCCCCCCHHHHHH-HHHHhCcHHHHHhc
Confidence 999999999776554445566789999999 77765 999999886421 111111 11111000 00
Q ss_pred CCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 220 TNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 220 ~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
.....-.+...|..+|+||+||++||||+..+|+|+|+|||+
T Consensus 513 ~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpt 554 (1284)
T 3g5u_A 513 PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 554 (1284)
T ss_dssp TTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred cccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 000111223356667889999999999999999999999996
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.57 E-value=6.6e-17 Score=186.68 Aligned_cols=135 Identities=21% Similarity=0.219 Sum_probs=95.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
++|++++|+|+||||||||+++|+|+..++ +|+|.++|........+.++..++|++|+| .+|
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---------------~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~--~l~ 1119 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFYDPM---------------AGSVFLDGKEIKQLNVQWLRAQLGIVSQEP--ILF 1119 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSSCCS---------------EEEEESSSSCTTSSCHHHHTTSCEEEESSC--CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCC---------------CCEEEECCEEcccCCHHHHHhceEEECCCC--ccc
Confidence 799999999999999999999999996554 999999998765544445567789999999 666
Q ss_pred cCCCcccCHHHHHHH----HHHHHHHHHHhhcc----CCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCc
Q psy2946 188 GHLTPNANLELYQHC----VERLWKSVDERMNK----DSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE 259 (455)
Q Consensus 188 g~~sv~~n~~~~~~~----~~~l~~~~~~~~~~----~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DE 259 (455)
. .|+++|+.+.... ..+..+ ..++... ........-.+...|..+|+||+||++|||||..+|+|+|+||
T Consensus 1120 ~-~ti~eNi~~~~~~~~~~~~~i~~-~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDE 1197 (1284)
T 3g5u_A 1120 D-CSIAENIAYGDNSRVVSYEEIVR-AAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDE 1197 (1284)
T ss_dssp S-SBHHHHHTCCCSSCCCCHHHHHH-HHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEES
T ss_pred c-ccHHHHHhccCCCCCCCHHHHHH-HHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4 5999998653210 011111 1111111 0000111112233466778899999999999999999999999
Q ss_pred hh
Q psy2946 260 RL 261 (455)
Q Consensus 260 pl 261 (455)
|+
T Consensus 1198 pT 1199 (1284)
T 3g5u_A 1198 AT 1199 (1284)
T ss_dssp CS
T ss_pred Cc
Confidence 97
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.56 E-value=1.6e-15 Score=162.22 Aligned_cols=117 Identities=17% Similarity=0.073 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.+. ..++|++|++ .++
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---------------~G~I~~~-------------~~i~~v~Q~~--~~~ 429 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---------------EGKVEWD-------------LTVAYKPQYI--KAE 429 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCS---------------BSCCCCC-------------CCEEEECSSC--CCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------ceEEEEe-------------eEEEEEecCc--cCC
Confidence 589999999999999999999999997666 8888751 2367888887 445
Q ss_pred cCCCcccCHHHH-HHHH--HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELY-QHCV--ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~-~~~~--~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...|+.+++... .... ...+..+.+.++..... +.+...+|+||+||++||+||..+|.++|+|||+
T Consensus 430 ~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt 499 (607)
T 3bk7_A 430 YEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-------DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS 499 (607)
T ss_dssp CSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT-------TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred CCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHh-------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 667887776553 1111 12234444555443211 2334456779999999999999999999999996
No 50
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.54 E-value=9.7e-16 Score=142.47 Aligned_cols=114 Identities=17% Similarity=0.105 Sum_probs=70.9
Q ss_pred HHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCc
Q psy2946 103 AEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAP 182 (455)
Q Consensus 103 a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p 182 (455)
+++++.+|++++|+||||||||||+|+|+|+ .++ +|+|. +.... .........++|++|++
T Consensus 15 ~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---------------~G~I~--~~~~~-~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 15 YVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---------------SKQVS--RIILT-RPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHHHHHCSEEEEECCTTSSTTHHHHHHHHH-HHH---------------TTSCS--EEEEE-ECSCCTTCCCCSSCC--
T ss_pred HHHhccCCCEEEEECCCCCCHHHHHHHHhcC-CCc---------------CCeee--eEEec-CCchhhhcceEEecCCH
Confidence 4444468999999999999999999999999 887 78874 22111 11122345678888876
Q ss_pred eEEEecCCCcccCH-HHHHHHHHHHH-----HHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEe
Q psy2946 183 IVYNYGHLTPNANL-ELYQHCVERLW-----KSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVL 256 (455)
Q Consensus 183 ~~~~~g~~sv~~n~-~~~~~~~~~l~-----~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll 256 (455)
.+|+ .+......... +.+.+.+ +. +.||+||++|||||..+|.++|
T Consensus 76 ----------~enl~~~~~~~~~~~~~~~~~~~~~~~l-------------~~-----glGq~qrv~lAraL~~~p~lll 127 (208)
T 3b85_A 76 ----------NEKIDPYLRPLHDALRDMVEPEVIPKLM-------------EA-----GIVEVAPLAYMRGRTLNDAFVI 127 (208)
T ss_dssp --------------CTTTHHHHHHHTTTSCTTHHHHHH-------------HT-----TSEEEEEGGGGTTCCBCSEEEE
T ss_pred ----------HHHHHHHHHHHHHHHHHhccHHHHHHHH-------------Hh-----CCchHHHHHHHHHHhcCCCEEE
Confidence 2333 22110000000 0011111 11 1299999999999999999999
Q ss_pred cCchhhH
Q psy2946 257 DQERLYN 263 (455)
Q Consensus 257 ~DEpl~~ 263 (455)
+|||+..
T Consensus 128 LDEPts~ 134 (208)
T 3b85_A 128 LDEAQNT 134 (208)
T ss_dssp ECSGGGC
T ss_pred EeCCccc
Confidence 9999754
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.53 E-value=3.8e-15 Score=157.43 Aligned_cols=117 Identities=17% Similarity=0.093 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+|+|+|+..+. +|+|.+. ..++|++|++ ..+
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---------------~G~i~~~-------------~~i~~v~Q~~--~~~ 359 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---------------EGKIEWD-------------LTVAYKPQYI--KAD 359 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCS---------------BCCCCCC-------------CCEEEECSSC--CCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CeEEEEC-------------ceEEEEecCC--cCC
Confidence 589999999999999999999999997666 8888751 2367888887 445
Q ss_pred cCCCcccCHHHHHH-HH--HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQH-CV--ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~-~~--~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...|+.+++..... .. ...++.+.+.++... ..+.+...+|+||+||++||++|..+|.++|+|||+
T Consensus 360 ~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt 429 (538)
T 1yqt_A 360 YEGTVYELLSKIDASKLNSNFYKTELLKPLGIID-------LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS 429 (538)
T ss_dssp CSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGG-------GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred CCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChh-------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 66788776554311 11 111222222222211 123445567789999999999999999999999996
No 52
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.50 E-value=1.9e-15 Score=159.62 Aligned_cols=118 Identities=20% Similarity=0.204 Sum_probs=80.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+|.+.+.. +++++|.. ...
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---------------~G~i~~~~~~------------i~~~~q~~--~~~ 342 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEITAD---------------EGSVTPEKQI------------LSYKPQRI--FPN 342 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCS---------------BCCEESSCCC------------EEEECSSC--CCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CcEEEECCee------------eEeechhc--ccc
Confidence 589999999999999999999999997766 8888766542 33455554 223
Q ss_pred cCCCcccCHHHHHHHH----HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCV----ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~----~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...|+.+|+....... ....+.+.+.++... ..+.+...+|+||+||++|||||..+|.++|+|||+
T Consensus 343 ~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT 413 (538)
T 3ozx_A 343 YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHR-------LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS 413 (538)
T ss_dssp CSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGG-------CTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred cCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHH-------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 3557777765531100 111222222222221 123445567789999999999999999999999996
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.43 E-value=1.6e-14 Score=152.60 Aligned_cols=128 Identities=17% Similarity=0.024 Sum_probs=76.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcC---------CCCCeeecccccc--ccccCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV---------SVPGTIGALVIER--PATIEDG 176 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i---------~~~G~~~~~~~~~--~~~~~~~ 176 (455)
.+|++++|+||||||||||+|+|+|++.++ +|++ .+.|......... ......+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---------------~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 109 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPN---------------LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPV 109 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCC---------------TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhh
Confidence 589999999999999999999999997666 6664 2444432111000 0111233
Q ss_pred CcccCceEEEecC---CCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEE
Q psy2946 177 FSQLAPIVYNYGH---LTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNI 253 (455)
Q Consensus 177 ~~~q~p~~~~~g~---~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~ 253 (455)
+++|.. ..+.. .++.+++... . ....++.+.+.++..... +.+...+|+||+||++||+||..+|+
T Consensus 110 ~~~q~~--~~~~~~~~~~v~e~~~~~-~-~~~~~~~~l~~lgl~~~~-------~~~~~~LSgGekQRv~iAraL~~~P~ 178 (538)
T 1yqt_A 110 VKPQYV--DLIPKAVKGKVIELLKKA-D-ETGKLEEVVKALELENVL-------EREIQHLSGGELQRVAIAAALLRNAT 178 (538)
T ss_dssp EECSCG--GGSGGGCCSBHHHHHHHH-C-SSSCHHHHHHHTTCTTTT-------TSBGGGCCHHHHHHHHHHHHHHSCCS
T ss_pred hhhhhh--hhcchhhhccHHHHHhhh-h-HHHHHHHHHHHcCCChhh-------hCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 444432 11111 1344433210 0 011234445555443221 22344567799999999999999999
Q ss_pred EEecCchh
Q psy2946 254 LVLDQERL 261 (455)
Q Consensus 254 vll~DEpl 261 (455)
++|+|||+
T Consensus 179 lLlLDEPT 186 (538)
T 1yqt_A 179 FYFFDEPS 186 (538)
T ss_dssp EEEEESTT
T ss_pred EEEEECCc
Confidence 99999996
No 54
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.42 E-value=2.5e-14 Score=150.96 Aligned_cols=127 Identities=19% Similarity=0.059 Sum_probs=74.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCC-----------CCCeeecccccc------c
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVS-----------VPGTIGALVIER------P 170 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~-----------~~G~~~~~~~~~------~ 170 (455)
.+|++++|+||||||||||+|+|+|++.++ .|++. +.|......... .
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---------------~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 87 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPN---------------FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELK 87 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCC---------------TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCC---------------CCccccccchhhHHhhcCCeeHHHHHHHHhhcccc
Confidence 689999999999999999999999997766 77772 334322111000 0
Q ss_pred cccCCCCcccCceEEEecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCC
Q psy2946 171 ATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRV 250 (455)
Q Consensus 171 ~~~~~~~~~q~p~~~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~ 250 (455)
.....+++.+.+ .++. .++.+++... .....++.+.+.++..... |.+...+|+||+||++||+||..
T Consensus 88 ~~~~~~~~~~~~--~~~~-~~v~~~l~~~--~~~~~~~~~l~~l~l~~~~-------~~~~~~LSgGe~Qrv~iA~aL~~ 155 (538)
T 3ozx_A 88 IVHKIQYVEYAS--KFLK-GTVNEILTKI--DERGKKDEVKELLNMTNLW-------NKDANILSGGGLQRLLVAASLLR 155 (538)
T ss_dssp EEEECSCTTGGG--TTCC-SBHHHHHHHH--CCSSCHHHHHHHTTCGGGT-------TSBGGGCCHHHHHHHHHHHHHHS
T ss_pred hhhccchhhhhh--hhcc-CcHHHHhhcc--hhHHHHHHHHHHcCCchhh-------cCChhhCCHHHHHHHHHHHHHHc
Confidence 001122222222 1111 1232211110 0011233444444432211 23344567799999999999999
Q ss_pred CEEEEecCchh
Q psy2946 251 DNILVLDQERL 261 (455)
Q Consensus 251 ~~~vll~DEpl 261 (455)
+|+++|+|||+
T Consensus 156 ~p~illlDEPt 166 (538)
T 3ozx_A 156 EADVYIFDQPS 166 (538)
T ss_dssp CCSEEEEESTT
T ss_pred CCCEEEEECCc
Confidence 99999999996
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.8e-14 Score=152.43 Aligned_cols=131 Identities=15% Similarity=0.024 Sum_probs=72.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCC-----------CCCeeeccccccccccCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVS-----------VPGTIGALVIERPATIEDG 176 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~-----------~~G~~~~~~~~~~~~~~~~ 176 (455)
.+|++++|+||||||||||+|+|+|++.++ .|+|. +.|................
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---------------~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 165 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPN---------------LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIK 165 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCC---------------TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCC---------------CceEecccchhhhhheecChhhhhhhhHHHHHhhh
Confidence 689999999999999999999999997766 77773 2222111100000000010
Q ss_pred ------CcccCceEEEec-CCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcC
Q psy2946 177 ------FSQLAPIVYNYG-HLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLR 249 (455)
Q Consensus 177 ------~~~q~p~~~~~g-~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~ 249 (455)
+..+.+. .+.+ ..++.+++..........++.+.+.++.... .|.....+|+||+||++||+||.
T Consensus 166 ~~~~~~~~~~~~~-~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~-------~~~~~~~LSgGe~Qrv~iAraL~ 237 (608)
T 3j16_B 166 AIIKPQYVDNIPR-AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENV-------LKRDIEKLSGGELQRFAIGMSCV 237 (608)
T ss_dssp CEEECCCTTTHHH-HCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGG-------GGSCTTTCCHHHHHHHHHHHHHH
T ss_pred hhhchhhhhhhhh-hhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcch-------hCCChHHCCHHHHHHHHHHHHHH
Confidence 1001000 0000 0011111110000011234445555544321 13444566779999999999999
Q ss_pred CCEEEEecCchh
Q psy2946 250 VDNILVLDQERL 261 (455)
Q Consensus 250 ~~~~vll~DEpl 261 (455)
.+|.++|+|||+
T Consensus 238 ~~p~llllDEPt 249 (608)
T 3j16_B 238 QEADVYMFDEPS 249 (608)
T ss_dssp SCCSEEEEECTT
T ss_pred hCCCEEEEECcc
Confidence 999999999996
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.42 E-value=8.3e-14 Score=148.77 Aligned_cols=117 Identities=15% Similarity=0.038 Sum_probs=75.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|+..++ +|+.. . ...++|++|.. ...
T Consensus 376 ~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---------------~G~~~-~------------~~~i~~~~q~~--~~~ 425 (608)
T 3j16_B 376 SDSEILVMMGENGTGKTTLIKLLAGALKPD---------------EGQDI-P------------KLNVSMKPQKI--APK 425 (608)
T ss_dssp CTTCEEEEESCTTSSHHHHHHHHHTSSCCS---------------BCCCC-C------------SCCEEEECSSC--CCC
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCC---------------CCcCc-c------------CCcEEEecccc--ccc
Confidence 456999999999999999999999998766 55421 1 11245556654 222
Q ss_pred cCCCcccCHHHHHH---HHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQH---CVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~---~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
...++.+++..... ......+.+.+.++.... .+.+...+|+||+||++|||||+.+|.++|+|||+
T Consensus 426 ~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT 495 (608)
T 3j16_B 426 FPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI-------IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS 495 (608)
T ss_dssp CCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT-------SSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred CCccHHHHHHHHhhcccccHHHHHHHHHHcCChhh-------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 23356554322110 001223334444443321 13344566779999999999999999999999996
No 57
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.41 E-value=1.2e-14 Score=155.33 Aligned_cols=129 Identities=17% Similarity=0.072 Sum_probs=77.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcC---------CCCCeeecccccc--ccccCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV---------SVPGTIGALVIER--PATIEDG 176 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i---------~~~G~~~~~~~~~--~~~~~~~ 176 (455)
.+|++++|+||||||||||+|+|+|++.++ +|++ .+.|......... ......+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---------------~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~ 179 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPN---------------LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPV 179 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSCCC---------------TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCCCC---------------CCccccccchhhheeCCEehhhhhhhhhhhhcceE
Confidence 699999999999999999999999997766 6665 3445432111000 0111233
Q ss_pred CcccCceE--EEecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEE
Q psy2946 177 FSQLAPIV--YNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNIL 254 (455)
Q Consensus 177 ~~~q~p~~--~~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~v 254 (455)
+.+|.... ..+.. ++.+|+.... ....++.+.+.++.... .|.+...+|+||+||++||+||..+|++
T Consensus 180 ~~~q~~~~~~~~~~~-tv~e~l~~~~--~~~~~~~~L~~lgL~~~-------~~~~~~~LSGGekQRvaIAraL~~~P~l 249 (607)
T 3bk7_A 180 VKPQYVDLLPKAVKG-KVRELLKKVD--EVGKFEEVVKELELENV-------LDRELHQLSGGELQRVAIAAALLRKAHF 249 (607)
T ss_dssp EECSCGGGGGGTCCS-BHHHHHHHTC--CSSCHHHHHHHTTCTTG-------GGSBGGGCCHHHHHHHHHHHHHHSCCSE
T ss_pred Eeechhhhchhhccc-cHHHHhhhhH--HHHHHHHHHHHcCCCch-------hCCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 34443200 11111 4555443200 01123344445443221 1233445677999999999999999999
Q ss_pred EecCchh
Q psy2946 255 VLDQERL 261 (455)
Q Consensus 255 ll~DEpl 261 (455)
+|+|||+
T Consensus 250 LlLDEPT 256 (607)
T 3bk7_A 250 YFFDEPS 256 (607)
T ss_dssp EEEECTT
T ss_pred EEEECCc
Confidence 9999995
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.33 E-value=5.7e-15 Score=163.83 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=28.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
.+|++++|+||||||||||+|+|+|+..++
T Consensus 697 ~~GeivaIiGpNGSGKSTLLklLaGll~P~ 726 (986)
T 2iw3_A 697 SLSSRIAVIGPNGAGKSTLINVLTGELLPT 726 (986)
T ss_dssp ETTCEEEECSCCCHHHHHHHHHHTTSSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 699999999999999999999999998766
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.30 E-value=3.1e-13 Score=146.73 Aligned_cols=33 Identities=12% Similarity=-0.057 Sum_probs=28.5
Q ss_pred cCCCccCCcHHHHHHHHHHcCCCEE--EEecCchh
Q psy2946 229 TCGWIKGDGFKCLMACAKSLRVDNI--LVLDQERL 261 (455)
Q Consensus 229 t~g~~~s~G~~q~~~ia~al~~~~~--vll~DEpl 261 (455)
.+...+|+||+||++|||||..+|. ++|+|||+
T Consensus 198 ~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPt 232 (670)
T 3ux8_A 198 RSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPS 232 (670)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTT
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCc
Confidence 3445667799999999999998887 99999995
No 60
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.29 E-value=8.9e-14 Score=137.10 Aligned_cols=114 Identities=12% Similarity=0.040 Sum_probs=68.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEE
Q psy2946 107 SKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYN 186 (455)
Q Consensus 107 ~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~ 186 (455)
..+|++++|+|+||||||||+++|+|++.+. .|. ..+++++|++ ++
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---------------~G~-----------------~~v~~v~qd~--~~ 132 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW---------------DHH-----------------PRVDLVTTDG--FL 132 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---------------TTC-----------------CCEEEEEGGG--GB
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc---------------CCC-----------------CeEEEEecCc--cC
Confidence 4789999999999999999999999998765 221 0123334443 33
Q ss_pred ecCCCcccCHHHHH------HHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 187 YGHLTPNANLELYQ------HCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 187 ~g~~sv~~n~~~~~------~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
++. ++.+|+.++. ......+....+.+... . ....+ ...|+|++||+++|+++..+|.|+|+|||
T Consensus 133 ~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~-~--~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep 203 (312)
T 3aez_A 133 YPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVKSG-S--DYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGL 203 (312)
T ss_dssp CCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTT-C--SCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECT
T ss_pred Ccc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCC-c--ccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCc
Confidence 333 3333322210 00011222233333311 1 11111 23455999999999999999999999999
Q ss_pred hhH
Q psy2946 261 LYN 263 (455)
Q Consensus 261 l~~ 263 (455)
+.-
T Consensus 204 ~~~ 206 (312)
T 3aez_A 204 NVL 206 (312)
T ss_dssp TTT
T ss_pred ccc
Confidence 753
No 61
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.26 E-value=7.7e-14 Score=134.81 Aligned_cols=110 Identities=15% Similarity=0.024 Sum_probs=62.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCC
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLT 191 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~s 191 (455)
.++|+||||||||||+|+|+|+..+. +|++.++|.... ........++++|.+ .++..+|
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---------------~G~i~~~g~~i~---~~~~~~~i~~v~q~~--~~~~~lt 63 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---------------KASSWNREEKIP---KTVEIKAIGHVIEEG--GVKMKLT 63 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------------------CC---CCCSCCEEEESCC------CCEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---------------CCccccCCcccC---cceeeeeeEEEeecC--CCcCCce
Confidence 58999999999999999999998776 889988886432 122234567888887 6777888
Q ss_pred cccCHHHHHHH--------HHHH-HHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCch
Q psy2946 192 PNANLELYQHC--------VERL-WKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 192 v~~n~~~~~~~--------~~~l-~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEp 260 (455)
+.+|+.+.... +... ...+..... .. +|+|++||+++||+++. ++++|||
T Consensus 64 v~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~----~~------------LS~G~~qrv~iaRal~~---lllldep 122 (270)
T 3sop_A 64 VIDTPGFGDQINNENCWEPIEKYINEQYEKFLK----EE------------VNIARKKRIPDTRVHCC---LYFISPT 122 (270)
T ss_dssp EECCCC--CCSBCTTCSHHHHHHHHHHHHHHHH----HH------------SCTTCCSSCCCCSCCEE---EEEECCC
T ss_pred EEechhhhhhcccHHHHHHHHHHHHHHHHhhhH----Hh------------cCcccchhhhhheeeee---eEEEecC
Confidence 99988775321 1111 111111111 11 23499999999998764 8888876
No 62
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.20 E-value=2.6e-11 Score=108.73 Aligned_cols=29 Identities=17% Similarity=-0.038 Sum_probs=26.8
Q ss_pred CCcHHHHHHHHHHcCCCEEEEecCchhhH
Q psy2946 235 GDGFKCLMACAKSLRVDNILVLDQERLYN 263 (455)
Q Consensus 235 s~G~~q~~~ia~al~~~~~vll~DEpl~~ 263 (455)
++|++||++||+++..+|.++++|||+..
T Consensus 85 s~g~~qrv~iAral~~~p~~lllDEPt~~ 113 (171)
T 4gp7_A 85 ESARKPLIEMAKDYHCFPVAVVFNLPEKV 113 (171)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCCHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEeCCHHH
Confidence 56999999999999999999999999754
No 63
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.16 E-value=2.3e-12 Score=131.39 Aligned_cols=118 Identities=13% Similarity=-0.030 Sum_probs=76.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
..+.+++|+|+||||||||+|+|+|+..++ +|+|.++|.... ..++++|.+ .+
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~---------------~GsI~~~g~~~t---------~~~~v~q~~---~~ 119 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEE---------------EGAAKTGVVEVT---------MERHPYKHP---NI 119 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTS---------------TTSCCCCC-------------CCCEEEECS---SC
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcc---------------CceEEECCeecc---------eeEEecccc---cc
Confidence 345599999999999999999999997665 899998886421 125566655 34
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCC----------CEEEEec
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRV----------DNILVLD 257 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~----------~~~vll~ 257 (455)
..+++.|++.+... ....+.+.+.++.... . ..+..++ +.|++||+.||+++.. +++++++
T Consensus 120 ~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~~---~-~~~~lS~---G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllL 190 (413)
T 1tq4_A 120 PNVVFWDLPGIGST--NFPPDTYLEKMKFYEY---D-FFIIISA---TRFKKNDIDIAKAISMMKKEFYFVRTKVDSDIT 190 (413)
T ss_dssp TTEEEEECCCGGGS--SCCHHHHHHHTTGGGC---S-EEEEEES---SCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHH
T ss_pred CCeeehHhhcccch--HHHHHHHHHHcCCCcc---C-CeEEeCC---CCccHHHHHHHHHHHhcCCCeEEEEecCccccc
Confidence 55677777655321 1123344444433221 1 1111222 1139999999999998 8888889
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
|||+
T Consensus 191 DEPt 194 (413)
T 1tq4_A 191 NEAD 194 (413)
T ss_dssp HHHT
T ss_pred Cccc
Confidence 9985
No 64
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.15 E-value=1.3e-12 Score=128.03 Aligned_cols=46 Identities=26% Similarity=0.473 Sum_probs=38.9
Q ss_pred chhhhHHHHHHHHHHHHHHhc----cCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 86 MNYYMNVHIILEKQRSEAEQQ----SKRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 86 ml~~~nl~~~~~~~r~~a~~~----~~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
++++.|+++.|. ..++++ +++|++++|+||||||||||+++|+|++
T Consensus 101 ~i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 101 FFNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 578889999886 234444 3899999999999999999999999996
No 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.12 E-value=2.5e-11 Score=134.78 Aligned_cols=118 Identities=18% Similarity=0.059 Sum_probs=71.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+||||||||||+|+|+|- ++ .|.... .. ...+|++|++. .++
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~LagG---------------------~i--~g~~~~----~~--~~~~~v~q~~~-~~~ 508 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIANG---------------------QV--DGFPTQ----EE--CRTVYVEHDID-GTH 508 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHT---------------------CS--TTCCCT----TT--SCEEETTCCCC-CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC---------------------Cc--CCCccc----cc--eeEEEEccccc-ccc
Confidence 58999999999999999999999951 11 111000 00 11245555421 345
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
..+|+.+|+.+...........+.+.++.... ..+.+...+|+||+||++|||+|..+|.++|+|||+
T Consensus 509 ~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~------~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPT 576 (986)
T 2iw3_A 509 SDTSVLDFVFESGVGTKEAIKDKLIEFGFTDE------MIAMPISALSGGWKMKLALARAVLRNADILLLDEPT 576 (986)
T ss_dssp TTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHH------HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred cCCcHHHHHHHhhcCHHHHHHHHHHHcCCChh------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 66777777653000002223334444433100 012233345669999999999999999999999996
No 66
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.10 E-value=1.6e-11 Score=111.02 Aligned_cols=31 Identities=3% Similarity=-0.139 Sum_probs=26.6
Q ss_pred CccCCcHHHHHHHHHH-----cCCCEEEEecCc--hhh
Q psy2946 232 WIKGDGFKCLMACAKS-----LRVDNILVLDQE--RLY 262 (455)
Q Consensus 232 ~~~s~G~~q~~~ia~a-----l~~~~~vll~DE--pl~ 262 (455)
..+|+||+||+++|++ +..+|.++|+|| |+.
T Consensus 75 ~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~ 112 (178)
T 1ye8_A 75 VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKME 112 (178)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG
T ss_pred cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcc
Confidence 3455699999999996 999999999999 863
No 67
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.07 E-value=1e-10 Score=103.73 Aligned_cols=84 Identities=21% Similarity=0.125 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeec
Q psy2946 89 YMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGA 164 (455)
Q Consensus 89 ~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~ 164 (455)
..|+++.|++ ..+++++ .+|++++|+||||||||||+|+|+|.+ +. +|+|.++|....
T Consensus 10 ~~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---------------~G~V~~~g~~i~ 71 (158)
T 1htw_A 10 DEFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---------------QGNVKSPTYTLV 71 (158)
T ss_dssp SHHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---------------CSCCCCCTTTCE
T ss_pred CHHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---------------CCeEEECCEeee
Confidence 3678888875 3344442 899999999999999999999999997 66 899999997543
Q ss_pred cccccccccCCCCcccCceEEEecCCCcccCHHH
Q psy2946 165 LVIERPATIEDGFSQLAPIVYNYGHLTPNANLEL 198 (455)
Q Consensus 165 ~~~~~~~~~~~~~~~q~p~~~~~g~~sv~~n~~~ 198 (455)
... .. ..+++|.+ .+| .+++.+|+.+
T Consensus 72 ~~~--~~---~~~~~q~~--~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 72 EEY--NI---AGKMIYHF--DLY-RLADPEELEF 97 (158)
T ss_dssp EEE--EE---TTEEEEEE--ECT-TCSCTTHHHH
T ss_pred eec--cC---CCcceecc--ccc-cCCcHHHHHH
Confidence 211 11 12677766 567 7899888754
No 68
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.04 E-value=2.9e-11 Score=118.53 Aligned_cols=123 Identities=15% Similarity=0.064 Sum_probs=75.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc-cccCCCCcccCceEE-
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP-ATIEDGFSQLAPIVY- 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~-~~~~~~~~~q~p~~~- 185 (455)
.+|++++|+|+|||||||+++.|+|++.+. ++++.+.+.|+..-. . ....... .+..+++++|.+ .
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~-----a--~~ql~~~~~~~~i~~v~q~~--~~ 165 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAA-----A--SDQLEIWAERTGCEIVVAEG--DK 165 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHH-----H--HHHHHHHHHHHTCEEECCC----C
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchh-----H--HHHHHHHHHhcCceEEEecC--Cc
Confidence 578999999999999999999999999888 555555544432100 0 0000000 012456777766 4
Q ss_pred EecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCc------HHHHHHHHHHcCCCEE--EEec
Q psy2946 186 NYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDG------FKCLMACAKSLRVDNI--LVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G------~~q~~~ia~al~~~~~--vll~ 257 (455)
+++..++.+|+.+.. .. . ....++|+.|...-.. .+||+.|+|++..+|. ++++
T Consensus 166 ~~~~~~v~e~l~~~~-----------~~-~------~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 166 AKAATVLSKAVKRGK-----------EE-G------YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp CCHHHHHHHHHHHHH-----------HT-T------CSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEE
T ss_pred cCHHHHHHHHHHHHH-----------Hc-C------CcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEE
Confidence 455445555544321 00 0 1135678777532110 1789999999998888 9999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
| |+
T Consensus 228 D-pt 230 (302)
T 3b9q_A 228 D-GN 230 (302)
T ss_dssp E-GG
T ss_pred e-CC
Confidence 9 86
No 69
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.03 E-value=5.7e-11 Score=128.91 Aligned_cols=33 Identities=15% Similarity=-0.019 Sum_probs=27.7
Q ss_pred cCCCccCCcHHHHHHHHHHcCCCE---EEEecCchh
Q psy2946 229 TCGWIKGDGFKCLMACAKSLRVDN---ILVLDQERL 261 (455)
Q Consensus 229 t~g~~~s~G~~q~~~ia~al~~~~---~vll~DEpl 261 (455)
.+...+|+||+||++|||||..+| .++|+|||+
T Consensus 539 ~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt 574 (670)
T 3ux8_A 539 QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT 574 (670)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTT
T ss_pred CCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCC
Confidence 345566779999999999998765 799999997
No 70
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.99 E-value=8.4e-11 Score=117.71 Aligned_cols=123 Identities=15% Similarity=0.078 Sum_probs=76.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccccc-ccccCCCCcccCceEE-
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER-PATIEDGFSQLAPIVY- 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~-~~~~~~~~~~q~p~~~- 185 (455)
.+|++++|+|+|||||||+++.|+|++.+. ++++.+.+.|+.... . ...... ..+..+++++|.+ .
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~-----a--~eql~~~~~r~~i~~v~q~~--~~ 222 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAA-----A--SDQLEIWAERTGCEIVVAEG--DK 222 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHH-----H--HHHHHHHHHHHTCEEECCSS--SS
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccc-----h--hHHHHHHHHhcCeEEEEecc--cc
Confidence 578999999999999999999999999888 555555555432100 0 000000 0122356666665 3
Q ss_pred EecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCc------HHHHHHHHHHcCCCEE--EEec
Q psy2946 186 NYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDG------FKCLMACAKSLRVDNI--LVLD 257 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G------~~q~~~ia~al~~~~~--vll~ 257 (455)
+++..++.+|+.+.. .. .....++|+.|...-.. .+||+.|+|++..+|. ++++
T Consensus 223 ~~p~~tv~e~l~~~~-----------~~-------~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvL 284 (359)
T 2og2_A 223 AKAATVLSKAVKRGK-----------EE-------GYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVL 284 (359)
T ss_dssp CCHHHHHHHHHHHHH-----------HT-------TCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEE
T ss_pred cChhhhHHHHHHHHH-----------hC-------CCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 344444555443321 00 01236788887532110 2789999999998888 9999
Q ss_pred Cchh
Q psy2946 258 QERL 261 (455)
Q Consensus 258 DEpl 261 (455)
| |+
T Consensus 285 D-pt 287 (359)
T 2og2_A 285 D-GN 287 (359)
T ss_dssp E-GG
T ss_pred c-CC
Confidence 9 86
No 71
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.96 E-value=1.8e-10 Score=117.52 Aligned_cols=28 Identities=18% Similarity=-0.072 Sum_probs=26.4
Q ss_pred cCCcHHHHHHHHHHcCCCE--EEEecCchh
Q psy2946 234 KGDGFKCLMACAKSLRVDN--ILVLDQERL 261 (455)
Q Consensus 234 ~s~G~~q~~~ia~al~~~~--~vll~DEpl 261 (455)
.|+||+||++||+++..++ .++|+|||+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt 325 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVD 325 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 5889999999999999999 999999996
No 72
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.96 E-value=1.5e-12 Score=121.63 Aligned_cols=27 Identities=41% Similarity=0.421 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+|++++|+||||||||||+++|+|+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999999999974
No 73
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.94 E-value=2.2e-10 Score=113.65 Aligned_cols=86 Identities=14% Similarity=0.132 Sum_probs=62.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|+.++|+|+||||||||+++|+|+..+. +|.|++.|...... .. ..+.. .++
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---------------~g~i~i~~~~e~~~-----~~-----~~~~i-~~~ 222 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---------------ERIISIEDTEEIVF-----KH-----HKNYT-QLF 222 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTT---------------SCEEEEESSCCCCC-----SS-----CSSEE-EEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCC---------------CcEEEECCeecccc-----cc-----chhEE-EEE
Confidence 578999999999999999999999996555 77777766531100 00 00111 111
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhhHHH
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNEL 265 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~~~l 265 (455)
. ++|++|+++|++||..+|+++++|||...+.
T Consensus 223 ~----------------------------------------------ggg~~~r~~la~aL~~~p~ilildE~~~~e~ 254 (330)
T 2pt7_A 223 F----------------------------------------------GGNITSADCLKSCLRMRPDRIILGELRSSEA 254 (330)
T ss_dssp C----------------------------------------------BTTBCHHHHHHHHTTSCCSEEEECCCCSTHH
T ss_pred e----------------------------------------------CCChhHHHHHHHHhhhCCCEEEEcCCChHHH
Confidence 1 0389999999999999999999999975443
No 74
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.93 E-value=3.7e-10 Score=110.71 Aligned_cols=122 Identities=16% Similarity=0.100 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccc-cccCCCCcccCceEEEe
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP-ATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~-~~~~~~~~~q~p~~~~~ 187 (455)
+|++++|+||||||||||++.|++++.+. ++++.+.+.|+.... .. ...... .+...++++|.+ ..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~-----a~--~ql~~~~~~~~i~~v~q~~--~~~ 168 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAA-----GG--TQLSEWGKRLSIPVIQGPE--GTD 168 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTT-----TT--HHHHHHHHHHTCCEECCCT--TCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChh-----HH--HHHHHHHHhcCceEEEeCC--CCC
Confidence 68899999999999999999999999988 777777777754310 00 000000 112356677665 333
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCcc------CCcHHHHHHHHHHcCCCEE--EEecCc
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIK------GDGFKCLMACAKSLRVDNI--LVLDQE 259 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~------s~G~~q~~~ia~al~~~~~--vll~DE 259 (455)
+..++.+|+.+. ... ...-.++||.|... +...+||+++||++..+|. ++.+|.
T Consensus 169 p~~~v~~~v~~~----------~~~--------~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa 230 (304)
T 1rj9_A 169 SAALAYDAVQAM----------KAR--------GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDA 230 (304)
T ss_dssp HHHHHHHHHHHH----------HHH--------TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEET
T ss_pred HHHHHHHHHHHH----------HhC--------CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcH
Confidence 333333333221 000 11235788888542 2346789999999998876 555664
Q ss_pred h
Q psy2946 260 R 260 (455)
Q Consensus 260 p 260 (455)
.
T Consensus 231 ~ 231 (304)
T 1rj9_A 231 V 231 (304)
T ss_dssp T
T ss_pred H
Confidence 3
No 75
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.81 E-value=3.7e-09 Score=104.63 Aligned_cols=145 Identities=13% Similarity=0.110 Sum_probs=85.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCC--CcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDG--FSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~--~~~q~p~~~ 185 (455)
.+|++++|+|||||||||+++.|++++.+. ++++.+.+.|+.... .. .. ...+....+ +++|.. .
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~-----a~--eq-l~~~~~~~gv~~v~q~~--~ 193 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAG-----AI--EQ-LEEHAKRIGVKVIKHSY--G 193 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTT-----HH--HH-HHHHHHHTTCEEECCCT--T
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccc-----hH--HH-HHHHHHHcCceEEeccc--c
Confidence 478999999999999999999999999998 777777777764311 00 00 000111122 333433 2
Q ss_pred EecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCcc--CCcHHHHHHHHHHcCCCEEEEecCchhhH
Q psy2946 186 NYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIK--GDGFKCLMACAKSLRVDNILVLDQERLYN 263 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~--s~G~~q~~~ia~al~~~~~vll~DEpl~~ 263 (455)
.++..++.+|+.+.. .. ....+++|+.|... ..-++++..+++++.++..++++|.....
T Consensus 194 ~~p~~~v~e~l~~~~----------~~--------~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~ 255 (328)
T 3e70_C 194 ADPAAVAYDAIQHAK----------AR--------GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN 255 (328)
T ss_dssp CCHHHHHHHHHHHHH----------HH--------TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT
T ss_pred CCHHHHHHHHHHHHH----------hc--------cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH
Confidence 333333444333211 00 12246789988643 22356667799999999999999976544
Q ss_pred HHHhh---CC--CceEEEEeCCCCC
Q psy2946 264 ELIRE---LP--KSYDVVLLPKSGG 283 (455)
Q Consensus 264 ~l~~~---l~--~~~~v~~l~~s~g 283 (455)
++... +. .++.++.+.|..+
T Consensus 256 ~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 256 AIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp HHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 33322 11 2344555555444
No 76
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.75 E-value=1.6e-09 Score=120.18 Aligned_cols=33 Identities=18% Similarity=0.034 Sum_probs=28.0
Q ss_pred cCCCccCCcHHHHHHHHHHcCCC---EEEEecCchh
Q psy2946 229 TCGWIKGDGFKCLMACAKSLRVD---NILVLDQERL 261 (455)
Q Consensus 229 t~g~~~s~G~~q~~~ia~al~~~---~~vll~DEpl 261 (455)
.+...+|+||+||++|||+|..+ |.++|+|||+
T Consensus 801 q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPT 836 (916)
T 3pih_A 801 QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPT 836 (916)
T ss_dssp CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTT
T ss_pred CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCC
Confidence 45556777999999999999865 4899999997
No 77
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.70 E-value=1.3e-08 Score=112.88 Aligned_cols=33 Identities=12% Similarity=-0.039 Sum_probs=28.2
Q ss_pred cCCCccCCcHHHHHHHHHHcCCCE---EEEecCchh
Q psy2946 229 TCGWIKGDGFKCLMACAKSLRVDN---ILVLDQERL 261 (455)
Q Consensus 229 t~g~~~s~G~~q~~~ia~al~~~~---~vll~DEpl 261 (455)
.+...+|+||+||++||++|..+| .++|+|||+
T Consensus 859 ~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT 894 (993)
T 2ygr_A 859 QPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPT 894 (993)
T ss_dssp CCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTT
T ss_pred CccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence 345567779999999999999764 999999996
No 78
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.70 E-value=5.9e-09 Score=115.17 Aligned_cols=33 Identities=15% Similarity=-0.025 Sum_probs=28.3
Q ss_pred cCCCccCCcHHHHHHHHHHcCCC---EEEEecCchh
Q psy2946 229 TCGWIKGDGFKCLMACAKSLRVD---NILVLDQERL 261 (455)
Q Consensus 229 t~g~~~s~G~~q~~~ia~al~~~---~~vll~DEpl 261 (455)
.+...+|+||+||++||++|..+ |.++|+|||+
T Consensus 841 ~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT 876 (972)
T 2r6f_A 841 QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT 876 (972)
T ss_dssp CCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTT
T ss_pred CchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence 44556777999999999999976 4999999996
No 79
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.70 E-value=1.1e-09 Score=120.31 Aligned_cols=33 Identities=15% Similarity=-0.014 Sum_probs=28.8
Q ss_pred cCCCccCCcHHHHHHHHHHcCCC---EEEEecCchh
Q psy2946 229 TCGWIKGDGFKCLMACAKSLRVD---NILVLDQERL 261 (455)
Q Consensus 229 t~g~~~s~G~~q~~~ia~al~~~---~~vll~DEpl 261 (455)
.+...+|+|++||++||++|..+ |.++|+|||+
T Consensus 726 ~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT 761 (842)
T 2vf7_A 726 QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPT 761 (842)
T ss_dssp CCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTT
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence 44556778999999999999996 7999999996
No 80
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.69 E-value=7e-09 Score=111.08 Aligned_cols=76 Identities=18% Similarity=0.115 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeecccc---ccccccCCCCcccCceEE
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI---ERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~---~~~~~~~~~~~~q~p~~~ 185 (455)
.=+.++|+|+||||||||+++|+|+..|. ++|.|++.|....... ...++..++|++|++ .
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~~P~--------------~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~--~ 107 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVALPR--------------GSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEI--E 107 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC---------------------CCCSCEEEEEEECSSSSCCEEEESCC---C--C
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCCCCC--------------CCCeEEEcCEEEEEecCCccccceeEEeeecccc--c
Confidence 34679999999999999999999986551 3899999998642211 123455678999988 6
Q ss_pred EecCCCcccCHHHHH
Q psy2946 186 NYGHLTPNANLELYQ 200 (455)
Q Consensus 186 ~~g~~sv~~n~~~~~ 200 (455)
++...++.+|+.+..
T Consensus 108 l~~~~tv~e~i~~~~ 122 (608)
T 3szr_A 108 ISDASEVEKEINKAQ 122 (608)
T ss_dssp CCCHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 777888989887643
No 81
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.67 E-value=7.4e-10 Score=105.02 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=25.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+|.+++|+||||||||||+++|++++
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999999975
No 82
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.67 E-value=7.1e-09 Score=107.17 Aligned_cols=122 Identities=13% Similarity=0.089 Sum_probs=70.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNY 187 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~ 187 (455)
.+|++++|+|+||||||||+++|+|++.+. ++++.+.+.|+.... .. ........+..++|++|.. .++
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~a-----a~-eQL~~~~~r~~I~vV~Q~~--~~~ 359 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAA-----AV-EQLQVWGQRNNIPVIAQHT--GAD 359 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHH-----HH-HHHHHHHHHHTCCEECCST--TCC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchh-----hH-HHHHHHHHhcCceEEeccc--CcC
Confidence 678999999999999999999999999888 666666555543210 00 0000000123456666655 333
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCC-----cHHHHHHHHHHcC---CCEEEEecC
Q psy2946 188 GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGD-----GFKCLMACAKSLR---VDNILVLDQ 258 (455)
Q Consensus 188 g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~-----G~~q~~~ia~al~---~~~~vll~D 258 (455)
...++.+|+.+.. . ....-+++||.|..... -.++++.+++++. ++..++++|
T Consensus 360 p~~tV~e~l~~a~-----------~-------~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 360 SASVIFDAIQAAK-----------A-------RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHHHH-----------H-------TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHHHH-----------h-------cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 3334444433311 0 11235789999874321 2345667777664 444566666
No 83
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.65 E-value=1.2e-09 Score=99.77 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeee
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIG 163 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~ 163 (455)
|++++|+|+||||||||+++|+|++. + +| +.++|...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---------------~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---------------SG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---------------TT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---------------CC-EEEcCEec
Confidence 68999999999999999999999987 6 67 77777543
No 84
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.60 E-value=1e-08 Score=98.25 Aligned_cols=29 Identities=24% Similarity=0.521 Sum_probs=27.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVR 136 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~ 136 (455)
.+|++++|+||||||||||+++|+|+..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 68999999999999999999999999765
No 85
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.60 E-value=1e-08 Score=94.50 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+|++++|+||||||||||+|+|+|+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999999999985
No 86
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.60 E-value=6.1e-08 Score=96.96 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=27.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
.+|..++|+||||||||||+++|+|++.+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 467799999999999999999999998765
No 87
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.59 E-value=6.5e-08 Score=96.14 Aligned_cols=85 Identities=15% Similarity=0.071 Sum_probs=61.6
Q ss_pred cchhhhHHHHHHHHHHHHHHhc----cCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQ----SKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~----~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
.+++..|+++.|+.. .++++ ..+|++++|+|+||||||||+++|+|++.+. +.++.++..|+..-.. .|
T Consensus 28 ~~ie~~~~~~~~~~~--~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~--~~ 100 (337)
T 2qm8_A 28 TLAESRRADHRAAVR--DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRT--GG 100 (337)
T ss_dssp HHHTCSSHHHHHHHH--HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSS--CC
T ss_pred HHHeeCCcccccChH--HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCccccc--cc
Confidence 367888899988652 23332 3789999999999999999999999999988 7888888888754211 11
Q ss_pred eeeccccccccccCCCCcccCc
Q psy2946 161 TIGALVIERPATIEDGFSQLAP 182 (455)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~q~p 182 (455)
.+ ......+++++|.+
T Consensus 101 ~~------~~~~~~i~~v~q~~ 116 (337)
T 2qm8_A 101 SI------LGDKTRMARLAIDR 116 (337)
T ss_dssp CS------SCCGGGSTTGGGCT
T ss_pred ch------HHHhhhheeeccCc
Confidence 11 01233478888887
No 88
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.59 E-value=2.8e-08 Score=98.03 Aligned_cols=31 Identities=16% Similarity=-0.028 Sum_probs=26.6
Q ss_pred CCccCCcHHHHHHHHHHcC----CCEEEEecCchh
Q psy2946 231 GWIKGDGFKCLMACAKSLR----VDNILVLDQERL 261 (455)
Q Consensus 231 g~~~s~G~~q~~~ia~al~----~~~~vll~DEpl 261 (455)
...+|+||+|+++||++|+ .+|.++|+|||+
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~ 251 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVD 251 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCC
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 3456889999999999996 578899999996
No 89
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.53 E-value=5.9e-09 Score=106.49 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=42.5
Q ss_pred chhhhHHHHHHHHHHHHHHhc--cCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEec
Q psy2946 86 MNYYMNVHIILEKQRSEAEQQ--SKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDL 149 (455)
Q Consensus 86 ml~~~nl~~~~~~~r~~a~~~--~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDl 149 (455)
.+++.++.+.++.. .++++ ..+|++++|+||||||||||+++|+|++.+. .+++.+++-
T Consensus 143 ~~~l~~Lg~~~~~~--~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed 203 (418)
T 1p9r_A 143 RLDLHSLGMTAHNH--DNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVED 203 (418)
T ss_dssp CCCGGGSCCCHHHH--HHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEES
T ss_pred CCCHHHcCCCHHHH--HHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecc
Confidence 46667777666542 12222 2688899999999999999999999998776 555555543
No 90
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.49 E-value=2e-09 Score=96.57 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=25.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
++++|+|++|||||||++.|++++.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 689999999999999999999998876
No 91
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.48 E-value=3.4e-08 Score=98.60 Aligned_cols=113 Identities=13% Similarity=-0.004 Sum_probs=61.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh-cCCCCCCccEEEecCCCCCcCCCC-CeeeccccccccccCCCCcccCceEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV-RMPGLNRKPIFVDLDVGQGHVSVP-GTIGALVIERPATIEDGFSQLAPIVY 185 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~-~~~~~~~~~~~vDlDpgqG~i~~~-G~~~~~~~~~~~~~~~~~~~q~p~~~ 185 (455)
.+|++++|+|+||||||||+++|+|... +. .|+|... |.-.. .......++++|.. .
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---------------~G~I~~~~G~g~~----tt~~~~i~~v~q~~--~ 271 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---------------TNDVSNVSGLGQH----TTTAARLYHFPHGG--D 271 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---------------CC-----------------CCCEEEECTTSC--E
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccccccc---------------cCCccccCCCCcc----ceEEEEEEEECCCC--E
Confidence 4789999999999999999999999865 44 7777664 43211 11223356677776 5
Q ss_pred EecCCCcccCHHHH--HHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcC
Q psy2946 186 NYGHLTPNANLELY--QHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLR 249 (455)
Q Consensus 186 ~~g~~sv~~n~~~~--~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~ 249 (455)
++...++.++.... .......+.++.+.++... . .|.....++ |++||+++++++.
T Consensus 272 l~dtpgv~e~~l~~l~~~e~~~~~~e~l~~~gl~~---f----~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 272 VIDSPGVREFGLWHLEPEQITQGFVEFHDYLGHCK---Y----RDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp EEECHHHHTCCCCCCCHHHHHHTSGGGGGGTTCSS---S----TTCCSSSCT-TCHHHHHHHHTSS
T ss_pred ecCcccHHHhhhcCCCHHHHHHHHHHHHHHcCCch---h----cCCCcccCC-HHHHHHHHHhcCC
Confidence 66665665542110 0011111112222222111 1 123333455 9999999999973
No 92
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.47 E-value=4.3e-09 Score=103.06 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHH-HhcC
Q psy2946 91 NVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNY-AVRM 137 (455)
Q Consensus 91 nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~-~~~~ 137 (455)
|+++.|++ ..++++. .=.++|+|+||+|||||++.|+|. ..+.
T Consensus 3 ~l~~~~~~--~~~l~~~--~~~I~lvG~nG~GKSTLl~~L~g~~~~~~ 46 (301)
T 2qnr_A 3 NLPNQVHR--KSVKKGF--EFTLMVVGESGLGKSTLINSLFLTDLYPE 46 (301)
T ss_dssp -------------------CEEEEEEEETTSSHHHHHHHHHC------
T ss_pred CCcceECC--EEEEcCC--CEEEEEECCCCCCHHHHHHHHhCCCccCC
Confidence 56666654 3333331 235799999999999999999987 4444
No 93
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.46 E-value=1.8e-08 Score=91.09 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.+|++++|+|+||||||||+|+|++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999999986
No 94
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.46 E-value=1.9e-08 Score=94.69 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=29.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh-cCCCCCCccEEEec
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV-RMPGLNRKPIFVDL 149 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~-~~~~~~~~~~~vDl 149 (455)
++|++++|+||||||||||+++|++... .. +..+.+++.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~---~~~~~~~~~ 67 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTL 67 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHH---CCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCeEEEEEc
Confidence 6999999999999999999999994333 22 344555543
No 95
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.46 E-value=2.3e-07 Score=101.42 Aligned_cols=86 Identities=21% Similarity=0.159 Sum_probs=58.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHh-cCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEec
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAV-RMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYG 188 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~-~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g 188 (455)
|++++|+||||||||||+|+|+|+.. +. .|.+.+. . ....++++| +|.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~---------------~G~~vpa-~----------~~~i~~v~~-----i~~ 624 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQ---------------VGSFVPA-E----------EAHLPLFDG-----IYT 624 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHT---------------TTCCBSS-S----------EEEECCCSE-----EEE
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcc---------------cCceeeh-h----------ccceeeHHH-----hhc
Confidence 89999999999999999999999874 44 4544211 0 112344433 455
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHc--CCCEEEEecCch
Q psy2946 189 HLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSL--RVDNILVLDQER 260 (455)
Q Consensus 189 ~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al--~~~~~vll~DEp 260 (455)
.+++.+|+.. .. +.|+.+++.+++++ +.+|.++|+|||
T Consensus 625 ~~~~~d~l~~----------------------g~------------S~~~~e~~~la~il~~a~~p~LlLLDEp 664 (765)
T 1ewq_A 625 RIGASDDLAG----------------------GK------------STFMVEMEEVALILKEATENSLVLLDEV 664 (765)
T ss_dssp ECCC----------------------------CC------------SHHHHHHHHHHHHHHHCCTTEEEEEEST
T ss_pred cCCHHHHHHh----------------------cc------------cHHHHHHHHHHHHHHhccCCCEEEEECC
Confidence 5677776432 11 22788899999999 999999999999
No 96
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.45 E-value=2e-07 Score=91.32 Aligned_cols=63 Identities=21% Similarity=0.086 Sum_probs=43.8
Q ss_pred cchhhhHHHHHHHHHHHHH-Hh------------------ccCCCCEEEEEcCCCCcHHHHHHHHHHHHh--cCCCCCCc
Q psy2946 85 PMNYYMNVHIILEKQRSEA-EQ------------------QSKRGPITMIVGPQDVGKSTLCHILLNYAV--RMPGLNRK 143 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a-~~------------------~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~--~~~~~~~~ 143 (455)
.++++.|+++.|...-..+ +. ...+|++++|+|+||||||||+++|++++. +. +..
T Consensus 36 ~~i~~~~v~~~y~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~ 112 (308)
T 1sq5_A 36 EDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRR 112 (308)
T ss_dssp TTCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCC
T ss_pred cccchHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCe
Confidence 4678888888885321111 11 126789999999999999999999999986 55 444
Q ss_pred cEEEecC
Q psy2946 144 PIFVDLD 150 (455)
Q Consensus 144 ~~~vDlD 150 (455)
+.++++|
T Consensus 113 i~vi~~d 119 (308)
T 1sq5_A 113 VELITTD 119 (308)
T ss_dssp EEEEEGG
T ss_pred EEEEecC
Confidence 4444444
No 97
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.41 E-value=2.3e-07 Score=90.84 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=38.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq 153 (455)
.++++++|+|+|||||||+++.|++++.+. ++++.++|.|+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~r 144 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTFR 144 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTTC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEcccccc
Confidence 467799999999999999999999999888 8999999999743
No 98
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.41 E-value=6e-08 Score=88.51 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+|++++|+||||||||||+++|+++.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 479999999999999999999999983
No 99
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.40 E-value=6.9e-08 Score=94.42 Aligned_cols=60 Identities=22% Similarity=0.173 Sum_probs=35.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCC---CCeeeccccccccccCCCCcccCc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSV---PGTIGALVIERPATIEDGFSQLAP 182 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~---~G~~~~~~~~~~~~~~~~~~~q~p 182 (455)
..|++++|+|+||||||||+|+|+|+..+. .|+|.+ .|...............++++|.|
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~---------------~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p 229 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLKLR---------------VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTP 229 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------------------CCCSCCEEECTTSCEEESSC
T ss_pred hcCCeEEEECCCCCcHHHHHHHhccccccc---------------ccceecccCCCCCceeeeEEEEcCCCCEEEECc
Confidence 478999999999999999999999997665 788887 665432221111112457777766
No 100
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.38 E-value=3.5e-09 Score=106.42 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=27.3
Q ss_pred CC--CCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KR--GPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~--G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
.+ |++++|+|+||||||||+|+|+|+..+.
T Consensus 166 ~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 166 RPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp GGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred HHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 56 9999999999999999999999997654
No 101
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.36 E-value=1e-07 Score=97.13 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=24.5
Q ss_pred CCCCE--EEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPI--TMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~--v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+|++ ++|+|+||||||||+++|+|+.
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 68999 9999999999999999999973
No 102
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.35 E-value=4.9e-07 Score=90.76 Aligned_cols=33 Identities=9% Similarity=-0.030 Sum_probs=28.9
Q ss_pred cCCCccCCcHHHHHHHHHHcC------CCEEEEecCchh
Q psy2946 229 TCGWIKGDGFKCLMACAKSLR------VDNILVLDQERL 261 (455)
Q Consensus 229 t~g~~~s~G~~q~~~ia~al~------~~~~vll~DEpl 261 (455)
.+...+|+||+||++||+|+. .+|.++|+|||+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt 313 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGF 313 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCC
Confidence 345567889999999999998 799999999996
No 103
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.33 E-value=5.9e-07 Score=87.18 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=34.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
.+|++++|+|+||||||||++.|++.+.+.. |.++.|++.+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~--G~~v~~~~~e 73 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAM--GKKVGLAMLE 73 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTS--CCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc--CCeEEEEeCc
Confidence 7999999999999999999999999987651 3366676654
No 104
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.31 E-value=6.1e-08 Score=98.90 Aligned_cols=109 Identities=15% Similarity=-0.014 Sum_probs=55.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecCCC
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLT 191 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~~s 191 (455)
.++|+|+||||||||+++|+|...+. ++.|.+.+.+. ........++++|.+ .++..++
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~~~-------------~~~~~~~~~~~------~t~~~~~i~~v~q~~--~~~~~Lt 91 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDLYS-------------PEYPGPSHRIK------KTVQVEQSKVLIKEG--GVQLLLT 91 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCCCC-------------CCCCSCC-----------CCEEEEEECC--------CEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC-------------CCCCCcccCCc------cceeeeeEEEEEecC--Cccccee
Confidence 47999999999999999999986432 12222222111 000012245566655 4555678
Q ss_pred cccCHHHHHHHH-----HHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEE---EEecCchh
Q psy2946 192 PNANLELYQHCV-----ERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNI---LVLDQERL 261 (455)
Q Consensus 192 v~~n~~~~~~~~-----~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~---vll~DEpl 261 (455)
+.|++.+..... ..+.+.+...+. .+++++++|+|++..++. ++++|||.
T Consensus 92 v~Dt~g~~~~~~~~~~~~~i~~~i~~~~~--------------------~~l~qr~~IaRal~~d~~~~vlL~ldePt 149 (418)
T 2qag_C 92 IVDTPGFGDAVDNSNCWQPVIDYIDSKFE--------------------DYLNAESRVNRRQMPDNRVQCCLYFIAPS 149 (418)
T ss_dssp EEECC-----------CHHHHHHHHHHHH--------------------HHTTTSCC-CCCCCCCC-CCEEEEECCC-
T ss_pred eeechhhhhhccchhhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHhccCCCeeEEEEEecCc
Confidence 888887754321 111111111111 134557789999999988 89999986
No 105
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.29 E-value=1e-07 Score=95.68 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=27.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
.+|+.++|+||||||||||+++|+++..+.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~ 202 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFD 202 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTT
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 589999999999999999999999986554
No 106
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.27 E-value=8.9e-08 Score=89.28 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=25.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
++|++++|+||||||||||+++|+|...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 6899999999999999999999999864
No 107
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.27 E-value=4.7e-07 Score=88.50 Aligned_cols=69 Identities=22% Similarity=0.196 Sum_probs=45.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCC---CCeeeccccccccc-cCCCCcccCce
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSV---PGTIGALVIERPAT-IEDGFSQLAPI 183 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~---~G~~~~~~~~~~~~-~~~~~~~q~p~ 183 (455)
..|++++|+|+||||||||+|+|+ ...+. .|+|.+ .|........ ... ...++++|.|
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---------------~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~p- 224 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---------------TQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTP- 224 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---------------CSCC---------CCCCEE-EEEETTTEEEESSC-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---------------ccccccccCCCCCceeeEE-EEEcCCCcEEEECc-
Confidence 578999999999999999999999 75554 899988 7764332211 111 2468888887
Q ss_pred EEE-----ecCCCcccCH
Q psy2946 184 VYN-----YGHLTPNANL 196 (455)
Q Consensus 184 ~~~-----~g~~sv~~n~ 196 (455)
.+ +.++|+ +|+
T Consensus 225 -g~~~~~l~~~lt~-e~l 240 (302)
T 2yv5_A 225 -GFSKVEATMFVKP-REV 240 (302)
T ss_dssp -CCSSCCGGGTSCG-GGG
T ss_pred -CcCcCcccccCCH-HHH
Confidence 33 267788 666
No 108
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.22 E-value=8.9e-07 Score=81.39 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=27.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
.+|++++|+||||||||||+++|++++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~ 49 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQ 49 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 689999999999999999999999998764
No 109
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.21 E-value=1.5e-06 Score=91.39 Aligned_cols=104 Identities=15% Similarity=0.183 Sum_probs=63.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEE
Q psy2946 107 SKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYN 186 (455)
Q Consensus 107 ~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~ 186 (455)
..+|++++|+|+||||||||++.+++...+. |.+++|++.+-.. ..+ .... ..
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---G~~vi~~~~ee~~------~~l-----~~~~-------------~~ 330 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACAN---KERAILFAYEESR------AQL-----LRNA-------------YS 330 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTT---TCCEEEEESSSCH------HHH-----HHHH-------------HT
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---CCCEEEEEEeCCH------HHH-----HHHH-------------HH
Confidence 3799999999999999999999999998765 5444443321100 000 0000 00
Q ss_pred ecCCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCCcHHHHHHHHHHcCCCEEEEecCchhh
Q psy2946 187 YGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLY 262 (455)
Q Consensus 187 ~g~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~G~~q~~~ia~al~~~~~vll~DEpl~ 262 (455)
++ .+ + . .+.. .+ .-.+.+.....+|+|++|++.+++++..+|.++|+| |+.
T Consensus 331 ~g-~~----~-------~----~~~~-~g-------~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~ 381 (525)
T 1tf7_A 331 WG-MD----F-------E----EMER-QN-------LLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLS 381 (525)
T ss_dssp TS-CC----H-------H----HHHH-TT-------SEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHH
T ss_pred cC-CC----H-------H----HHHh-CC-------CEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChH
Confidence 00 00 0 0 0111 00 012233344456779999999999999999999999 874
No 110
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.19 E-value=1.4e-08 Score=104.31 Aligned_cols=61 Identities=20% Similarity=0.157 Sum_probs=47.6
Q ss_pred cchhhhHHHHHHHHHHHHHHhc---cCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCe
Q psy2946 85 PMNYYMNVHIILEKQRSEAEQQ---SKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGT 161 (455)
Q Consensus 85 ~ml~~~nl~~~~~~~r~~a~~~---~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~ 161 (455)
++++..|+++.|+.. ..++++ +.+|++++|+|+||||||||+++|+|+..++ .|.|.+.|.
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---------------~G~i~~~G~ 193 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---------------VIVVGLIGE 193 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---------------EEEEEEESC
T ss_pred CceEEeccceecCCC-ceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---------------eEEEEEece
Confidence 578888888888621 223333 3899999999999999999999999996554 778877776
No 111
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.15 E-value=3.4e-07 Score=84.81 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=27.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhc
Q psy2946 107 SKRGPITMIVGPQDVGKSTLCHILLNYAVR 136 (455)
Q Consensus 107 ~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~ 136 (455)
+.+|++++|+||||||||||+++|++...+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 379999999999999999999999997654
No 112
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.14 E-value=2.4e-08 Score=98.43 Aligned_cols=47 Identities=28% Similarity=0.299 Sum_probs=37.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeee
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIG 163 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~ 163 (455)
=++++|+|+||||||||+|.|++.. . +.+++++. +..|+|.++|...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~--~---~~~~aVi~--~d~G~i~idg~~l 50 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ--H---GYKIAVIE--NEFGEVSVDDQLI 50 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC--C---CCCEEEEC--SSCCSCCEEEEEE
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc--C---CCcEEEEE--ecCcccCccHHHH
Confidence 3689999999999999999999985 3 56666644 4467788887654
No 113
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.09 E-value=1.5e-06 Score=96.54 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
.+|++++|+||||||||||+|++++...
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~i~~ 698 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVALITI 698 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHH
Confidence 5799999999999999999999987654
No 114
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.09 E-value=1.7e-08 Score=92.47 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+|.+++|+|++|||||||++.|+|..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999999875
No 115
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.06 E-value=2e-06 Score=78.87 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=30.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDV 151 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDp 151 (455)
.+|++++|+|+||||||||+++|++++.+ .+.+++.|+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------~i~~v~~d~ 41 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE------RVALLPMDH 41 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG------GEEEEEGGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC------CeEEEecCc
Confidence 47899999999999999999999998632 345666554
No 116
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.05 E-value=2.7e-06 Score=88.07 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=35.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeee
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIG 163 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~ 163 (455)
.+ ++++|+||||||||||+++|+|+..++ +|+|.+.|...
T Consensus 28 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---------------~G~I~~~g~~~ 67 (483)
T 3euj_A 28 DE-LVTTLSGGNGAGKSTTMAGFVTALIPD---------------LTLLNFRNTTE 67 (483)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHHHHCCC---------------TTTCCCCCTTS
T ss_pred cc-ceEEEECCCCCcHHHHHHHHhcCCCCC---------------CCEEEECCEEc
Confidence 46 999999999999999999999998776 78888877643
No 117
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.02 E-value=9.9e-07 Score=99.33 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
|++++|+||||||||||+|++ |++.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH
Confidence 899999999999999999999 8864
No 118
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.02 E-value=1e-05 Score=82.68 Aligned_cols=124 Identities=18% Similarity=0.144 Sum_probs=74.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEec
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYG 188 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g 188 (455)
++.+++++|++||||||++..|+.++.+. |++|.++|+|+.... .. ... .......+ .+ ++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~~D~~r~~-----a~--eqL-~~~~~~~g----v~---~~~ 157 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVAADVYRPA-----AY--DQL-LQLGNQIG----VQ---VYG 157 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCSCHH-----HH--HHH-HHHHHTTT----CC---EEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEecCccchh-----HH--HHH-HHHHHhcC----Cc---eee
Confidence 46799999999999999999999999988 999999999975321 00 000 00001111 12 222
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCcc----CCcHHHHHHHHHHcCCCEEEEecCchh
Q psy2946 189 HLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIK----GDGFKCLMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 189 ~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~----s~G~~q~~~ia~al~~~~~vll~DEpl 261 (455)
..+..+ +.-. ... ..+.+ ......-++|||+|... ..-+.++..+.+++.++..+++.|.-.
T Consensus 158 ~~~~~d-p~~i---~~~----al~~a---~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 158 EPNNQN-PIEI---AKK----GVDIF---VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp CTTCSC-HHHH---HHH----HHHHT---TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ccccCC-HHHH---HHH----HHHHH---HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 212222 2111 111 11111 11233457999999532 224667778899999999999888643
No 119
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.01 E-value=4.6e-07 Score=88.62 Aligned_cols=70 Identities=17% Similarity=0.125 Sum_probs=37.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCC---CCeeeccccccccccCCCCcccCceE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSV---PGTIGALVIERPATIEDGFSQLAPIV 184 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~---~G~~~~~~~~~~~~~~~~~~~q~p~~ 184 (455)
.+|++++|+|+||||||||+++|+|...+. .|+|.. .|...... ........++++|.|
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---------------~G~I~~~~~~G~~tt~~-~~~~~~~~g~v~dtp-- 232 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPELGLR---------------TNEISEHLGRGKHTTRH-VELIHTSGGLVADTP-- 232 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC----------------------------------CCC-CCEEEETTEEEESSC--
T ss_pred cCCCEEEEECCCCCCHHHHHHHhccccccc---------------ccceeeecCCCcccccH-HHHhhcCCEEEecCC--
Confidence 589999999999999999999999987665 788876 55432221 111122257788887
Q ss_pred EEec----CCCcccCH
Q psy2946 185 YNYG----HLTPNANL 196 (455)
Q Consensus 185 ~~~g----~~sv~~n~ 196 (455)
.+.. ++++ +++
T Consensus 233 g~~~~~l~~lt~-e~l 247 (307)
T 1t9h_A 233 GFSSLEFTDIEE-EEL 247 (307)
T ss_dssp SCSSCCCTTCCH-HHH
T ss_pred CccccccccCCH-HHH
Confidence 3332 4556 555
No 120
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.00 E-value=5.4e-07 Score=89.89 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=26.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
++|++++|+|+||||||||++.|++..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 799999999999999999999999987
No 121
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.00 E-value=3.7e-06 Score=75.75 Aligned_cols=27 Identities=33% Similarity=0.367 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhc
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVR 136 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~ 136 (455)
|++++|+||||||||||+++|+++..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 568999999999999999999998753
No 122
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.00 E-value=5.1e-06 Score=80.89 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=38.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhc-CCCCCCccEEEecCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVR-MPGLNRKPIFVDLDVG 152 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~-~~~~~~~~~~vDlDpg 152 (455)
.+|++++++|+|||||||+++.|++++.+ . |.++.++|.|+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~---G~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEK---HKKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhc---CCEEEEEecCcc
Confidence 46889999999999999999999999986 5 889999999995
No 123
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.99 E-value=2.8e-07 Score=91.82 Aligned_cols=30 Identities=33% Similarity=0.225 Sum_probs=27.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
.+|++++|+|+||||||||+++|+|+..++
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 799999999999999999999999997554
No 124
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.96 E-value=4.8e-06 Score=75.91 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVD 148 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vD 148 (455)
.+|++++|+|++||||||+++.|++.+... |..+.++|
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~---G~~~~~~d 60 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQK---GKLCYILD 60 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CceEEEec
Confidence 689999999999999999999999998643 33334444
No 125
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.95 E-value=6.2e-06 Score=90.61 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=25.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
.+|++++|+||||||||||+|+|++...
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 4789999999999999999999999864
No 126
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.95 E-value=1.2e-05 Score=79.02 Aligned_cols=38 Identities=29% Similarity=0.267 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
+++|+|+||||||||+++|.+++... +.+.++.++..|
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~-~~~~~v~~i~~D 131 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRW-PDHPNVEVITTD 131 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS-TTCCCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccc-CCCCeEEEEeec
Confidence 89999999999999999999998632 003344444444
No 127
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.93 E-value=7.6e-06 Score=75.49 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=36.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDV 151 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDp 151 (455)
.+|++++|+|+||||||||++.|++...+. +.++.|++.+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~ 61 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEE 61 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSS
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEccc
Confidence 689999999999999999999999888777 77888887765
No 128
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.91 E-value=7.6e-06 Score=74.72 Aligned_cols=41 Identities=20% Similarity=0.106 Sum_probs=34.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDV 151 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDp 151 (455)
.+|.+++|+|++||||||+++.|++.+.+. +..+.+++.|.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d~ 60 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMDD 60 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccCc
Confidence 578899999999999999999999998776 55666665553
No 129
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.91 E-value=9.5e-06 Score=70.66 Aligned_cols=38 Identities=21% Similarity=0.426 Sum_probs=33.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEec
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDL 149 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDl 149 (455)
+|+.++|+||+|+|||||+++|++.+.+. |.++.|++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~---g~~~~~~~~ 72 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA---GKNAAYIDA 72 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT---TCCEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc---CCcEEEEcH
Confidence 78999999999999999999999998776 666666654
No 130
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.90 E-value=1e-05 Score=80.35 Aligned_cols=66 Identities=12% Similarity=0.013 Sum_probs=48.5
Q ss_pred chhhhHHHHHHHHHH--HHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCC
Q psy2946 86 MNYYMNVHIILEKQR--SEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQG 154 (455)
Q Consensus 86 ml~~~nl~~~~~~~r--~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG 154 (455)
+++..+..+.+.... ........++.+++|+|++|+|||||++.|++.+.+. +.++.++|.||+..
T Consensus 30 ~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~~d~~~~ 97 (341)
T 2p67_A 30 LVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIAVDPSSP 97 (341)
T ss_dssp HHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCC--
T ss_pred HhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEeecCCcC
Confidence 344455565554321 1111223788999999999999999999999999888 99999999999764
No 131
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.88 E-value=5e-05 Score=72.82 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=25.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
.+|++++|+|+||||||||++.|++.+.
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 6899999999999999999999998654
No 132
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.88 E-value=5.6e-06 Score=75.55 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
+|+.++|+||||||||||+++|+++..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 688999999999999999999999863
No 133
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.86 E-value=3.4e-06 Score=80.05 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=27.1
Q ss_pred cchhhhHH-HHHHHHHHHHHHhcc----CC---CCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 85 PMNYYMNV-HIILEKQRSEAEQQS----KR---GPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 85 ~ml~~~nl-~~~~~~~r~~a~~~~----~~---G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+++++.|+ ++.|++. ..++++. .+ |++++|+|++||||||++++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~-~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEE-QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCc-chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 35677777 7777211 2233332 45 9999999999999999999999975
No 134
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.86 E-value=1.2e-05 Score=79.05 Aligned_cols=43 Identities=28% Similarity=0.335 Sum_probs=39.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq 153 (455)
.++++++|+|++|+||||++..|++++.+. ++++.++|.|+..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r 145 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFR 145 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcc
Confidence 567899999999999999999999999988 9999999999854
No 135
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.86 E-value=9.1e-06 Score=90.56 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+|++++|+||||||||||+|+++...
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ial~~ 686 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTGVIV 686 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999996543
No 136
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.85 E-value=5.4e-06 Score=77.29 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=19.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHH-HHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILL-NYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~-~~~ 134 (455)
.+|++++|+||||||||||+++|+ ++.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999999999 985
No 137
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.83 E-value=1.1e-05 Score=72.28 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+|++++|+||||||||||++.|++..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999999999975
No 138
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.82 E-value=8.5e-05 Score=75.94 Aligned_cols=122 Identities=15% Similarity=0.079 Sum_probs=72.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEecC
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGH 189 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g~ 189 (455)
+.+++++|++|+||||++..|+.++... |++|+++|+|+..... ..-.. .+.... ..| ++..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~---G~kVllv~~D~~R~aa----~eqL~----~~~~~~----gvp---v~~~ 161 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR---GYKVGVVCSDTWRPGA----YHQLR----QLLDRY----HIE---VFGN 161 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCCSSTHH----HHHHH----HHHGGG----TCE---EECC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhH----HHHHH----HHHHhc----CCc---EEec
Confidence 5689999999999999999999999888 9999999999865421 00000 000001 112 2222
Q ss_pred CCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCC--cHHHHHHHHHHcCCCEEEEecCch
Q psy2946 190 LTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGD--GFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 190 ~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~--G~~q~~~ia~al~~~~~vll~DEp 260 (455)
.+. .++.-. .....+.... ....-++|||+|..... -+..+..+.++..++..+++.|--
T Consensus 162 ~~~-~dp~~i---~~~al~~a~~-------~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~ 223 (443)
T 3dm5_A 162 PQE-KDAIKL---AKEGVDYFKS-------KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGT 223 (443)
T ss_dssp TTC-CCHHHH---HHHHHHHHHH-------TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred CCC-CCHHHH---HHHHHHHHHh-------CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCC
Confidence 122 222211 1111111111 12345899999965432 244455677888899999888753
No 139
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.81 E-value=2.8e-06 Score=89.32 Aligned_cols=59 Identities=15% Similarity=0.003 Sum_probs=41.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHH--HHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHI--LLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAP 182 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~--L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p 182 (455)
.+|++++|+|+||||||||+++ ++|+..+. +|.+.+.|........ ......+|++|++
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---------------~g~i~v~g~~~~~~~~-~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---------------EPGVFVTFEETPQDII-KNARSFGWDLAKL 97 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---------------CCEEEEESSSCHHHHH-HHHGGGTCCHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---------------CCEEEEEEeCCHHHHH-HHHHHcCCChHHh
Confidence 6899999999999999999999 67887655 6666666654211111 1123467777764
No 140
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.79 E-value=1.9e-05 Score=76.84 Aligned_cols=42 Identities=29% Similarity=0.396 Sum_probs=39.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq 153 (455)
+|++++++|+||+||||+++.|++++.+. ++++.++|.|+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQR 138 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCccc
Confidence 67899999999999999999999999888 9999999999865
No 141
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.77 E-value=2.5e-05 Score=69.66 Aligned_cols=30 Identities=27% Similarity=0.301 Sum_probs=27.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
.+|+.++|+||||+|||||++.|++.+.+.
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~ 65 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEK 65 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 568999999999999999999999998743
No 142
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.77 E-value=2.6e-06 Score=80.92 Aligned_cols=30 Identities=33% Similarity=0.630 Sum_probs=25.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHH---HHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILL---NYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~---~~~~~~ 137 (455)
.+|++++|+|++||||||++|+|+ |+...+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 578999999999999999999999 654333
No 143
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.75 E-value=2.4e-06 Score=79.87 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeee
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIG 163 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~ 163 (455)
+++|+||||||||||+++|++++.++ +|.|.++|...
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~---------------~G~i~~~g~~~ 65 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPD---------------LTLLHFRNTTE 65 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCC---------------TTTC-------
T ss_pred EEEEECCCCCCHHHHHHHHhcccccC---------------CCeEEECCEEc
Confidence 56899999999999999999998776 78888877654
No 144
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.72 E-value=8.6e-06 Score=85.21 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=27.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
.+|+.++|+||||||||||+++|+|++.+.
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 478899999999999999999999998655
No 145
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.71 E-value=6e-05 Score=74.63 Aligned_cols=32 Identities=16% Similarity=-0.029 Sum_probs=27.3
Q ss_pred CCCccCCcHHH------HHHHHHHcCCCEEEEecCchh
Q psy2946 230 CGWIKGDGFKC------LMACAKSLRVDNILVLDQERL 261 (455)
Q Consensus 230 ~g~~~s~G~~q------~~~ia~al~~~~~vll~DEpl 261 (455)
+...+|+||+| ++++|+++..+|.++|+|||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~ 282 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPT 282 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCC
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 34556889999 678889999999999999997
No 146
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.71 E-value=2.1e-05 Score=71.58 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+|++++|+|+|||||||++++|++.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 479999999999999999999999975
No 147
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.68 E-value=4.3e-05 Score=67.99 Aligned_cols=51 Identities=24% Similarity=0.161 Sum_probs=36.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCC-CCCeee
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVS-VPGTIG 163 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~-~~G~~~ 163 (455)
-++++|+|++|||||||+..|+..+... +.++..+..|++.++|- -+|..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~---g~~v~~ik~~~~~~diD~~~g~D~ 55 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE---GWRVGTVKHHGHGGEPARPEGVDS 55 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC-------------
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc---CCeeeEEEeCCCCcccccCCChhH
Confidence 3689999999999999999999998877 89999999999876654 445544
No 148
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.67 E-value=4.2e-05 Score=68.42 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=36.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCee
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTI 162 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~ 162 (455)
-++++|+|++|||||||++.|++.+.+. +.++..+..|++..++--+|..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~---g~~v~~i~~~~~~~~id~~g~D 55 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR---GIRPGLIKHTHHDMDVDKPGKD 55 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCC----------
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc---CCceeEEeeCCCccccCCCCCc
Confidence 4789999999999999999999998777 8899999999887666545554
No 149
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.64 E-value=2.5e-05 Score=70.85 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=25.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
.+|++++|+|++||||||++++|+++..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999999999863
No 150
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.64 E-value=2.1e-05 Score=69.34 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+.+++|+|++||||||++++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999974
No 151
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.63 E-value=3.6e-05 Score=70.48 Aligned_cols=39 Identities=28% Similarity=0.304 Sum_probs=33.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCC
Q psy2946 107 SKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDV 151 (455)
Q Consensus 107 ~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDp 151 (455)
..+|++++|+|++|||||||++.|++ .. +.+++|+|.+.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~---~~---~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL---LS---GKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH---HH---CSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH---Hc---CCcEEEEECCC
Confidence 47999999999999999999999999 33 67888887765
No 152
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.63 E-value=4.2e-05 Score=76.09 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=38.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQG 154 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG 154 (455)
..+.+++|+|++|||||||++.|++...+. +.++.++..||+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~dp~~~ 115 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVDPSSC 115 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC---
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeecCCCC
Confidence 347899999999999999999999999888 89999999999864
No 153
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.63 E-value=3.6e-05 Score=68.55 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=31.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVD 148 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vD 148 (455)
.+|.+++|+|++||||||+++.|++.+.+. |..++.+|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~---g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCH---GIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhC---CCcEEEEC
Confidence 378899999999999999999999988665 55555555
No 154
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.61 E-value=3.9e-05 Score=70.32 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=25.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
.+|++++|+|||||||||+++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999998753
No 155
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.61 E-value=4.1e-05 Score=68.64 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=34.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
.+|.+++|+|++||||||+++.|+..+... +..+.++|.|
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~---~~~~~~~~~d 50 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKE---GYRVEVLDGD 50 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEeeHH
Confidence 578899999999999999999999998777 7777777755
No 156
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.61 E-value=2.8e-05 Score=69.81 Aligned_cols=23 Identities=43% Similarity=0.704 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLN 132 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~ 132 (455)
|++++|+|+|||||||++|+|++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 57899999999999999999987
No 157
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.56 E-value=5.5e-05 Score=73.54 Aligned_cols=42 Identities=29% Similarity=0.253 Sum_probs=39.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCC
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQG 154 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG 154 (455)
+.+++++|++|+||||++..|++.+.+. ++++.++|.|+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGADVYRP 139 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECCCSSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecCCCCH
Confidence 7799999999999999999999999888 99999999999654
No 158
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.53 E-value=4.8e-05 Score=76.37 Aligned_cols=30 Identities=23% Similarity=0.497 Sum_probs=27.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
.+|+.++|+||||||||||+++|++++.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 689999999999999999999999998753
No 159
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.52 E-value=6.9e-05 Score=69.63 Aligned_cols=27 Identities=33% Similarity=0.599 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+|++++|+||||||||||++.|++..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 789999999999999999999999953
No 160
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.52 E-value=1.7e-05 Score=74.58 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILL 131 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~ 131 (455)
++++++|+|+||||||||+++|+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999999999
No 161
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.51 E-value=8.1e-05 Score=75.85 Aligned_cols=123 Identities=19% Similarity=0.184 Sum_probs=74.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCceEEEec
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYG 188 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p~~~~~g 188 (455)
++.+++++|++||||||++..|++++.+. +.+|.++|+|+...... .... ......+ -+ +++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D~~r~aa~----~qL~----~~~~~~g----v~---v~~ 158 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRPAAR----EQLR----LLGEKVG----VP---VLE 158 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCSSCHHHH----HHHH----HHHHHHT----CC---EEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeeccccCchhH----HHHH----HhcccCC----cc---EEe
Confidence 57799999999999999999999999988 99999999998653210 0000 0000011 12 222
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHHhhccCCCCCcccEEEecCCCccCC--cHHHHHHHHHHcCCCEEEEecCch
Q psy2946 189 HLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGD--GFKCLMACAKSLRVDNILVLDQER 260 (455)
Q Consensus 189 ~~sv~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~iint~g~~~s~--G~~q~~~ia~al~~~~~vll~DEp 260 (455)
... ..++.-. .....+.... ....-++|||+|..... -+.++..+.+++.++..+++.|.-
T Consensus 159 ~~~-~~~p~~i---~~~~l~~~~~-------~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~ 221 (425)
T 2ffh_A 159 VMD-GESPESI---RRRVEEKARL-------EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAM 221 (425)
T ss_dssp CCT-TCCHHHH---HHHHHHHHHH-------TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred cCC-CCCHHHH---HHHHHHHHHH-------CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEecc
Confidence 111 1232211 1111111110 12345899999865422 356667788889999999888753
No 162
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.48 E-value=5.8e-05 Score=66.78 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+|++++|+|++||||||+++.|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999999874
No 163
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.44 E-value=0.00011 Score=68.39 Aligned_cols=42 Identities=19% Similarity=0.375 Sum_probs=34.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVG 152 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpg 152 (455)
.+|+.++|+|++|||||||+..++....+. +.+++|++.+..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~~ 62 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEEH 62 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccCC
Confidence 689999999999999999977776655556 788899887753
No 164
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.41 E-value=8.7e-05 Score=67.64 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=30.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
.+|.+++|+|++||||||+++.|++.+ ....++|.|
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~-------~~~~~i~~D 54 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL-------PNCSVISQD 54 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS-------TTEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc-------CCcEEEeCC
Confidence 678899999999999999999999863 145677776
No 165
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.39 E-value=0.00012 Score=66.52 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+|++++|+|++||||||+++.|+..+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999999875
No 166
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.37 E-value=6.6e-05 Score=79.14 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=28.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
.+|++++|+|+||||||||+|+|++.+.+.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 589999999999999999999999998766
No 167
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.31 E-value=6.6e-05 Score=69.93 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.+|.+++|.|++||||||++++|+++
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 68999999999999999999999987
No 168
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.31 E-value=0.00014 Score=64.68 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
+| +.+|+|+||||||||+++|...+...
T Consensus 26 ~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 26 KG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 55 99999999999999999999987543
No 169
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.30 E-value=0.00026 Score=66.66 Aligned_cols=44 Identities=32% Similarity=0.410 Sum_probs=39.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i 156 (455)
+..++++.|..|+||||++..|+..+. . +++++++|+||+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~---g~~v~vvd~D~~~~~~ 56 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-D---NYKVAYVNLDTGVKEL 56 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-T---TSCEEEEECCSSCSCC
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-C---CCeEEEEeCCCCcccc
Confidence 556889999999999999999999887 7 9999999999987765
No 170
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.28 E-value=0.00016 Score=65.96 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+|+.++|+||+|||||||++.|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 478999999999999999999999874
No 171
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.23 E-value=0.00058 Score=67.90 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=36.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQG 154 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG 154 (455)
....+++|+|+.|+|||||+..|+..+... |.+++++|.||+..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~---g~kV~vi~~Dp~~~ 120 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIER---GHRVAVLAVDPSST 120 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEEEC----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhC---CCceEEEecCCCCC
Confidence 455689999999999999999999998877 99999999999875
No 172
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.22 E-value=0.00016 Score=66.26 Aligned_cols=39 Identities=31% Similarity=0.293 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVD 148 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vD 148 (455)
.+|.+++|+|++||||||+++.|++.+.+.. |....++|
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~--g~~~~~~~ 61 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDR--RVHAYRLD 61 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHH--CCCEEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccc--CCcEEEEC
Confidence 6789999999999999999999999876320 44455555
No 173
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.22 E-value=0.00073 Score=67.21 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.-+.++|+|++|||||||++.|+|.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4569999999999999999999994
No 174
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.22 E-value=0.00023 Score=70.82 Aligned_cols=42 Identities=31% Similarity=0.447 Sum_probs=37.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVG 152 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpg 152 (455)
.+|.++.|.||+|||||||+..++..+.+. +.+++|+|.+..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s 100 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHA 100 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccc
Confidence 689999999999999999999999998887 888999987644
No 175
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.21 E-value=0.00032 Score=67.91 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=26.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
.++.+++|+|++|||||||++.|.+++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 567899999999999999999999998653
No 176
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.16 E-value=0.00026 Score=65.13 Aligned_cols=26 Identities=35% Similarity=0.646 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+.+++|+|++||||||++++|++.+
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999875
No 177
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.16 E-value=0.00019 Score=73.38 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=37.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCC
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQG 154 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG 154 (455)
.+++|+|++|+||||++..|++.+... |++|+++|+|+...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~---G~kVllv~~D~~r~ 140 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR---GLKPALIAADTYRP 140 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH---HCCEEEECCSCCCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeccccCc
Confidence 489999999999999999999999887 89999999999653
No 178
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.16 E-value=0.00046 Score=65.13 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=24.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
..+..++|+|++||||||+++.|+..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 556789999999999999999999874
No 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.15 E-value=0.0017 Score=63.94 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCeeeccccccccccCCCCcccCc
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAP 182 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~~~~~~~~~~~~~~~~~~~q~p 182 (455)
+.+.++|.||+|+||||+++.|++.+.. +..|.+.++|........ .....+++++.+
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~l~~--------------~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~ 92 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLESIFG--------------PGVYRLKIDVRQFVTASN--RKLELNVVSSPY 92 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHHHSC--------------TTCCC--------------------CCEECSS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHcC--------------CCCCeEEecceeeccccc--ccceeeeecccc
Confidence 3344999999999999999999994422 226777776653221111 123345555655
No 180
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.11 E-value=0.00036 Score=63.19 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
...+++|+|++||||||+++.|+..+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999875
No 181
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.07 E-value=0.00041 Score=68.93 Aligned_cols=41 Identities=27% Similarity=0.409 Sum_probs=37.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDV 151 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDp 151 (455)
.+|.++.|.|++|||||||+..++..+... +.+++|+|.+-
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~ 99 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEH 99 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCC
Confidence 689999999999999999999999877777 88999999874
No 182
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.06 E-value=0.00066 Score=63.77 Aligned_cols=45 Identities=22% Similarity=0.371 Sum_probs=32.9
Q ss_pred chhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 86 MNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 86 ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+.++.++.+.|... .++++. .+| ++|+||+|+|||||+++|++..
T Consensus 25 ~~~l~~l~~~~~~~--~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 25 KEELKEIVEFLKNP--SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHHHHHHHHHHHCH--HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCH--HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 45667777776542 233322 445 9999999999999999999985
No 183
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.03 E-value=0.00029 Score=68.17 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=28.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
++.+++|.|++||||||+++.|...+... +..+.++|+|
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~---~~~~~vI~~D 42 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRRE---GVKAVSIEGD 42 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhc---CCCeeEeecc
Confidence 45789999999999999999999865433 4556677766
No 184
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.02 E-value=0.00059 Score=60.69 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhc
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVR 136 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~ 136 (455)
|.+++|.|++||||||+++.|+..+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999999987643
No 185
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.00 E-value=0.00061 Score=59.50 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+++|+|++||||||+++.|+..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999875
No 186
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.99 E-value=0.00021 Score=72.09 Aligned_cols=49 Identities=29% Similarity=0.376 Sum_probs=33.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh-cCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV-RMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~-~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
..|.+++|+|+||||||||+++|+|... .. ...|. .=.+|..|.+.++|
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~---~~~p~-tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNP---ANYPY-ATIDPEEAKVAVPD 67 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTST---TCCSS-CCCCTTEEEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccc---cCCCc-eeecceeeeeeeCC
Confidence 6799999999999999999999999432 11 11110 01455666666665
No 187
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.94 E-value=0.00041 Score=63.07 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+|..++|+|++||||||+++.|+..+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 588999999999999999999999864
No 188
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.94 E-value=0.00038 Score=63.20 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLN 132 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~ 132 (455)
+++|+|++||||||++++|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 189
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.94 E-value=0.00057 Score=64.78 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
++..++|+|++||||||+++.|+..+... |+.++++|.|
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~---g~~~i~~~~D 41 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKN---NIDVIVLGSD 41 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECTH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhC---CCEEEEECch
Confidence 46789999999999999999999886544 5555545544
No 190
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.94 E-value=0.00041 Score=62.83 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLN 132 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~ 132 (455)
+++|+|++||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 789999999999999999998
No 191
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.93 E-value=0.00041 Score=62.21 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhc
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVR 136 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~ 136 (455)
-+++|+|+||||||||++.|++...+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 37899999999999999999997543
No 192
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.93 E-value=0.00098 Score=63.63 Aligned_cols=45 Identities=22% Similarity=0.371 Sum_probs=32.5
Q ss_pred chhhhHHHHHHHHHHHHHHhcc----CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 86 MNYYMNVHIILEKQRSEAEQQS----KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 86 ml~~~nl~~~~~~~r~~a~~~~----~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+.++.++.+.|... .++++. .+| ++|+||+|+|||||+++|++..
T Consensus 49 ~~~l~~l~~~~~~~--~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 49 KEELKEIVEFLKNP--SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHHHHHHHHHHHCH--HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCH--HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 45566777766542 233332 344 9999999999999999999985
No 193
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.93 E-value=0.0021 Score=57.91 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=30.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEec
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDL 149 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDl 149 (455)
..++|.||+|+|||||++.|++.+... +..+.++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~---~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR---NVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEh
Confidence 689999999999999999999998766 555555543
No 194
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.92 E-value=0.00085 Score=65.00 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=37.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVG 152 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpg 152 (455)
..+.+++|.|.-|+||||++-.|+..+... |.+|++||+||.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~---G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL---GKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC---CCeEEEEeCCCC
Confidence 467789999999999999999999998888 999999999994
No 195
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.92 E-value=0.00066 Score=59.86 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+..+.|+|++||||||+++.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999874
No 196
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.90 E-value=0.00069 Score=60.26 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEe
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVD 148 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vD 148 (455)
+++|+|+.||||||+++.|+..+... +..+.++|
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~---g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ---GINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT---TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc---CceEEEEE
Confidence 68999999999999999999987544 44455543
No 197
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.90 E-value=0.0012 Score=66.29 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=26.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 107 SKRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 107 ~~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.++|+.++|+||+|||||||+++|++..
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3789999999999999999999999974
No 198
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.89 E-value=0.0005 Score=61.88 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+++|+|++|||||||++.|+|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999974
No 199
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.88 E-value=0.0014 Score=63.21 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
..+..++|+|++||||||+++.|+..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456689999999999999999998753
No 200
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.88 E-value=0.00042 Score=68.26 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
..+.++|+||||+|||||+|+|+|.+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34789999999999999999999987
No 201
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.86 E-value=0.00095 Score=61.74 Aligned_cols=43 Identities=28% Similarity=0.215 Sum_probs=37.3
Q ss_pred CEEEEEcC-CCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcC
Q psy2946 111 PITMIVGP-QDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 111 ~~v~IvG~-nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i 156 (455)
.+++|.+. -|+||||++-.|+..+... |++|++||+|+.+|.+
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~---g~~VlliD~D~~~~~l 46 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDR---GRKVLAVDGDLTMANL 46 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCTTSCCH
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhc---CCeEEEEeCCCCCCCh
Confidence 46778776 5799999999999998888 9999999999987764
No 202
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.86 E-value=0.00072 Score=68.37 Aligned_cols=43 Identities=33% Similarity=0.588 Sum_probs=29.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHH-HHHhcC-C-CCCCccEEEecC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILL-NYAVRM-P-GLNRKPIFVDLD 150 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~-~~~~~~-~-~~~~~~~~vDlD 150 (455)
.+|++++|+|++|||||||++.|+ +.+.+. . +.+.+++|+|..
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 789999999999999999999775 333221 0 013456666543
No 203
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.85 E-value=0.00085 Score=69.80 Aligned_cols=41 Identities=32% Similarity=0.396 Sum_probs=36.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq 153 (455)
..+++|+|++|+||||++..|+.++... |.+|++||.|+..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~---G~kVllVd~D~~r 141 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRK---GWKTCLICADTFR 141 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEeccccc
Confidence 3489999999999999999999998887 8999999999954
No 204
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.85 E-value=0.00095 Score=62.59 Aligned_cols=45 Identities=18% Similarity=0.342 Sum_probs=38.4
Q ss_pred CCEEEEEcC-CCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCC
Q psy2946 110 GPITMIVGP-QDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVS 157 (455)
Q Consensus 110 G~~v~IvG~-nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~ 157 (455)
+.+++|.+. -|+||||++-.|+..+... |++|++||+|++++.+.
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~---g~~VlliD~D~~~~~~~ 47 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQK---GKKTVVIDFAIGLRNLD 47 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSSCCHH
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhC---CCcEEEEECCCCCCChh
Confidence 357788776 5699999999999999888 99999999999887653
No 205
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.84 E-value=0.00089 Score=59.79 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.++.+++|+|++||||||+++.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999999999986
No 206
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.84 E-value=0.00049 Score=65.92 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
++| ++|+||||+|||||+|+|+|..
T Consensus 44 ~~G--vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 44 PAG--VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp CSE--EEEESSTTSCHHHHHHHHHHHT
T ss_pred CCe--EEEECCCCCcHHHHHHHHHHHc
Confidence 455 9999999999999999999985
No 207
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.82 E-value=0.00082 Score=59.68 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+..++|+|++||||||+++.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999999765
No 208
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.80 E-value=0.0013 Score=60.44 Aligned_cols=39 Identities=21% Similarity=0.384 Sum_probs=34.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
.+..++|.||+|+|||||++.+++.+... +..+.+++++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~~ 89 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPLG 89 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHH
Confidence 67899999999999999999999998776 7777887764
No 209
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.79 E-value=0.0027 Score=61.50 Aligned_cols=46 Identities=28% Similarity=0.467 Sum_probs=40.7
Q ss_pred CCCCEEEEEcC-CCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcC
Q psy2946 108 KRGPITMIVGP-QDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 108 ~~G~~v~IvG~-nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i 156 (455)
.++.+++|.|+ .|+||||++-.|+..+... |.+|++||+|+.++.+
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~---G~rVLLID~D~r~~~l 148 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQS---DQKVLFIDADLRRGYS 148 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHT---TCCEEEEECCTTTCCH
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhC---CCcEEEEECCCCCccH
Confidence 45679999998 5899999999999988887 9999999999988765
No 210
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.79 E-value=0.0013 Score=69.24 Aligned_cols=46 Identities=28% Similarity=0.369 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHhcc---CCCCEEEEEcCCCCcHHHHHHHHHHHHhc
Q psy2946 89 YMNVHIILEKQRSEAEQQS---KRGPITMIVGPQDVGKSTLCHILLNYAVR 136 (455)
Q Consensus 89 ~~nl~~~~~~~r~~a~~~~---~~G~~v~IvG~nGsGKSTL~r~L~~~~~~ 136 (455)
..++.+.|... .++... .+|+.++|+||+|+|||||+|+|++.+.+
T Consensus 86 ~~~vk~~i~~~--~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 86 LEKVKERILEY--LAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CHHHHHHHHHH--HHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHH--HHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 35666666542 222221 47999999999999999999999999743
No 211
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.74 E-value=0.00072 Score=60.08 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+|.+++|+|++||||||+++.|+..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999999754
No 212
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.72 E-value=0.00075 Score=59.57 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+++|+|++||||||+++.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999865
No 213
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.70 E-value=0.0013 Score=62.22 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.++|+|++|||||||++.|+...
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999999865
No 214
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.70 E-value=0.0017 Score=61.27 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=37.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcC
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i 156 (455)
+++|.|.-|+||||++-.|+..+... |++|++||+||..+..
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~---G~~VlliD~D~q~~~~ 44 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAM---GKTIMVVGCDPKADST 44 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTT---TCCEEEEEECTTSCSS
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHC---CCcEEEEcCCCCCCHH
Confidence 57778999999999999999998887 9999999999976543
No 215
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.69 E-value=0.0014 Score=65.77 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
.+..++|+|++||||||+++.|+...... +.+++++|.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~---~~~~~~~D~~ 72 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ---GSRVIIIDPE 72 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEESS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC---CCEEEEEeCC
Confidence 56788999999999999999999988877 7888887654
No 216
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=96.68 E-value=0.00096 Score=62.89 Aligned_cols=44 Identities=27% Similarity=0.424 Sum_probs=37.8
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcC
Q psy2946 109 RGPITMIVGP-QDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 109 ~G~~v~IvG~-nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i 156 (455)
.+.+++|.+. -|+||||++-.|+..+... |++|++||+||. |.+
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~---g~~VlliD~D~~-~~~ 49 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARL---GKRVLLVDLDPQ-GNA 49 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHT---TCCEEEEECCTT-CHH
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHC---CCCEEEEECCCC-cCH
Confidence 5678899865 4799999999999998888 999999999994 553
No 217
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.66 E-value=0.002 Score=58.19 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhc
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVR 136 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~ 136 (455)
+|.+++|.|+.||||||+++.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4668999999999999999999987643
No 218
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=96.65 E-value=0.0012 Score=63.39 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=37.3
Q ss_pred CEEEEEcC-CCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcC
Q psy2946 111 PITMIVGP-QDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 111 ~~v~IvG~-nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i 156 (455)
.+++|.+. -|+||||++-.|+..+... |.+|++||+|+.|+.+
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~---G~~VlliD~D~~q~~l 48 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYG---GAKVAVIDLDLRQRTS 48 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHT---TCCEEEEECCTTTCHH
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHC---CCcEEEEECCCCCCCH
Confidence 46777765 5799999999999999888 9999999999988765
No 219
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.64 E-value=0.0012 Score=61.20 Aligned_cols=41 Identities=24% Similarity=0.205 Sum_probs=36.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcC
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i 156 (455)
+++|.|.-|+||||++-.|+..+... |++|++||+|+. |.+
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~---g~~VlliD~D~~-~~l 42 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASD---YDKIYAVDGDPD-SCL 42 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTT---CSCEEEEEECTT-SCH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCC-cCh
Confidence 46779999999999999999999888 999999999995 654
No 220
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.64 E-value=0.0045 Score=59.60 Aligned_cols=46 Identities=20% Similarity=0.449 Sum_probs=40.4
Q ss_pred CCCCEEEEEcC-CCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcC
Q psy2946 108 KRGPITMIVGP-QDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 108 ~~G~~v~IvG~-nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i 156 (455)
.++.+++|.|+ .|+||||++-.|+-.+... |.+|++||+|+..+.+
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~---G~rVLLID~D~~~~~l 136 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQT---NKRVLLIDCDMRKGYT 136 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTT---TCCEEEEECCTTTCCH
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhC---CCCEEEEeccCCCCCH
Confidence 45678999988 5899999999999998887 9999999999988754
No 221
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.64 E-value=0.001 Score=58.99 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+++++|+|+.||||||+++.|+..+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999999864
No 222
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.63 E-value=0.00081 Score=59.18 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+|.+++|+|++|+|||||++.|++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999999875
No 223
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.62 E-value=0.005 Score=58.73 Aligned_cols=46 Identities=22% Similarity=0.170 Sum_probs=40.2
Q ss_pred CCCCEEEEEcC-CCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcC
Q psy2946 108 KRGPITMIVGP-QDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 108 ~~G~~v~IvG~-nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i 156 (455)
.+..+++|.|+ .|+||||++-.|+..+... |.+|++||+|+..+.+
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~---G~rVLLID~D~~~~~l 126 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQA---GYKTLIVDGDMRKPTQ 126 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCSSSCCH
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhC---CCeEEEEeCCCCCccH
Confidence 45678999987 5899999999999998888 9999999999987754
No 224
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.61 E-value=0.0012 Score=67.40 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=25.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
.|++++|+||||||||||+++|++++.+.
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 57899999999999999999999987543
No 225
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.55 E-value=0.0027 Score=61.84 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEec
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDL 149 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDl 149 (455)
.+..++|.||+|+|||||++.+++.+... +..+.++++
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~ 73 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSA 73 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEH
Confidence 45679999999999999999999998766 666666664
No 226
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.51 E-value=0.0019 Score=56.45 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
-+.++|.|+.||||||+++.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3789999999999999999999865
No 227
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.49 E-value=0.0025 Score=58.04 Aligned_cols=41 Identities=20% Similarity=-0.006 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq 153 (455)
.-.+++|+|..|+|||||++.|++... . ..++..++.|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~-~---~~~~~~i~~d~~~ 69 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG-N---EVKIGAMLGDVVS 69 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT-T---TSCEEEEECSCCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc-c---CCeEEEEecCCCC
Confidence 456899999999999999999998763 2 4578888988863
No 228
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.49 E-value=0.0018 Score=60.14 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+|.+++|+|++||||||+++.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 688999999999999999999999854
No 229
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.48 E-value=0.003 Score=56.37 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEE
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFV 147 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~v 147 (455)
+++|.|+.||||||+++.|...+... |..++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~---g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR---GKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC---CC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEe
Confidence 58999999999999999999987665 5555543
No 230
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=96.47 E-value=0.0028 Score=59.88 Aligned_cols=45 Identities=22% Similarity=0.198 Sum_probs=39.2
Q ss_pred CCCEEEEEcCC-CCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcC
Q psy2946 109 RGPITMIVGPQ-DVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 109 ~G~~v~IvG~n-GsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i 156 (455)
.+.+++|.+.+ |+||||++-.|+..+... |++|++||+|+..+.+
T Consensus 17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la~~---G~~VlliD~D~~~~~l 62 (262)
T 2ph1_A 17 IKSRIAVMSGKGGVGKSTVTALLAVHYARQ---GKKVGILDADFLGPSI 62 (262)
T ss_dssp CSCEEEEECSSSCTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCCHH
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCCCCCH
Confidence 56788888775 699999999999998888 9999999999998654
No 231
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.47 E-value=0.0027 Score=64.80 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=36.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCC
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQG 154 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG 154 (455)
..+++++|++|+||||++--|+..+.... |++|+++|+|+...
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~--G~kVllvd~D~~r~ 142 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKH--KKKVLVVSADVYRP 142 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTS--CCCEEEEECCCSST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEEecCCCCc
Confidence 34889999999999999999998876531 78999999999653
No 232
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.46 E-value=0.0023 Score=63.22 Aligned_cols=44 Identities=30% Similarity=0.232 Sum_probs=33.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC---CCCCCccEEEecCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM---PGLNRKPIFVDLDV 151 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~---~~~~~~~~~vDlDp 151 (455)
++|+++.|.|++|+|||||+..++...... .+.+.+++|+|.+-
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 789999999999999999999998864321 00155677776643
No 233
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.46 E-value=0.0029 Score=57.31 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=26.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
.+|.+++|+|+.||||||+++.|+..+...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 367899999999999999999999876544
No 234
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.46 E-value=0.0015 Score=56.55 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
...+|+|||||||||++..|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998544
No 235
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.46 E-value=0.0029 Score=58.64 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=37.8
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCC
Q psy2946 109 RGPITMIVGP-QDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVS 157 (455)
Q Consensus 109 ~G~~v~IvG~-nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~ 157 (455)
.+.+++|.+. -|+||||++-.|+..+... .|.+|++||+|+..|.+.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~--~g~~VlliD~D~~~~~l~ 50 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQE--PDIHVLAVDISLPFGDLD 50 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTS--TTCCEEEEECCTTTCCGG
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhC--cCCCEEEEECCCCCCCHH
Confidence 5678888876 5799999999999887542 178999999999867653
No 236
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.45 E-value=0.0034 Score=58.21 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=37.1
Q ss_pred CCC-EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCc
Q psy2946 109 RGP-ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGH 155 (455)
Q Consensus 109 ~G~-~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~ 155 (455)
+|. ++.+.|+.|+||||++-.++..+... |.+|.++|+|| ||.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~---G~~V~v~d~D~-q~~ 47 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQ---GVRVMAGVVET-HGR 47 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC-TTC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC---CCCEEEEEeCC-CCC
Confidence 455 58889999999999999999888888 99999999999 443
No 237
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.44 E-value=0.0027 Score=56.40 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
+++|.|+.||||||+++.|+..+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQK 27 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 68999999999999999999987544
No 238
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.44 E-value=0.0026 Score=63.27 Aligned_cols=41 Identities=32% Similarity=0.460 Sum_probs=36.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDV 151 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDp 151 (455)
++|.++.|.|++|+|||||+..++..+... +.+++|+|++-
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~ 101 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEH 101 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 689999999999999999999999877777 88999999864
No 239
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.43 E-value=0.003 Score=60.53 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=37.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcC
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i 156 (455)
.+++|.|.-|+||||++-.|+..+... |++|++||+||..+..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~---G~rVlliD~D~q~~~~ 45 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM---GKKVMIVGCDPKADST 45 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEECSSSCSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC---CCeEEEEecCCCCCHH
Confidence 367778989999999999999998888 9999999999976543
No 240
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.43 E-value=0.0031 Score=60.71 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=31.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCC
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDV 151 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDp 151 (455)
..++|.||+|+||||+++.|++.+.+. +....++|+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~---~~~~~~~~~~~ 85 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRIDMTE 85 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSC---GGGEEEEEGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCC---CcceEEeeccc
Confidence 479999999999999999999998766 55566666643
No 241
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.43 E-value=0.00078 Score=61.22 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEE
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFV 147 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~v 147 (455)
+++|+|++||||||+++.|+..+... +..+.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~---g~~v~~~ 34 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA---GRSVATL 34 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE---EEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEE
Confidence 68999999999999999999988655 4444443
No 242
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.41 E-value=0.00015 Score=79.76 Aligned_cols=34 Identities=12% Similarity=-0.038 Sum_probs=29.0
Q ss_pred ecCCCccCCcHHHHHHHHHHcCCCE--EEEecCchh
Q psy2946 228 NTCGWIKGDGFKCLMACAKSLRVDN--ILVLDQERL 261 (455)
Q Consensus 228 nt~g~~~s~G~~q~~~ia~al~~~~--~vll~DEpl 261 (455)
+.+...+|+|++||++||++|..++ .++|+|||+
T Consensus 374 ~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT 409 (842)
T 2vf7_A 374 DRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPS 409 (842)
T ss_dssp TCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTT
T ss_pred cCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCcc
Confidence 3455567789999999999999998 599999995
No 243
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.41 E-value=0.0017 Score=64.70 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+| +++|+|||||||||++++|.++.
T Consensus 25 ~~g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 25 PEG-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp CSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCC-eEEEECCCCCChhHHHHHHHHhc
Confidence 467 99999999999999999999854
No 244
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.38 E-value=0.0024 Score=60.05 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+++|.|+.||||||+++.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998853
No 245
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.38 E-value=0.0016 Score=56.67 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.+++|+|++|+|||||++.|++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 246
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.36 E-value=0.0023 Score=57.05 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.++.+++|+|+.||||||+++.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999764
No 247
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.36 E-value=0.0025 Score=57.60 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
...+++|+|+.||||||+++.|+..+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999999863
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.35 E-value=0.0019 Score=56.11 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHIL 130 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L 130 (455)
.+++|+|++||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 249
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.35 E-value=0.0025 Score=55.42 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+++|.|+.||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999864
No 250
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.35 E-value=0.002 Score=57.32 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+..+.|+|++||||||+++.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999999764
No 251
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.34 E-value=0.0025 Score=57.41 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
++++|.|++||||||+++.|+..+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999999864
No 252
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.33 E-value=0.0023 Score=59.55 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=25.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
.+|.+++|.|++||||||+++.|+..+.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999999863
No 253
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.31 E-value=0.0027 Score=57.10 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=34.0
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCC
Q psy2946 112 ITMIVGP-QDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQG 154 (455)
Q Consensus 112 ~v~IvG~-nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG 154 (455)
+++|.+. -|+||||++-.|+..+... |.+|+++|+||..+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~---g~~vlliD~D~~~~ 43 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRS---GYNIAVVDTDPQMS 43 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCTTCH
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHC---CCeEEEEECCCCCC
Confidence 5677755 6699999999999998888 99999999997543
No 254
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.31 E-value=0.0025 Score=57.17 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+++|+|+.||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999875
No 255
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.28 E-value=0.0021 Score=56.22 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+++|+|+.||||||+++.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999864
No 256
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.28 E-value=0.0052 Score=52.51 Aligned_cols=30 Identities=13% Similarity=0.198 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
..+.-++|.||+|+|||++++.|.+...+.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 455678999999999999999999876443
No 257
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.27 E-value=0.0043 Score=56.61 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=32.5
Q ss_pred EEEEEc-CCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC
Q psy2946 112 ITMIVG-PQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 112 ~v~IvG-~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq 153 (455)
+++|.+ .-|+||||++-.|+..+... | +|+++|+||..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~---g-~VlliD~D~q~ 40 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQ---G-ETLLIDGDPNR 40 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTT---S-CEEEEEECTTC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhc---C-CEEEEECCCCC
Confidence 566664 46899999999999999887 8 99999999964
No 258
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.27 E-value=0.0029 Score=59.75 Aligned_cols=43 Identities=33% Similarity=0.390 Sum_probs=36.1
Q ss_pred CCCCEEEEEcC-CCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCC
Q psy2946 108 KRGPITMIVGP-QDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQG 154 (455)
Q Consensus 108 ~~G~~v~IvG~-nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG 154 (455)
..+.+++|.+. -|+||||++-.|+..+. . |++|++||+|+..+
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~---g~~VlliD~D~~~~ 68 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-K---NNKVLLIDMDTQAS 68 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-T---TSCEEEEEECTTCH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-C---CCCEEEEECCCCCC
Confidence 35678888776 56999999999999887 7 99999999999754
No 259
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.27 E-value=0.0039 Score=56.34 Aligned_cols=29 Identities=31% Similarity=0.520 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVR 136 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~ 136 (455)
.+|.+++|+|+.||||||+++.|+..+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999987643
No 260
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.26 E-value=0.0029 Score=67.40 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq 153 (455)
..|+.++|+||+|+|||||+++|++++.+. .....+++.++..
T Consensus 58 ~~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 58 NQKRHVLLIGEPGTGKSMLGQAMAELLPTE---TLEDILVFPNPED 100 (604)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHTSCCS---SCEEEEEECCTTC
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCCcc---cCCeEEEeCCccc
Confidence 478899999999999999999999998665 4455555555543
No 261
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.26 E-value=0.0025 Score=56.34 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
..+..++|+|++||||||+++.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999764
No 262
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.23 E-value=0.0022 Score=56.54 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.+++|+|++|+|||||++.|++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 263
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.22 E-value=0.0028 Score=56.98 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+|.+++|+|+.||||||+++.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999864
No 264
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.21 E-value=0.0027 Score=55.74 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLN 132 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~ 132 (455)
.+++|+|++||||||+++.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999997
No 265
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.19 E-value=0.0048 Score=63.36 Aligned_cols=41 Identities=15% Similarity=0.322 Sum_probs=35.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhc-CCCCCCccEEEecCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVR-MPGLNRKPIFVDLDV 151 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~-~~~~~~~~~~vDlDp 151 (455)
.+|+.++|.|++|+|||||+..++..+.. . |.+++|++++-
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~---g~~Vl~~s~E~ 242 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKT---NENVAIFSLEM 242 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHS---SCCEEEEESSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEEEECCC
Confidence 79999999999999999999999987765 4 56788877664
No 266
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.16 E-value=0.0029 Score=56.19 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+.+++|+|+.||||||+++.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
No 267
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=96.14 E-value=0.0036 Score=60.09 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=37.4
Q ss_pred CCCEEEEEc---CCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCC
Q psy2946 109 RGPITMIVG---PQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQG 154 (455)
Q Consensus 109 ~G~~v~IvG---~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG 154 (455)
.+++++|.+ .-|+||||++-.|+..+... |.+|++||+||..+
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~---G~rVlliD~D~q~~ 78 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKL---NLKVLMIDKDLQAT 78 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHT---TCCEEEEEECTTCH
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHHHhC---CCeEEEEeCCCCCC
Confidence 467788886 78999999999999988877 99999999999754
No 268
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.13 E-value=0.0055 Score=57.58 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=36.5
Q ss_pred CEEEEEc-CCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcC
Q psy2946 111 PITMIVG-PQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 111 ~~v~IvG-~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i 156 (455)
.+++|++ ..|+||||++-.|+..+... |.+|++||+|+.+|.+
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~---g~~VlliD~D~~~~~l 46 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQL---GHDVTIVDADITMANL 46 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHT---TCCEEEEECCCSSSSH
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhC---CCcEEEEECCCCCCCc
Confidence 4566765 46799999999999998888 9999999999988765
No 269
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.13 E-value=0.0038 Score=57.19 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
++.+++|+|+.||||||+++.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 67899999999999999999999865
No 270
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.13 E-value=0.0032 Score=58.75 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
...+++|.||+||||||+++.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999764
No 271
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.11 E-value=0.0013 Score=66.76 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=24.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+.++.++|+|+||||||||++.|++.
T Consensus 155 k~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 155 MLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp CCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 57899999999999999999999986
No 272
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.10 E-value=0.0027 Score=62.37 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=28.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCC
Q psy2946 113 TMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDV 151 (455)
Q Consensus 113 v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDp 151 (455)
+++.||+|+||||+++++++.+... .+...+++++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~---~~~~~~~~~~~ 84 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGK---NYSNMVLELNA 84 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTT---SHHHHEEEECT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC---CccceEEEEcC
Confidence 9999999999999999999998655 44444444444
No 273
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.10 E-value=0.0032 Score=57.50 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLN 132 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~ 132 (455)
+.+++|.|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 274
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.09 E-value=0.0036 Score=55.97 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+.+++|+|+.||||||+++.|+..+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999865
No 275
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.09 E-value=0.0023 Score=56.66 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+++|+|++|+|||||++.|++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999974
No 276
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.08 E-value=0.0053 Score=53.74 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhc
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVR 136 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~ 136 (455)
.+..++|.|+.|+||||+++.++..+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567899999999999999999998754
No 277
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.06 E-value=0.0032 Score=56.50 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+..+++|+|+.||||||+++.|+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999999975
No 278
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.04 E-value=0.0052 Score=61.31 Aligned_cols=42 Identities=33% Similarity=0.491 Sum_probs=37.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVG 152 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpg 152 (455)
++|..+.|.|++|+|||||+..++..+... +.+++|+|++..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s 113 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHA 113 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCC
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCC
Confidence 689999999999999999999888776666 889999999854
No 279
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.04 E-value=0.0067 Score=56.84 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
..-++|.||+|+||||+++.|++.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3458999999999999999999975
No 280
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.99 E-value=0.0031 Score=55.62 Aligned_cols=26 Identities=42% Similarity=0.611 Sum_probs=18.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
++.+++|+|+.||||||+++.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998764
No 281
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.99 E-value=0.0019 Score=64.44 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCCe
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGT 161 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G~ 161 (455)
+++|+|++|||||||++.|+|..... .. -.+.-.|+..+.+.++|.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~---~~-~~~~T~d~~~~~i~~~g~ 226 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKV---DT-KLFTTMSPKRYAIPINNR 226 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC---------------CCSCEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc---cC-CcccccCCEEEEEEECCE
Confidence 49999999999999999999865321 11 112234666677777664
No 282
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.97 E-value=0.0071 Score=59.87 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=24.6
Q ss_pred CCCCE--EEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 108 KRGPI--TMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 108 ~~G~~--v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
.+|++ ++|+|++||||||++++|++.+.
T Consensus 20 ~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 20 EDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 46666 99999999999999999999763
No 283
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.94 E-value=0.007 Score=59.06 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=38.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCc
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGH 155 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~ 155 (455)
.-++++|.|.=|.||||++--|+-.+... |++|++||+||....
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~---GkkVllID~Dpq~~s 90 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSIL---GKRVLQIGCDPKHDS 90 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEESSSCCT
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHC---CCeEEEEecCCCCcc
Confidence 45699999999999999999998888888 999999999996543
No 284
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.94 E-value=0.0024 Score=61.94 Aligned_cols=25 Identities=44% Similarity=0.476 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
++.+++|+|++|+|||||++.|+|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4458999999999999999999975
No 285
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.93 E-value=0.004 Score=56.05 Aligned_cols=21 Identities=43% Similarity=0.588 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy2946 113 TMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 113 v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+.|+||+|||||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999999865
No 286
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.92 E-value=0.0057 Score=55.05 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
..+-+++|+|+.||||||+++.|+..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 455689999999999999999999864
No 287
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.92 E-value=0.0046 Score=56.25 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+++|+|+.||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998754
No 288
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.88 E-value=0.009 Score=58.21 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=33.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 107 SKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 107 ~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
..+|+.+.|.|++|+|||||+..++...... +.+++|+.++
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~~vl~~slE 105 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE 105 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTT---TCEEEEEESS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEECC
Confidence 3899999999999999999999988665544 5566666655
No 289
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.86 E-value=0.0059 Score=53.38 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhc
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVR 136 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~ 136 (455)
.+..++|.||.|+||||+++.++..+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567899999999999999999998754
No 290
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.81 E-value=0.0049 Score=56.47 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+.+++|+|+.||||||+++.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999865
No 291
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.80 E-value=0.005 Score=56.70 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
++.+++|+|+.||||||+++.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56799999999999999999999753
No 292
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.79 E-value=0.0049 Score=56.07 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
...+|+|+|||||||++..|.-.+.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999875543
No 293
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.79 E-value=0.0075 Score=55.72 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=32.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHH-HHHhcCCCCCCccEEEecCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILL-NYAVRMPGLNRKPIFVDLDVG 152 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~-~~~~~~~~~~~~~~~vDlDpg 152 (455)
++|..+.|.|++|+|||||+.-++ +.+... +..++|+.++-.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~---~~~v~~~s~E~~ 70 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTLEER 70 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHH---CCCEEEEESSSC
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc---CCCceeecccCC
Confidence 689999999999999999987654 555554 677778777643
No 294
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.75 E-value=0.0048 Score=57.22 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
...+++|+|++|+|||||++.|+|...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 335899999999999999999998543
No 295
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.75 E-value=0.01 Score=58.69 Aligned_cols=36 Identities=11% Similarity=0.200 Sum_probs=28.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEec
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDL 149 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDl 149 (455)
.++|.||+|+|||||++.+++.+.... +..++++++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~i~~ 81 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKT--TARFVYING 81 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSC--CCEEEEEET
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhc--CeeEEEEeC
Confidence 899999999999999999999876430 134555554
No 296
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.74 E-value=0.0053 Score=55.89 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+++|+|+.||||||+++.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999865
No 297
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=95.74 E-value=0.0023 Score=55.45 Aligned_cols=34 Identities=15% Similarity=-0.022 Sum_probs=29.6
Q ss_pred ecCCCccCCcHHHHHHHH------HHcCCCEEEEecCchh
Q psy2946 228 NTCGWIKGDGFKCLMACA------KSLRVDNILVLDQERL 261 (455)
Q Consensus 228 nt~g~~~s~G~~q~~~ia------~al~~~~~vll~DEpl 261 (455)
+.+...+|+||+||++|| +++..+|.++|+|||+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt 91 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPT 91 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCS
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCC
Confidence 456667889999999876 8999999999999997
No 298
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.71 E-value=0.0057 Score=55.04 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
...+++|+|+.||||||+++.|+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999999999975
No 299
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.70 E-value=0.0085 Score=58.22 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHh-cCCCCCCccEEEec
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAV-RMPGLNRKPIFVDL 149 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~-~~~~~~~~~~~vDl 149 (455)
+..+.|.||.|+|||+|++.|++.+. .. +..+.|+.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~---g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK---GVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS---CCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc---CCcEEEEEH
Confidence 67899999999999999999999988 76 777777665
No 300
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.70 E-value=0.0062 Score=52.24 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|+.|+|||||++.|++-
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 37899999999999999999874
No 301
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.69 E-value=0.0056 Score=52.16 Aligned_cols=23 Identities=43% Similarity=0.567 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
++++|+|+.|+|||||++.|++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 302
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.68 E-value=0.0068 Score=58.06 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLN 132 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~ 132 (455)
..+++|+|+.||||||+++.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999995
No 303
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.67 E-value=0.0071 Score=52.54 Aligned_cols=26 Identities=35% Similarity=0.546 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.+..+++|+|+.|+|||||++.|++-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46679999999999999999999874
No 304
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.67 E-value=0.0063 Score=53.84 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
..+++|+|+.||||||+++.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999764
No 305
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.67 E-value=0.0067 Score=56.72 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.++.+++|+|+.||||||+++.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356689999999999999999999754
No 306
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.0078 Score=53.25 Aligned_cols=26 Identities=35% Similarity=0.583 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.....++|+|+.|+|||||++.|++.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999999975
No 307
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.65 E-value=0.0083 Score=59.86 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=38.2
Q ss_pred CCCCEEEEEc-CCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcC
Q psy2946 108 KRGPITMIVG-PQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 108 ~~G~~v~IvG-~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i 156 (455)
.++.+++|.| .-|+||||++-.|+-.+... |.+|++||+| .+|.+
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~---g~rVlliD~D-~~~~l 186 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANM---GKKVFYLNIE-QCGTT 186 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHH---TCCEEEEECC-TTCCH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhC---CCCEEEEECC-CCCCH
Confidence 4567888987 57899999999999888777 9999999999 66654
No 308
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.65 E-value=0.0098 Score=58.16 Aligned_cols=44 Identities=23% Similarity=0.396 Sum_probs=36.6
Q ss_pred CC-C-EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcC
Q psy2946 109 RG-P-ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 109 ~G-~-~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i 156 (455)
+| . ++..-|.-|+||||++-.|+-.+... |.+|++||+|| ++++
T Consensus 11 ~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~---G~rVLlvD~D~-~~~l 56 (324)
T 3zq6_A 11 KGKTTFVFIGGKGGVGKTTISAATALWMARS---GKKTLVISTDP-AHSL 56 (324)
T ss_dssp TTBCEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEECCS-SCCH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHHHC---CCcEEEEeCCC-CcCH
Confidence 45 4 45566778999999999999988888 99999999999 6643
No 309
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.64 E-value=0.0051 Score=66.27 Aligned_cols=28 Identities=29% Similarity=0.246 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
.++..++|+|++|+|||||++.|++...
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence 4788999999999999999999998754
No 310
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.64 E-value=0.009 Score=58.83 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=27.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCC
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVG 152 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpg 152 (455)
..++|+||+|||||||++.|+..+ + ..+++.|--
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l------~--~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF------N--GEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT------T--EEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc------C--Cceeccccc
Confidence 479999999999999999999864 2 456777754
No 311
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.62 E-value=0.011 Score=54.30 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEE
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFV 147 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~v 147 (455)
+|..+.|.|+.||||||+++.|...+... +..+...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~---~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRER---GIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHc---CCCcccc
Confidence 57899999999999999999999998766 6666544
No 312
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.61 E-value=0.011 Score=52.99 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
+.++|.||.|+||||+++.++..+...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 349999999999999999999876443
No 313
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.61 E-value=0.01 Score=54.06 Aligned_cols=40 Identities=20% Similarity=0.087 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVG 152 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpg 152 (455)
+-.+++|+|..|+|||||++.|++.... ..++..++.|++
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~----~~~~~~i~~d~~ 76 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD----KYKIACIAGDVI 76 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTT----TCCEEEEEEETT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhcc----CCeEEEEECCCC
Confidence 4578999999999999999999987543 356777887775
No 314
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.59 E-value=0.011 Score=57.82 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
++|.++.|.|++|+|||||+..++...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 789999999999999999999998754
No 315
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.57 E-value=0.0095 Score=59.57 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=27.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVR 136 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~ 136 (455)
.+|++++|+|++|+|||||++.|++....
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 78999999999999999999999998754
No 316
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.56 E-value=0.0076 Score=51.44 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.++|+|+.|+|||||++.+++-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998864
No 317
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.54 E-value=0.0077 Score=51.71 Aligned_cols=22 Identities=23% Similarity=0.381 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.++|+|+.|+|||||++.|++-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999999875
No 318
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.53 E-value=0.016 Score=54.53 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
.+.-++|.|++|+|||++++.|.+...+. +...+++|+.
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~---~~~~~~v~~~ 66 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRW---QGPFISLNCA 66 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTT---TSCEEEEEGG
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCcc---CCCeEEEecC
Confidence 45678999999999999999999986544 4445556553
No 319
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.53 E-value=0.0077 Score=51.43 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-.++|+|+.|+|||||++.|++-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999999874
No 320
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.52 E-value=0.0084 Score=55.27 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+..++.|+||.||||+|.++.|+..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 566788999999999999999999864
No 321
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.51 E-value=0.0074 Score=51.37 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+++++|+.|+|||||++.|++.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
No 322
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.51 E-value=0.0028 Score=70.33 Aligned_cols=34 Identities=12% Similarity=-0.010 Sum_probs=29.2
Q ss_pred ecCCCccCCcHHHHHHHHHHcCCCE--EEEecCchh
Q psy2946 228 NTCGWIKGDGFKCLMACAKSLRVDN--ILVLDQERL 261 (455)
Q Consensus 228 nt~g~~~s~G~~q~~~ia~al~~~~--~vll~DEpl 261 (455)
|.+...+|+||+||++||++|..++ +++|+|||+
T Consensus 499 dR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPT 534 (972)
T 2r6f_A 499 SRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPS 534 (972)
T ss_dssp SSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTT
T ss_pred CCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcc
Confidence 4455667889999999999999884 899999995
No 323
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.50 E-value=0.0044 Score=62.33 Aligned_cols=26 Identities=38% Similarity=0.415 Sum_probs=23.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
..+.+++|+|.+|+|||||++.|+|.
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 57889999999999999999999986
No 324
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.50 E-value=0.0081 Score=51.43 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.++|+|+.|+|||||++.|.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 325
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.50 E-value=0.0082 Score=51.63 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|+.|+|||||++.|++-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 37899999999999999999875
No 326
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.49 E-value=0.0086 Score=57.80 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
..+..++|.||+|+|||||++.|++.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 577889999999999999999999974
No 327
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.48 E-value=0.0082 Score=51.45 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.++|+|+.|+|||||++.|++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 328
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.46 E-value=0.014 Score=57.48 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=36.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCC
Q psy2946 107 SKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVG 152 (455)
Q Consensus 107 ~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpg 152 (455)
..+|+.++|.|++|+|||||+..++..+... +..|+|+.++-.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSlEms 85 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSLEMS 85 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEESSSC
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCCC
Confidence 3799999999999999999999998877666 778888777643
No 329
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.46 E-value=0.0086 Score=54.76 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
++.+++|+|+.||||||+++.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999999865
No 330
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.45 E-value=0.0077 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-.++|+|+.|+|||||++.|++-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999999863
No 331
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.45 E-value=0.0079 Score=51.65 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.++|+|+.|+|||||++.|++-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
No 332
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.45 E-value=0.011 Score=58.03 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq 153 (455)
++..++|+||+|||||||.+.|+..+ ..-+||+|--|
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l--------~~eiIs~Ds~q 75 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF--------PLEVINSDKMQ 75 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS--------CEEEEECCSST
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC--------CCcEEcccccc
Confidence 56789999999999999999999753 23467777655
No 333
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.44 E-value=0.0065 Score=57.64 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+++|+|++|||||||++.|+|..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999864
No 334
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.43 E-value=0.015 Score=54.31 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=28.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRK 143 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~ 143 (455)
-+|..+.|.|+.||||||+++.|...+... +..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~---~~~ 57 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQN---GID 57 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHT---TCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCC
Confidence 368899999999999999999999988766 555
No 335
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.43 E-value=0.01 Score=54.98 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=33.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhc-CCCCCCccEEEecCCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVR-MPGLNRKPIFVDLDVG 152 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~-~~~~~~~~~~vDlDpg 152 (455)
.+|..+.|.|..||||||+++.|...+.. . |..+.++--.|+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~---g~~v~~~treP~ 61 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIY---GVNNVVLTREPG 61 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHH---CGGGEEEEESSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcc---CceeeEeeeCCC
Confidence 57889999999999999999999998876 5 666665334454
No 336
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.42 E-value=0.0089 Score=51.96 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
--.++|+|+.|+|||||++.|++.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999999875
No 337
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.41 E-value=0.014 Score=52.17 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=25.7
Q ss_pred CCCEEEEEcCCCCcHHHHH-HHHHHHHhcCCCCCCccEEE
Q psy2946 109 RGPITMIVGPQDVGKSTLC-HILLNYAVRMPGLNRKPIFV 147 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~-r~L~~~~~~~~~~~~~~~~v 147 (455)
+|.++++.|+.|+||||++ +.+.++. .. +.++.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~-~~---g~~v~~~ 37 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK-LG---KKKVAVF 37 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH-HT---TCEEEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH-HC---CCeEEEE
Confidence 4789999999999999998 5555543 33 5556554
No 338
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.40 E-value=0.0092 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-.++|+|+.|+|||||++.|++-
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999999864
No 339
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.39 E-value=0.0096 Score=54.76 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+++|+|+.||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999764
No 340
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.38 E-value=0.0086 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-.++|+|+.|+|||||++.|++.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999975
No 341
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.38 E-value=0.013 Score=58.02 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=36.2
Q ss_pred CCCEEE-EEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcC
Q psy2946 109 RGPITM-IVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 109 ~G~~v~-IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i 156 (455)
++.+++ +.|.-|+||||++-.|+-.+... |++|++||+|| ++++
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~---G~rVLlvD~D~-~~~l 68 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEK---GLKVVIVSTDP-AHSL 68 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHS---SCCEEEEECCT-TCHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHC---CCeEEEEeCCC-CCCH
Confidence 455555 55778999999999999988888 99999999999 5543
No 342
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.38 E-value=0.015 Score=53.74 Aligned_cols=37 Identities=27% Similarity=0.205 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEE
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFV 147 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~v 147 (455)
.+|.++++.|+.|+||||++.-++..+... +.+++++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~---g~kVli~ 46 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA---DVKYLVF 46 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEE
Confidence 478899999999999999888777777666 7888887
No 343
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.37 E-value=0.008 Score=51.98 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-.++|+|+.|+|||||++.|++.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 47899999999999999999864
No 344
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.35 E-value=0.017 Score=52.99 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
+|..+.+.|+.||||||.++.|...+...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999998766
No 345
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.35 E-value=0.0093 Score=54.29 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+++|+|+.||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999999864
No 346
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.35 E-value=0.012 Score=61.05 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHH-HHhcCCCCCCccEEEecCCCCCc
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLN-YAVRMPGLNRKPIFVDLDVGQGH 155 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~-~~~~~~~~~~~~~~vDlDpgqG~ 155 (455)
.+++.++|.|.+||||||++++|.. ++.... ...+-++-.||..++
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~--p~~v~l~liDpK~~e 211 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ--PEDVRFIMIDPKMLE 211 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC--TTTEEEEEECCSSSG
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHhCC--CceEEEEEECCchhh
Confidence 4678999999999999999999886 333220 234555556666543
No 347
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.34 E-value=0.01 Score=58.40 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=26.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
..+..++|.||+|+|||||++.+++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457799999999999999999999987543
No 348
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.32 E-value=0.013 Score=54.24 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
..+..++|+|+.||||||+++.|+..+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999875
No 349
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.32 E-value=0.01 Score=50.90 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.++|+|+.|+|||||++.|++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 350
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.32 E-value=0.011 Score=56.78 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
..++|+|++||||||+++.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999974
No 351
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.32 E-value=0.0097 Score=52.48 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
-+++|+|+.|+|||||++.|.|..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 378999999999999999998754
No 352
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.31 E-value=0.011 Score=57.83 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=27.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq 153 (455)
..++|+||+|||||||++.|+..+ ...++|.|--+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l--------~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL--------PCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS--------CEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc--------CCcEEeccchh
Confidence 478999999999999999999863 23567777543
No 353
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=95.31 E-value=0.0032 Score=69.97 Aligned_cols=34 Identities=9% Similarity=-0.036 Sum_probs=28.2
Q ss_pred ecCCCccCCcHHHHHHHHHHcCCCEE--EEecCchh
Q psy2946 228 NTCGWIKGDGFKCLMACAKSLRVDNI--LVLDQERL 261 (455)
Q Consensus 228 nt~g~~~s~G~~q~~~ia~al~~~~~--vll~DEpl 261 (455)
|.+...+|+||+||++||++|..++. ++|+|||+
T Consensus 459 ~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT 494 (916)
T 3pih_A 459 SRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPT 494 (916)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTT
T ss_pred cCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCc
Confidence 34455677799999999999987665 99999996
No 354
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.30 E-value=0.01 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|+.|+|||||++.|++.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999985
No 355
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.30 E-value=0.01 Score=51.98 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+++|+|+.|+|||||++.|++-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 78999999999999999999753
No 356
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.28 E-value=0.0061 Score=52.30 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+++|+|+.|+|||||++.|+|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 7899999999999999998764
No 357
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.26 E-value=0.01 Score=62.35 Aligned_cols=39 Identities=31% Similarity=0.352 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
.+..+.++|..||||||+++.|...+... |..+.++|.|
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~---G~~~~~ld~D 409 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQAR---GRKVTLLDGD 409 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhc---CCeEEEECch
Confidence 46789999999999999999999877666 6677777765
No 358
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.26 E-value=0.0089 Score=51.42 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+++|+|+.|+|||||++.|++.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999864
No 359
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.24 E-value=0.011 Score=51.98 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|+.|+|||||++.|++-
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999874
No 360
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=95.23 E-value=0.012 Score=59.17 Aligned_cols=45 Identities=18% Similarity=0.153 Sum_probs=36.0
Q ss_pred CCCCEEEEEcC-CCCcHHHHHHHHHHHHh------cCCCCCCccEEEecCCCCCcC
Q psy2946 108 KRGPITMIVGP-QDVGKSTLCHILLNYAV------RMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 108 ~~G~~v~IvG~-nGsGKSTL~r~L~~~~~------~~~~~~~~~~~vDlDpgqG~i 156 (455)
..+.+++|.+. -|+||||++-.|+..+. .. |.+|++||+|| ||.+
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~---g~rVlliD~D~-q~~l 157 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLME---DLRILVIDLDP-QSSA 157 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGG---CCCEEEEEECT-TCHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcC---CCeEEEEeCCC-CCCh
Confidence 45667888855 66999999999998775 35 89999999999 6654
No 361
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.23 E-value=0.01 Score=52.56 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
...+++|+|+.|+|||||++.|++-
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999874
No 362
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.23 E-value=0.011 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+++|+|+.|+|||||++.+++-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 363
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.23 E-value=0.011 Score=52.38 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-.++|+|+.|+|||||++.|++.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 37999999999999999999874
No 364
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.22 E-value=0.017 Score=55.13 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.++..++|.||+|+||||+++.+++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999874
No 365
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.22 E-value=0.011 Score=51.18 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-.++|+|..|+|||||++.|++-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999874
No 366
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.21 E-value=0.0087 Score=61.07 Aligned_cols=24 Identities=46% Similarity=0.552 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+++|+|++|+|||||++.|+|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 389999999999999999999864
No 367
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.21 E-value=0.011 Score=50.76 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+.-+++|+|+.|+|||||++.|.+-
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4458999999999999999999763
No 368
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.17 E-value=0.012 Score=51.44 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|+.|+|||||++.|++-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 47999999999999999999974
No 369
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.17 E-value=0.011 Score=52.11 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.-.+++|+|+.|+|||||++.|++.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999999874
No 370
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.16 E-value=0.024 Score=52.80 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
...-++|.||+|+||||+++.+++.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45578999999999999999999975
No 371
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.16 E-value=0.011 Score=51.19 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-.++|+|+.|+|||||++.|++-
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 37899999999999999999874
No 372
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.16 E-value=0.012 Score=57.33 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
++|.++.|.|++|+|||||+..++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999988864
No 373
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.15 E-value=0.011 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|+.|+|||||++.|++-
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999999864
No 374
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.13 E-value=0.008 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|+.|+|||||++.|++-
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999864
No 375
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.13 E-value=0.012 Score=51.85 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|..|+|||||++.|++-
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 37999999999999999999975
No 376
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.12 E-value=0.019 Score=54.38 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=24.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
..+.-++|.||+|+|||||++.+++.+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 466789999999999999999999874
No 377
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.11 E-value=0.012 Score=51.05 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-.++|+|+.|+|||||++.|++-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 37899999999999999999874
No 378
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.11 E-value=0.011 Score=52.48 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+.-+++|+|++|+|||||++.+++-
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999873
No 379
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.10 E-value=0.018 Score=59.69 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q psy2946 113 TMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 113 v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
++|+||+|+|||||+|+|++.+
T Consensus 67 vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999985
No 380
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.08 E-value=0.014 Score=64.34 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+++.++|+||+|+|||||+|+|++.+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 688899999999999999999999975
No 381
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.06 E-value=0.013 Score=50.91 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|+.|+|||||++.|++-
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999874
No 382
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.06 E-value=0.015 Score=52.50 Aligned_cols=25 Identities=36% Similarity=0.604 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
....++|+|+.|+|||||++.|++.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5579999999999999999999875
No 383
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.04 E-value=0.012 Score=62.10 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCC-CccEEEecC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLN-RKPIFVDLD 150 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~-~~~~~vDlD 150 (455)
+++.++.|.|.+||||||+++.|...+... | ....++|.|
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~---G~~~~~~lD~D 434 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQ---GGRSVSLLLGD 434 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHH---CSSCEEEEEHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhccc---CCceEEEECcH
Confidence 456689999999999999999999887543 4 455666644
No 384
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=95.04 E-value=0.01 Score=59.77 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=29.6
Q ss_pred CCCCEEEEEc-CCCCcHHHHHHHHHHHHh------cCCCCCCccEEEecCCCCCcC
Q psy2946 108 KRGPITMIVG-PQDVGKSTLCHILLNYAV------RMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 108 ~~G~~v~IvG-~nGsGKSTL~r~L~~~~~------~~~~~~~~~~~vDlDpgqG~i 156 (455)
..+.+++|++ .-|+||||++-.|+..+. .. |.+|++||+|| ||.+
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~---g~rVlliD~D~-~~~l 160 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRH---DLRILVIDLDP-QASS 160 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGG---CCCEEEEEESS-SSGG
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcC---CCeEEEEeCCC-CCCh
Confidence 4567788884 467999999999998776 45 89999999999 5554
No 385
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.03 E-value=0.012 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-.++|+|+.|+|||||++.|++-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999875
No 386
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.02 E-value=0.01 Score=52.18 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+++|+|+.|+|||||++.|++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999999864
No 387
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.01 E-value=0.015 Score=61.98 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
+|.++.|+|.+||||||+++.|+..+... |.....+|-|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~---G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCH---GIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEechH
Confidence 66789999999999999999999987655 5555555533
No 388
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.00 E-value=0.014 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|+.|+|||||++.|++.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999999965
No 389
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.00 E-value=0.019 Score=55.91 Aligned_cols=40 Identities=20% Similarity=0.395 Sum_probs=29.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHH-HHHhcCCCCCCccEEEecC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILL-NYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~-~~~~~~~~~~~~~~~vDlD 150 (455)
.+| ++.|.||+|+|||||+-.++ +..... .+.+++|+|..
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g--~g~~vlyId~E 67 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQY--PDAVCLFYDSE 67 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHHHHHC--TTCEEEEEESS
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHHHhcC--CCceEEEEecc
Confidence 788 99999999999999965555 444331 15688888863
No 390
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.00 E-value=0.024 Score=57.93 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=34.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhc-CCCCCCccEEEecC
Q psy2946 107 SKRGPITMIVGPQDVGKSTLCHILLNYAVR-MPGLNRKPIFVDLD 150 (455)
Q Consensus 107 ~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~-~~~~~~~~~~vDlD 150 (455)
..+|+.+.|.|++|+|||||+..++..... . +.+++|+++.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~---g~~vl~~slE 238 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKE---GVGVGIYSLE 238 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---CCCEEEEESS
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 379999999999999999999988876654 4 6678887776
No 391
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.98 E-value=0.013 Score=60.80 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=33.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhc-CCCCC-CccEEEecCC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVR-MPGLN-RKPIFVDLDV 151 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~-~~~~~-~~~~~vDlDp 151 (455)
++|..+.++|.+||||||+.+.|+..+.. . | +.+.|+|.|.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~---g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFG---GGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSC---SCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhh---cCcceEEecCCC
Confidence 46778999999999999999999999864 3 3 4456778776
No 392
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.98 E-value=0.013 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|+.|+|||||++.|++.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999875
No 393
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.97 E-value=0.014 Score=51.53 Aligned_cols=23 Identities=39% Similarity=0.346 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|++|+|||||++.+++-
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999887764
No 394
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.97 E-value=0.012 Score=55.58 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
++++|+|..|||||||++.|+|.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 57999999999999999999875
No 395
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.97 E-value=0.014 Score=51.46 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.++|+|+.|+|||||++.|++..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 79999999999999999998753
No 396
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.95 E-value=0.022 Score=55.45 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
++.++|+||+|||||||++.|+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 468899999999999999999865
No 397
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.94 E-value=0.015 Score=51.44 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+++|+|+.|+|||||++.|++-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999999974
No 398
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.94 E-value=0.013 Score=54.97 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.-+|+|+|.+|+|||||++.|+|.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 348999999999999999999975
No 399
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.93 E-value=0.0087 Score=52.72 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLN 132 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~ 132 (455)
..-.++|+|++|+|||||++.|++
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999875
No 400
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.92 E-value=0.014 Score=51.79 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|+.|+|||||++.|++-
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999875
No 401
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.92 E-value=0.015 Score=50.72 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|+.|+|||||++.+++-
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999999864
No 402
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.92 E-value=0.016 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
++.|+||.||||+|.++.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999764
No 403
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.92 E-value=0.024 Score=54.31 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=25.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRM 137 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~ 137 (455)
..+..++|.||+|+||||+++.+++.+...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 455579999999999999999999987654
No 404
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.92 E-value=0.015 Score=51.92 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.-+++|+|+.|+|||||++.|++..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3479999999999999999998753
No 405
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.90 E-value=0.025 Score=55.56 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=35.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCC
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgq 153 (455)
..++.+.|.-|+||||++-.|+-.+... |.+|++||+||..
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~---g~~vllid~D~~~ 56 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKV---RRSVLLLSTDPAH 56 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTS---SSCEEEEECCSSC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhC---CCcEEEEECCCCC
Confidence 4577778889999999999999888877 9999999999754
No 406
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.89 E-value=0.026 Score=59.71 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=38.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcC
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i 156 (455)
...++.+.|..|+||||++-.|+-.+... |+++++||+|| ++++
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~---G~rVLlvd~D~-~~~l 50 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQ---GKRVLLVSTDP-ASNV 50 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCT-TCCH
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHC---CCcEEEEECCC-CcCH
Confidence 45678888999999999999999988888 99999999999 4553
No 407
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.89 E-value=0.014 Score=51.62 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
-+++|+|+.|+|||||++.|++-.
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 379999999999999999999863
No 408
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.88 E-value=0.015 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-.++|+|+.|+|||||++.|.+-
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999874
No 409
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.88 E-value=0.0083 Score=59.67 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=28.8
Q ss_pred chhhhHHHHHHHHHHHHHHhccCCCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 86 MNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 86 ml~~~nl~~~~~~~r~~a~~~~~~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.+.+.|+...+.+ ..+.++ ..-.++|+|++|+|||||++.|.+.
T Consensus 17 ~v~~~~l~~~~~~--k~~~~~--~~~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 17 YVGFANLPNQVHR--KSVKKG--FEFTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ----CCHHHHHHT--HHHHHC--CEECEEECCCTTSCHHHHHHHHTTC
T ss_pred eEEeccchHHhCC--eeecCC--CCEEEEEEcCCCCCHHHHHHHHhCC
Confidence 3556677777754 223322 1235799999999999999999775
No 410
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.87 E-value=0.021 Score=51.85 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.|..++|+||+|+|||||+..|+..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999998854
No 411
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.86 E-value=0.016 Score=51.10 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|+.|+|||||++.|++-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999999864
No 412
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.85 E-value=0.013 Score=55.91 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.+++|+|++|+|||||++.|+|.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999975
No 413
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.83 E-value=0.027 Score=54.16 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=26.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEec
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDL 149 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDl 149 (455)
..+++.||+|+|||+|++.|++.+ +...+.+++
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~ 69 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM------GINPIMMSA 69 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeH
Confidence 467788999999999999999987 455555553
No 414
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.83 E-value=0.015 Score=51.44 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.-.++|+|+.|+|||||++.|++-
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 348999999999999999999874
No 415
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.80 E-value=0.017 Score=51.16 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+++|+|+.|+|||||++.|++-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999999874
No 416
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.80 E-value=0.015 Score=51.94 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+.-+++|+|..|+|||||++.|++-.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 44589999999999999999999853
No 417
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.79 E-value=0.016 Score=50.57 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.+++|+|+.|+|||||++.|++-
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999854
No 418
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.75 E-value=0.018 Score=50.13 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+.-+++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999864
No 419
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.74 E-value=0.018 Score=50.92 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.-.++|+|+.|+|||||++.|++-
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999874
No 420
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=94.74 E-value=0.015 Score=57.68 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=34.4
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCc
Q psy2946 112 ITMIV-GPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGH 155 (455)
Q Consensus 112 ~v~Iv-G~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~ 155 (455)
+++|. +.-|+||||++-.|+-.+... |.+|++||+||..+.
T Consensus 3 vIav~s~KGGvGKTT~a~nLA~~LA~~---G~rVLlID~D~q~~~ 44 (361)
T 3pg5_A 3 TISFFNNKGGVGKTTLSTNVAHYFALQ---GKRVLYVDCDPQCNA 44 (361)
T ss_dssp EEEBCCSSCCHHHHHHHHHHHHHHHHT---TCCEEEEECCTTCTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhC---CCcEEEEEcCCCCCh
Confidence 56666 456799999999999888877 999999999998553
No 421
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.73 E-value=0.018 Score=50.74 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|+.|+|||||++.|++-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999875
No 422
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.69 E-value=0.033 Score=54.52 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=34.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCc
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGH 155 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~ 155 (455)
.++.+-|.-|+||||++-.|+-.+... |++|.+||+||. ++
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~---G~rVllvD~D~~-~~ 60 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKV---RSSVLLISTDPA-HN 60 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTS---SSCEEEEECCTT-CH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHC---CCeEEEEECCCC-cC
Confidence 455566778999999999999988887 999999999997 43
No 423
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.69 E-value=0.035 Score=54.86 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=35.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHh--cCCCCCCccEEEecCCC
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAV--RMPGLNRKPIFVDLDVG 152 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~--~~~~~~~~~~~vDlDpg 152 (455)
-.++.+.|.-|+||||++-.|+-.+. .. |.+|++||+||.
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~---g~~vllid~D~~ 59 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQP---NEQFLLISTDPA 59 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCT---TSCEEEEECCSS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcC---CCeEEEEECCCC
Confidence 36888889999999999999998887 77 999999999974
No 424
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.68 E-value=0.019 Score=51.03 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+.-.++|+|..|+|||||++.|++-
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3458999999999999999999874
No 425
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.68 E-value=0.017 Score=51.59 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|+.|+|||||++.|++-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999864
No 426
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.67 E-value=0.019 Score=50.90 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.-+++|+|..|+|||||++.+++-.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3489999999999999999998753
No 427
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.67 E-value=0.017 Score=52.01 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|+.|+|||||++.|++-
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 37899999999999999999875
No 428
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.65 E-value=0.0082 Score=52.49 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLN 132 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~ 132 (455)
+.-+++|+|++|+|||||++.|++
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999988763
No 429
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.64 E-value=0.0099 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLN 132 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~ 132 (455)
+.-.++|+|++|+|||||++.|++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 344799999999999999999875
No 430
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.64 E-value=0.019 Score=51.17 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+.-.++|+|+.|+|||||++.|++-
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4458999999999999999999874
No 431
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.62 E-value=0.016 Score=55.88 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.-+.++|+|..|||||||++.|+|.-
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 56799999999999999999999863
No 432
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.61 E-value=0.016 Score=53.54 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.+|+.++++|++||||||++..++-.
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 56899999999999999988876543
No 433
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.61 E-value=0.033 Score=50.38 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhc
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVR 136 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~ 136 (455)
...++|.||.|+|||||++.+++.+..
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 348999999999999999999988754
No 434
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.59 E-value=0.015 Score=50.99 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+.-+++|+|+.|+|||||++.+++-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998864
No 435
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.59 E-value=0.018 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
-.++|+|+.|+|||||++.|.+-.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998753
No 436
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.59 E-value=0.02 Score=50.99 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|.+|+|||||++.+++.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999874
No 437
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.57 E-value=0.033 Score=53.17 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+.-++|.||+|+||||+++.++..+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999999986
No 438
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.55 E-value=0.021 Score=50.44 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|..|+|||||++.+++-
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 47999999999999999998874
No 439
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.55 E-value=0.017 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLN 132 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~ 132 (455)
+.-+++|+|..|+|||||++.|++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 556899999999999999999985
No 440
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.52 E-value=0.057 Score=55.65 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.-++|+||+|+|||||+|.+++..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 348999999999999999999975
No 441
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.52 E-value=0.016 Score=50.34 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|..|+|||||++.+++-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999999874
No 442
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.51 E-value=0.023 Score=52.74 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
.+|..+.|.|+.||||||+++.|+..+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999998764
No 443
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.50 E-value=0.021 Score=51.13 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
..-.++|+|+.|+|||||++.|++-
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4468999999999999999999864
No 444
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.50 E-value=0.02 Score=52.00 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+.+++|+|+.||||||+++.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999999863
No 445
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.49 E-value=0.016 Score=50.86 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+.-+++|+|..|+|||||++.|++-
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 4458999999999999999999863
No 446
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.49 E-value=0.042 Score=53.06 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=30.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecC
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlD 150 (455)
..+..++|.|++|+|||++++.|.+...+. +...+.+|+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~---~~~~v~v~~~ 62 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARS---DRPLVTLNCA 62 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCS---SSCCCEEECS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCccc---CCCeEEEeCC
Confidence 345678999999999999999999976544 4444555543
No 447
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.48 E-value=0.017 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-.++|+|+.|+|||||++.|++-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47999999999999999999864
No 448
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.47 E-value=0.021 Score=51.36 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|..|+|||||++.|++-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 48999999999999999999974
No 449
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.47 E-value=0.02 Score=51.64 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.-+++|+|+.|+|||||++.|++.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999985
No 450
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.46 E-value=0.016 Score=57.42 Aligned_cols=25 Identities=40% Similarity=0.498 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
...+++|+|++|+|||||++.|++.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5568999999999999999999864
No 451
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.43 E-value=0.028 Score=58.67 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhc
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAVR 136 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~~ 136 (455)
....++++|.+||||||+++.|+..+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3458899999999999999999987643
No 452
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.43 E-value=0.038 Score=52.22 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.-+++++|..|+|||||++.|++.
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999864
No 453
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.43 E-value=0.021 Score=57.90 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
....++|+|++||||||+++.|+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999864
No 454
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.38 E-value=0.024 Score=56.27 Aligned_cols=24 Identities=46% Similarity=0.462 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+..++|+|.+|+|||||++.|++.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999984
No 455
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.38 E-value=0.015 Score=55.31 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.++|+|.+|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998764
No 456
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.37 E-value=0.013 Score=52.43 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-.++|+|.+|+|||||++.+++.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999998754
No 457
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.37 E-value=0.016 Score=51.54 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.++|+|..|+|||||++.|++-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 458
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.36 E-value=0.019 Score=51.10 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+.-+++|+|..|+|||||++.+.|.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999988774
No 459
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.35 E-value=0.06 Score=52.86 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
.++..++|.||+|+||||+++.+++.+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4467899999999999999999999874
No 460
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.34 E-value=0.02 Score=53.63 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+.-+++|+|..|+|||||++.|++.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999975
No 461
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.33 E-value=0.021 Score=55.24 Aligned_cols=23 Identities=48% Similarity=0.583 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.+++|+|.+|+|||||++.|+|.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999975
No 462
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.33 E-value=0.035 Score=53.84 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
....++|+||+|||||||++.|+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 34578999999999999999998763
No 463
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.31 E-value=0.012 Score=53.49 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
...+++|+|..|+|||||++.|++.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999864
No 464
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.29 E-value=0.024 Score=50.71 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|..|+|||||++.+++-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999999874
No 465
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.29 E-value=0.022 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
..++|+|..|+|||||++.|+|.
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 47899999999999999999874
No 466
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.28 E-value=0.022 Score=51.46 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|+.|+|||||++.|++.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 37999999999999999998863
No 467
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.27 E-value=0.043 Score=49.36 Aligned_cols=38 Identities=26% Similarity=0.225 Sum_probs=31.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEe
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVD 148 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vD 148 (455)
.+|.+..+.|+.||||||.+--++..+... +.++.++-
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~---g~kV~v~k 43 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIA---KQKIQVFK 43 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEE
Confidence 468899999999999998887777766655 78888774
No 468
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.27 E-value=0.015 Score=50.76 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=9.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-.++|+|+.|+|||||++.|++-
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999999864
No 469
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.26 E-value=0.014 Score=51.62 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
+.-+++|+|..|+|||||++.|++..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999998754
No 470
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.25 E-value=0.028 Score=51.41 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=30.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCCcCCCCC
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG~i~~~G 160 (455)
-.++|+|.-||||||++++|..+ | .-++|+|--.-++.-+|
T Consensus 10 ~~iglTGgigsGKStv~~~l~~~-------g--~~vidaD~ia~~l~~~~ 50 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAAR-------G--ASLVDTDLIAHRITAPA 50 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHT-------T--CEEEEHHHHHHHHTSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-------C--CcEEECcHHHHHHhcCC
Confidence 47899999999999999999873 3 34678876444444344
No 471
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.24 E-value=0.022 Score=50.65 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
..-.++|+|..|+|||||++.+++-.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45589999999999999999998643
No 472
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.24 E-value=0.037 Score=56.57 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=36.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCCCCC
Q psy2946 107 SKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQG 154 (455)
Q Consensus 107 ~~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDpgqG 154 (455)
..+|+.+.|.|++|+|||||+.-++...... |.+++|+.++-...
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEms~~ 238 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEMGKK 238 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSSCTT
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCCCHH
Confidence 3799999999999999999998888776665 77888887765443
No 473
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.23 E-value=0.018 Score=56.20 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
+.++|.||+|+||||+++.+++.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3499999999999999999999864
No 474
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.23 E-value=0.028 Score=50.60 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+..+++|+|+.|+|||||++.|++-
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999874
No 475
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.23 E-value=0.018 Score=50.96 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
...+++|+|..|+|||||++.|++-
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998864
No 476
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.22 E-value=0.026 Score=49.93 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.++|+|+.|+|||||++.|++-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999975
No 477
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.20 E-value=0.023 Score=55.04 Aligned_cols=23 Identities=48% Similarity=0.547 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
..|+|+|..|+|||||++.|+|.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999975
No 478
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.18 E-value=0.024 Score=54.10 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
..+.++|+|..|+|||||++.|+|.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 5579999999999999999999975
No 479
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.16 E-value=0.021 Score=52.32 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
...+++|+|+.|+|||||++.|++.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998864
No 480
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.16 E-value=0.024 Score=52.53 Aligned_cols=25 Identities=32% Similarity=0.278 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
|..++|.|..||||||+++.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999999875
No 481
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.14 E-value=0.035 Score=50.99 Aligned_cols=27 Identities=37% Similarity=0.637 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
+|..+.+.|+.||||||+++.|...+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999999999863
No 482
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.14 E-value=0.022 Score=51.55 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-.++|+|+.|+|||||++.|++-
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 483
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=94.14 E-value=0.046 Score=54.11 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=34.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHh--cCCCCCCccEEEecCCCCCcC
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNYAV--RMPGLNRKPIFVDLDVGQGHV 156 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~~~--~~~~~~~~~~~vDlDpgqG~i 156 (455)
.++..-|.-|.||||++-.|+-.+. .. |++|++||+|+. +++
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~---G~rVLLvD~D~~-~~l 62 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQP---NKQFLLISTDPA-HNL 62 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCT---TSCEEEEECCSS-CCH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcC---CCeEEEEECCCC-CCH
Confidence 3555567789999999999998887 77 999999999995 653
No 484
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=94.12 E-value=0.034 Score=56.36 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=31.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEec
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDL 149 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDl 149 (455)
..-++|+|++||||||+++.++..+... +..++++|.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~---g~~viv~Dp 89 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLR---GDRMVIVDP 89 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHT---TCEEEEEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEeC
Confidence 4578999999999999998888777766 778888775
No 485
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.10 E-value=0.048 Score=49.23 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEE
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFV 147 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~v 147 (455)
.+.|=|.-||||||.++.|...+... |..+.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~---g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR---GKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEE
Confidence 46788999999999999999999877 6666654
No 486
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.09 E-value=0.029 Score=50.06 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=25.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEecCC
Q psy2946 113 TMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDV 151 (455)
Q Consensus 113 v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDlDp 151 (455)
++|+|+.|||||||+.-|+.. +.+++|++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-------~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-------APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-------CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-------CCCeEEEecCC
Confidence 789999999999999988743 34678887743
No 487
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.05 E-value=0.05 Score=55.47 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhc
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAVR 136 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~~ 136 (455)
+..++|.||+|+|||||++.|++.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 567999999999999999999998754
No 488
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.04 E-value=0.029 Score=50.24 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-+++|+|..|+|||||++.|.+-
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 47999999999999999999864
No 489
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.02 E-value=0.025 Score=53.77 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
..++|+|..|||||||++.|+|.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999875
No 490
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.01 E-value=0.018 Score=56.23 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=30.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhcCCCCCCccEEEec
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDL 149 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~~~~~~~~~~~~~vDl 149 (455)
.+|..++|.||.|+|||||+..++.. . +.++.|+++
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~---~---G~~VlyIs~ 156 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEA---L---GGKDKYATV 156 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHH---H---HTTSCCEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh---C---CCCEEEEEe
Confidence 57778899999999999999999875 3 667778777
No 491
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.97 E-value=0.05 Score=49.46 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHh
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYAV 135 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~~ 135 (455)
|..++|=|.-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45788999999999999999999874
No 492
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.96 E-value=0.036 Score=51.44 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.-+.+|+|+.||||||+++.|+..+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999864
No 493
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.94 E-value=0.031 Score=50.22 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
+.-+++|+|..|+|||||++.+++-
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 4458999999999999999999864
No 494
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.94 E-value=0.051 Score=52.77 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.+..-++|.||+|+|||+|++.+++.+
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 345679999999999999999999875
No 495
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.87 E-value=0.031 Score=55.72 Aligned_cols=23 Identities=43% Similarity=0.456 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 112 ITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 112 ~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.++|+|.+|+|||||++.|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999874
No 496
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.86 E-value=0.035 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 111 PITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 111 ~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
-.++|+|+.|+|||||++.|++.
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 37899999999999999999875
No 497
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.84 E-value=0.022 Score=50.70 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q psy2946 109 RGPITMIVGPQDVGKSTLCHILLN 132 (455)
Q Consensus 109 ~G~~v~IvG~nGsGKSTL~r~L~~ 132 (455)
+.-+++|+|+.|+|||||++.+++
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999998864
No 498
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.79 E-value=0.055 Score=50.97 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=23.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy2946 108 KRGPITMIVGPQDVGKSTLCHILLNYA 134 (455)
Q Consensus 108 ~~G~~v~IvG~nGsGKSTL~r~L~~~~ 134 (455)
.....++|.||+|+||||+++.+++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345578999999999999999999874
No 499
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.77 E-value=0.058 Score=50.74 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.-+++|+|..|+|||||++.|++.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999974
No 500
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.76 E-value=0.037 Score=50.16 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q psy2946 110 GPITMIVGPQDVGKSTLCHILLNY 133 (455)
Q Consensus 110 G~~v~IvG~nGsGKSTL~r~L~~~ 133 (455)
.-+++|+|..|+|||||++.|++-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 458999999999999999999875
Done!