Your job contains 1 sequence.
>psy2946
MATLGPDDQTFELKQDQELRFEVENAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAV
YTWHGCSITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQD
VGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQL
APIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKC
LMACAKSLRVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRI
KEYFYGSRLKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPGPS
LLHHLLALSFATTESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLILTDIQY
MDRLHQWVYSVPAGLSRSYGPPTGKISCSSSLFLA
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2946
(455 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NA64 - symbol:CLP1 "Polyribonucleotide 5'-hyd... 1103 9.7e-112 1
FB|FBgn0033842 - symbol:cbc "crowded by cid" species:7227... 1102 1.2e-111 1
UNIPROTKB|B3NRK6 - symbol:cbc "Protein CLP1 homolog" spec... 1102 1.2e-111 1
UNIPROTKB|B4HQJ2 - symbol:cbc "Protein CLP1 homolog" spec... 1101 1.6e-111 1
UNIPROTKB|B4QEE3 - symbol:cbc "Protein CLP1 homolog" spec... 1101 1.6e-111 1
UNIPROTKB|Q5ZJL4 - symbol:CLP1 "Polyribonucleotide 5'-hyd... 1100 2.0e-111 1
UNIPROTKB|Q92989 - symbol:CLP1 "Polyribonucleotide 5'-hyd... 1099 2.6e-111 1
UNIPROTKB|B4P4H2 - symbol:cbc "Protein CLP1 homolog" spec... 1099 2.6e-111 1
UNIPROTKB|Q4R7R3 - symbol:CLP1 "Polyribonucleotide 5'-hyd... 1099 2.6e-111 1
UNIPROTKB|A2VE01 - symbol:CLP1 "Polyribonucleotide 5'-hyd... 1098 3.3e-111 1
UNIPROTKB|E2R321 - symbol:CLP1 "Uncharacterized protein" ... 1098 3.3e-111 1
UNIPROTKB|F2Z5N4 - symbol:CLP1 "Uncharacterized protein" ... 1098 3.3e-111 1
UNIPROTKB|B3MGZ0 - symbol:cbc "Protein CLP1 homolog" spec... 1097 4.2e-111 1
UNIPROTKB|B4GGT6 - symbol:cbc "Protein CLP1 homolog" spec... 1096 5.3e-111 1
UNIPROTKB|Q28ZT4 - symbol:cbc "Protein CLP1 homolog" spec... 1096 5.3e-111 1
MGI|MGI:2138968 - symbol:Clp1 "CLP1, cleavage and polyade... 1094 8.7e-111 1
RGD|1307679 - symbol:Clp1 "cleavage and polyadenylation f... 1094 8.7e-111 1
UNIPROTKB|B4JVN0 - symbol:cbc "Protein CLP1 homolog" spec... 1087 4.8e-110 1
UNIPROTKB|B4MCL6 - symbol:cbc "Protein CLP1 homolog" spec... 1087 4.8e-110 1
UNIPROTKB|B4KML2 - symbol:cbc "Protein CLP1 homolog" spec... 1084 1.0e-109 1
UNIPROTKB|B4MRZ9 - symbol:cbc "Protein CLP1 homolog" spec... 1072 1.9e-108 1
UNIPROTKB|Q66JK4 - symbol:clp1 "Polyribonucleotide 5'-hyd... 1061 2.7e-107 1
UNIPROTKB|Q6NS21 - symbol:clp1 "Polyribonucleotide 5'-hyd... 1061 2.7e-107 1
WB|WBGene00010304 - symbol:clpf-1 species:6239 "Caenorhab... 882 2.5e-88 1
TAIR|locus:2084938 - symbol:CLPS3 "CLP-similar protein 3"... 660 8.5e-65 1
DICTYBASE|DDB_G0285507 - symbol:clp1 "pre-mRNA cleavage c... 636 3.0e-62 1
TAIR|locus:2178072 - symbol:CLPS5 "CLP1-similar protein 5... 524 2.2e-50 1
POMBASE|SPAC22H10.05c - symbol:SPAC22H10.05c "mRNA cleava... 330 1.7e-34 2
ASPGD|ASPL0000054763 - symbol:AN0161 species:162425 "Emer... 278 4.8e-33 3
SGD|S000005776 - symbol:CLP1 "Component of the cleavage a... 317 9.3e-28 1
UNIPROTKB|A4QQE0 - symbol:CLP1 "Protein CLP1" species:242... 272 2.1e-21 1
CGD|CAL0000231 - symbol:orf19.6931 species:5476 "Candida ... 248 1.3e-19 2
UNIPROTKB|Q59ST8 - symbol:CLP1 "Protein CLP1" species:237... 248 1.3e-19 2
UNIPROTKB|Q4IR18 - symbol:GRC3 "Polynucleotide 5'-hydroxy... 143 2.0e-06 1
UNIPROTKB|G3V7B0 - symbol:Nol9 "Protein Nol9" species:101... 142 2.6e-06 1
CGD|CAL0001772 - symbol:orf19.721 species:5476 "Candida a... 136 1.1e-05 1
UNIPROTKB|Q59U11 - symbol:GRC3 "Polynucleotide 5'-hydroxy... 136 1.1e-05 1
UNIPROTKB|E1BPN0 - symbol:NOL9 "Polynucleotide 5'-hydroxy... 136 1.1e-05 1
UNIPROTKB|Q5SY16 - symbol:NOL9 "Polynucleotide 5'-hydroxy... 132 3.1e-05 1
UNIPROTKB|I3LBV6 - symbol:NOL9 "Uncharacterized protein" ... 131 3.9e-05 1
MGI|MGI:1921285 - symbol:Nol9 "nucleolar protein 9" speci... 130 5.3e-05 1
TAIR|locus:2183830 - symbol:AT5G11010 species:3702 "Arabi... 124 8.7e-05 1
UNIPROTKB|Q6BQV7 - symbol:GRC3 "Polynucleotide 5'-hydroxy... 126 0.00014 1
POMBASE|SPCC830.03 - symbol:grc3 "polynucleotide kinase G... 121 0.00053 1
SGD|S000003958 - symbol:GRC3 "Polynucleotide kinase prese... 119 0.00071 1
>UNIPROTKB|F1NA64 [details] [associations]
symbol:CLP1 "Polyribonucleotide 5'-hydroxyl-kinase Clp1"
species:9031 "Gallus gallus" [GO:0000214 "tRNA-intron endonuclease
complex" evidence=IEA] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=IEA] [GO:0030423
"targeting of mRNA for destruction involved in RNA interference"
evidence=IEA] [GO:0035087 "siRNA loading onto RISC involved in RNA
interference" evidence=IEA] [GO:0051733 "polydeoxyribonucleotide
kinase activity" evidence=IEA] [GO:0051736 "ATP-dependent
polyribonucleotide 5'-hydroxyl-kinase activity" evidence=IEA]
GO:GO:0035087 GO:GO:0030423 GeneTree:ENSGT00390000000344
OMA:GFSVQAP GO:GO:0000214 GO:GO:0051736 GO:GO:0051733 GO:GO:0006388
InterPro:IPR010655 Pfam:PF06807 IPI:IPI00603182 EMBL:AADN02050749
Ensembl:ENSGALT00000011921 Uniprot:F1NA64
Length = 425
Score = 1103 (393.3 bits), Expect = 9.7e-112, P = 9.7e-112
Identities = 215/428 (50%), Positives = 297/428 (69%)
Query: 1 MATLGPDDQT----FELKQDQELRFEVENAQ-IEIEVTSGLAEIFGVELVKSKKYLFPIG 55
MA G D++ FEL+++ ELRFEVE +Q +++E+ +G+AE+FG EL ++KK+ F G
Sbjct: 1 MADDGGDEKKQVAKFELERETELRFEVEASQTVQMELLTGMAEVFGTELTRNKKFTFDAG 60
Query: 56 AKGAVYTWHGCSITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMI 115
AK AV+TWHGC++ + + R + YVSK+TPM Y+N H LE+ R +AE++ +RGP M+
Sbjct: 61 AKVAVFTWHGCTVQL-SGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEREDERGPRVMV 119
Query: 116 VGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIED 175
VGP DVGKST+C +LLNYAVR L R+P FV+LDVGQG VS+PGT+GAL IERPA +E+
Sbjct: 120 VGPTDVGKSTVCRLLLNYAVR---LGRRPTFVELDVGQGSVSIPGTMGALYIERPADVEE 176
Query: 176 GFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKG 235
GFS AP+VY++G TP N++LY RL ++R + + + SG +INTCGW+KG
Sbjct: 177 GFSLQAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKG 236
Query: 236 DGFKCLMACAKSLRVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEA 295
G++ L+ A + VD ++VLDQERLYNEL R+LP VLLPKSGGVV+RS+ FR E
Sbjct: 237 SGYQALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRREC 296
Query: 296 RDKRIKEYFYGSRLKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLV 355
RD RI+EYFYG R F PH+FD+KF +V+IYK+GAP +PDSC+PLG++ + K+V V
Sbjct: 297 RDDRIREYFYGFR-GCFYPHAFDVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPV 355
Query: 356 QPGPXXXXXXXXXXXXXX-ESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLI 414
PG + I E ++ GF+ VT VD+ RQ +VL RPLP + L+
Sbjct: 356 TPGRDMVHHLLSVSMADSPDDNISETSVAGFIVVTGVDLERQVFTVLSPAPRPLPKNFLL 415
Query: 415 LTDIQYMD 422
+ DI++MD
Sbjct: 416 IMDIRFMD 423
>FB|FBgn0033842 [details] [associations]
symbol:cbc "crowded by cid" species:7227 "Drosophila
melanogaster" [GO:0003674 "molecular_function" evidence=ND]
[GO:0022008 "neurogenesis" evidence=IMP] EMBL:AE013599
GO:GO:0005524 GO:GO:0022008 GO:GO:0006397 eggNOG:COG5623
GeneTree:ENSGT00390000000344 KO:K14399 OMA:GFSVQAP GO:GO:0000214
GO:GO:0006388 InterPro:IPR010655 Pfam:PF06807 OrthoDB:EOG4VHHNQ
EMBL:AY061187 RefSeq:NP_610876.1 UniGene:Dm.601
ProteinModelPortal:Q7K284 SMR:Q7K284 STRING:Q7K284 PaxDb:Q7K284
PRIDE:Q7K284 EnsemblMetazoa:FBtr0087701 GeneID:36494
KEGG:dme:Dmel_CG5970 UCSC:CG5970-RA CTD:36494 FlyBase:FBgn0033842
InParanoid:Q7K284 PhylomeDB:Q7K284 GenomeRNAi:36494 NextBio:798847
Bgee:Q7K284 Uniprot:Q7K284
Length = 423
Score = 1102 (393.0 bits), Expect = 1.2e-111, P = 1.2e-111
Identities = 209/422 (49%), Positives = 300/422 (71%)
Query: 7 DDQ--TFELKQDQELRFEVE--NAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYT 62
+DQ + L+ D ELRFE+E +A++ + + SG AE+FG ELVK K+Y F +GAK A++T
Sbjct: 3 EDQGKDYTLESDSELRFEIEQKDAKVLVSLVSGFAELFGTELVKKKQYEFGVGAKVAIFT 62
Query: 63 WHGCSITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVG 122
+ GC + + + + ++ Y+SKETPM Y+N H LE+ R EAE++ + GP+ M+VGP DVG
Sbjct: 63 YQGCVLHV-SGKMDVCYISKETPMVQYVNCHAALEQFRMEAEEKDRYGPVAMVVGPMDVG 121
Query: 123 KSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAP 182
KSTLC ILLNYAVR+ R+P++ DLDVGQG +++ G++ ++IERPA +E+GF++ AP
Sbjct: 122 KSTLCRILLNYAVRV---GRRPLYADLDVGQGSIAISGSVATILIERPANVEEGFAKTAP 178
Query: 183 IVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLM 242
+VY++GH +P+ N LY V ++ + + +N + +T SSG+IINTCGW+KG G+ L+
Sbjct: 179 LVYHFGHKSPSGNSVLYNAVVSKMAEVTLQSLNSNKRTKSSGIIINTCGWVKGSGYAHLL 238
Query: 243 ACAKSLRVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKE 302
AK+ I VLDQERLYNEL+R++PK VVLLPKSGGVV+RS++ R EARD+RIKE
Sbjct: 239 HAAKAYGACAIFVLDQERLYNELLRDVPKGVHVVLLPKSGGVVERSKELRHEARDQRIKE 298
Query: 303 YFYGSRLKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPGPXXX 362
YFYG+ PF P SF++KF ++++YKIGAP LPDSCMP+G+ A + TKVV V P P
Sbjct: 299 YFYGNTRAPFYPFSFEVKFQDLRLYKIGAPPLPDSCMPIGMKAEDNKTKVVAVTPTPALI 358
Query: 363 XXXXXXXXXXX-ESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLIL-TDIQY 420
E +++ N+ GF CVT VDM RQ++ +L Q RPLP + L+L +++Q+
Sbjct: 359 HHVLALSFAESVEDDVIGTNVAGFCCVTEVDMERQAVMLLSPQPRPLPPNALLLWSELQF 418
Query: 421 MD 422
MD
Sbjct: 419 MD 420
>UNIPROTKB|B3NRK6 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7220 "Drosophila
erecta" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 EMBL:CH954179
KO:K14399 GO:GO:0000214 GO:GO:0006388 InterPro:IPR010655
Pfam:PF06807 OrthoDB:EOG4VHHNQ RefSeq:XP_001975758.1
EnsemblMetazoa:FBtr0142542 GeneID:6549640 KEGG:der:Dere_GG22488
FlyBase:FBgn0114659 Uniprot:B3NRK6
Length = 423
Score = 1102 (393.0 bits), Expect = 1.2e-111, P = 1.2e-111
Identities = 209/416 (50%), Positives = 295/416 (70%)
Query: 11 FELKQDQELRFEVEN--AQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSI 68
+ L+ D ELRFE+E+ A++ + + SG AE+FG ELVK K+Y F +GAK A++T+ GC +
Sbjct: 9 YTLEADSELRFEIEHKDAKVLVSLVSGFAELFGTELVKKKQYEFGVGAKVAIFTYQGCVL 68
Query: 69 TMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCH 128
+ + + ++ Y+SKETPM Y+N H LE+ R EAE++ + GP+ M+VGP DVGKSTLC
Sbjct: 69 HV-SGKMDVCYISKETPMVQYVNCHTALEQFRMEAEEKDRHGPVAMVVGPMDVGKSTLCR 127
Query: 129 ILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYG 188
ILLNYAVR+ R+P++ DLDVGQG +++ G + ++IERPA +E+GFS+ AP+VY++G
Sbjct: 128 ILLNYAVRV---GRRPLYADLDVGQGSIAISGNVATILIERPANVEEGFSKTAPLVYHFG 184
Query: 189 HLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSL 248
H +P AN LY V ++ + +N + +T SSG+IINTCGW+KG G+ L+ AK+
Sbjct: 185 HKSPGANSILYNAVVSKMAEVTLHSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHAAKAY 244
Query: 249 RVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSR 308
I VLDQERLYNEL+R++PK VVLLPKSGGVV+RS++ R EARD+R+KEYFYG+
Sbjct: 245 GACAIFVLDQERLYNELLRDVPKGVHVVLLPKSGGVVERSKEQRHEARDQRVKEYFYGNA 304
Query: 309 LKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPGPXXXXXXXXX 368
PF P SF++KF ++++YKIGAP LPDSCMPLG+ A + TKVV V P P
Sbjct: 305 RAPFYPFSFEVKFQDLRLYKIGAPPLPDSCMPLGMKAEDNKTKVVAVTPTPALIHHVLAL 364
Query: 369 XXXXX-ESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLIL-TDIQYMD 422
E +++ N+ GF CVT VDM RQ++ +L Q RPLP + L+L +++Q+MD
Sbjct: 365 SFSESVEDDVIGTNVAGFCCVTEVDMERQAVMLLSPQPRPLPPNALLLWSELQFMD 420
>UNIPROTKB|B4HQJ2 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7238 "Drosophila
sechellia" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 EMBL:CH480816
KO:K14399 GO:GO:0000214 GO:GO:0006388 InterPro:IPR010655
Pfam:PF06807 OrthoDB:EOG4VHHNQ RefSeq:XP_002033714.1
EnsemblMetazoa:FBtr0203260 GeneID:6609009 KEGG:dse:Dsec_GM20275
FlyBase:FBgn0175158 Uniprot:B4HQJ2
Length = 423
Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
Identities = 207/416 (49%), Positives = 297/416 (71%)
Query: 11 FELKQDQELRFEVE--NAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSI 68
+ L+ D ELRFE+E +A++ + + SG AE+FG ELVK K+Y F +GAK A++T+ GC +
Sbjct: 9 YTLESDSELRFEIEQKDAKVLVSLVSGFAELFGTELVKKKQYEFGVGAKVAIFTYQGCVL 68
Query: 69 TMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCH 128
+ + + ++ Y+SKETPM Y+N H LE+ R EAE++ + GP+ M+VGP DVGKSTLC
Sbjct: 69 HV-SGKMDVCYISKETPMVQYVNCHAALEQFRMEAEEKDRYGPVAMVVGPMDVGKSTLCR 127
Query: 129 ILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYG 188
ILLNYAVR+ R+P++ DLDVGQG +++ G++ ++IERPA +E+GF++ AP+VY++G
Sbjct: 128 ILLNYAVRV---GRRPLYADLDVGQGSIAISGSVATILIERPANVEEGFAKTAPLVYHFG 184
Query: 189 HLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSL 248
H +P+ N LY V ++ + + +N + +T SSG+IINTCGW+KG G+ L+ AK+
Sbjct: 185 HKSPSGNSVLYNAVVSKMAEVTLQSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHAAKAY 244
Query: 249 RVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSR 308
I VLDQERLYNEL+R++PK VVLLPKSGGVV+RS++ R EARD+RIKEYFYG+
Sbjct: 245 GACAIFVLDQERLYNELLRDVPKEVHVVLLPKSGGVVERSKELRHEARDQRIKEYFYGNA 304
Query: 309 LKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPGPXXXXXXXXX 368
PF P SF++KF ++++YKIGAP LPDSCMP+G+ A + TKVV V P P
Sbjct: 305 RAPFYPFSFEVKFQDLRLYKIGAPPLPDSCMPIGMKAEDNKTKVVAVTPTPALIHHVLAL 364
Query: 369 XXXXX-ESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLIL-TDIQYMD 422
E +++ N+ GF CVT VDM RQ++ +L Q RPLP + L+L +++Q+MD
Sbjct: 365 SFAESVEDDVIGTNVAGFCCVTEVDMERQAVMLLSPQPRPLPPNALLLWSELQFMD 420
>UNIPROTKB|B4QEE3 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7240 "Drosophila
simulans" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 EMBL:CM000362
KO:K14399 GO:GO:0000214 GO:GO:0006388 InterPro:IPR010655
Pfam:PF06807 OrthoDB:EOG4VHHNQ RefSeq:XP_002081348.1
EnsemblMetazoa:FBtr0225667 GeneID:6734325 KEGG:dsi:Dsim_GD25757
FlyBase:FBgn0197038 Uniprot:B4QEE3
Length = 423
Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
Identities = 207/416 (49%), Positives = 297/416 (71%)
Query: 11 FELKQDQELRFEVE--NAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSI 68
+ L+ D ELRFE+E +A++ + + SG AE+FG ELVK K+Y F +GAK A++T+ GC +
Sbjct: 9 YTLESDSELRFEIEQKDAKVLVSLVSGFAELFGTELVKKKQYEFGVGAKVAIFTYQGCVL 68
Query: 69 TMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCH 128
+ + + ++ Y+SKETPM Y+N H LE+ R EAE++ + GP+ M+VGP DVGKSTLC
Sbjct: 69 HV-SGKMDVCYISKETPMVQYVNCHAALEQFRMEAEEKDRYGPVAMVVGPMDVGKSTLCR 127
Query: 129 ILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYG 188
ILLNYAVR+ R+P++ DLDVGQG +++ G++ ++IERPA +E+GF++ AP+VY++G
Sbjct: 128 ILLNYAVRV---GRRPLYADLDVGQGSIAISGSVATILIERPANVEEGFAKTAPLVYHFG 184
Query: 189 HLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSL 248
H +P+ N LY V ++ + + +N + +T SSG+IINTCGW+KG G+ L+ AK+
Sbjct: 185 HKSPSGNSVLYNAVVSKMAEVTLQSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHAAKAY 244
Query: 249 RVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSR 308
I VLDQERLYNEL+R++PK VVLLPKSGGVV+RS++ R EARD+RIKEYFYG+
Sbjct: 245 GACAIFVLDQERLYNELLRDVPKGVHVVLLPKSGGVVERSKELRHEARDQRIKEYFYGNT 304
Query: 309 LKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPGPXXXXXXXXX 368
PF P SF++KF ++++YKIGAP LPDSCMP+G+ A + TKVV V P P
Sbjct: 305 RAPFYPFSFEVKFQDLRLYKIGAPPLPDSCMPIGMKAEDNKTKVVAVTPTPALIHHVLAL 364
Query: 369 XXXXX-ESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLIL-TDIQYMD 422
E +++ N+ GF CVT VDM RQ++ +L Q RPLP + L+L +++Q+MD
Sbjct: 365 SFAESVEDDVIGTNVAGFCCVTEVDMERQAVMLLSPQPRPLPPNALLLWSELQFMD 420
>UNIPROTKB|Q5ZJL4 [details] [associations]
symbol:CLP1 "Polyribonucleotide 5'-hydroxyl-kinase Clp1"
species:9031 "Gallus gallus" [GO:0046404 "ATP-dependent
polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0051733 "polydeoxyribonucleotide
kinase activity" evidence=ISS] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=ISS] [GO:0000214
"tRNA-intron endonuclease complex" evidence=ISS] [GO:0051736
"ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity"
evidence=ISS] [GO:0035087 "siRNA loading onto RISC involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS]
GO:GO:0005524 GO:GO:0006397 GO:GO:0035087 GO:GO:0030423 CTD:10978
eggNOG:COG5623 HOGENOM:HOG000231935 KO:K14399 OrthoDB:EOG4K0QNF
GO:GO:0000214 GO:GO:0046404 GO:GO:0051736 GO:GO:0051733
GO:GO:0006388 InterPro:IPR010655 Pfam:PF06807 EMBL:AJ720420
IPI:IPI00603182 RefSeq:NP_001012292.1 UniGene:Gga.2011
ProteinModelPortal:Q5ZJL4 STRING:Q5ZJL4 GeneID:423131
KEGG:gga:423131 InParanoid:Q5ZJL4 NextBio:20825645 Uniprot:Q5ZJL4
Length = 425
Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
Identities = 215/428 (50%), Positives = 297/428 (69%)
Query: 1 MATLGPDDQT----FELKQDQELRFEVENAQ-IEIEVTSGLAEIFGVELVKSKKYLFPIG 55
MA G D++ FEL+++ ELRFEVE +Q +++E+ +G+AE+FG EL ++KK+ F G
Sbjct: 1 MADDGGDEKKQVAKFELERETELRFEVEASQTVQMELLTGMAEVFGTELTRNKKFTFDAG 60
Query: 56 AKGAVYTWHGCSITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMI 115
AK AV+TWHGC++ + + R + YVSK+TPM Y+N H LE+ R +AE++ +RGP M+
Sbjct: 61 AKVAVFTWHGCTVQL-SGRTEVAYVSKDTPMLLYLNTHTALEQIRRQAEREDERGPRVMV 119
Query: 116 VGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIED 175
VGP DVGKST+C +LLNYAVR L R+P FV+LDVGQG VS+PGT+GAL IERPA +E+
Sbjct: 120 VGPTDVGKSTVCRLLLNYAVR---LGRRPTFVELDVGQGSVSIPGTMGALYIERPADVEE 176
Query: 176 GFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKG 235
GFS AP+VY++G TP N++LY RL ++R + + + SG +INTCGW+KG
Sbjct: 177 GFSLQAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKG 236
Query: 236 DGFKCLMACAKSLRVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEA 295
G++ L+ A + VD ++VLDQERLYNEL R+LP VLLPKSGGVV+RS+ FR E
Sbjct: 237 SGYQALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRREC 296
Query: 296 RDKRIKEYFYGSRLKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLV 355
RD RI+EYFYG R F PH+FD+KF +V+IYK+GAP +PDSC+PLG++ + K+V V
Sbjct: 297 RDDRIREYFYGFR-GCFYPHAFDVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPV 355
Query: 356 QPGPXXXXXXXXXXXXXX-ESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLI 414
PG + I E ++ GF+ VT VD+ RQ +VL RPLP + L+
Sbjct: 356 TPGRDMVHHLLSVSMADSPDDNISETSVAGFIVVTGVDLERQVFTVLSPAPRPLPKNFLL 415
Query: 415 LTDIQYMD 422
+ DI++MD
Sbjct: 416 IMDIRFMD 423
>UNIPROTKB|Q92989 [details] [associations]
symbol:CLP1 "Polyribonucleotide 5'-hydroxyl-kinase Clp1"
species:9606 "Homo sapiens" [GO:0046404 "ATP-dependent
polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=IEA]
[GO:0000214 "tRNA-intron endonuclease complex" evidence=IDA]
[GO:0051733 "polydeoxyribonucleotide kinase activity" evidence=IDA]
[GO:0051736 "ATP-dependent polyribonucleotide 5'-hydroxyl-kinase
activity" evidence=IDA] [GO:0005524 "ATP binding" evidence=TAS]
[GO:0035087 "siRNA loading onto RISC involved in RNA interference"
evidence=IDA] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=IDA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IMP] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] Reactome:REACT_71
GO:GO:0005524 GO:GO:0005654 EMBL:CH471076 Reactome:REACT_1675
GO:GO:0035087 GO:GO:0030423 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 CTD:10978 eggNOG:COG5623
HOGENOM:HOG000231935 KO:K14399 OrthoDB:EOG4K0QNF GO:GO:0000214
GO:GO:0046404 GO:GO:0051736 GO:GO:0051733 GO:GO:0006388
InterPro:IPR010655 Pfam:PF06807 EMBL:U73524 EMBL:AK300232
EMBL:AK313007 EMBL:BC000446 IPI:IPI00024381 IPI:IPI00908312
RefSeq:NP_001136069.1 RefSeq:NP_006822.1 UniGene:Hs.523687
ProteinModelPortal:Q92989 SMR:Q92989 IntAct:Q92989 STRING:Q92989
PhosphoSite:Q92989 DMDM:13431366 PaxDb:Q92989 PRIDE:Q92989
DNASU:10978 Ensembl:ENST00000302731 Ensembl:ENST00000525602
Ensembl:ENST00000533682 GeneID:10978 KEGG:hsa:10978 UCSC:uc001nkw.3
UCSC:uc010rjw.2 GeneCards:GC11P057425 HGNC:HGNC:16999 MIM:608757
neXtProt:NX_Q92989 PharmGKB:PA162382477 HOVERGEN:HBG000921
InParanoid:Q92989 PhylomeDB:Q92989 Reactome:REACT_78
GenomeRNAi:10978 NextBio:41710 ArrayExpress:Q92989 Bgee:Q92989
CleanEx:HS_CLP1 Genevestigator:Q92989 GermOnline:ENSG00000172409
Uniprot:Q92989
Length = 425
Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
Identities = 210/414 (50%), Positives = 291/414 (70%)
Query: 11 FELKQDQELRFEVENAQ-IEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSIT 69
FEL+++ ELRFEVE +Q +++E+ +G+AEIFG EL ++KK+ F GAK AV+TWHGCS+
Sbjct: 15 FELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAGAKVAVFTWHGCSVQ 74
Query: 70 MKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHI 129
+ + R + YVSK+TPM Y+N H LE+ R +AE++ +RGP M+VGP DVGKST+C +
Sbjct: 75 L-SGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVVGPTDVGKSTVCRL 133
Query: 130 LLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGH 189
LLNYAVR L R+P +V+LDVGQG VS+PGT+GAL IERPA +E+GFS AP+VY++G
Sbjct: 134 LLNYAVR---LGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSIQAPLVYHFGS 190
Query: 190 LTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLR 249
TP N++LY RL ++R + + + SG +INTCGW+KG G++ L+ A +
Sbjct: 191 TTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQALVHAASAFE 250
Query: 250 VDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSRL 309
VD ++VLDQERLYNEL R+LP VLLPKSGGVV+RS+ FR E RD+RI+EYFYG R
Sbjct: 251 VDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDERIREYFYGFR- 309
Query: 310 KPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPG-PXXXXXXXXX 368
F PH+F++KF +V+IYK+GAP +PDSC+PLG++ + K+V V PG
Sbjct: 310 GCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHLLSVS 369
Query: 369 XXXXXESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLILTDIQYMD 422
E + E ++ GF+ VT VD+ Q +VL RPLP + L++ DI++MD
Sbjct: 370 TAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIRFMD 423
>UNIPROTKB|B4P4H2 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7245 "Drosophila
yakuba" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 EMBL:CM000158
eggNOG:COG5623 KO:K14399 GO:GO:0000214 GO:GO:0006388
InterPro:IPR010655 Pfam:PF06807 OrthoDB:EOG4VHHNQ
RefSeq:XP_002090899.1 STRING:B4P4H2 EnsemblMetazoa:FBtr0259877
GeneID:6529944 KEGG:dya:Dyak_GE13359 FlyBase:FBgn0231038
Uniprot:B4P4H2
Length = 423
Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
Identities = 207/416 (49%), Positives = 296/416 (71%)
Query: 11 FELKQDQELRFEVE--NAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSI 68
+ L+ D ELRFE+E +A++ + + SG AE+FG ELVK K+Y F +GAK A++T+ GC +
Sbjct: 9 YTLEADSELRFEIEQKDAKVLVSLVSGFAELFGTELVKKKQYEFGMGAKVAIFTYQGCVL 68
Query: 69 TMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCH 128
+ + + ++ Y+SKETPM Y+N H LE+ R EAE++ + GP+ M+VGP DVGKSTLC
Sbjct: 69 HV-SGKMDVCYISKETPMVQYVNCHAALEQFRMEAEEKDRHGPVAMVVGPMDVGKSTLCR 127
Query: 129 ILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYG 188
ILLNYAVR+ R+P++ DLDVGQG +++ G++ ++IERPA +E+GF++ AP+VY++G
Sbjct: 128 ILLNYAVRV---GRRPLYADLDVGQGSIAIAGSVATILIERPANVEEGFAKTAPLVYHFG 184
Query: 189 HLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSL 248
H +P+ N LY V ++ + +N + +T SSG+I+NTCGW+KG G+ L+ AK+
Sbjct: 185 HKSPSGNSILYNAVVSKMAEVTLHSLNSNKRTKSSGIIVNTCGWVKGSGYAHLLHAAKAY 244
Query: 249 RVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSR 308
I VLDQERLYNEL+R++PK VVLLPKSGGVV+RS++ R EARD+RIKEYFYG+
Sbjct: 245 GACAIFVLDQERLYNELLRDVPKGVHVVLLPKSGGVVERSKELRHEARDQRIKEYFYGNA 304
Query: 309 LKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPGPXXXXXXXXX 368
PF P SF++KF ++++YKIGAP LPDSCMP+G+ A + TKVV V P P
Sbjct: 305 RAPFYPFSFEVKFQDLRLYKIGAPPLPDSCMPIGMKAEDNKTKVVAVTPTPALIHHVLAL 364
Query: 369 XXXXX-ESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLIL-TDIQYMD 422
E E++ N+ GF CVT VDM RQ++ +L Q RPLP + L+L +++Q+MD
Sbjct: 365 SFAESVEDEVIGTNVAGFCCVTEVDMERQAVMLLSPQPRPLPPNALLLWSELQFMD 420
>UNIPROTKB|Q4R7R3 [details] [associations]
symbol:CLP1 "Polyribonucleotide 5'-hydroxyl-kinase Clp1"
species:9541 "Macaca fascicularis" [GO:0000214 "tRNA-intron
endonuclease complex" evidence=ISS] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=ISS] [GO:0030423
"targeting of mRNA for destruction involved in RNA interference"
evidence=ISS] [GO:0035087 "siRNA loading onto RISC involved in RNA
interference" evidence=ISS] [GO:0051733 "polydeoxyribonucleotide
kinase activity" evidence=ISS] [GO:0051736 "ATP-dependent
polyribonucleotide 5'-hydroxyl-kinase activity" evidence=ISS]
GO:GO:0005524 GO:GO:0006397 GO:GO:0035087 GO:GO:0030423
GO:GO:0000214 GO:GO:0046404 GO:GO:0051736 GO:GO:0051733
GO:GO:0006388 InterPro:IPR010655 Pfam:PF06807 EMBL:AB168751
ProteinModelPortal:Q4R7R3 SMR:Q4R7R3 PRIDE:Q4R7R3 Uniprot:Q4R7R3
Length = 425
Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
Identities = 210/414 (50%), Positives = 291/414 (70%)
Query: 11 FELKQDQELRFEVENAQ-IEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSIT 69
FEL+++ ELRFEVE +Q +++E+ +G+AEIFG EL ++KK+ F GAK AV+TWHGCS+
Sbjct: 15 FELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAGAKVAVFTWHGCSVQ 74
Query: 70 MKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHI 129
+ + R + YVSK+TPM Y+N H LE+ R +AE++ +RGP M+VGP DVGKST+C +
Sbjct: 75 L-SGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVVGPTDVGKSTVCRL 133
Query: 130 LLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGH 189
LLNYAVR L R+P +V+LDVGQG VS+PGT+GAL IERPA +E+GFS AP+VY++G
Sbjct: 134 LLNYAVR---LGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSIQAPLVYHFGS 190
Query: 190 LTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLR 249
TP N++LY RL ++R + + + SG +INTCGW+KG G++ L+ A +
Sbjct: 191 TTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQALVHAASAFE 250
Query: 250 VDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSRL 309
VD ++VLDQERLYNEL R+LP VLLPKSGGVV+RS+ FR E RD+RI+EYFYG R
Sbjct: 251 VDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDERIREYFYGFR- 309
Query: 310 KPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPG-PXXXXXXXXX 368
F PH+F++KF +V+IYK+GAP +PDSC+PLG++ + K+V V PG
Sbjct: 310 GCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHLLSVS 369
Query: 369 XXXXXESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLILTDIQYMD 422
E + E ++ GF+ VT VD+ Q +VL RPLP + L++ DI++MD
Sbjct: 370 TAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIRFMD 423
>UNIPROTKB|A2VE01 [details] [associations]
symbol:CLP1 "Polyribonucleotide 5'-hydroxyl-kinase Clp1"
species:9913 "Bos taurus" [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0006388
"tRNA splicing, via endonucleolytic cleavage and ligation"
evidence=ISS] [GO:0035087 "siRNA loading onto RISC involved in RNA
interference" evidence=ISS] [GO:0051736 "ATP-dependent
polyribonucleotide 5'-hydroxyl-kinase activity" evidence=ISS]
[GO:0051733 "polydeoxyribonucleotide kinase activity" evidence=ISS]
[GO:0000214 "tRNA-intron endonuclease complex" evidence=ISS]
[GO:0046404 "ATP-dependent polydeoxyribonucleotide
5'-hydroxyl-kinase activity" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
GO:GO:0005524 GO:GO:0006397 GO:GO:0035087 GO:GO:0030423
EMBL:BC133499 IPI:IPI00689141 RefSeq:NP_001075182.1
UniGene:Bt.15752 ProteinModelPortal:A2VE01 STRING:A2VE01
Ensembl:ENSBTAT00000008507 GeneID:506507 KEGG:bta:506507 CTD:10978
eggNOG:COG5623 GeneTree:ENSGT00390000000344 HOGENOM:HOG000231935
InParanoid:A2VE01 KO:K14399 OMA:GFSVQAP OrthoDB:EOG4K0QNF
NextBio:20867633 GO:GO:0000214 GO:GO:0046404 GO:GO:0051736
GO:GO:0051733 GO:GO:0006388 InterPro:IPR010655 Pfam:PF06807
Uniprot:A2VE01
Length = 425
Score = 1098 (391.6 bits), Expect = 3.3e-111, P = 3.3e-111
Identities = 210/414 (50%), Positives = 291/414 (70%)
Query: 11 FELKQDQELRFEVENAQ-IEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSIT 69
FEL+++ ELRFEVE +Q +++E+ +G+AEIFG EL ++KK+ F GAK AV+TWHGCS+
Sbjct: 15 FELERETELRFEVEASQSVQLELLAGMAEIFGTELTRNKKFTFDAGAKVAVFTWHGCSLQ 74
Query: 70 MKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHI 129
+ + R + YVSK+TPM Y+N H LE+ R +AE++ +RGP M+VGP DVGKST+C +
Sbjct: 75 L-SGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVVGPTDVGKSTVCRL 133
Query: 130 LLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGH 189
LLNYAVR L R+P +V+LDVGQG VS+PGT+GAL IERPA +E+GFS AP+VY++G
Sbjct: 134 LLNYAVR---LGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSIQAPLVYHFGS 190
Query: 190 LTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLR 249
TP N++LY RL ++R + + + SG +INTCGW+KG G++ L+ A +
Sbjct: 191 TTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQALVHAASAFE 250
Query: 250 VDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSRL 309
VD ++VLDQERLYNEL R+LP VLLPKSGGVV+RS+ FR E RD+RI+EYFYG R
Sbjct: 251 VDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDERIREYFYGFR- 309
Query: 310 KPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPG-PXXXXXXXXX 368
F PH+F++KF +V+IYK+GAP +PDSC+PLG++ + K+V V PG
Sbjct: 310 GCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHLLSVS 369
Query: 369 XXXXXESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLILTDIQYMD 422
E + E ++ GF+ VT VD+ Q +VL RPLP + L++ DI++MD
Sbjct: 370 TAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIRFMD 423
>UNIPROTKB|E2R321 [details] [associations]
symbol:CLP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051736 "ATP-dependent polyribonucleotide
5'-hydroxyl-kinase activity" evidence=IEA] [GO:0051733
"polydeoxyribonucleotide kinase activity" evidence=IEA] [GO:0035087
"siRNA loading onto RISC involved in RNA interference"
evidence=IEA] [GO:0030423 "targeting of mRNA for destruction
involved in RNA interference" evidence=IEA] [GO:0006388 "tRNA
splicing, via endonucleolytic cleavage and ligation" evidence=IEA]
[GO:0000214 "tRNA-intron endonuclease complex" evidence=IEA]
GO:GO:0035087 GO:GO:0030423 CTD:10978 GeneTree:ENSGT00390000000344
KO:K14399 OMA:GFSVQAP GO:GO:0000214 GO:GO:0051736 GO:GO:0051733
GO:GO:0006388 InterPro:IPR010655 Pfam:PF06807 EMBL:AAEX03011434
RefSeq:XP_852672.1 Ensembl:ENSCAFT00000012481 GeneID:610161
KEGG:cfa:610161 NextBio:20895728 Uniprot:E2R321
Length = 425
Score = 1098 (391.6 bits), Expect = 3.3e-111, P = 3.3e-111
Identities = 210/414 (50%), Positives = 291/414 (70%)
Query: 11 FELKQDQELRFEVENAQ-IEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSIT 69
FEL+++ ELRFEVE +Q +++E+ +G+AEIFG EL ++KK+ F GAK AV+TWHGCS+
Sbjct: 15 FELERETELRFEVEASQSVQLELLAGMAEIFGTELTRNKKFTFDAGAKVAVFTWHGCSLQ 74
Query: 70 MKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHI 129
+ + R + YVSK+TPM Y+N H LE+ R +AE++ +RGP M+VGP DVGKST+C +
Sbjct: 75 L-SGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVVGPTDVGKSTVCRL 133
Query: 130 LLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGH 189
LLNYAVR L R+P +V+LDVGQG VS+PGT+GAL IERPA +E+GFS AP+VY++G
Sbjct: 134 LLNYAVR---LGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSIQAPLVYHFGS 190
Query: 190 LTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLR 249
TP N++LY RL ++R + + + SG +INTCGW+KG G++ L+ A +
Sbjct: 191 TTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQALVHAASAFE 250
Query: 250 VDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSRL 309
VD ++VLDQERLYNEL R+LP VLLPKSGGVV+RS+ FR E RD+RI+EYFYG R
Sbjct: 251 VDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDERIREYFYGFR- 309
Query: 310 KPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPG-PXXXXXXXXX 368
F PH+F++KF +V+IYK+GAP +PDSC+PLG++ + K+V V PG
Sbjct: 310 GCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHLLSVS 369
Query: 369 XXXXXESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLILTDIQYMD 422
E + E ++ GF+ VT VD+ Q +VL RPLP + L++ DI++MD
Sbjct: 370 TAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIRFMD 423
>UNIPROTKB|F2Z5N4 [details] [associations]
symbol:CLP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051736 "ATP-dependent polyribonucleotide
5'-hydroxyl-kinase activity" evidence=IEA] [GO:0051733
"polydeoxyribonucleotide kinase activity" evidence=IEA] [GO:0035087
"siRNA loading onto RISC involved in RNA interference"
evidence=IEA] [GO:0030423 "targeting of mRNA for destruction
involved in RNA interference" evidence=IEA] [GO:0006388 "tRNA
splicing, via endonucleolytic cleavage and ligation" evidence=IEA]
[GO:0000214 "tRNA-intron endonuclease complex" evidence=IEA]
GO:GO:0035087 GO:GO:0030423 GeneTree:ENSGT00390000000344 KO:K14399
OMA:GFSVQAP GO:GO:0000214 GO:GO:0051736 GO:GO:0051733 GO:GO:0006388
InterPro:IPR010655 Pfam:PF06807 EMBL:CU914175 RefSeq:XP_003122764.1
UniGene:Ssc.18662 ProteinModelPortal:F2Z5N4
Ensembl:ENSSSCT00000014399 GeneID:100520541 KEGG:ssc:100520541
Uniprot:F2Z5N4
Length = 425
Score = 1098 (391.6 bits), Expect = 3.3e-111, P = 3.3e-111
Identities = 210/414 (50%), Positives = 291/414 (70%)
Query: 11 FELKQDQELRFEVENAQ-IEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSIT 69
FEL+++ ELRFEVE +Q +++E+ +G+AEIFG EL ++KK+ F GAK AV+TWHGCS+
Sbjct: 15 FELERETELRFEVEASQSVQLELLAGMAEIFGTELTRNKKFTFDAGAKVAVFTWHGCSLQ 74
Query: 70 MKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHI 129
+ + R + YVSK+TPM Y+N H LE+ R +AE++ +RGP M+VGP DVGKST+C +
Sbjct: 75 L-SGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVVGPTDVGKSTVCRL 133
Query: 130 LLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGH 189
LLNYAVR L R+P +V+LDVGQG VS+PGT+GAL IERPA +E+GFS AP+VY++G
Sbjct: 134 LLNYAVR---LGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSIQAPLVYHFGS 190
Query: 190 LTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLR 249
TP N++LY RL ++R + + + SG +INTCGW+KG G++ L+ A +
Sbjct: 191 TTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQALVHAASAFE 250
Query: 250 VDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSRL 309
VD ++VLDQERLYNEL R+LP VLLPKSGGVV+RS+ FR E RD+RI+EYFYG R
Sbjct: 251 VDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDERIREYFYGFR- 309
Query: 310 KPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPG-PXXXXXXXXX 368
F PH+F++KF +V+IYK+GAP +PDSC+PLG++ + K+V V PG
Sbjct: 310 GCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHLLSVS 369
Query: 369 XXXXXESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLILTDIQYMD 422
E + E ++ GF+ VT VD+ Q +VL RPLP + L++ DI++MD
Sbjct: 370 TAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIRFMD 423
>UNIPROTKB|B3MGZ0 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7217 "Drosophila
ananassae" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 EMBL:CH902619
eggNOG:COG5623 KO:K14399 GO:GO:0000214 GO:GO:0006388
InterPro:IPR010655 Pfam:PF06807 RefSeq:XP_001961086.1 STRING:B3MGZ0
EnsemblMetazoa:FBtr0115882 GeneID:6494046 KEGG:dan:Dana_GF11182
FlyBase:FBgn0088222 InParanoid:B3MGZ0 OrthoDB:EOG4VHHNQ
Uniprot:B3MGZ0
Length = 425
Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
Identities = 207/416 (49%), Positives = 294/416 (70%)
Query: 11 FELKQDQELRFEVENAQIEIEVT--SGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSI 68
+ L+ D ELRFE+E ++ VT SG AE+FG ELVK KKY F +GAK A++T+ GC +
Sbjct: 11 YTLESDSELRFEIEQKDAKVLVTLISGFAELFGTELVKKKKYEFGVGAKVAIFTYQGCVL 70
Query: 69 TMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCH 128
+ + + ++ Y+SKETPM Y+N H LE+ R++AE + +RGP+ M+VGP DVGKSTLC
Sbjct: 71 HV-SGKMDVCYISKETPMVQYLNCHAALEQFRTDAEDKDQRGPVAMVVGPMDVGKSTLCR 129
Query: 129 ILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYG 188
ILLNYAVR+ R+P++ DLDVGQG +++ G + ++IERPA++EDGF + AP+VY++G
Sbjct: 130 ILLNYAVRV---GRRPLYADLDVGQGAIAISGNVATILIERPASVEDGFPKTAPLVYHFG 186
Query: 189 HLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSL 248
H +P N LY V ++ + + +N + +T SSG+IINTCGW+KG G+ L+ A++
Sbjct: 187 HKSPGGNSVLYNSVVSKMAEVTLQSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHAAQAY 246
Query: 249 RVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSR 308
I VLDQERLYNEL+R++P+ +VVLLPKSGGVV+RS++ R E+RD R+KEYFYG+
Sbjct: 247 GACAIFVLDQERLYNELLRDVPQGVNVVLLPKSGGVVERSKELRHESRDLRMKEYFYGNP 306
Query: 309 LKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPGPXXXXXXXXX 368
PF P SF++KF ++++YKIGAP LPDSCMP+G+ A + TKVV V P P
Sbjct: 307 RAPFYPFSFEVKFQDLRLYKIGAPPLPDSCMPIGMKAEDNKTKVVAVTPTPALIHHILAL 366
Query: 369 XXXXX-ESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLIL-TDIQYMD 422
E +++ N+ GF CVT VDM RQ++ VL Q RPLP + L+L +++Q+MD
Sbjct: 367 SFAESVEDDVIGSNVAGFCCVTEVDMERQAVMVLSPQPRPLPPNSLLLWSELQFMD 422
>UNIPROTKB|B4GGT6 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7234 "Drosophila
persimilis" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 EMBL:CH479183
KO:K14399 GO:GO:0000214 GO:GO:0006388 InterPro:IPR010655
Pfam:PF06807 OrthoDB:EOG4VHHNQ RefSeq:XP_002017867.1
EnsemblMetazoa:FBtr0182686 GeneID:6592646 KEGG:dpe:Dper_GL17071
FlyBase:FBgn0154675 Uniprot:B4GGT6
Length = 425
Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
Identities = 208/418 (49%), Positives = 296/418 (70%)
Query: 9 QTFELKQDQELRFEVE--NAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGC 66
Q F L+ D ELRFE+E +A++ + + +G AE+FG ELVK KKY F +GAK A++T+ GC
Sbjct: 9 QDFSLEADSELRFEIEQKDAKVLVTLVNGFAELFGTELVKKKKYEFGMGAKVAIFTYQGC 68
Query: 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTL 126
+ + + ++ Y+SKETPM Y+N H LE+ R+EAE++ +RGP+ M+VGP DVGKSTL
Sbjct: 69 VLHV-TGKMDVCYISKETPMVQYVNCHAALEQFRTEAEEKDRRGPVAMVVGPTDVGKSTL 127
Query: 127 CHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYN 186
C ILLNYAVR+ R+P++ DLDVGQG +++ G + ++IERPA++E+GF + AP+VY+
Sbjct: 128 CRILLNYAVRV---GRRPLYADLDVGQGAIAISGNVATILIERPASVEEGFPKTAPLVYH 184
Query: 187 YGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAK 246
+GH +P+ N LY V ++ + + +N + +T SSG+I+NTCGW+KG G+ L+ A+
Sbjct: 185 FGHKSPSGNSVLYNAVVSKMAEVTLQSLNGNKRTKSSGIIVNTCGWVKGHGYAHLLHAAR 244
Query: 247 SLRVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYG 306
+ I VLDQERLYNEL+R++P S VVLLPKSGGVV+RS++ R E RD+RIKEYFYG
Sbjct: 245 AYGACAIFVLDQERLYNELLRDVPSSVHVVLLPKSGGVVERSKELRHECRDQRIKEYFYG 304
Query: 307 SRLKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPGPXXXXXXX 366
+ PF P SF++KF E+++YKIGAP LPDSCMP+G+ A + TKVV V P P
Sbjct: 305 NARAPFYPFSFEVKFQELRLYKIGAPPLPDSCMPIGMKAEDNKTKVVAVTPTPALIHHVL 364
Query: 367 XXXXXXX-ESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLIL-TDIQYMD 422
+ +++ NI GF CVT VDM RQ + +L Q RPLP + L+L +++Q+MD
Sbjct: 365 ALSFAESVDDDVIGTNIAGFCCVTEVDMERQVVMLLSPQPRPLPPNALLLWSELQFMD 422
>UNIPROTKB|Q28ZT4 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:46245 "Drosophila
pseudoobscura pseudoobscura" [GO:0000214 "tRNA-intron endonuclease
complex" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0006388 "tRNA splicing, via endonucleolytic
cleavage and ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397
EMBL:CM000071 GenomeReviews:CM000071_GR eggNOG:COG5623 KO:K14399
OMA:GFSVQAP GO:GO:0000214 GO:GO:0006388 InterPro:IPR010655
Pfam:PF06807 OrthoDB:EOG4VHHNQ RefSeq:XP_001360953.1
ProteinModelPortal:Q28ZT4 GeneID:4804382 KEGG:dpo:Dpse_GA19268
FlyBase:FBgn0079265 InParanoid:Q28ZT4 Uniprot:Q28ZT4
Length = 425
Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
Identities = 208/418 (49%), Positives = 296/418 (70%)
Query: 9 QTFELKQDQELRFEVE--NAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGC 66
Q F L+ D ELRFE+E +A++ + + +G AE+FG ELVK KKY F +GAK A++T+ GC
Sbjct: 9 QDFSLEADSELRFEIEQKDAKVLVTLVNGFAELFGTELVKKKKYEFGMGAKVAIFTYQGC 68
Query: 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTL 126
+ + + ++ Y+SKETPM Y+N H LE+ R+EAE++ +RGP+ M+VGP DVGKSTL
Sbjct: 69 VLHV-TGKMDVCYISKETPMVQYVNCHAALEQFRTEAEEKDRRGPVAMVVGPTDVGKSTL 127
Query: 127 CHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYN 186
C ILLNYAVR+ R+P++ DLDVGQG +++ G + ++IERPA++E+GF + AP+VY+
Sbjct: 128 CRILLNYAVRV---GRRPLYADLDVGQGAIAISGNVATILIERPASVEEGFPKTAPLVYH 184
Query: 187 YGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAK 246
+GH +P+ N LY V ++ + + +N + +T SSG+I+NTCGW+KG G+ L+ A+
Sbjct: 185 FGHKSPSGNSVLYNAVVSKMAEVTLQSLNGNKRTKSSGIIVNTCGWVKGHGYAHLLHAAR 244
Query: 247 SLRVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYG 306
+ I VLDQERLYNEL+R++P S VVLLPKSGGVV+RS++ R E RD+RIKEYFYG
Sbjct: 245 AYGACAIFVLDQERLYNELLRDVPSSVHVVLLPKSGGVVERSKELRHECRDQRIKEYFYG 304
Query: 307 SRLKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPGPXXXXXXX 366
+ PF P SF++KF E+++YKIGAP LPDSCMP+G+ A + TKVV V P P
Sbjct: 305 NARAPFYPFSFEVKFQELRLYKIGAPPLPDSCMPIGMKAEDNKTKVVAVTPTPALIHHVL 364
Query: 367 XXXXXXX-ESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLIL-TDIQYMD 422
+ +++ NI GF CVT VDM RQ + +L Q RPLP + L+L +++Q+MD
Sbjct: 365 ALSFAESVDDDVIGTNIAGFCCVTEVDMERQVVMLLSPQPRPLPPNALLLWSELQFMD 422
>MGI|MGI:2138968 [details] [associations]
symbol:Clp1 "CLP1, cleavage and polyadenylation factor I
subunit" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000214 "tRNA-intron endonuclease
complex" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0016301 "kinase activity" evidence=IEA]
[GO:0016310 "phosphorylation" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0030423 "targeting of mRNA
for destruction involved in RNA interference" evidence=ISO]
[GO:0035087 "siRNA loading onto RISC involved in RNA interference"
evidence=ISO] [GO:0046404 "ATP-dependent polydeoxyribonucleotide
5'-hydroxyl-kinase activity" evidence=IEA] [GO:0051733
"polydeoxyribonucleotide kinase activity" evidence=ISO] [GO:0051736
"ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity"
evidence=ISO] MGI:MGI:2138968 GO:GO:0005524 GO:GO:0006397
GO:GO:0035087 GO:GO:0030423 CTD:10978 eggNOG:COG5623
GeneTree:ENSGT00390000000344 HOGENOM:HOG000231935 KO:K14399
OMA:GFSVQAP OrthoDB:EOG4K0QNF GO:GO:0000214 GO:GO:0046404
GO:GO:0051736 GO:GO:0051733 GO:GO:0006388 InterPro:IPR010655
Pfam:PF06807 HOVERGEN:HBG000921 EMBL:AK077647 EMBL:BC003237
IPI:IPI00116934 RefSeq:NP_598601.1 UniGene:Mm.21583
ProteinModelPortal:Q99LI9 SMR:Q99LI9 IntAct:Q99LI9 STRING:Q99LI9
PhosphoSite:Q99LI9 PRIDE:Q99LI9 DNASU:98985
Ensembl:ENSMUST00000028475 Ensembl:ENSMUST00000165219 GeneID:98985
KEGG:mmu:98985 InParanoid:Q99LI9 NextBio:353735 Bgee:Q99LI9
Genevestigator:Q99LI9 GermOnline:ENSMUSG00000027079 Uniprot:Q99LI9
Length = 425
Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
Identities = 210/414 (50%), Positives = 291/414 (70%)
Query: 11 FELKQDQELRFEVENAQ-IEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSIT 69
FEL+++ ELRFEVE +Q +++E+ +G+AEIFG EL ++KK+ F GAK AV+TWHGCS+
Sbjct: 15 FELERETELRFEVEASQSVQLELLAGMAEIFGTELTRNKKFTFDAGAKVAVFTWHGCSLQ 74
Query: 70 MKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHI 129
+ + R + YVSK+TPM Y+N H LE+ R +AE++ +RGP M+VGP DVGKST+C +
Sbjct: 75 L-SGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVVGPTDVGKSTVCRL 133
Query: 130 LLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGH 189
LLNYAVR L R+P +V+LDVGQG VS+PGT+GAL IERPA +E+GFS AP+VY++G
Sbjct: 134 LLNYAVR---LGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSIQAPLVYHFGS 190
Query: 190 LTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLR 249
TP N++LY RL ++R + + + SG +INTCGW+KG G++ L+ A +
Sbjct: 191 TTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGYGYQALVHAASAFE 250
Query: 250 VDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSRL 309
VD ++VLDQERLYNEL R+LP VLLPKSGGVV+RS+ FR E RD+RI+EYFYG R
Sbjct: 251 VDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDERIREYFYGFR- 309
Query: 310 KPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPG-PXXXXXXXXX 368
F PH+F++KF +V+IYK+GAP +PDSC+PLG++ + K+V V PG
Sbjct: 310 GCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHLLSVS 369
Query: 369 XXXXXESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLILTDIQYMD 422
E + E ++ GF+ VT VD+ Q +VL RPLP + L++ DI++MD
Sbjct: 370 TAEGTEENLSETSVAGFIVVTSVDVEHQVFTVLSPAPRPLPKNFLLIMDIRFMD 423
>RGD|1307679 [details] [associations]
symbol:Clp1 "cleavage and polyadenylation factor I subunit 1"
species:10116 "Rattus norvegicus" [GO:0000214 "tRNA-intron
endonuclease complex" evidence=ISO;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006388 "tRNA splicing, via endonucleolytic
cleavage and ligation" evidence=ISO;ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO;ISS]
[GO:0035087 "siRNA loading onto RISC involved in RNA interference"
evidence=ISO;ISS] [GO:0046404 "ATP-dependent
polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=IEA]
[GO:0051733 "polydeoxyribonucleotide kinase activity"
evidence=ISO;ISS] [GO:0051736 "ATP-dependent polyribonucleotide
5'-hydroxyl-kinase activity" evidence=ISO;ISS] RGD:1307679
GO:GO:0005524 GO:GO:0006397 GO:GO:0035087 GO:GO:0030423
EMBL:CH473949 CTD:10978 eggNOG:COG5623 GeneTree:ENSGT00390000000344
HOGENOM:HOG000231935 KO:K14399 OMA:GFSVQAP OrthoDB:EOG4K0QNF
GO:GO:0000214 GO:GO:0046404 GO:GO:0051736 GO:GO:0051733
GO:GO:0006388 InterPro:IPR010655 Pfam:PF06807 EMBL:BC087130
IPI:IPI00193975 RefSeq:NP_001009599.1 UniGene:Rn.144332
ProteinModelPortal:Q5PQL4 SMR:Q5PQL4 STRING:Q5PQL4
Ensembl:ENSRNOT00000009726 GeneID:311166 KEGG:rno:311166
UCSC:RGD:1307679 InParanoid:Q5PQL4 NextBio:663086
Genevestigator:Q5PQL4 Uniprot:Q5PQL4
Length = 425
Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
Identities = 210/414 (50%), Positives = 291/414 (70%)
Query: 11 FELKQDQELRFEVENAQ-IEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSIT 69
FEL+++ ELRFEVE +Q +++E+ +G+AEIFG EL ++KK+ F GAK AV+TWHGCS+
Sbjct: 15 FELERETELRFEVEASQSVQLELLAGMAEIFGTELTRNKKFTFDAGAKVAVFTWHGCSLQ 74
Query: 70 MKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHI 129
+ + R + YVSK+TPM Y+N H LE+ R +AE++ +RGP M+VGP DVGKST+C +
Sbjct: 75 L-SGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVVGPTDVGKSTVCRL 133
Query: 130 LLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGH 189
LLNYAVR L R+P +V+LDVGQG VS+PGT+GAL IERPA +E+GFS AP+VY++G
Sbjct: 134 LLNYAVR---LGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSIQAPLVYHFGS 190
Query: 190 LTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLR 249
TP N++LY RL ++R + + + SG +INTCGW+KG G++ L+ A +
Sbjct: 191 TTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGYGYQALVHAASAFE 250
Query: 250 VDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSRL 309
VD ++VLDQERLYNEL R+LP VLLPKSGGVV+RS+ FR E RD+RI+EYFYG R
Sbjct: 251 VDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDERIREYFYGFR- 309
Query: 310 KPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPG-PXXXXXXXXX 368
F PH+F++KF +V+IYK+GAP +PDSC+PLG++ + K+V V PG
Sbjct: 310 GCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHLLSVS 369
Query: 369 XXXXXESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLILTDIQYMD 422
E + E ++ GF+ VT VD+ Q +VL RPLP + L++ DI++MD
Sbjct: 370 TAEGTEENLSETSVAGFIVVTSVDVEHQVFTVLSPAPRPLPKNFLLIMDIRFMD 423
>UNIPROTKB|B4JVN0 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7222 "Drosophila
grimshawi" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 EMBL:CH916375
eggNOG:COG5623 KO:K14399 OMA:GFSVQAP GO:GO:0000214 GO:GO:0006388
InterPro:IPR010655 Pfam:PF06807 OrthoDB:EOG4VHHNQ
RefSeq:XP_001995426.1 STRING:B4JVN0 EnsemblMetazoa:FBtr0158565
GeneID:6568947 KEGG:dgr:Dgri_GH23151 FlyBase:FBgn0130608
InParanoid:B4JVN0 Uniprot:B4JVN0
Length = 425
Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
Identities = 209/416 (50%), Positives = 296/416 (71%)
Query: 11 FELKQDQELRFEVE--NAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSI 68
+ L+ D ELRFE+E NA++ + + +G AE+FG ELVK KKY F +GAK A++T+ GC I
Sbjct: 11 YTLEADSELRFEIEQKNAKVLVTLLTGFAELFGTELVKKKKYEFGVGAKVAIFTYQGCVI 70
Query: 69 TMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCH 128
+ + + ++ Y+SKETPM Y+N H LE+ R EAEQ+ KRGP +IVGP DVGKSTLC
Sbjct: 71 HV-SGQMDVCYISKETPMVQYINCHAALEQFRLEAEQRDKRGPSVLIVGPMDVGKSTLCR 129
Query: 129 ILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYG 188
ILLNYAVR+ R+P++ DLDVGQG +SV G + ++IERPA+IEDGF++ AP+VY++G
Sbjct: 130 ILLNYAVRV---GRRPLYADLDVGQGAISVAGNVATILIERPASIEDGFAKTAPLVYHFG 186
Query: 189 HLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSL 248
H +P+ N LY V ++ + + ++ + +T SSG+I+NTCGW+KG G++ L+ A++
Sbjct: 187 HKSPSGNSVLYNAVVSKMAEVTLQSLDANKRTKSSGIIVNTCGWVKGSGYEHLLHAARAY 246
Query: 249 RVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSR 308
R I VLDQERLYN+L+R++P + VVLLPKSGGVV+RS+ R E+R++RIKEYFYG+
Sbjct: 247 RARAIFVLDQERLYNDLLRDVPANVHVVLLPKSGGVVERSKGLRHESREQRIKEYFYGNA 306
Query: 309 LKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPGPXXXXXXXXX 368
PF P SF++KF ++++YKIGAP LPDSCMP+G+ A + KVV V P
Sbjct: 307 RTPFYPFSFEVKFQDLRLYKIGAPPLPDSCMPIGMKAEDNKKKVVAVTATPALLHHILTL 366
Query: 369 XXX-XXESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLIL-TDIQYMD 422
+ +++ NI GF CVT VDM RQS+ +L Q RPLP + L+L +++Q+MD
Sbjct: 367 SFAESTDDDVIGTNIAGFCCVTEVDMERQSVMLLSPQPRPLPPNALLLWSELQFMD 422
>UNIPROTKB|B4MCL6 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7244 "Drosophila
virilis" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 eggNOG:COG5623
KO:K14399 OMA:GFSVQAP GO:GO:0000214 GO:GO:0006388
InterPro:IPR010655 Pfam:PF06807 OrthoDB:EOG4VHHNQ EMBL:CH940659
RefSeq:XP_002058869.1 STRING:B4MCL6 EnsemblMetazoa:FBtr0235606
GeneID:6635342 KEGG:dvi:Dvir_GJ19681 FlyBase:FBgn0206823
InParanoid:B4MCL6 Uniprot:B4MCL6
Length = 425
Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
Identities = 203/416 (48%), Positives = 298/416 (71%)
Query: 11 FELKQDQELRFEVE--NAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSI 68
+ L+ D ELRFE+E +A++ + + +G AE+FG ELVK KKY F +GAK A++T+ GC +
Sbjct: 11 YVLEADSELRFEIEQKDAKVLVTLVTGFAELFGTELVKKKKYEFGVGAKVAIFTYQGCVL 70
Query: 69 TMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCH 128
+ + + ++ Y+SKETPM Y+N H LE+ R EAE++ KRGP+ +IVGP DVGKSTLC
Sbjct: 71 HV-SGKMDVCYISKETPMVQYINCHAALEQFRMEAEERDKRGPVVLIVGPMDVGKSTLCR 129
Query: 129 ILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYG 188
ILLNYAVR+ R+P++ DLDVGQG +S+ G + ++IERPA++E+GF++ AP+VY++G
Sbjct: 130 ILLNYAVRV---GRRPLYADLDVGQGAISISGNVATILIERPASVEEGFTKTAPLVYHFG 186
Query: 189 HLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSL 248
H +P AN LY V ++ + + ++ + +T SSG+I+NTCGW+KG G+ L+ A++
Sbjct: 187 HKSPGANNVLYNAVVSKMAEVTLQSLDANKRTKSSGIIVNTCGWVKGSGYAHLLHAARAY 246
Query: 249 RVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSR 308
R + VLDQERLYN+L+R++P + VVLLPKSGGVV+RS++ R E+R++R+KEYFYG+
Sbjct: 247 RARAVFVLDQERLYNDLLRDVPSNVHVVLLPKSGGVVERSKELRHESREQRVKEYFYGNT 306
Query: 309 LKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPGPXXXXXXXXX 368
PF P SF++KF ++++YKIGAP LPDSCMP+G+ A + KVV V P P
Sbjct: 307 RTPFYPFSFEVKFQDLRLYKIGAPPLPDSCMPIGMKAEDNKKKVVPVTPTPSLLHHILTL 366
Query: 369 XXX-XXESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLIL-TDIQYMD 422
+ +++ N+ GF CVT VDM RQS+ +L Q RPLP + L+L ++IQ+MD
Sbjct: 367 SFAESTDDDVIGTNVAGFCCVTEVDMDRQSVMLLSPQPRPLPPNALLLWSEIQFMD 422
>UNIPROTKB|B4KML2 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7230 "Drosophila
mojavensis" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 EMBL:CH933808
KO:K14399 GO:GO:0000214 GO:GO:0006388 InterPro:IPR010655
Pfam:PF06807 OrthoDB:EOG4VHHNQ RefSeq:XP_002006924.1
EnsemblMetazoa:FBtr0172061 GeneID:6581179 KEGG:dmo:Dmoj_GI21336
FlyBase:FBgn0144066 InParanoid:B4KML2 Uniprot:B4KML2
Length = 425
Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
Identities = 206/414 (49%), Positives = 293/414 (70%)
Query: 13 LKQDQELRFEVENAQIEIEVT--SGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSITM 70
L D ELRFE+E ++ VT SG AE+FG ELVK KKY F IGAK A++T+ GC + +
Sbjct: 13 LDADSELRFEIEQKDAKVFVTLISGFAELFGTELVKKKKYEFGIGAKVAIFTYQGCVLQV 72
Query: 71 KNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHIL 130
+ ++ Y+SKETPM Y+N H LE+ R++AE+ KRGP+ ++VGP DVGKSTLC IL
Sbjct: 73 -TGKMDVCYISKETPMIQYINCHAALEQFRTDAEEHDKRGPVILVVGPMDVGKSTLCRIL 131
Query: 131 LNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHL 190
LNYAVR+ R+P++ DLDVGQG +S+PG I ++IERPA++E+GF++ AP+VY++GH
Sbjct: 132 LNYAVRV---GRRPLYADLDVGQGAISIPGNIATILIERPASVEEGFAKTAPLVYHFGHK 188
Query: 191 TPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRV 250
+P+ N LY V ++ + + ++ + +T SSG+I+NTCGW+KG G+K L+ A++ R
Sbjct: 189 SPSGNSVLYNAVVSKMAEVTLQSLDANKRTKSSGIIVNTCGWVKGYGYKHLLHAARAYRA 248
Query: 251 DNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSRLK 310
I VLDQERLYN+L+R++P + VVLLPKSGGVV+R+++ R E+R++RIKEYFYG+
Sbjct: 249 RAIFVLDQERLYNDLLRDVPSNVHVVLLPKSGGVVERTKELRHESREQRIKEYFYGNMRT 308
Query: 311 PFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPGPXXXXXXXXXXX 370
PF P SF++KF ++++YKIGAP LPDSCMP+G+ A + KVV V P
Sbjct: 309 PFYPFSFEVKFQDLRLYKIGAPPLPDSCMPIGMKAEDNKKKVVAVTPTSSLLHHILTLSF 368
Query: 371 XXXESE-ILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLIL-TDIQYMD 422
E ++ N+ GF CVT VDM RQS+ +L Q RPLP + L+L +++Q+MD
Sbjct: 369 AESTDENVIGTNVAGFCCVTEVDMERQSVMLLSPQPRPLPPNALLLWSELQFMD 422
>UNIPROTKB|B4MRZ9 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7260 "Drosophila
willistoni" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 EMBL:CH963850
eggNOG:COG5623 KO:K14399 OMA:GFSVQAP GO:GO:0000214 GO:GO:0006388
InterPro:IPR010655 Pfam:PF06807 OrthoDB:EOG4VHHNQ
RefSeq:XP_002063902.1 STRING:B4MRZ9 EnsemblMetazoa:FBtr0246572
GeneID:6640990 KEGG:dwi:Dwil_GK15921 FlyBase:FBgn0217923
InParanoid:B4MRZ9 Uniprot:B4MRZ9
Length = 425
Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
Identities = 203/416 (48%), Positives = 294/416 (70%)
Query: 11 FELKQDQELRFEVENAQIEIEVT--SGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSI 68
+ L+ D ELRFE+E +++ VT +G AE+FG ELVK KKY F +GAK A++T+ GC +
Sbjct: 11 YTLESDSELRFEIEQKDVKVLVTLVNGFAELFGTELVKKKKYEFGMGAKVAIFTYQGCVL 70
Query: 69 TMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCH 128
++ + ++ YVSKETPM Y+N H LE+ R EAE++ GP+ M+VGP DVGKSTLC
Sbjct: 71 HVQG-KMDVCYVSKETPMVQYVNCHAALEQFRQEAEEKDACGPVAMVVGPMDVGKSTLCR 129
Query: 129 ILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYG 188
ILLNYAVR+ R+P++ D+DVGQG +++PG + ++IERPA+IE+GF + AP+VY++G
Sbjct: 130 ILLNYAVRV---GRRPLYADIDVGQGAIAIPGNVATILIERPASIEEGFPKTAPLVYHFG 186
Query: 189 HLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSL 248
H +P+ N LY V ++ + ++ + +T SSG+I+NTCGW+KG G+ L+ A++
Sbjct: 187 HKSPSGNSVLYNAVVSKMAEVTLNSLSGNKRTQSSGIIVNTCGWVKGSGYAHLLHAARAY 246
Query: 249 RVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSR 308
I VLDQERLYNEL+R++P + VVLLPKSGGVV+RS++ R E+RD+RIKEYFYG+
Sbjct: 247 GAKAIFVLDQERLYNELLRDVPPNVHVVLLPKSGGVVERSKELRHESRDQRIKEYFYGNI 306
Query: 309 LKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPGPXXXXXXXXX 368
PF P SF++KF ++++YKIGAP LPDSCMP+G+ A + TKVV V P
Sbjct: 307 RAPFYPFSFEVKFQDLRLYKIGAPPLPDSCMPIGMKAEDNKTKVVAVTPTQSLLHHILAL 366
Query: 369 XXXX-XESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLIL-TDIQYMD 422
+ +++ N+ GF CVT+VDM RQ++ +L Q RPLP + L+L +++Q+MD
Sbjct: 367 SFAENTDDDVIGTNVAGFCCVTNVDMDRQAVMLLSPQPRPLPPNALLLWSELQFMD 422
>UNIPROTKB|Q66JK4 [details] [associations]
symbol:clp1 "Polyribonucleotide 5'-hydroxyl-kinase Clp1"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000214
"tRNA-intron endonuclease complex" evidence=ISS] [GO:0006388 "tRNA
splicing, via endonucleolytic cleavage and ligation" evidence=ISS]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=ISS] [GO:0035087 "siRNA loading onto RISC
involved in RNA interference" evidence=ISS] [GO:0051733
"polydeoxyribonucleotide kinase activity" evidence=ISS] [GO:0051736
"ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity"
evidence=ISS] GO:GO:0005524 GO:GO:0006397 GO:GO:0035087
GO:GO:0030423 CTD:10978 eggNOG:COG5623 GeneTree:ENSGT00390000000344
HOGENOM:HOG000231935 KO:K14399 OrthoDB:EOG4K0QNF GO:GO:0000214
GO:GO:0046404 GO:GO:0051736 GO:GO:0051733 GO:GO:0006388
InterPro:IPR010655 Pfam:PF06807 EMBL:CR848531 EMBL:BC080880
RefSeq:NP_001008002.1 UniGene:Str.3967 ProteinModelPortal:Q66JK4
STRING:Q66JK4 Ensembl:ENSXETT00000015427 GeneID:493364
KEGG:xtr:493364 Xenbase:XB-GENE-1008970 InParanoid:Q66JK4
OMA:GENQWER Bgee:Q66JK4 Uniprot:Q66JK4
Length = 437
Score = 1061 (378.5 bits), Expect = 2.7e-107, P = 2.7e-107
Identities = 201/422 (47%), Positives = 291/422 (68%)
Query: 5 GPDDQTFELKQDQELRFEVENAQ-IEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTW 63
GP + FEL+++ ELR EVE + +E+ SGLAE+FG EL ++KKY FP G++ A++TW
Sbjct: 20 GPSTK-FELERETELRLEVEGTDPVRVELVSGLAEVFGTELTRNKKYTFPPGSRAAIFTW 78
Query: 64 HGCSITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGK 123
HGC++ + + ++ YVS++TPM Y+N + LE+ R++AE++ +RGP ++ GP DVGK
Sbjct: 79 HGCTVQLWGS-PDVAYVSRDTPMLLYLNTQVGLEQMRAQAEREGERGPRVLVAGPSDVGK 137
Query: 124 STLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPI 183
STLC +LLNYAVR R+P V+LDVGQG VSVPGT+GAL +ERPA +E+GFS AP+
Sbjct: 138 STLCRLLLNYAVRR---GRRPTLVELDVGQGSVSVPGTVGALCVERPADVEEGFSAQAPL 194
Query: 184 VYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMA 243
VY++G TP N++LY RL + R + + + + SG +INTCGW+KG G++ L+
Sbjct: 195 VYHFGSTTPGTNIKLYNKLTSRLAHVFNLRCDSNRRASVSGCLINTCGWVKGSGYQALIH 254
Query: 244 CAKSLRVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEY 303
A + VD +LVLDQERLYN+L+R+LP +LLPKSGG +RS++ R E+RD+R++EY
Sbjct: 255 AASAFEVDVVLVLDQERLYNDLLRDLPHFVRTLLLPKSGGASERSKECRRESRDQRVREY 314
Query: 304 FYGSRLKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPGPXXXX 363
FYG R + PH+F+IKF EV++YK+GAP +PDSC+PLG++ + K+V V PG
Sbjct: 315 FYGPRGSLY-PHAFEIKFSEVRVYKVGAPSIPDSCLPLGMSQEDNQLKLVPVTPGRDMAH 373
Query: 364 XXXXXX---XXXXESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLILTDIQY 420
E I E+++ GF+ +T VD RQ+L+VL RPLP L++ DI++
Sbjct: 374 HLLSVVPLDGGGAEEGIEERSVAGFIVITGVDTERQTLTVLSPAPRPLPKCVLLIMDIRF 433
Query: 421 MD 422
MD
Sbjct: 434 MD 435
>UNIPROTKB|Q6NS21 [details] [associations]
symbol:clp1 "Polyribonucleotide 5'-hydroxyl-kinase Clp1"
species:8355 "Xenopus laevis" [GO:0000214 "tRNA-intron endonuclease
complex" evidence=ISS] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=ISS] [GO:0030423
"targeting of mRNA for destruction involved in RNA interference"
evidence=ISS] [GO:0035087 "siRNA loading onto RISC involved in RNA
interference" evidence=ISS] [GO:0051733 "polydeoxyribonucleotide
kinase activity" evidence=ISS] [GO:0051736 "ATP-dependent
polyribonucleotide 5'-hydroxyl-kinase activity" evidence=ISS]
GO:GO:0005524 GO:GO:0006397 GO:GO:0035087 GO:GO:0030423 CTD:10978
KO:K14399 GO:GO:0000214 GO:GO:0046404 GO:GO:0051736 GO:GO:0051733
GO:GO:0006388 InterPro:IPR010655 Pfam:PF06807 EMBL:BC070530
RefSeq:NP_001084787.1 UniGene:Xl.30457 ProteinModelPortal:Q6NS21
IntAct:Q6NS21 GeneID:431824 KEGG:xla:431824 Xenbase:XB-GENE-1008976
Uniprot:Q6NS21
Length = 439
Score = 1061 (378.5 bits), Expect = 2.7e-107, P = 2.7e-107
Identities = 201/425 (47%), Positives = 292/425 (68%)
Query: 2 ATLGPDDQTFELKQDQELRFEVENAQ-IEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAV 60
++ GP + FEL+++ ELR EVE + +E+ SGLAE+FG EL ++KKY FP G++ A+
Sbjct: 19 SSTGPSTK-FELERETELRLEVEGTDPVRVELVSGLAEVFGTELTRNKKYTFPPGSRAAI 77
Query: 61 YTWHGCSITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQD 120
+TWHGC++ + + +M YVS++TPM Y+N + LE+ R +AE++ +RGP ++ GP D
Sbjct: 78 FTWHGCTVQLWGS-PDMAYVSRDTPMLLYLNTQVGLEQMRVQAEREGERGPRVLVAGPSD 136
Query: 121 VGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQL 180
VGKSTLC +LLNYAVR R+P V+LDVGQG VSVPGT+GAL +ERPA +E+GFS
Sbjct: 137 VGKSTLCRLLLNYAVRR---GRRPTLVELDVGQGSVSVPGTMGALCVERPADVEEGFSAQ 193
Query: 181 APIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKC 240
AP+VY++G TP N++LY RL + R + + + + SG +INTCGW+KG G++
Sbjct: 194 APLVYHFGSTTPGTNIKLYNKLTSRLAHVFNLRCDSNRRASVSGCLINTCGWVKGSGYQA 253
Query: 241 LMACAKSLRVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRI 300
L+ A + VD +LVLDQERLYN+L+R+LP +LLPKSGG +RS++ R E+RD+R+
Sbjct: 254 LIHAASAFEVDVVLVLDQERLYNDLLRDLPHFVRTLLLPKSGGASERSKECRRESRDQRV 313
Query: 301 KEYFYGSRLKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPGPX 360
+EYFYG R + PH+F+IKF EV++YK+GAP +PDSC+PLG++ + K+V V PG
Sbjct: 314 REYFYGPRGSLY-PHAFEIKFSEVRVYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD 372
Query: 361 XXXXXXXXX---XXXXESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLILTD 417
E I E+++ GF+ +T VD RQ+L++L RPLP L++ D
Sbjct: 373 MAHHLLSVVPLDGGSAEEGIEERSVAGFIVITGVDTERQTLTLLSPAPRPLPKCVLLIMD 432
Query: 418 IQYMD 422
I++MD
Sbjct: 433 IRFMD 437
>WB|WBGene00010304 [details] [associations]
symbol:clpf-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040015 "negative regulation of multicellular
organism growth" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0006397
GO:GO:0040035 GO:GO:0040015 eggNOG:COG5623
GeneTree:ENSGT00390000000344 HOGENOM:HOG000231935 KO:K14399
OMA:GFSVQAP InterPro:IPR010655 Pfam:PF06807 EMBL:Z34801 PIR:T22973
RefSeq:NP_001040858.1 ProteinModelPortal:P52874 SMR:P52874
DIP:DIP-27405N IntAct:P52874 MINT:MINT-1083690 STRING:P52874
PaxDb:P52874 EnsemblMetazoa:F59A2.4a GeneID:175442
KEGG:cel:CELE_F59A2.4 UCSC:F59A2.4a CTD:175442 WormBase:F59A2.4a
InParanoid:P52874 NextBio:888178 ArrayExpress:P52874 Uniprot:P52874
Length = 428
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 169/422 (40%), Positives = 268/422 (63%)
Query: 9 QTFELKQDQELRFEV-ENAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCS 67
Q F LK+D ELRF +++ + +E+ G AEIFG EL+ +KKY FP ++ A +TW G +
Sbjct: 7 QEFVLKEDCELRFAAGDDSDVCLELVKGYAEIFGTELLLNKKYTFPAKSRVAAFTWKGAT 66
Query: 68 ITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSK------RGPITMIVGPQDV 121
I + ++ YV++ TPM Y+N+H +E+ R + E+Q+ +GP ++VGP DV
Sbjct: 67 IELVGTTES-AYVAESTPMVIYLNIHAAMEEVRKKREEQAAGNSNKAKGPRLLLVGPTDV 125
Query: 122 GKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLA 181
GK+T+ IL NY+VR R PIFV+LDVGQ VSVPGT+ A+++++ A + DGF +
Sbjct: 126 GKTTVSRILCNYSVRQ---GRTPIFVELDVGQNSVSVPGTVAAVLVQKTADVIDGFERNQ 182
Query: 182 PIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCL 241
PIV+N+GH +P+ANL LY+ + + +++ ++ ++ + GMIINTCGW+ G+G+KC+
Sbjct: 183 PIVFNFGHTSPSANLSLYEALFKEMATTLNAQIQENDEAKIGGMIINTCGWVDGEGYKCI 242
Query: 242 MACAKSLRVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIK 301
+ A + VD ++VLD ERLY++L +ELP+ + +PKSGGV R+ Q R++ R + +
Sbjct: 243 VKAASAFEVDVVIVLDHERLYSDLSKELPEFVRLTHVPKSGGVEQRTGQIRSKMRGENVH 302
Query: 302 EYFYGSRLKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPGPXX 361
YFYG+R P +FD+ F +V + KIGA LPDSC+P G+ TK+V+++P
Sbjct: 303 RYFYGTRANNLYPFTFDVSFDDVTLCKIGAEQLPDSCLPFGMEVENHETKLVIMEPSADI 362
Query: 362 XXXXXXXXXXXXESE-ILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLILTDIQY 420
E +L+ + GF VT VD+ ++++S+LC Q R +P L+ +DI +
Sbjct: 363 KHHLFAFSRSTKADENVLKSPVFGFCLVTEVDLEKRTMSILCPQ-RTIPSKVLVFSDITH 421
Query: 421 MD 422
+D
Sbjct: 422 LD 423
>TAIR|locus:2084938 [details] [associations]
symbol:CLPS3 "CLP-similar protein 3" species:3702
"Arabidopsis thaliana" [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005849 "mRNA cleavage
factor complex" evidence=ISS;IPI] [GO:0006777 "Mo-molybdopterin
cofactor biosynthetic process" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006397 "mRNA processing"
evidence=RCA;IMP] [GO:0009908 "flower development" evidence=IMP]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA;IMP] [GO:0048827 "phyllome development"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0009933 "meristem structural organization"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0016567 "protein ubiquitination" evidence=RCA] [GO:0019915
"lipid storage" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006397 GO:GO:0010228
GO:GO:0009908 EMBL:AC011437 eggNOG:COG5623 HOGENOM:HOG000231935
KO:K14399 OMA:GFSVQAP InterPro:IPR010655 Pfam:PF06807 GO:GO:0005849
GO:GO:0048827 ProtClustDB:CLSN2684287 EMBL:AY062866 EMBL:AY128751
IPI:IPI00524800 RefSeq:NP_187119.1 RefSeq:NP_974220.1
UniGene:At.27208 SMR:Q9SR06 IntAct:Q9SR06 STRING:Q9SR06
EnsemblPlants:AT3G04680.1 EnsemblPlants:AT3G04680.2 GeneID:819626
KEGG:ath:AT3G04680 TAIR:At3g04680 InParanoid:Q9SR06
Genevestigator:Q9SR06 Uniprot:Q9SR06
Length = 444
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 149/421 (35%), Positives = 237/421 (56%)
Query: 12 ELKQDQELRFEVENAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSITMK 71
+L+++ ELR EV + + V +G AEIFG EL FP K AV+TW+G +I M
Sbjct: 27 KLERESELRIEVSEEPLRLRVVNGTAEIFGSELPPEIWRTFPPRMKFAVFTWYGATIEMD 86
Query: 72 NARKNMTYVSKETPMNYYMNVHIILEKQRSEA------EQQSKRGPITMIVGPQDVGKST 125
+ Y + ETPM Y+NVH IL+ +R A + +S +GP ++VGP D GKST
Sbjct: 87 GVTET-DYTADETPMVSYINVHAILDARRRFAKASTSNDPESSQGPRVIVVGPTDSGKST 145
Query: 126 LCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVY 185
L +LL++A + +P FVDLDVGQG +++PG+I A IE P +GF +VY
Sbjct: 146 LTKMLLSWAAKQ---GWRPTFVDLDVGQGSITIPGSIAAAPIEMPLDPVEGFPLDMALVY 202
Query: 186 NYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACA 245
YGH +PN N+ELY+ V+ L + ++++ + ++ ++GM+INT GWI+G G++ L+
Sbjct: 203 YYGHASPNMNVELYKALVKELAQVLEKQFVGNPESRAAGMVINTMGWIEGIGYELLLHAI 262
Query: 246 KSLRVDNILVLDQERLYNEL--IRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEY 303
+ +LVL QE+L++ L + + DVV L KSGGVV R ++ R +R+ +I+EY
Sbjct: 263 DTFNASVVLVLGQEKLFSRLKDVLRSKSNVDVVKLHKSGGVVARVKEVRKRSRNFKIQEY 322
Query: 304 FYGSRLKPFNPHSFDIKFGEVQIYKIGA-PVLPDSCMPLGVTATEFLTKVVLVQPGPXXX 362
FYG K +P++ F ++Q+++IG P P S +P G T+ +V V
Sbjct: 323 FYGLS-KELSPYANTSSFSDLQVFRIGGGPQAPKSALPAGSTSVSNPLRVTPVNIDDRDL 381
Query: 363 XXXXXXXXXXXE-SEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLILTDIQYM 421
E +I+ N+ GFV VT V++ ++ ++ L LP L+ + ++
Sbjct: 382 LHSVLAVSYAEEPDQIISSNVSGFVYVTEVNVQKKKITYLAPSPGTLPSKLLVAGSLAWL 441
Query: 422 D 422
+
Sbjct: 442 E 442
>DICTYBASE|DDB_G0285507 [details] [associations]
symbol:clp1 "pre-mRNA cleavage complex subunit"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] dictyBase:DDB_G0285507
GO:GO:0005524 GO:GO:0005634 GenomeReviews:CM000153_GR
EMBL:AAFI02000079 GO:GO:0006397 eggNOG:COG5623 KO:K14399
OMA:GFSVQAP InterPro:IPR010655 Pfam:PF06807 RefSeq:XP_638095.1
ProteinModelPortal:Q54N48 STRING:Q54N48 EnsemblProtists:DDB0235305
GeneID:8625143 KEGG:ddi:DDB_G0285507 InParanoid:Q54N48
ProtClustDB:CLSZ2728913 Uniprot:Q54N48
Length = 459
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 147/416 (35%), Positives = 227/416 (54%)
Query: 13 LKQDQELRFEVENAQIE-IEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSITMK 71
L+ QELR+E++ Q +++ G AE FG EL +K Y G KGAV+TW GC I +
Sbjct: 50 LEITQELRYEIDFDQNGWMKLIEGTAECFGTELSLNKVYKLS-GTKGAVFTWTGCKIEIT 108
Query: 72 NARKNMTYVSKETPMNYYMNVHIILEKQR-SEAEQQSKRGPITMIVGPQDVGKSTLCHIL 130
N Y+ ++TPM Y V+ L+ R S ++ K GP +IVGP D GKS+L IL
Sbjct: 109 N--NCQPYIGEKTPMPQYAGVYQELDAFRVSILDEPKKSGPRVIIVGPTDSGKSSLSKIL 166
Query: 131 LNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHL 190
L Y+ R +P+FVDLD GQG +++PGTI A I+ P IE+G + P+ + YGH
Sbjct: 167 LAYSARS---GYQPLFVDLDPGQGSITIPGTISAAHIQNPLDIEEGLAGGIPLAHFYGHT 223
Query: 191 TPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRV 250
+ + N +L++ + L +D++++ + + SG I NTCGWI G G+K L+ +
Sbjct: 224 SLDVNPDLFKALCKNLASFIDKQLDSSNISRISGFIANTCGWIDGLGYKILLQNIDVFKA 283
Query: 251 DNILVLDQERLYNEL---IRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGS 307
+ I+V+D E+LY+++ + S ++ LPKSGGV R FR + R RIKEYF G
Sbjct: 284 NLIIVMDNEKLYSDISSHYSQKDNSIKIIKLPKSGGVFIRPPVFRKKTRMNRIKEYFNGI 343
Query: 308 RLKPFNPHSFDIKFGEVQIYKIGA-PVLPDSCMPLGVTATEFLTKVVLVQPGPXXXXXXX 366
+PH + F +V IY+ G P P S +P+G ++ ++ V P
Sbjct: 344 N-DNLSPHYIVLDFKDVSIYRTGGGPAAPASALPIGTSSQIDPLQITEVYPSLDMCHSIF 402
Query: 367 XXXXXXXESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLILTDIQYMD 422
S I N+ GF+ V+ +DM + ++V+ PLP L+L +++M+
Sbjct: 403 AISYAKQASNIFHSNVAGFLYVSDIDMETKKITVISPAPGPLPSRFLLLGTLKWME 458
>TAIR|locus:2178072 [details] [associations]
symbol:CLPS5 "CLP1-similar protein 5" species:3702
"Arabidopsis thaliana" [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006777 "Mo-molybdopterin
cofactor biosynthetic process" evidence=IEA] EMBL:CP002688
GenomeReviews:BA000015_GR eggNOG:COG5623 HOGENOM:HOG000231935
KO:K14399 InterPro:IPR010655 Pfam:PF06807 EMBL:AB010077
EMBL:AY954872 IPI:IPI00548866 RefSeq:NP_198809.2 UniGene:At.55267
ProteinModelPortal:Q9FLE2 SMR:Q9FLE2 IntAct:Q9FLE2 STRING:Q9FLE2
EnsemblPlants:AT5G39930.1 GeneID:833990 KEGG:ath:AT5G39930
TAIR:At5g39930 InParanoid:Q9FLE2 OMA:EYISCET PhylomeDB:Q9FLE2
ProtClustDB:CLSN2684287 Genevestigator:Q9FLE2 Uniprot:Q9FLE2
Length = 424
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 137/421 (32%), Positives = 217/421 (51%)
Query: 5 GPDDQTFELKQDQELRFEVE-NAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTW 63
GP + +L++ ELR E++ + + + + G AEIFG EL FP AV+TW
Sbjct: 3 GPQIRRVKLEKQSELRIELQPTSPLRLRLLDGKAEIFGYELPHEVWITFPPLMTFAVFTW 62
Query: 64 HGCSITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQ------SKRGPITMIVG 117
+G +I + N Y+S ETPM Y+ +H L+ QR S+ GP +IVG
Sbjct: 63 YGATIEIDGITGN-EYISCETPMVNYLGLHNSLQVQRHRVTSSTRDSASSQEGPRVIIVG 121
Query: 118 PQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGF 177
D GKSTL +LLN+AV+ G KP FVDL+VGQ +++PGTI A I+ +GF
Sbjct: 122 DIDSGKSTLAKMLLNWAVK-DGW--KPTFVDLNVGQSSITIPGTIAAAPIKMLVDPVEGF 178
Query: 178 SQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDG 237
+++ +G P+ NL LY+ VE L + + E + ++++ +SGM+I+T G+I +G
Sbjct: 179 PLDKALIHYFGLTNPSVNLRLYRTLVEELARELKEEFSANAESRASGMVIDTMGFIVREG 238
Query: 238 FKCLMACAKSLRVDNILVLDQE-RLYNELIRELP--KSYDVVLLPKSGGVVDRSRQFRAE 294
+ L+ ++ ++V+ QE +L +L + L K+ V+ L KS GV RS FR
Sbjct: 239 YALLLHAIRTFNASLVIVVGQEEKLVYDLKKNLKFKKNLQVLNLEKSEGVFSRSSDFRKT 298
Query: 295 ARDKRIKEYFYGSRLKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVL 354
R+ I+ YFYG ++ +KF +VQ+Y+IG + S + L K+ L
Sbjct: 299 LRNSNIQNYFYGVT-NDLTVYTKTVKFSDVQVYRIGDFRVSGSTSA-HQRGNDPL-KITL 355
Query: 355 VQPGPXXXXXXXXXXXXXXESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLI 414
V +I+ + GFVC+ +VD+ + ++ + A LP LI
Sbjct: 356 VTIDEHLVNKVLAISYAIKPDQIISSIVAGFVCIKNVDISEERITYVSPSAAELPSKILI 415
Query: 415 L 415
L
Sbjct: 416 L 416
>POMBASE|SPAC22H10.05c [details] [associations]
symbol:SPAC22H10.05c "mRNA cleavage and
polyadenylation specificity factor complex subunit (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0005849 "mRNA cleavage factor complex"
evidence=ISO] [GO:0006378 "mRNA polyadenylation" evidence=ISO]
[GO:0006379 "mRNA cleavage" evidence=ISO] [GO:0031124 "mRNA 3'-end
processing" evidence=ISO] PomBase:SPAC22H10.05c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0006378 GO:GO:0006379
eggNOG:COG5623 HOGENOM:HOG000231935 KO:K14399 OMA:GFSVQAP
InterPro:IPR010655 Pfam:PF06807 OrthoDB:EOG4FFH9N PIR:T38207
RefSeq:NP_593741.1 ProteinModelPortal:Q10299 STRING:Q10299
EnsemblFungi:SPAC22H10.05c.1 GeneID:2541907 KEGG:spo:SPAC22H10.05c
NextBio:20802994 GO:GO:0005849 Uniprot:Q10299
Length = 456
Score = 330 (121.2 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 84/235 (35%), Positives = 132/235 (56%)
Query: 13 LKQDQELRFEVENAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSITMKN 72
+ ++ E RFEV+ I+I + SG AE FG EL Y F KGA+YTW GC++ ++
Sbjct: 6 IPKECEWRFEVDEPAIQIRLVSGNAEYFGTELALGPPYHFT-RVKGAIYTWQGCTLEVEG 64
Query: 73 ARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQ-----QSKRGPITMIVGPQDVGKSTLC 127
++ YV++ETPM+ Y+N+H LE R +AE +S GP ++GP+ GK+++
Sbjct: 65 -EPSVEYVAEETPMSTYLNLHFALEGLRLQAENAAANDESSYGPCVCLIGPRSCGKTSVL 123
Query: 128 HILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIED--GFSQ------ 179
IL +YA++ +R PI V+LD Q +++PG+I A I+D GF
Sbjct: 124 KILESYALKQ---SRHPICVNLDPTQPMLALPGSISAFHNATILDIQDADGFGASTSTGP 180
Query: 180 ---LA--PIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINT 229
LA P+VYN+G +P N +LY+ + RL +V RM++ SG +++T
Sbjct: 181 THVLAKVPLVYNFGLDSPLDNPKLYKLSLSRLALAVHSRMSQSKDARVSGCLVDT 235
Score = 228 (85.3 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 75/266 (28%), Positives = 133/266 (50%)
Query: 96 LEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAV---RMP-GLNRKPIFVDLDV 151
L+ + + A +S GP ++GP+ GK+++ IL +YA+ R P +N P L +
Sbjct: 92 LQAENAAANDESSYGPCVCLIGPRSCGKTSVLKILESYALKQSRHPICVNLDPTQPMLAL 151
Query: 152 GQGHVSVPGTIGALVIERP----ATIEDGFSQL---APIVYNYGHLTPNANLELYQHCVE 204
G +S L I+ A+ G + + P+VYN+G +P N +LY+ +
Sbjct: 152 -PGSISAFHNATILDIQDADGFGASTSTGPTHVLAKVPLVYNFGLDSPLDNPKLYKLSLS 210
Query: 205 RLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFK---CLMACAKSLRVDNILVLDQERL 261
RL +V RM++ SG +++T I+ + K L + R++ I+VL ERL
Sbjct: 211 RLALAVHSRMSQSKDARVSGCLVDTSS-IQENAEKYQDILHSIITDFRINIIIVLGSERL 269
Query: 262 YNELIRELPKS--YDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSRLKPFNPHSFDI 319
Y+ + R+ + VV + SGG +DR ++ + + + IK+YFYG P +P S +
Sbjct: 270 YSSMKRKYADATWLSVVKVSSSGGCIDREEEWIQQFQARCIKQYFYGDDRMPLSPLSMIV 329
Query: 320 KFGEVQIYKI--GAPVLP-DSCMPLG 342
++ +Y++ + P S +PLG
Sbjct: 330 DSTQLVVYRVLEASESGPKSSVLPLG 355
Score = 60 (26.2 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 12/49 (24%), Positives = 29/49 (59%)
Query: 374 ESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLILTDIQYMD 422
E+ +++ I+G+V V+ VD ++ +++L LP + LI+ ++ +
Sbjct: 408 EATVVDSCIIGYVFVSDVDDVKNRMTLLSPVPEQLPSNALIMGTCKWQE 456
>ASPGD|ASPL0000054763 [details] [associations]
symbol:AN0161 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] GO:GO:0005524 GO:GO:0005634
EMBL:BN001308 GO:GO:0006397 eggNOG:COG5623 HOGENOM:HOG000231935
KO:K14399 InterPro:IPR010655 Pfam:PF06807 EMBL:AACD01000005
RefSeq:XP_657765.1 GeneID:2875940 KEGG:ani:AN0161.2 OMA:WRFEVAF
OrthoDB:EOG4FFH9N Uniprot:Q5BH19
Length = 546
Score = 278 (102.9 bits), Expect = 4.8e-33, Sum P(3) = 4.8e-33
Identities = 73/211 (34%), Positives = 115/211 (54%)
Query: 79 YVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMP 138
Y+++ETPM Y NVH LE R+EA+ + GP +I+GP+D GK++L IL YAV++
Sbjct: 114 YIAEETPMVEYANVHFALEGLRAEAKASGRDGPRVLILGPEDAGKTSLSKILTAYAVKV- 172
Query: 139 GLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGF--SQLA---------PIVYNY 187
R+PI V+LD +G +SVPGT+ A +E+G+ S ++ P+VY Y
Sbjct: 173 --GREPIVVNLDPTEGMLSVPGTVSATAFRAMLDVEEGWGSSPMSGPSAVPVKLPLVYFY 230
Query: 188 GHLTP-NANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWI---KGDGFKCLMA 243
+ P A +++ V RL SV RM +D +G+I++T G + + + +
Sbjct: 231 PIVNPLEAEGSVFRPIVSRLALSVMGRMAEDEDAKETGIIVDTPGILSQSRAGALEMINH 290
Query: 244 CAKSLRVDNILVLDQERLYNELIRELPKSYD 274
+ ILV+ ERLY+ ++ KSYD
Sbjct: 291 IVTEFSITTILVIGSERLYSLMM----KSYD 317
Score = 132 (51.5 bits), Expect = 4.8e-33, Sum P(3) = 4.8e-33
Identities = 27/64 (42%), Positives = 37/64 (57%)
Query: 6 PDDQTFELKQDQELRFEVE-NAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWH 64
P Q L E RFEV + +++ +G AE+FG EL S+ Y F G K A+YTWH
Sbjct: 21 PPTQ-INLSAGSEWRFEVAFGTTVRVKLLTGTAELFGTELAPSQTYTFS-GTKAAIYTWH 78
Query: 65 GCSI 68
GC++
Sbjct: 79 GCTL 82
Score = 122 (48.0 bits), Expect = 3.3e-14, Sum P(3) = 3.3e-14
Identities = 37/126 (29%), Positives = 60/126 (47%)
Query: 198 LYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWI---KGDGFKCLMACAKSLRVDNIL 254
+++ V RL SV RM +D +G+I++T G + + + + + IL
Sbjct: 242 VFRPIVSRLALSVMGRMAEDEDAKETGIIVDTPGILSQSRAGALEMINHIVTEFSITTIL 301
Query: 255 VLDQERLYNELIREL---PKS----------YDVVLLPKSGGVVDRSRQFRAEARDKRIK 301
V+ ERLY+ +++ P S VV L KSGG VDR F R+ +I+
Sbjct: 302 VIGSERLYSLMMKSYDNKPSSSASSAASDERISVVKLSKSGGCVDRDAAFMKAVRESQIR 361
Query: 302 EYFYGS 307
YF+G+
Sbjct: 362 TYFFGN 367
Score = 47 (21.6 bits), Expect = 4.8e-33, Sum P(3) = 4.8e-33
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 375 SEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLI 414
SEI + + +GF+ V VD R + VL +P +I
Sbjct: 493 SEIRDASTMGFLYVADVDSERGKIRVLAPVGGRVPSRAII 532
>SGD|S000005776 [details] [associations]
symbol:CLP1 "Component of the cleavage and polyadenylation
factor I (CF I)" species:4932 "Saccharomyces cerevisiae"
[GO:0006378 "mRNA polyadenylation" evidence=IDA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IPI] [GO:0006379 "mRNA cleavage"
evidence=IDA] [GO:0031124 "mRNA 3'-end processing" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] SGD:S000005776 GO:GO:0005524 EMBL:BK006948
GO:GO:0006378 GO:GO:0006379 eggNOG:COG5623
GeneTree:ENSGT00390000000344 HOGENOM:HOG000231935 KO:K14399
OMA:GFSVQAP InterPro:IPR010655 Pfam:PF06807 OrthoDB:EOG4FFH9N
GO:GO:0005849 EMBL:Z75158 EMBL:AY558048 PIR:S67147
RefSeq:NP_014893.1 PDB:2NPI PDBsum:2NPI ProteinModelPortal:Q08685
SMR:Q08685 DIP:DIP-1487N IntAct:Q08685 MINT:MINT-394953
STRING:Q08685 PaxDb:Q08685 PeptideAtlas:Q08685 EnsemblFungi:YOR250C
GeneID:854424 KEGG:sce:YOR250C CYGD:YOR250c
EvolutionaryTrace:Q08685 NextBio:976637 Genevestigator:Q08685
GermOnline:YOR250C Uniprot:Q08685
Length = 445
Score = 317 (116.6 bits), Expect = 9.3e-28, P = 9.3e-28
Identities = 110/427 (25%), Positives = 191/427 (44%)
Query: 16 DQELRFEVENAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWHGCSITMK--NA 73
D ++ + E I ++V SG+ EIFG EL +Y F K +Y + K +
Sbjct: 33 DWQIDLKAEGKLI-VKVNSGIVEIFGTELAVDDEYTFQ-NWKFPIYAVEETELLWKCPDL 90
Query: 74 RKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNY 133
N V M Y N+H +LEK R + GP +IVG GK++L L +Y
Sbjct: 91 TTNTITVKPNHTMKYIYNLHFMLEKIR----MSNFEGPRVVIVGGSQTGKTSLSRTLCSY 146
Query: 134 AVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI------ERPA---TIEDGFSQL---A 181
A++ +P++++LD Q +VPG I A I + P ++ G + L
Sbjct: 147 ALKFNAY--QPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQ 204
Query: 182 PIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGD-GFKC 240
P+V N+G N N +LY C+ +L + V +R++ D + SG I++T + D
Sbjct: 205 PMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAE 264
Query: 241 LMACAKSLRVDNILVLDQER--LYNELIREL-PK--SYDVVLLPKSGGVVDRSRQFRAEA 295
L + L V+ +LVL E L+ ++ + P+ + ++ +PK GV ++
Sbjct: 265 LHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDDVYKRSL 324
Query: 296 RDKRIKEYFYGSRLKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVVLV 355
+ I+EYFYGS +P++ + + ++ I+K P + V E +
Sbjct: 325 QRTSIREYFYGSLDTALSPYAIGVDYEDLTIWK------PSNVFDNEVGRVELFPVTITP 378
Query: 356 QPGPXXXXXXXXXXXXXXESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLIL 415
++ +++ I+GF +T V+ R+ L VL LP +IL
Sbjct: 379 SNLQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAMIL 438
Query: 416 TDIQYMD 422
T +Y++
Sbjct: 439 TSYRYLE 445
>UNIPROTKB|A4QQE0 [details] [associations]
symbol:CLP1 "Protein CLP1" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] GO:GO:0005634
GO:GO:0006397 EMBL:CM001236 eggNOG:COG5623 KO:K14399
InterPro:IPR010655 Pfam:PF06807 OrthoDB:EOG4FFH9N
RefSeq:XP_003719167.1 STRING:A4QQE0 GeneID:2678970
KEGG:mgr:MGG_08804 Uniprot:A4QQE0
Length = 455
Score = 272 (100.8 bits), Expect = 2.1e-21, P = 2.1e-21
Identities = 92/353 (26%), Positives = 155/353 (43%)
Query: 2 ATLGPDDQTFELKQDQELRFEVENAQIEIEVTSGLAEIFGVELVKSKKY-LFPIGAKGAV 60
AT T E +Q+ A I I +T G AE G EL + Y L + +K
Sbjct: 14 ATSASRTYTLEPRQEYRFSVS-HGASITITLTRGTAERDGTELALNVAYTLSGVKSKILS 72
Query: 61 YTWHGCSITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQS------KRGPITM 114
+ SI +++ + ++N+H L++ R A + + GP +
Sbjct: 73 WHGANLSIEGITDHESVAGPD-DAANTAHLNLHAFLQRSREAAARNNGGGRSAPHGPRVL 131
Query: 115 IVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATI- 173
+ G G+++L L +A R +P+ VD D G+G +++PGT+ A V +
Sbjct: 132 VAGKTGCGRTSLVRTLAAWATRT---GAQPMVVDADPGEGLLTLPGTLSAAVFGTVMDVA 188
Query: 174 -EDGFSQLA-----------PIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTN 221
E G+ P+V+ YG + +LY+ V + ++ R D
Sbjct: 189 SEGGWGAAPSSGPSAVPVKLPLVFYYGRRRVEEDRDLYKGVVNSISSAISARAADDPAVR 248
Query: 222 SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNELIRE-------LPKSYD 274
S+GM+I+T +++G G L+ A+ L V+ I+ +D L+ EL + L +
Sbjct: 249 SAGMLIDTPPYVEGKGADVLIHIAEELNVNIIVTIDTPSLHTELTQRFSGVKNVLGEHVS 308
Query: 275 VVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSRLKPFNPHSFDIKFGEVQIY 327
VV L KS GV++R F + IKEYF+G +P + + F E+ IY
Sbjct: 309 VVALDKSSGVMERDEGFLQHMGEASIKEYFFGDAKITLSPFTQQVAFDELAIY 361
Score = 239 (89.2 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 83/320 (25%), Positives = 138/320 (43%)
Query: 105 QQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGA 164
+ + GP ++ G G+++L L +A R +P+ VD D G+G +++PGT+ A
Sbjct: 122 RSAPHGPRVLVAGKTGCGRTSLVRTLAAWATRT---GAQPMVVDADPGEGLLTLPGTLSA 178
Query: 165 LVIERPATI--EDGFSQLA-----------PIVYNYGHLTPNANLELYQHCVERLWKSVD 211
V + E G+ P+V+ YG + +LY+ V + ++
Sbjct: 179 AVFGTVMDVASEGGWGAAPSSGPSAVPVKLPLVFYYGRRRVEEDRDLYKGVVNSISSAIS 238
Query: 212 ERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNELIRE--- 268
R D S+GM+I+T +++G G L+ A+ L V+ I+ +D L+ EL +
Sbjct: 239 ARAADDPAVRSAGMLIDTPPYVEGKGADVLIHIAEELNVNIIVTIDTPSLHTELTQRFSG 298
Query: 269 ----LPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSRLKPFNPHSFDIKFGEV 324
L + VV L KS GV++R F + IKEYF+G +P + + F E+
Sbjct: 299 VKNVLGEHVSVVALDKSSGVMERDEGFLQHMGEASIKEYFFGDAKITLSPFTQQVAFDEL 358
Query: 325 QIYKIGAPVLPDSCMPLGVTATEFLTKVVLVQPGPXXXXXXXXXXXXXXES---EILEQN 381
IY +P D G L ++ QP P +I
Sbjct: 359 AIYT--SPEASDYSAEPGA-----LERIP--QPLPEMAHWVLAMMDAAPNDPPHKIRYAP 409
Query: 382 IVGFVCVTHVDMLRQSLSVL 401
+ GFV V VD R+ + +L
Sbjct: 410 VSGFVYVAAVDKERRRMKIL 429
>CGD|CAL0000231 [details] [associations]
symbol:orf19.6931 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
CGD:CAL0000231 GO:GO:0005524 GO:GO:0005634 GO:GO:0042493
GO:GO:0006397 EMBL:AACQ01000148 EMBL:AACQ01000147 eggNOG:COG5623
KO:K14399 InterPro:IPR010655 Pfam:PF06807 RefSeq:XP_712695.1
RefSeq:XP_712732.1 ProteinModelPortal:Q59ST8 STRING:Q59ST8
GeneID:3645628 GeneID:3645681 KEGG:cal:CaO19.14193
KEGG:cal:CaO19.6931 Uniprot:Q59ST8
Length = 489
Score = 248 (92.4 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 72/244 (29%), Positives = 125/244 (51%)
Query: 101 SEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160
S + Q + GP +I+G + GK+T+ IL YA +M N P+ V+L G ++PG
Sbjct: 133 SSSIDQQQSGPKVLIIGSKYSGKTTVSKILSAYANKM---NNTPVLVNLQPRDGVFALPG 189
Query: 161 TIGALVIERPATIE--DGFSQLA-----------PIVYNYGHLTPNANLELYQHCVERLW 207
++ A I +E +G+ PIV N+G N N++ Y+ +E+L
Sbjct: 190 SLTATPISDSFDVESCNGYGLTTTSGTLVHNPKQPIVKNFGMADFNDNVDFYKLLIEKLG 249
Query: 208 KSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNELIR 267
+V R+++D +SG+II+T + F + + + +DNI+V+ ERL EL +
Sbjct: 250 IAVLSRLDQDLNIKNSGVIIDTPA-LTSKNFDIVESMVSNFLIDNIIVIGNERLAIELTK 308
Query: 268 ELP-KS--YDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSRLKPFNPHSFDIKFGEV 324
+ KS +++ L KS G ++ +F +++ IKEYF G+ +P DI+ +
Sbjct: 309 KFAYKSTQLNIIKLNKSSGCIEVEDRFIRLQQEQTIKEYFNGNFKTRLSPFKTDIELSGL 368
Query: 325 QIYK 328
+IYK
Sbjct: 369 KIYK 372
Score = 147 (56.8 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 53/187 (28%), Positives = 90/187 (48%)
Query: 10 TFELKQDQELRFEVE-NAQIEIEVTSGLAEIFGVELVKS--------KKYLF-PIGAKGA 59
T + Q E R EV N ++ +V +G+ EI G EL + K YL+ P+
Sbjct: 20 TLTIPQSYEWRIEVPFNRILKFKVLTGIVEINGTELANNTEIQLSGTKTYLYSPVTDAVI 79
Query: 60 VYTW--HGCSITMKNARKN--MTYVSKETPMNYYMNVHIILEKQR--------SEAEQQS 107
Y + +++ +A + Y+S E+ M+ +N+H+ LE +R S + Q
Sbjct: 80 EYVLVENKDDLSLVSASDEGFVEYLSDESNMDSILNLHMYLESKRQYTKDYNFSSSIDQQ 139
Query: 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI 167
+ GP +I+G + GK+T+ IL YA +M N P+ V+L G ++PG++ A I
Sbjct: 140 QSGPKVLIIGSKYSGKTTVSKILSAYANKM---NNTPVLVNLQPRDGVFALPGSLTATPI 196
Query: 168 ERPATIE 174
+E
Sbjct: 197 SDSFDVE 203
Score = 50 (22.7 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 376 EILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLILTDIQY 420
++L +++G++ V+ D ++ L VL P + LI T+I Y
Sbjct: 443 DLLNTSVLGYIHVSKFDDQKKRLKVLFPFPGVFPKNVLISTNIGY 487
>UNIPROTKB|Q59ST8 [details] [associations]
symbol:CLP1 "Protein CLP1" species:237561 "Candida albicans
SC5314" [GO:0042493 "response to drug" evidence=IMP] CGD:CAL0000231
GO:GO:0005524 GO:GO:0005634 GO:GO:0042493 GO:GO:0006397
EMBL:AACQ01000148 EMBL:AACQ01000147 eggNOG:COG5623 KO:K14399
InterPro:IPR010655 Pfam:PF06807 RefSeq:XP_712695.1
RefSeq:XP_712732.1 ProteinModelPortal:Q59ST8 STRING:Q59ST8
GeneID:3645628 GeneID:3645681 KEGG:cal:CaO19.14193
KEGG:cal:CaO19.6931 Uniprot:Q59ST8
Length = 489
Score = 248 (92.4 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 72/244 (29%), Positives = 125/244 (51%)
Query: 101 SEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160
S + Q + GP +I+G + GK+T+ IL YA +M N P+ V+L G ++PG
Sbjct: 133 SSSIDQQQSGPKVLIIGSKYSGKTTVSKILSAYANKM---NNTPVLVNLQPRDGVFALPG 189
Query: 161 TIGALVIERPATIE--DGFSQLA-----------PIVYNYGHLTPNANLELYQHCVERLW 207
++ A I +E +G+ PIV N+G N N++ Y+ +E+L
Sbjct: 190 SLTATPISDSFDVESCNGYGLTTTSGTLVHNPKQPIVKNFGMADFNDNVDFYKLLIEKLG 249
Query: 208 KSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNELIR 267
+V R+++D +SG+II+T + F + + + +DNI+V+ ERL EL +
Sbjct: 250 IAVLSRLDQDLNIKNSGVIIDTPA-LTSKNFDIVESMVSNFLIDNIIVIGNERLAIELTK 308
Query: 268 ELP-KS--YDVVLLPKSGGVVDRSRQFRAEARDKRIKEYFYGSRLKPFNPHSFDIKFGEV 324
+ KS +++ L KS G ++ +F +++ IKEYF G+ +P DI+ +
Sbjct: 309 KFAYKSTQLNIIKLNKSSGCIEVEDRFIRLQQEQTIKEYFNGNFKTRLSPFKTDIELSGL 368
Query: 325 QIYK 328
+IYK
Sbjct: 369 KIYK 372
Score = 147 (56.8 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 53/187 (28%), Positives = 90/187 (48%)
Query: 10 TFELKQDQELRFEVE-NAQIEIEVTSGLAEIFGVELVKS--------KKYLF-PIGAKGA 59
T + Q E R EV N ++ +V +G+ EI G EL + K YL+ P+
Sbjct: 20 TLTIPQSYEWRIEVPFNRILKFKVLTGIVEINGTELANNTEIQLSGTKTYLYSPVTDAVI 79
Query: 60 VYTW--HGCSITMKNARKN--MTYVSKETPMNYYMNVHIILEKQR--------SEAEQQS 107
Y + +++ +A + Y+S E+ M+ +N+H+ LE +R S + Q
Sbjct: 80 EYVLVENKDDLSLVSASDEGFVEYLSDESNMDSILNLHMYLESKRQYTKDYNFSSSIDQQ 139
Query: 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI 167
+ GP +I+G + GK+T+ IL YA +M N P+ V+L G ++PG++ A I
Sbjct: 140 QSGPKVLIIGSKYSGKTTVSKILSAYANKM---NNTPVLVNLQPRDGVFALPGSLTATPI 196
Query: 168 ERPATIE 174
+E
Sbjct: 197 SDSFDVE 203
Score = 50 (22.7 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 376 EILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLILTDIQY 420
++L +++G++ V+ D ++ L VL P + LI T+I Y
Sbjct: 443 DLLNTSVLGYIHVSKFDDQKKRLKVLFPFPGVFPKNVLISTNIGY 487
>UNIPROTKB|Q4IR18 [details] [associations]
symbol:GRC3 "Polynucleotide 5'-hydroxyl-kinase GRC3"
species:229533 "Gibberella zeae PH-1" [GO:0006364 "rRNA processing"
evidence=ISS] [GO:0051731 "polynucleotide 5'-hydroxyl-kinase
activity" evidence=ISS] GO:GO:0005524 GO:GO:0005730 GO:GO:0006364
eggNOG:COG1341 GO:GO:0051731 ProteinModelPortal:Q4IR18 PRIDE:Q4IR18
EnsemblFungi:FGSG_00340T0 Uniprot:Q4IR18
Length = 720
Score = 143 (55.4 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 50/209 (23%), Positives = 93/209 (44%)
Query: 67 SITMKNARKNMTYVSKETPMNYYMNVHII---LEKQRSEAEQQSKRGPI--TMIVGPQDV 121
S T K + + Y S++ P + + K+ S S++ P T+I GP+
Sbjct: 230 SKTSKESTFEIIYTSEDAPKKCIIQKLVSPPEWNKKLSSLVATSRKKPSLSTLICGPKSA 289
Query: 122 GKSTLCHILLNYAV----RMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGF 177
GKST + LN + + G R + +DLD GQ + PGT+ + + +P + F
Sbjct: 290 GKSTFSRLFLNGLLTDRSQKQGA-RSVVILDLDPGQPEYAPPGTLSLVFVTKP-NLGTPF 347
Query: 178 SQLA------PIV--YNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINT 229
+ + +V ++ TP N +LY C L+ + + + + +I+NT
Sbjct: 348 THPSLKNSAFTVVRSHSMASATPAPNPDLYLACATDLFDTYSKHYS------GAPLIVNT 401
Query: 230 CGWIKGDGFKCLMACAKSLRVDNILVLDQ 258
GWI+G G L + + ++ +L + +
Sbjct: 402 PGWIQGTGLDLLSSLIEKIKPQEVLYMSE 430
>UNIPROTKB|G3V7B0 [details] [associations]
symbol:Nol9 "Protein Nol9" species:10116 "Rattus
norvegicus" [GO:0000460 "maturation of 5.8S rRNA" evidence=IEA]
[GO:0051731 "polynucleotide 5'-hydroxyl-kinase activity"
evidence=IEA] RGD:1566167 InterPro:IPR010655 Pfam:PF06807
EMBL:CH473968 CTD:79707 GeneTree:ENSGT00390000012406 OMA:TISQGQP
RefSeq:XP_001076353.1 RefSeq:XP_233702.4 UniGene:Rn.162134
Ensembl:ENSRNOT00000013535 GeneID:313744 KEGG:rno:313744
NextBio:666739 Uniprot:G3V7B0
Length = 714
Score = 142 (55.0 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 45/153 (29%), Positives = 78/153 (50%)
Query: 111 PITMIVGPQDVGKSTLCHILLNYAVR-MPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER 169
P+ ++ G D+GKST IL+N+ + +PG++ +++ D+GQ + PG I L I
Sbjct: 316 PVILLCGACDIGKSTFSRILINHLLNSIPGVD----YLECDLGQTEFTPPGCISLLNITE 371
Query: 170 PATIEDGFSQLAP--IVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMII 227
P Q P +VY +G N + E Y++ +E + + + +D K +II
Sbjct: 372 PLLGPPYTHQRKPQKMVY-FGKT--NCHNE-YENYIE-----IVKYVFRDYKREFP-LII 421
Query: 228 NTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260
NT GW+ GDG L+ + L + ++ L +R
Sbjct: 422 NTMGWVSGDGLLLLVDLIRVLSPNYVVQLTSDR 454
>CGD|CAL0001772 [details] [associations]
symbol:orf19.721 species:5476 "Candida albicans" [GO:0030874
"nucleolar chromatin" evidence=IEA] [GO:0006363 "termination of RNA
polymerase I transcription" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0051731 "polynucleotide
5'-hydroxyl-kinase activity" evidence=IEA] CGD:CAL0001772
GO:GO:0005524 GO:GO:0005730 EMBL:AACQ01000135 EMBL:AACQ01000134
GO:GO:0006364 eggNOG:COG1341 GO:GO:0051731 RefSeq:XP_713081.1
RefSeq:XP_713104.1 ProteinModelPortal:Q59U11 GeneID:3645242
GeneID:3645279 KEGG:cal:CaO19.721 KEGG:cal:CaO19.8340
Uniprot:Q59U11
Length = 686
Score = 136 (52.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 54/212 (25%), Positives = 95/212 (44%)
Query: 75 KNMTY--VSKETPMNYYMNVHI--ILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHIL 130
KN ++ + ET Y ++++ I E ++ + I MI+G ++ GKST C L
Sbjct: 219 KNYSFDIILTETNGGYGLDINSYWINELNLLKSNKDDPTPKIIMIIGNKNTGKSTFCKSL 278
Query: 131 LNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP-----ATIEDGFSQLAPIVY 185
+N + + NR ++++D GQ S P + I + A + + V
Sbjct: 279 INELL-LTNPNRPVSYLEIDPGQSEYSTPYALSLSEIVQAQFGLVALPHKNNNIVKSRVE 337
Query: 186 NYGHLTPNANLEL-YQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMAC 244
+Y T N Y +E L+ + K S+ N +IINT GW+KG G + L
Sbjct: 338 HYFGFTSAVNAPTRYVEIIEELF---NHHQTKFSQRNH--LIINTPGWVKGYGKELLNQI 392
Query: 245 AKSLRVDNILVLDQERLYNELIRELPKSYDVV 276
K + D +++L N L +E P + +++
Sbjct: 393 TKIINPDKLILLS-----NNLNQEYPDNANIL 419
>UNIPROTKB|Q59U11 [details] [associations]
symbol:GRC3 "Polynucleotide 5'-hydroxyl-kinase GRC3"
species:237561 "Candida albicans SC5314" [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0051731 "polynucleotide
5'-hydroxyl-kinase activity" evidence=ISS] CGD:CAL0001772
GO:GO:0005524 GO:GO:0005730 EMBL:AACQ01000135 EMBL:AACQ01000134
GO:GO:0006364 eggNOG:COG1341 GO:GO:0051731 RefSeq:XP_713081.1
RefSeq:XP_713104.1 ProteinModelPortal:Q59U11 GeneID:3645242
GeneID:3645279 KEGG:cal:CaO19.721 KEGG:cal:CaO19.8340
Uniprot:Q59U11
Length = 686
Score = 136 (52.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 54/212 (25%), Positives = 95/212 (44%)
Query: 75 KNMTY--VSKETPMNYYMNVHI--ILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHIL 130
KN ++ + ET Y ++++ I E ++ + I MI+G ++ GKST C L
Sbjct: 219 KNYSFDIILTETNGGYGLDINSYWINELNLLKSNKDDPTPKIIMIIGNKNTGKSTFCKSL 278
Query: 131 LNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP-----ATIEDGFSQLAPIVY 185
+N + + NR ++++D GQ S P + I + A + + V
Sbjct: 279 INELL-LTNPNRPVSYLEIDPGQSEYSTPYALSLSEIVQAQFGLVALPHKNNNIVKSRVE 337
Query: 186 NYGHLTPNANLEL-YQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMAC 244
+Y T N Y +E L+ + K S+ N +IINT GW+KG G + L
Sbjct: 338 HYFGFTSAVNAPTRYVEIIEELF---NHHQTKFSQRNH--LIINTPGWVKGYGKELLNQI 392
Query: 245 AKSLRVDNILVLDQERLYNELIRELPKSYDVV 276
K + D +++L N L +E P + +++
Sbjct: 393 TKIINPDKLILLS-----NNLNQEYPDNANIL 419
>UNIPROTKB|E1BPN0 [details] [associations]
symbol:NOL9 "Polynucleotide 5'-hydroxyl-kinase NOL9"
species:9913 "Bos taurus" [GO:0000460 "maturation of 5.8S rRNA"
evidence=ISS] [GO:0051731 "polynucleotide 5'-hydroxyl-kinase
activity" evidence=ISS] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
GO:GO:0000460 InterPro:IPR010655 Pfam:PF06807 GO:GO:0051731
EMBL:AAFC03030715 IPI:IPI00714831 RefSeq:NP_001193528.1
UniGene:Bt.103226 Ensembl:ENSBTAT00000022240 GeneID:523474
KEGG:bta:523474 CTD:79707 GeneTree:ENSGT00390000012406 OMA:TISQGQP
NextBio:20873752 Uniprot:E1BPN0
Length = 694
Score = 136 (52.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 44/181 (24%), Positives = 79/181 (43%)
Query: 82 KETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLN 141
K+T + + ++E+ S + +++ P+ ++ G QD+GKST L+N +
Sbjct: 263 KKTGLRLTESAFAVMEELVSISSEEADSCPVILVCGCQDIGKSTFNRYLINQLLNSVSCV 322
Query: 142 RKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAP--IVYNYGHLTPNANLELY 199
+++ D+GQ + PG I L I P Q P +VY YG + N E Y
Sbjct: 323 D---YLECDLGQTEFTPPGCISLLNITEPVLGPPFTHQRTPQKMVY-YGKTSCKNNFENY 378
Query: 200 QHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE 259
++ ++ S S +IINT GW+ G L+ + L +++ +
Sbjct: 379 IEVIKYVFSSYKRE---------SPLIINTMGWVADQGLLLLIDLIRLLSPSHVVQFSSD 429
Query: 260 R 260
R
Sbjct: 430 R 430
>UNIPROTKB|Q5SY16 [details] [associations]
symbol:NOL9 "Polynucleotide 5'-hydroxyl-kinase NOL9"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=TAS] [GO:0000460 "maturation of
5.8S rRNA" evidence=IMP] [GO:0051731 "polynucleotide
5'-hydroxyl-kinase activity" evidence=IDA] [GO:0005730 "nucleolus"
evidence=TAS] GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
GO:GO:0000460 InterPro:IPR010655 Pfam:PF06807 eggNOG:COG1341
GO:GO:0051731 EMBL:AL591866 CTD:79707 OMA:TISQGQP EMBL:AK026976
EMBL:AK289653 EMBL:BC009257 EMBL:BC012439 EMBL:BC063639
EMBL:BC094836 EMBL:BC105095 EMBL:BC110849 EMBL:BC112278
IPI:IPI00002902 RefSeq:NP_078930.3 UniGene:Hs.59425
ProteinModelPortal:Q5SY16 SMR:Q5SY16 STRING:Q5SY16
PhosphoSite:Q5SY16 DMDM:73921242 SWISS-2DPAGE:Q5SY16 PaxDb:Q5SY16
PeptideAtlas:Q5SY16 PRIDE:Q5SY16 DNASU:79707
Ensembl:ENST00000377705 GeneID:79707 KEGG:hsa:79707 UCSC:uc001ans.3
GeneCards:GC01M006581 HGNC:HGNC:26265 neXtProt:NX_Q5SY16
PharmGKB:PA142671256 HOGENOM:HOG000113821 HOVERGEN:HBG058105
InParanoid:Q5SY16 OrthoDB:EOG45HRWZ PhylomeDB:Q5SY16 ChiTaRS:NOL9
GenomeRNAi:79707 NextBio:69023 Bgee:Q5SY16 CleanEx:HS_NOL9
Genevestigator:Q5SY16 GermOnline:ENSG00000162408 Uniprot:Q5SY16
Length = 702
Score = 132 (51.5 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 52/191 (27%), Positives = 91/191 (47%)
Query: 111 PITMIVGPQDVGKSTLCHILLNYAVR-MPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER 169
P+ ++ G QDVGKST L+N+ + +P ++ +++ D+GQ + PG I L I
Sbjct: 300 PVILVCGSQDVGKSTFNRYLINHLLNSLPCVD----YLECDLGQTEFTPPGCISLLNITE 355
Query: 170 PATIEDGFSQL-AP--IVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMI 226
P + F+ L P +VY YG + N E Y V+ ++ S +R S +I
Sbjct: 356 PV-LGPPFTHLRTPQKMVY-YGKPSCKNNYENYIDIVKYVF-SAYKR--------ESPLI 404
Query: 227 INTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNELIRELPKSY--DVVLLPKSGGV 284
+NT GW+ G L+ + L +++ + +++ + +L Y D+ L
Sbjct: 405 VNTMGWVSDQGLLLLIDLIRLLSPSHVVQFRSD--HSKYMPDLTPQYVDDMDGLYTKSKT 462
Query: 285 VDRSRQFRAEA 295
R+R+FR A
Sbjct: 463 KMRNRRFRLAA 473
>UNIPROTKB|I3LBV6 [details] [associations]
symbol:NOL9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051731 "polynucleotide 5'-hydroxyl-kinase activity"
evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA" evidence=IEA]
GO:GO:0000460 InterPro:IPR010655 Pfam:PF06807 GO:GO:0051731
CTD:79707 GeneTree:ENSGT00390000012406 OMA:TISQGQP EMBL:FP236215
RefSeq:XP_003127589.2 Ensembl:ENSSSCT00000027328 GeneID:100518312
KEGG:ssc:100518312 Uniprot:I3LBV6
Length = 694
Score = 131 (51.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 43/182 (23%), Positives = 81/182 (44%)
Query: 82 KETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVR-MPGL 140
K+T + + ++E+ S + ++ P+ ++ G QDVGKST L+N + +P +
Sbjct: 263 KKTGLRLTESAFSVMEELVSVSCEEVDGCPVILVCGSQDVGKSTFIRYLMNQLLNSIPCI 322
Query: 141 NRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAP--IVYNYGHLTPNANLEL 198
+ +++ D+GQ + PG + L I P Q P +VY YG + N E
Sbjct: 323 D----YLECDLGQTEFTPPGCVSLLNITEPVLGPPFTHQRTPQKMVY-YGKTSCKDNFEN 377
Query: 199 YQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQ 258
Y ++ ++ S + +I+NT GW+ G L+ + L +++
Sbjct: 378 YIEIIKYVFSSYKRE---------APLIVNTMGWVADKGLLLLVDLIRLLSPSHVVQFSS 428
Query: 259 ER 260
R
Sbjct: 429 SR 430
>MGI|MGI:1921285 [details] [associations]
symbol:Nol9 "nucleolar protein 9" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=ISO] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0016301 "kinase activity" evidence=IEA] [GO:0016310
"phosphorylation" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0051731 "polynucleotide 5'-hydroxyl-kinase
activity" evidence=ISO] MGI:MGI:1921285 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:CH466594 GO:GO:0000460 InterPro:IPR010655
Pfam:PF06807 eggNOG:COG1341 GO:GO:0051731 EMBL:AL611927 CTD:79707
GeneTree:ENSGT00390000012406 OMA:TISQGQP HOVERGEN:HBG058105
EMBL:AK014568 EMBL:AK042581 EMBL:AK046761 EMBL:AK050948
EMBL:AK157398 EMBL:BC024877 EMBL:BC125432 EMBL:BC132099
IPI:IPI00625464 IPI:IPI00649815 IPI:IPI00874324
RefSeq:NP_001153071.1 RefSeq:NP_083003.2 UniGene:Mm.275803
ProteinModelPortal:Q3TZX8 SMR:Q3TZX8 STRING:Q3TZX8
PhosphoSite:Q3TZX8 PaxDb:Q3TZX8 PRIDE:Q3TZX8
Ensembl:ENSMUST00000084116 Ensembl:ENSMUST00000103197
Ensembl:ENSMUST00000105663 GeneID:74035 KEGG:mmu:74035
UCSC:uc008vzc.2 UCSC:uc008vzd.2 UCSC:uc008vzf.2 InParanoid:Q3TZX8
NextBio:339594 Bgee:Q3TZX8 Genevestigator:Q3TZX8 Uniprot:Q3TZX8
Length = 714
Score = 130 (50.8 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 42/153 (27%), Positives = 74/153 (48%)
Query: 111 PITMIVGPQDVGKSTLCHILLNYAVR-MPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER 169
P+ ++ G D+GKST IL+N + +PG++ +++ D+GQ + PG + L I
Sbjct: 316 PVILLCGACDIGKSTFNRILINQLLNSIPGVD----YLECDLGQTEFTPPGCVALLTITE 371
Query: 170 PATIEDGFSQLAP--IVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMII 227
P Q P +VY YG + + E Y V+ +++ D K +II
Sbjct: 372 PLLGPPYTHQRKPQRMVY-YGKMNCYNDYENYIDIVKYVFR--------DYKREFP-LII 421
Query: 228 NTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260
NT GW+ +G + L+ + L + ++ L +R
Sbjct: 422 NTMGWVSDNGLRLLVDLIRVLSPNYVVQLYSDR 454
>TAIR|locus:2183830 [details] [associations]
symbol:AT5G11010 species:3702 "Arabidopsis thaliana"
[GO:0005525 "GTP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006777 "Mo-molybdopterin cofactor biosynthetic
process" evidence=IEA] GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005730 GO:GO:0006364 EMBL:AL365234
InterPro:IPR010655 Pfam:PF06807 eggNOG:COG1341 GO:GO:0051731
EMBL:AY070379 EMBL:AY096562 EMBL:AF412075 IPI:IPI00524172
IPI:IPI00531789 PIR:T50810 RefSeq:NP_568243.1 RefSeq:NP_850805.1
RefSeq:NP_974765.1 UniGene:At.26406 UniGene:At.65836
ProteinModelPortal:Q8VYP6 SMR:Q8VYP6 PaxDb:Q8VYP6 PRIDE:Q8VYP6
EnsemblPlants:AT5G11010.2 EnsemblPlants:AT5G11010.3 GeneID:830968
KEGG:ath:AT5G11010 TAIR:At5g11010 HOGENOM:HOG000237585
InParanoid:Q8VYP6 OMA:TPERCFF PhylomeDB:Q8VYP6
ProtClustDB:CLSN2689597 Genevestigator:Q8VYP6 Uniprot:Q8VYP6
Length = 368
Score = 124 (48.7 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 36/160 (22%), Positives = 79/160 (49%)
Query: 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPA 171
I ++ GP++ GKST L+ ++ ++ ++D DVGQ + PG + ++++ +
Sbjct: 31 IALVCGPKNSGKSTFSRNLVEVLLQR---YKRVAYLDTDVGQPEFTAPGFLSLTIVDK-S 86
Query: 172 TIEDGFSQLAPIV------YNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSS-G 224
+E ++ P V + YG ++ + + Y V L+ K S+ +
Sbjct: 87 ILESDWT--VPCVKTPERCFFYGDVSSKRDPKAYLRYVYTLFDYYQLHFCKSSENKTELP 144
Query: 225 MIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNE 264
++INT GW+KG G++ L+ + + +++ ++ YN+
Sbjct: 145 LVINTPGWVKGIGYELLVDVLRYVSPSHVVKINISA-YNK 183
>UNIPROTKB|Q6BQV7 [details] [associations]
symbol:GRC3 "Polynucleotide 5'-hydroxyl-kinase GRC3"
species:284592 "Debaryomyces hansenii CBS767" [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0051731 "polynucleotide
5'-hydroxyl-kinase activity" evidence=ISS] GO:GO:0005524
GO:GO:0005730 GO:GO:0006364 EMBL:CR382137 GenomeReviews:CR382137_GR
eggNOG:COG1341 OrthoDB:EOG4ZPJ45 GO:GO:0051731 OMA:MIIGNKN
RefSeq:XP_459413.2 GeneID:2902894 KEGG:dha:DEHA2E01892g
HOGENOM:HOG000248705 Uniprot:Q6BQV7
Length = 680
Score = 126 (49.4 bits), Expect = 0.00014, P = 0.00014
Identities = 39/147 (26%), Positives = 67/147 (45%)
Query: 114 MIVGPQDVGKSTLCHILLNYAVRMPGLNRKPI-FVDLDVGQGHVSVPGTIGALVIERPA- 171
MI+G ++ GKSTL LLN + N+ + ++DLD GQ S+P + +P
Sbjct: 265 MIIGNKNSGKSTLSKTLLNSLILA---NQNTVSYLDLDPGQSEFSMPYCLSLTNHSKPII 321
Query: 172 --TIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINT 229
+ + + YG TP + Y ++ L++ D+ + +IINT
Sbjct: 322 GMNVPKVSGDEDSVSHYYGFTTPQSQPSQYVSIIKALFREYDQVY----RPRGHHLIINT 377
Query: 230 CGWIKGDGFKCLMACAKSLRVDNILVL 256
GWIKG G + L + + +++L
Sbjct: 378 PGWIKGYGKELLNELTAFINPNQLILL 404
>POMBASE|SPCC830.03 [details] [associations]
symbol:grc3 "polynucleotide kinase Grc3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000448 "cleavage in
ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006363 "termination of
RNA polymerase I transcription" evidence=ISO] [GO:0006364 "rRNA
processing" evidence=ISO;ISS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0030702 "chromatin silencing at centromere"
evidence=IMP] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0031618 "nuclear centromeric heterochromatin"
evidence=IDA] [GO:0051731 "polynucleotide 5'-hydroxyl-kinase
activity" evidence=ISO;ISS] [GO:0097356 "perinucleolar compartment"
evidence=IDA] PomBase:SPCC830.03 GO:GO:0005524 GO:GO:0005730
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0016887 GO:GO:0030702
GO:GO:0031618 GO:GO:0000448 GO:GO:0006363 GO:GO:0031508
InterPro:IPR010655 Pfam:PF06807 eggNOG:COG1341 KO:K06947
GO:GO:0051731 OrthoDB:EOG4NW2TR OMA:IAFRENE EMBL:AB027930
PIR:T41629 RefSeq:NP_588473.1 EnsemblFungi:SPCC830.03.1
GeneID:2539329 KEGG:spo:SPCC830.03 NextBio:20800494 GO:GO:0097356
Uniprot:Q9UU96
Length = 736
Score = 121 (47.7 bits), Expect = 0.00053, P = 0.00053
Identities = 42/154 (27%), Positives = 68/154 (44%)
Query: 111 PITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP 170
P M+ GP+ GKS+ + N R+ R ++DLD GQ V G I I P
Sbjct: 332 PRLMVCGPKGSGKSSFSRYITN---RLLQQYRHIAYLDLDPGQPEVVPSGHISLYYINSP 388
Query: 171 ATIEDGFSQLAP---IVYNYGHLTPNANLELYQHCVERLWKSV-DERMNKD-SKTNSSGM 225
L P + + G ++P + + Y CV RL+ D N++ S+ +
Sbjct: 389 LQGPVFARMLFPTYMLRLHLGDISPQKDPDHYIACVTRLFAEYKDYIFNQEISQKEIIPL 448
Query: 226 IINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE 259
IIN GWI+G G + L + + ++ + +E
Sbjct: 449 IINCPGWIRGGGAELLSSIVDICQPTEVVYMSRE 482
>SGD|S000003958 [details] [associations]
symbol:GRC3 "Polynucleotide kinase present on rDNA"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA;IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016301 "kinase activity" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IPI] [GO:0016740
"transferase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0051731 "polynucleotide 5'-hydroxyl-kinase
activity" evidence=IDA] [GO:0006363 "termination of RNA polymerase
I transcription" evidence=IMP] [GO:0016310 "phosphorylation"
evidence=IEA] SGD:S000003958 GO:GO:0005524 EMBL:BK006945
GO:GO:0006364 GO:GO:0006363 GO:GO:0030874 InterPro:IPR010655
Pfam:PF06807 eggNOG:COG1341 HOGENOM:HOG000112809 KO:K06947
OrthoDB:EOG4ZPJ45 GO:GO:0051731 OMA:MIIGNKN EMBL:Z73140 EMBL:X81985
PIR:S64786 RefSeq:NP_013065.1 ProteinModelPortal:Q07845 SMR:Q07845
STRING:Q07845 EnsemblFungi:YLL035W GeneID:850624 KEGG:sce:YLL035W
CYGD:YLL035w NextBio:966529 Genevestigator:Q07845
GermOnline:YLL035W Uniprot:Q07845
Length = 632
Score = 119 (46.9 bits), Expect = 0.00071, P = 0.00071
Identities = 50/211 (23%), Positives = 98/211 (46%)
Query: 114 MIVGPQDVGKSTLCHILLN---YAVRMPGLNRKP-IFVDLDVGQGHVSVPGTIGA-LVIE 168
M++G ++ GKST +LL +R +++ +++DLD GQ S+P +I ++
Sbjct: 243 MVIGGKNSGKSTFLRLLLEKFTQDIRDSTTSQEELVYLDLDPGQPEYSLPDSISLNKILS 302
Query: 169 RPATIEDGFSQ---LAPIVYNY-GHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSG 224
P ++ Q ++ Y G +P Y +C ++L +D + + + +S
Sbjct: 303 SPISLGQHLCQGSNFQTLLQFYAGSSSPQDEPTSYLNCADKL---IDH-LEEQAFFGTS- 357
Query: 225 MIINTCGWIKGDGFKCLMACAKSLRVDNILVLD---QERLYNELIRELPKSYDVVLLPKS 281
++N GWIKG G + L + + ++L L+ +R +EL +P+S+ L
Sbjct: 358 -LLNLPGWIKGFGMQILNHIIRKYKPTHLLFLETANSKRHLDELT--IPQSFSTSLRDAY 414
Query: 282 GGVVDRSRQFRAEARDKRIKEYFYGSRLKPF 312
V R A + + + F+ S+L+ F
Sbjct: 415 APEVVR---VPAHSLNHTLSSRFHASQLRTF 442
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.411 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 455 441 0.00089 118 3 11 22 0.38 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 45
No. of states in DFA: 608 (65 KB)
Total size of DFA: 271 KB (2144 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 34.95u 0.09s 35.04t Elapsed: 00:00:05
Total cpu time: 34.97u 0.09s 35.06t Elapsed: 00:00:05
Start: Thu Aug 15 11:12:53 2013 End: Thu Aug 15 11:12:58 2013