RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2946
(455 letters)
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 374 bits (962), Expect = e-127
Identities = 107/441 (24%), Positives = 196/441 (44%), Gaps = 40/441 (9%)
Query: 6 PDDQTFELKQDQELRFEVENAQ-IEIEVTSGLAEIFGVELVKSKKYLFPIGAKGAVYTWH 64
+ + + + + +++ + ++V SG+ EIFG EL +Y F K +Y
Sbjct: 36 NEWHKLVIPKGSDWQIDLKAEGKLIVKVNSGIVEIFGTELAVDDEYTFQ-NWKFPIYAVE 94
Query: 65 GCSITM--KNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVG 122
+ + N V M Y N+H +LEK R + GP +IVG G
Sbjct: 95 ETELLWKCPDLTTNTITVKPNHTMKYIYNLHFMLEKIR----MSNFEGPRVVIVGGSQTG 150
Query: 123 KSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIED------- 175
K++L L +YA++ +P++++LD Q +VPG I A I +
Sbjct: 151 KTSLSRTLCSYALKFNA--YQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSL 208
Query: 176 -----GFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTC 230
P+V N+G N N +LY C+ +L + V +R++ D + SG I++T
Sbjct: 209 TSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268
Query: 231 GWIK-GDGFKCLMACAKSLRVDNILVLDQ--ERLYNELIREL---PKSYDVVLLPKSGGV 284
+ + L + L V+ +LVL + L+ ++ + + ++ +PK GV
Sbjct: 269 SISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGV 328
Query: 285 VDRSRQFRAEARDKRIKEYFYGSRLKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVT 344
++ + I+EYFYGS +P++ + + ++ I+K P + V
Sbjct: 329 SAVDDVYKRSLQRTSIREYFYGSLDTALSPYAIGVDYEDLTIWK------PSNVFDNEVG 382
Query: 345 ATEFLTKVVLVQPGPSLLHHLLALSFATTES---EILEQNIVGFVCVTHVDMLRQSLSVL 401
E V + P +L H ++A++FA + +++ I+GF +T V+ R+ L VL
Sbjct: 383 RVE--LFPVTITP-SNLQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVL 439
Query: 402 CLQARPLPCSKLILTDIQYMD 422
LP +ILT +Y++
Sbjct: 440 LPVPGRLPSKAMILTSYRYLE 460
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.3 bits (140), Expect = 3e-09
Identities = 68/509 (13%), Positives = 131/509 (25%), Gaps = 183/509 (35%)
Query: 7 DDQTFE------LKQDQELRFEVENAQIEIEVT------SG---LAEIFGVELVKSKKYL 51
D+Q F L+ +LR + + V SG +A +++ S K
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA----LDVCLSYKVQ 177
Query: 52 --FPIGAKGAVYTWHGCSITMKNARK---------NMTYVSK-------ETPMNYYMNVH 93
++ W + +KN + Y + N + +H
Sbjct: 178 CKMD----FKIF-W----LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 94 IILEKQRSEAEQQSKRGPITMIVGPQDV-GKSTL------CHILL---NYAV--RMPGLN 141
I + +SK ++V +V C ILL V +
Sbjct: 229 SI--QAELRRLLKSKPYENCLLV-LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 142 RKPIFV-------------------------DL--DVGQGHVSVPGTIGALVIERPATIE 174
I + DL +V + I + + AT +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 175 ----DGFSQLAPIVYN-YGHLTPNANLELYQHCV-------------ERLWKSVDERMNK 216
+L I+ + L P +++ +W
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW--------F 397
Query: 217 DSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQE----RLYNELIRELPKS 272
D + +++N SL + + + + + K
Sbjct: 398 DVIKSDVMVVVNKL-------------HKYSL-----VEKQPKESTISIPSIYLELKVKL 439
Query: 273 YDVVLLPKSGGVVDRSRQFRAEARDKRIKE----YFY------------GSRLKPFNPHS 316
+ L +S +VD + D I YFY R+ F
Sbjct: 440 ENEYALHRS--IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 317 FDIKFGEVQIYKIGAPVLPDSCMPLGVTAT--------EFLTK-------VV------LV 355
D +F E +I + T ++ +V L
Sbjct: 498 LDFRFLEQKIRHDSTA----WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 356 QPGPSLLHH----LLALSFATTESEILEQ 380
+ +L+ LL ++ + I E+
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEE 582
Score = 52.2 bits (124), Expect = 2e-07
Identities = 65/432 (15%), Positives = 121/432 (28%), Gaps = 156/432 (36%)
Query: 22 EVENAQIEIEVTSGLAEIFGVELVKSKK--YLFPIGAKGAVYTWHGCSITMKNARKNMTY 79
E+++ + + SG +F L K ++ F Y + I + + +M
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 80 VSKETPMNYYMNVHIILEK---QRSE-------AEQQSKRGPITMIVGPQDVGKSTL-CH 128
+ N + + K R + A + + +I G GK+ +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 129 ILLNYAV--RMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYN 186
+ L+Y V +M IF L++ +
Sbjct: 170 VCLSYKVQCKMDF----KIFW-LNLKNCN------------------------------- 193
Query: 187 YGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWIKGDGFKCLMAC-- 244
+P LE+ Q +L +D N S+++ S I I+ + L+
Sbjct: 194 ----SPETVLEMLQ----KLLYQIDP--NWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKP 242
Query: 245 -AKSLRVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVVDRSRQFRAEARDKRIKEY 303
L LVL +V ++ +
Sbjct: 243 YENCL-----LVLL----------------NV--------------------QNAKA--- 258
Query: 304 FYGSRLKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVT-----ATEFLTKVVLVQPG 358
FN + +L +T T+FL+
Sbjct: 259 -----WNAFN---------------LSCKIL--------LTTRFKQVTDFLSAATTTH-- 288
Query: 359 PSLLHHLLALSFATTESEILEQNIVGFVCVTHVDMLRQSLSVLCLQARPLPCSKLILTDI 418
SL HH + L T E+ + + ++D Q L L P S +I I
Sbjct: 289 ISLDHHSMTL----TPDEVKS------LLLKYLDCRPQDLPREVLTTNPRRLS-IIAESI 337
Query: 419 Q-YMDRLHQWVY 429
+ + W +
Sbjct: 338 RDGLATWDNWKH 349
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 5e-04
Identities = 61/339 (17%), Positives = 108/339 (31%), Gaps = 121/339 (35%)
Query: 162 IGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTN 221
I AL + + + ++ NY A + L+++V E +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ----- 155
Query: 222 SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILV-LD--QE--RLYNELIRELPKSYDVV 276
++ G G G N + ++ + Y+ L+ +L K
Sbjct: 156 ----LVAIFG---GQG--------------NTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 277 LLPKSGGVVDRSRQFRAEARDKRIKEYFYGSRLKPFNPHSFDI-KFGEV------QIYKI 329
L +D + F +I ++ E + Y +
Sbjct: 195 LSELIRTTLDAEKVF----------------------TQGLNILEWLENPSNTPDKDYLL 232
Query: 330 GAPVLPDSCMPL-GVTA-TEFLT--KVVLVQPGPSLLHHLLALSFATTESEILEQNIVGF 385
P+ SC PL GV ++ K++ PG L +L AT S Q +V
Sbjct: 233 SIPI---SC-PLIGVIQLAHYVVTAKLLGFTPG-ELRSYLKG---ATGHS----QGLVTA 280
Query: 386 VCVTHVD-------MLRQSLSVL------CLQARP---LPCSKLILTDIQ--------YM 421
V + D +R++++VL C +A P LP S IL D M
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS--ILEDSLENNEGVPSPM 338
Query: 422 DRLHQWVYSVPAGLSR-----------SYGPPTGKISCS 449
L S+ + L++ S+ P ++ S
Sbjct: 339 --L-----SI-SNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Score = 38.1 bits (88), Expect = 0.007
Identities = 28/158 (17%), Positives = 47/158 (29%), Gaps = 60/158 (37%)
Query: 293 AEARD--KRIKEYF---YGSRLKPF---NPHSFDIKFGEVQIYKIGA------------- 331
A+D R +F YG + NP + I FG + +I
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 332 -----PVLPD------SCM---PLGV-TATEFLTKVVLVQPGPSLLHHLLALSFATTESE 376
+ + S G+ +AT+F T QP L + A E +
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSATQF-T-----QPA------LTLMEKAAFE-D 1746
Query: 377 ILEQNIVGFVCVT--HVDMLRQSL---SVLCLQARPLP 409
+ + ++ H SL + L A +
Sbjct: 1747 LKSKGLIPADATFAGH------SLGEYAALASLADVMS 1778
Score = 36.6 bits (84), Expect = 0.018
Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 39/157 (24%)
Query: 303 YFYGSRLKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTATEFLTKVV-LVQPGP-S 360
+F S+L+ F+ E A P + L +FL V LV+P
Sbjct: 27 FFIASQLQ----EQFNKILPEPTE-GFAADDEPTTPAEL---VGKFLGYVSSLVEPSKVG 78
Query: 361 LLHHLLALSFATTESEILEQNIVGFVCVTHVDMLRQSL--SVLCLQARPLPCSKLILTDI 418
+L L E+ LE N + H +L +L L +K ++
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDI------H------ALAAKLLQENDTTLVKTKELIK-- 124
Query: 419 QYMDRLHQWVYSVPAGLSRSYGPPTGKISCSSSLFLA 455
Y + R + + +S+LF A
Sbjct: 125 NY--------ITARIMAKRPFDKKS-----NSALFRA 148
Score = 34.3 bits (78), Expect = 0.098
Identities = 40/227 (17%), Positives = 76/227 (33%), Gaps = 73/227 (32%)
Query: 38 EIFGVELVKSKKYLFPIGAKGAVYTWHGC--------SITMKNARKNMTYVSKETPMNYY 89
E F V + K+ LF IG + + SI + N +PM
Sbjct: 290 ESFFVSVRKAITVLFFIGVRC-----YEAYPNTSLPPSILEDSLENNEG---VPSPM--- 338
Query: 90 MNVHIILEKQ-RSEAEQQSKRGP------ITMIVGPQDV---G--KS--TLCHILLNYAV 135
+++ + ++Q + + + P I+++ G +++ G +S L L
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 136 -------RMPGLNRKPIFVD--LDVGQGHVSVP------GTIGALVIERPATIEDGF--S 178
R+P RK F + L V+ P L+ + F
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLP-----VASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 179 QLA-PIVYNYGHLTPN-ANL-ELYQHCVERL----------WKSVDE 212
+ P VY+ T + ++L L ER+ W++ +
Sbjct: 454 DIQIP-VYD----TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ 495
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 37.4 bits (86), Expect = 0.007
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 101 SEAEQQSKRGPITMIV-GPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVP 159
S + ++ G GK+TL Y N K +V+LD G +
Sbjct: 4 SHHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLE----DNYKVAYVNLDTGVKELPYE 59
Query: 160 GTI 162
+I
Sbjct: 60 PSI 62
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 36.9 bits (84), Expect = 0.009
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 95 ILEKQRSEAEQQSKRGP-ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150
L+K E + + P GPQ GKS + N+ + G + + +D
Sbjct: 15 FLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASID 71
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.023
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 28/53 (52%)
Query: 297 DKR-IK--EYFYGSRLKPFNPHSFDIKFGEVQIYKIGAPVLPDSCMPLGVTAT 346
+K+ +K + + LK + S AP L + AT
Sbjct: 18 EKQALKKLQ----ASLKLYADDS--------------APA-------LAIKAT 45
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric
ring, heptamer, ring, oligomer, RAD51 polymerizat motif;
HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1
c.37.1.11
Length = 349
Score = 35.0 bits (80), Expect = 0.047
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 18/100 (18%)
Query: 66 CSITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQS--------------KRGP 111
I+ A K + K + +M L+ +R+ + S +
Sbjct: 74 AGISEGTALKIIQAARKAANLGTFMRADEYLK-KRATIGRISTGSKSLDKLLGGGIETQA 132
Query: 112 ITMIVGPQDVGKSTLCHILLNYA---VRMPGLNRKPIFVD 148
IT + G GK+ L H L GLN I++D
Sbjct: 133 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 172
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 32.5 bits (75), Expect = 0.17
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 97 EKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLN-------RKP 144
+ + + Q + G + ++ GP VGKST+ L R+P L+ R P
Sbjct: 7 DTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRE---RIPNLHFSVSATTRAP 58
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA
binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A
{Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A*
2zuc_A* 2zud_A*
Length = 324
Score = 32.0 bits (73), Expect = 0.34
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 109 RGPITMIVGPQDVGKSTLCHIL---LNYAVRMPGLNRKPIFVD 148
+T G GK+ LCH L + GL+ K +++D
Sbjct: 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 31.0 bits (71), Expect = 0.67
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 30/96 (31%)
Query: 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTL 126
+ M+N + TP+ +N I +RG + + G GK++L
Sbjct: 6 EVVMENV--TAFWEEGGTPVLKDINFKI-------------ERGQLLAVAGSTGAGKTSL 50
Query: 127 CHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTI 162
+++ +L+ +G + G I
Sbjct: 51 LMMIMG---------------ELEPSEGKIKHSGRI 71
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 31.0 bits (71), Expect = 0.71
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 30/96 (31%)
Query: 67 SITMKNARKNMTYVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTL 126
SIT++NA T+ + P + I G + +VG GKS+L
Sbjct: 3 SITVRNA--TFTWARSDPPTLNGITFSI-------------PEGALVAVVGQVGCGKSSL 47
Query: 127 CHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTI 162
LL ++D +GHV++ G++
Sbjct: 48 LSALLA---------------EMDKVEGHVAIKGSV 68
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 30.7 bits (69), Expect = 0.97
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 10/71 (14%)
Query: 102 EAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAV----------RMPGLNRKPIFVDLDV 151
+A + + G +VG +VGKST + ++ PG I + LD
Sbjct: 152 DAIEYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE 211
Query: 152 GQGHVSVPGTI 162
PG I
Sbjct: 212 ESSLYDTPGII 222
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 30.2 bits (69), Expect = 1.0
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 107 SKRGPITMIVGPQDVGKSTLCHILL 131
++RG + ++ GP VGK T+ +
Sbjct: 5 TERGLLIVLSGPSGVGKGTVREAVF 29
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 29.8 bits (68), Expect = 1.2
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 107 SKRGPITMIVGPQDVGKSTLCHILL 131
+++G + ++ GP VGK T+ +
Sbjct: 3 NEKGLLIVLSGPSGVGKGTVRKRIF 27
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 30.4 bits (69), Expect = 1.2
Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 20/72 (27%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVI 167
+RG + + G GK++L +++ +L+ +G + G I +
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMG---------------ELEPSEGKIKHSGRI-SFCS 105
Query: 168 ERP----ATIED 175
+ TI++
Sbjct: 106 QNSWIMPGTIKE 117
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding
protein, ring protein, octamer, AAA ATPase; 3.20A {Homo
sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Length = 343
Score = 30.2 bits (68), Expect = 1.2
Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 14/81 (17%)
Query: 109 RGPITMIVGPQDVGKSTLCHILLNYA---VRMPGLNRKPIFVD----------LDVGQG- 154
IT G GK+ L H L A K IF+D D+
Sbjct: 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180
Query: 155 HVSVPGTIGALVIERPATIED 175
+V + ++ R T E
Sbjct: 181 NVDHDAVLDNVLYARAYTSEH 201
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 30.1 bits (67), Expect = 1.5
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHV 156
G + +V P GKS L L A ++ + ++ G V
Sbjct: 29 AGTVGALVSPGGAGKSML---ALQLAAQI--AGGPDLLEVGELPTGPV 71
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 29.8 bits (68), Expect = 1.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 108 KRGPITMIVGPQDVGKSTLCHIL 130
K+G I+G GKSTL +IL
Sbjct: 28 KKGEFVSIIGASGSGKSTLLYIL 50
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET:
GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Length = 447
Score = 30.0 bits (66), Expect = 1.7
Identities = 29/221 (13%), Positives = 49/221 (22%), Gaps = 30/221 (13%)
Query: 115 IVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ--GHVSVPGTIGALVIERPAT 172
+ G GKS L +L Y ++ + + G S T G +
Sbjct: 72 VAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFL 131
Query: 173 IEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGW 232
I P L + R + S SS + N
Sbjct: 132 IN------KPDGKKVAVLLMDTQGTFDSQSTLRD----SATVFALSTMISSIQVYNLSQN 181
Query: 233 IKG---DGFKCLMACAKSLRVDN---------ILVLD-QERLYNELIRELPKSYDVVLLP 279
++ + + + LV D + + L
Sbjct: 182 VQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLK 241
Query: 280 KSGGVVDRSRQFRAEARDKRIKEYFYGSRLKPFNPHSFDIK 320
SG + + R K I F +
Sbjct: 242 VSGNQHEELQNVR-----KHIHSCFTNISCFLLPHPGLKVA 277
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 30.2 bits (67), Expect = 1.8
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 7/87 (8%)
Query: 40 FGVELVKSKKYLFPIGAKGAVYTWHGCSITMKNARKNMTYVSKETPMNYYMNVHIILEKQ 99
+GV ++KY H + VS E+ + M L +
Sbjct: 98 WGVVETHARKYHV-------ALLEHDEFGIITCDNWRRVAVSSESVVYSDMAKLRTLRRL 150
Query: 100 RSEAEQQSKRGPITMIVGPQDVGKSTL 126
+ E + ++ G GK+
Sbjct: 151 LKDGEPHVSSAKVVLVDGVPGCGKTKE 177
>2dbs_A Hypothetical protein TTHC002; extremely thermophili bacteria,
structural genomics, NPPSFA; 2.10A {Thermus
thermophilus} SCOP: d.374.1.1
Length = 90
Score = 27.8 bits (61), Expect = 2.1
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 255 VLDQERLYNELIRELPKSYDVVLLP 279
VL Q L +L+RELP +Y +VLLP
Sbjct: 14 VLMQYLLEADLLRELPPTYRLVLLP 38
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 29.1 bits (66), Expect = 2.1
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 101 SEAEQQSKRGPITMIVGPQDVGKSTLCHILLN 132
E R + +++G VG+S + + LL+
Sbjct: 11 RENLYFQGRKTL-VLIGASGVGRSHIKNALLS 41
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous
recombination, breast cancer susceptibility, RECA-like
ATPase, protein complex; HET: DNA MSE; 1.70A {Homo
sapiens} SCOP: c.37.1.11
Length = 243
Score = 29.4 bits (66), Expect = 2.3
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 17/102 (16%)
Query: 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMP----GLNRKPIFVDLDVGQGHVSVPGTIGA 164
G IT + G GK+ +CH L ++P G K +++D T G
Sbjct: 23 TGSITEMFGEFRTGKTQICHTLA-VTCQLPIDRGGGEGKAMYID------------TEGT 69
Query: 165 LVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERL 206
ER + + + V + N + + +
Sbjct: 70 FRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQA 111
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 28.9 bits (65), Expect = 2.3
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 90 MNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDL 149
M + + + + + + + G GKSTL + L A + V +
Sbjct: 2 MTLAALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPL---AAALSAQGLPAEVVPM 58
Query: 150 D 150
D
Sbjct: 59 D 59
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 28.7 bits (63), Expect = 2.5
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 111 PITMIVGPQDVGKSTLCHILLNYAVR 136
P+ GK+TL L+
Sbjct: 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 29.0 bits (66), Expect = 2.6
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 101 SEAEQQSKRGPITMIVGPQDVGKSTLCHILLN 132
R P ++ GP VGK TL +L+
Sbjct: 3 HHHHHHMARIPPLVVCGPSGVGKGTLIKKVLS 34
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups,
carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Length = 321
Score = 29.2 bits (65), Expect = 3.1
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 86 MNYYMNVHIILEKQRSEAEQQSKRGP--ITMIVGPQDVGKSTLCHILLNYAVRMPGLNR 142
+++Y+ L++ + + + I I G VGKST +L R P
Sbjct: 66 LSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN 124
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 28.9 bits (64), Expect = 3.6
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 97 EKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLN 132
E++ + E+ + P+T+++G + VGKS+L LN
Sbjct: 18 EEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLN 53
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 28.2 bits (64), Expect = 3.6
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 107 SKRGPITMIVGPQDVGKSTLCHILLN 132
S +++G VG+ + + L+
Sbjct: 2 SHMRKTLVLLGAHGVGRRHIKNTLIT 27
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A
{Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Length = 308
Score = 28.7 bits (64), Expect = 3.8
Identities = 25/135 (18%), Positives = 38/135 (28%), Gaps = 41/135 (30%)
Query: 85 PMNYYMNVHIILEKQRSEA------EQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMP 138
P++ +N +I +R + I I G VGKST +L R P
Sbjct: 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP 108
Query: 139 GLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIEDGF----SQLA--PIVYNYGHLTP 192
R +I DGF L ++ G P
Sbjct: 109 EHRR---------------------VELIT-----TDGFLHPNQVLKERGLMKKKGF--P 140
Query: 193 NA-NLELYQHCVERL 206
+ ++ V L
Sbjct: 141 ESYDMHRLVKFVSDL 155
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 28.8 bits (64), Expect = 4.1
Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 18/112 (16%)
Query: 67 SITMKNARKNMTYVSKETPMNYYMNVHII-------LEKQRSEAEQQSKRGPITMIVGPQ 119
S+ + M +++E + ++V ++ + K + + G + +VG
Sbjct: 114 SVKYPKLLRWMRRMAEELGLCP-VDVCLVSAAKGIGMAKVMEAINRYREGGDV-YVVGCT 171
Query: 120 DVGKSTLCHILLNYAV---------RMPGLNRKPIFVDLDVGQGHVSVPGTI 162
+VGKST + ++ A PG I + L+ G PG I
Sbjct: 172 NVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGII 223
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 28.6 bits (63), Expect = 4.3
Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 13/116 (11%)
Query: 114 MIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATI 173
M+VG +GKSTL + L + + + + I
Sbjct: 22 MVVGESGLGKSTLINSLFLTDLYPERVISGA------------AEKIERTVQIEASTVEI 69
Query: 174 EDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKS-VDERMNKDSKTNSSGMIIN 228
E+ +L V + N + + ++ +S N +I N
Sbjct: 70 EERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDN 125
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 28.5 bits (64), Expect = 4.4
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 101 SEAEQQSKRGPITMIVGPQDVGKST 125
++ Q+ ++ G GK+T
Sbjct: 96 ADKWQEPIHSKYIVLFGSTGAGKTT 120
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 28.2 bits (64), Expect = 4.5
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILL 131
++ GP GKSTL L
Sbjct: 2 AGPRPVVLSGPSGAGKSTLLKKLF 25
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 28.2 bits (62), Expect = 4.7
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 106 QSKRGPITMIVGPQDVGKSTLCHIL 130
+ +G +I G GK+++ ++
Sbjct: 6 EQPKGINILITGTPGTGKTSMAEMI 30
>1vra_B Arginine biosynthesis bifunctional protein ARGJ; 10175521, S
genomics, joint center for structural genomics, JCSG;
HET: MSE UNL; 2.00A {Bacillus halodurans}
Length = 215
Score = 28.2 bits (64), Expect = 4.9
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 311 PFNPHSFDIKFGEVQIYKIGAPV 333
N + DI G + K P
Sbjct: 143 EVNQETIDIAIGPIVTLKQSEPT 165
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 28.2 bits (64), Expect = 5.0
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 10/44 (22%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLN-------RKP 144
+ + +I P GK++L L+ + + R
Sbjct: 5 NKANLFIISAPSGAGKTSLVRALVK---ALAEIKISISHTTRPK 45
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 28.5 bits (63), Expect = 5.0
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 114 MIVGPQDVGKSTLCHILLNY 133
+ GP D GK+TL LL
Sbjct: 173 LFKGPIDSGKTTLAAALLEL 192
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 28.3 bits (64), Expect = 5.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILL 131
+G I ++G GKSTL +LL
Sbjct: 29 NKGDILAVLGQNGCGKSTLLDLLL 52
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 28.5 bits (64), Expect = 5.3
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILL------NYAVRMPG--LNRKP--IFVDLDV 151
K G I I+GP +GK+T IL+ +V L+ KP IF + D
Sbjct: 292 KEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDG 345
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 28.3 bits (63), Expect = 5.6
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 97 EKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHIL---LNYAV 135
+ + S M+ GP +GK+T H++ L Y +
Sbjct: 64 NSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI 105
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 28.1 bits (62), Expect = 6.1
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 106 QSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150
+ R PIT+++G + GKS+ ++ + LN I++DL
Sbjct: 26 KGLRAPITLVLGLRRTGKSS----IIKIGIN--ELNLPYIYLDLR 64
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 27.9 bits (63), Expect = 6.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILL 131
+G + ++ P GKS+L LL
Sbjct: 14 AQGTLYIVSAPSGAGKSSLIQALL 37
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 28.1 bits (62), Expect = 6.4
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 16/101 (15%)
Query: 107 SKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV 166
SK+ PI + G G ST+ H K + ++ D
Sbjct: 2 SKKHPIISVTGSSGAGTSTVKHTFDQI---FRREGVKAVSIEGD------------AFHR 46
Query: 167 IERPATIEDGFSQLAPIVYNYGHLTPNAN-LELYQHCVERL 206
R + + A + H + AN L+ +
Sbjct: 47 FNRADMKAELDRRYAAGDATFSHFSYEANELKELERVFREY 87
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A
{Escherichia coli O127}
Length = 236
Score = 28.0 bits (62), Expect = 6.4
Identities = 5/46 (10%), Positives = 10/46 (21%), Gaps = 8/46 (17%)
Query: 152 GQGHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLE 197
G + +PG L + + + L
Sbjct: 4 GMVTIYLPGEQQTLSVGPVENVAQ--------LVTQPQLRDRLWWP 41
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 27.3 bits (60), Expect = 6.6
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 111 PITMIVGPQDVGKSTLCHILLNYAVR 136
+ +VG + GK+TL + AVR
Sbjct: 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 27.5 bits (62), Expect = 6.8
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVD 148
G +T + GP GK+TL + K +VD
Sbjct: 19 PGVLTQVYGPYASGKTTLALQT---GLLSGK---KVAYVD 52
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 28.1 bits (62), Expect = 6.8
Identities = 9/62 (14%), Positives = 17/62 (27%), Gaps = 14/62 (22%)
Query: 101 SEAEQQSKRGPIT-MIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVP 159
S+A ++ + + G GKS+ + L + G V
Sbjct: 59 SDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-------------EEEGAAKTGVV 105
Query: 160 GT 161
Sbjct: 106 EV 107
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 27.9 bits (62), Expect = 6.8
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 109 RGPITMIVGPQDVGKSTLC-HILLNYAVRMPGLNRKPIFVDLD 150
G ++ G GK+T + A +FV L+
Sbjct: 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTLE 68
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase,
ultrahigh resolution, protein transport; 1.10A {Thermus
aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B*
1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B*
2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A
1ffh_A 2ng1_A*
Length = 295
Score = 27.9 bits (63), Expect = 7.3
Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 24/81 (29%)
Query: 101 SEAEQQSKRGP-ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVP 159
EA + + +VG Q GK+T L A+ G R+P+ V D
Sbjct: 88 GEARLPVLKDRNLWFLVGLQGSGKTTTAAKL---ALYYKGKGRRPLLVAADT-------- 136
Query: 160 GTIGALVIERPATIEDGFSQL 180
+RPA E QL
Sbjct: 137 --------QRPAARE----QL 145
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 27.3 bits (60), Expect = 7.4
Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 8/107 (7%)
Query: 114 MIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATI 173
+I G ++GKS L L++ ++ + I + + Q S P ++ I
Sbjct: 20 LITGEANIGKSELSLALIDRGHQLVCDDV--IDLKQENNQLIGSCPSVANGYILITGIGI 77
Query: 174 EDGFSQLAPIVYNYGHLTPNANLELYQHCVERL-WKSVDERMNKDSK 219
D P ++ + + L V+ +D+ +N +
Sbjct: 78 ID-----VPKLFGLDAVVNQHEVHLSISLVKPEKMPLLDDPLNPLYR 119
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 28.1 bits (63), Expect = 7.4
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILL 131
I +++G GK+TL +L
Sbjct: 376 SDSEILVMMGENGTGKTTLIKLLA 399
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 27.4 bits (60), Expect = 8.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 114 MIVGPQDVGKSTLCHILLNYAVRMP 138
M+VG +GKSTL + L + P
Sbjct: 12 MVVGESGLGKSTLINSLFLTDLYSP 36
>3it4_B Arginine biosynthesis bifunctional protein ARGJ beta chain;
ornithine acetyltransferase, structural genomics; 1.70A
{Mycobacterium tuberculosis} PDB: 3it6_B
Length = 205
Score = 27.4 bits (62), Expect = 8.5
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 311 PFNPHSFDIKFGEVQIYKIGAPV 333
+P + F + G
Sbjct: 137 TLDPDRISVSFNGAAVCVHGVGA 159
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.410
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,933,746
Number of extensions: 416312
Number of successful extensions: 1027
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1012
Number of HSP's successfully gapped: 81
Length of query: 455
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 358
Effective length of database: 3,993,456
Effective search space: 1429657248
Effective search space used: 1429657248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)