RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2946
(455 letters)
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 37.1 bits (85), Expect = 0.003
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 95 ILEKQRSEAEQQSKRGP-ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLD 150
L+K E + + P GPQ GKS + N+ + G + + +D
Sbjct: 11 FLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASID 67
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 35.8 bits (81), Expect = 0.005
Identities = 22/143 (15%), Positives = 40/143 (27%), Gaps = 7/143 (4%)
Query: 114 MIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATI 173
+ GP VGK+TL H G+ + + G + + L R
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSS-GVPVDGFYTEEVRQGGR-RIGFDVVTLSGTRGPLS 62
Query: 174 EDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCGWI 233
G E+L V + S +I+ G +
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTSF-----EQLALPVLRNADCSSGPGQRVCVIDEIGKM 117
Query: 234 KGDGFKCLMACAKSLRVDNILVL 256
+ + A ++L ++L
Sbjct: 118 ELFSQLFIQAVRQTLSTPGTIIL 140
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 35.7 bits (81), Expect = 0.006
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVG 152
I + VG GK+TL Y N K +V+LD G
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLED----NYKVAYVNLDTG 38
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 36.1 bits (83), Expect = 0.007
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 16/101 (15%)
Query: 107 SKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALV 166
SK+ PI + G G ST+ H K + ++ D
Sbjct: 1 SKKHPIISVTGSSGAGTSTVKHTFDQ---IFRREGVKAVSIEGD------------AFHR 45
Query: 167 IERPATIEDGFSQLAPIVYNYGHLTPNAN-LELYQHCVERL 206
R + + A + H + AN L+ +
Sbjct: 46 FNRADMKAELDRRYAAGDATFSHFSYEANELKELERVFREY 86
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 35.1 bits (79), Expect = 0.011
Identities = 30/218 (13%), Positives = 53/218 (24%), Gaps = 12/218 (5%)
Query: 109 RGPITMIVGPQDVGKSTLCHILL---NYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGAL 165
IT + G GK+ L H L GLN I++D + + P I +
Sbjct: 35 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE----NTFRPERIREI 90
Query: 166 VIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTN---- 221
R ++ + + + E L ++
Sbjct: 91 AQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 150
Query: 222 SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNELIRELPKSYDVVLLPKS 281
S + + K L + + +I V ++ +
Sbjct: 151 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHIL 210
Query: 282 GGVVDRSRQFRAEARDKRIKEYFYGSRLKPFNPHSFDI 319
R KRI + P F I
Sbjct: 211 AHSATLRVYLRKGKGGKRIA-RLIDAPHLPEGEAVFSI 247
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 35.1 bits (79), Expect = 0.011
Identities = 29/214 (13%), Positives = 58/214 (27%), Gaps = 6/214 (2%)
Query: 109 RGPITMIVGPQDVGKSTLCHIL---LNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGAL 165
G IT + G GKS LCH L + + G K +++D + V +
Sbjct: 33 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRF 92
Query: 166 VIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGM 225
++ + + A + L A + + + + + + +
Sbjct: 93 GLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGEL 152
Query: 226 IINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGVV 285
K + L A V ++ + + P
Sbjct: 153 SARQMHLAK--FMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPTGGNIMAHSS 210
Query: 286 DRSRQFRAEARDKRIKEYFYGSRLKPFNPHSFDI 319
F+ +R+ + S P F I
Sbjct: 211 TTRLGFKKGKGCQRLCK-VVDSPCLPEAECVFAI 243
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 35.1 bits (80), Expect = 0.011
Identities = 18/161 (11%), Positives = 43/161 (26%), Gaps = 17/161 (10%)
Query: 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPA 171
+ M+VG GK+T C L V + + D + I +
Sbjct: 13 VIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTFRAAAIEQLKIWGERVGATV 69
Query: 172 TIEDGFSQLAPIVYNYGHLTPNANLELYQHCVER------------LWKSVDERMNKDSK 219
+ A + ++ N + ++ + V + K
Sbjct: 70 ISHSEGADPAAVAFDAVAHALARNKD--VVIIDTAGRLHTKKNLMEELRKVHRVVKKKIP 127
Query: 220 TNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER 260
++ +G +++ V I++ +
Sbjct: 128 DAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGIILTKLDG 168
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 33.6 bits (75), Expect = 0.034
Identities = 25/217 (11%), Positives = 59/217 (27%), Gaps = 12/217 (5%)
Query: 109 RGPITMIVGPQDVGKSTLC-HILLNYA--VRMPGLNRKPIFVDLDVGQGHVSVPGTIGAL 165
G IT + G GK+ +C + + + G K +++D + +
Sbjct: 22 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERY 81
Query: 166 VIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGM 225
+ +++ A + L A+ + + L + + + +
Sbjct: 82 GLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGEL 141
Query: 226 IINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNELIRELPKSYDVVLLPKSGGV- 284
+ L + + V+ ++ ++ + D +
Sbjct: 142 SARQMHL-----ARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 196
Query: 285 --VDRSRQFRAEARDKRIKEYFYGSRLKPFNPHSFDI 319
R + RI Y S P F I
Sbjct: 197 HASTTRLYLRKGRGETRIC-KIYDSPCLPEAEAMFAI 232
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 33.2 bits (74), Expect = 0.053
Identities = 31/223 (13%), Positives = 48/223 (21%), Gaps = 22/223 (9%)
Query: 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE 168
IT G GK+ L H L A + T +
Sbjct: 36 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKII---------FIDTENTFRPD 86
Query: 169 RPATIEDGFSQLAPIVY-NYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMII 227
R I D F+ V N + + + K +E S M +
Sbjct: 87 RLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 146
Query: 228 NTCGWIKGDG-----------FKCLMACAKSLRVDNILVLDQERLYNELIRELPKSYDVV 276
+ L ++ V + + +
Sbjct: 147 FRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPI 206
Query: 277 LLPKSGGVVDRSRQFRAEARDKRIKEYFYGSRLKPFNPHSFDI 319
R + RI Y S P N +F I
Sbjct: 207 GGHILAHASTTRISLRKGRGELRIA-KIYDSPEMPENEATFAI 248
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 32.4 bits (72), Expect = 0.088
Identities = 32/220 (14%), Positives = 56/220 (25%), Gaps = 10/220 (4%)
Query: 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVP-GTIGALVI 167
+T G GK+ + H L V +V T G
Sbjct: 33 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRP 92
Query: 168 ERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMII 227
ER + + V + + N ++ E++ + E N S
Sbjct: 93 ERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTST 152
Query: 228 NTCGWIKGDG--------FKCLMACAKSLRVDNILVLDQERLYNELIRELPKSYDVVLLP 279
+ + + K + N +VL ++ + + +
Sbjct: 153 FRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGH 212
Query: 280 KSGGVVDRSRQFRAEARDKRIKEYFYGSRLKPFNPHSFDI 319
G R DKR+ Y S P F I
Sbjct: 213 IVGHAATFRFFVRKGKGDKRVA-KLYDSPHLPDAEAIFRI 251
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 31.7 bits (71), Expect = 0.14
Identities = 12/66 (18%), Positives = 16/66 (24%), Gaps = 1/66 (1%)
Query: 101 SEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPG 160
+ G GKST + GL I VD S+ G
Sbjct: 45 DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM-LLIREGLKVAVIAVDPSSPVTGGSILG 103
Query: 161 TIGALV 166
+
Sbjct: 104 DKTRMN 109
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 31.4 bits (71), Expect = 0.18
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 15/56 (26%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIG 163
++G + I G GK++L ++L G L+ +G + G +
Sbjct: 60 EKGEMLAITGSTGSGKTSLLMLIL-------GE--------LEASEGIIKHSGRVS 100
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 31.2 bits (70), Expect = 0.20
Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Query: 107 SKRGP-ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGAL 165
+ P + ++VG VGK+T L + + + D + +
Sbjct: 5 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQ 61
Query: 166 VIERPATIEDGFSQLAPIVYNY 187
P + + A ++++
Sbjct: 62 RNNIPVIAQHTGADSASVIFDA 83
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 30.8 bits (68), Expect = 0.23
Identities = 15/140 (10%), Positives = 37/140 (26%), Gaps = 17/140 (12%)
Query: 112 ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPA 171
I ++ G VGKST+ + L+ + I ++ + A ++
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEI------LDNQGINNK------IINYGDFMLATALKL-- 48
Query: 172 TIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMIINTCG 231
++ + ++ + E + + D+ G
Sbjct: 49 GYAKDRDEMRKLSVEKQKKLQ---IDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPG 105
Query: 232 WIKGDGFKCLMACAKSLRVD 251
+ + L D
Sbjct: 106 LPSYVITEINPSVIFLLEAD 125
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 30.3 bits (67), Expect = 0.26
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 111 PITMIVGPQDVGKSTLCHILLNYAVR 136
P+ GK+TL L+
Sbjct: 3 PLLAFAAWSGTGKTTLLKKLIPALCA 28
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 30.4 bits (67), Expect = 0.27
Identities = 23/180 (12%), Positives = 47/180 (26%), Gaps = 20/180 (11%)
Query: 115 IVGPQDVGKSTLCHILLN---YAVRMPGLNRKPIFVDLDVGQG----HVSVPGTIGALVI 167
+VG + GKS+L + P P ++V + +PG I
Sbjct: 6 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 65
Query: 168 ERPATIE--------DGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSK 219
+ +E + E+ + L + +NK
Sbjct: 66 GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDL 125
Query: 220 TNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNELIRELPKSYDVVLLP 279
+ + ++ + + E L+ L+R P +P
Sbjct: 126 LEEEAVKALADALAREGLAVLPVSALTGAGLPALK----EALH-ALVRSTPPPEMPKPVP 180
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.7 bits (68), Expect = 0.29
Identities = 21/176 (11%), Positives = 45/176 (25%), Gaps = 17/176 (9%)
Query: 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDL--DVGQGHVSVPGTIGALV 166
+ I + G GK+ L + A + + + + S +
Sbjct: 25 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEME 84
Query: 167 IERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHC-------------VERLWKSVDER 213
+ I + + A + + + N + V
Sbjct: 85 RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGV 144
Query: 214 MNKDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNELIREL 269
+ +G+ NT G S D I++L + E+ R +
Sbjct: 145 TGYAKQEEITGLFTNTSDQFMGAHSITDS--HISTITDTIILLQYVEIRGEMSRAI 198
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 30.6 bits (68), Expect = 0.32
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 92 VHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLN 132
L + +Q+ +++G VGKS+ + ++
Sbjct: 14 TQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG 54
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 30.8 bits (69), Expect = 0.33
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 85 PMNYYMNVHIILEKQRSEAEQQ-----SKRGP-ITMIVGPQDVGKSTLCHILLNYAVRMP 138
P++ +N +I +R +Q +R P I I G VGKST +L R P
Sbjct: 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP 108
Query: 139 GLNRKPIFVDLD 150
+R+ + D
Sbjct: 109 E-HRRVELITTD 119
>d2dbsa1 d.374.1.1 (A:7-86) Hypothetical protein TTHC002 {Thermus
thermophilus [TaxId: 274]}
Length = 80
Score = 28.4 bits (63), Expect = 0.38
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 255 VLDQERLYNELIRELPKSYDVVLLP 279
VL Q L +L+RELP +Y +VLLP
Sbjct: 8 VLMQYLLEADLLRELPPTYRLVLLP 32
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 30.1 bits (67), Expect = 0.39
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 102 EAEQQSKRGP-ITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGH 155
E + + P + M+VG Q GK+T L + + K V DV +
Sbjct: 3 EPKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKK---GFKVGLVGADVYRPA 54
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 30.1 bits (67), Expect = 0.40
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQ 153
K + +VG Q GK+T L A+ G R+P+ V D +
Sbjct: 8 KDRNLWFLVGLQGSGKTTTAAKL---ALYYKGKGRRPLLVAADTQR 50
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 30.1 bits (66), Expect = 0.49
Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 5/167 (2%)
Query: 106 QSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGAL 165
+ R PIT+++G + GKS++ I +N L + + + ++S + L
Sbjct: 25 KGLRAPITLVLGLRRTGKSSIIKIGINEL----NLPYIYLDLRKFEERNYISYKDFLLEL 80
Query: 166 VIERPATIEDGFSQLAPIVYNYGHLTPNANLEL-YQHCVERLWKSVDERMNKDSKTNSSG 224
E ++ S L + G + ++ + + ++ E + SK N
Sbjct: 81 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVII 140
Query: 225 MIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNELIRELPK 271
++ +K G L A A + + L+ + +
Sbjct: 141 VLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLR 187
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 29.7 bits (65), Expect = 0.59
Identities = 13/148 (8%), Positives = 31/148 (20%), Gaps = 1/148 (0%)
Query: 95 ILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQG 154
I + S I +G +GK+TL + +
Sbjct: 31 IYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 90
Query: 155 HVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERM 214
+ TI +L++ + A + ++ +
Sbjct: 91 APN-LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR 149
Query: 215 NKDSKTNSSGMIINTCGWIKGDGFKCLM 242
+ + G +
Sbjct: 150 IAAEDLYTLLRVHEEIPSRDGVNRIGFL 177
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 29.2 bits (64), Expect = 0.60
Identities = 21/168 (12%), Positives = 46/168 (27%), Gaps = 16/168 (9%)
Query: 114 MIVGPQDVGKSTLCHILLN-----YAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGA--LV 166
+++G VGKS+L + + G V LD + T G
Sbjct: 10 VLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH 69
Query: 167 IERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGM- 225
P + + A + + + V + +
Sbjct: 70 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAV 129
Query: 226 -IINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNELIRELPKS 272
+ + + AK+ N+ ++ + ++LPK+
Sbjct: 130 DFQEAQSYADDNSLLFMETSAKTS--MNV-----NEIFMAIAKKLPKN 170
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 29.3 bits (64), Expect = 0.61
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 9/36 (25%)
Query: 97 EKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLN 132
EK S IVG +VGKSTL + LL
Sbjct: 1 EKTYS---------GFVAIVGKPNVGKSTLLNNLLG 27
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 30.0 bits (67), Expect = 0.66
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 4/69 (5%)
Query: 70 MKNARKNMTYVSKETPMNYYMNVHIILEKQRSEA----EQQSKRGPITMIVGPQDVGKST 125
M + + + + + ++ + + + GP D GK+T
Sbjct: 110 MFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTT 169
Query: 126 LCHILLNYA 134
L LL
Sbjct: 170 LAAALLELC 178
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 29.5 bits (66), Expect = 0.67
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILL 131
+ I GP GKST+ +L
Sbjct: 26 QPNSIIAFAGPSGGGKSTIFSLLE 49
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 29.3 bits (65), Expect = 0.71
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGH 155
+G + ++VG VGK+T L Y + +K +F D +
Sbjct: 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAA 48
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 29.6 bits (66), Expect = 0.75
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 108 KRGPITMIVGPQDVGKSTLCHIL 130
+G +T+I+GP GKSTL +++
Sbjct: 28 NKGDVTLIIGPNGSGKSTLINVI 50
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 29.2 bits (64), Expect = 0.80
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 109 RGPITMIVGPQDVGKSTLC-HILLNYAVRMPGLNRKPIF 146
G + +V P GKS L + A L +
Sbjct: 28 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELP 66
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 28.8 bits (63), Expect = 0.84
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 95 ILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLN 132
IL K +S +Q+ + +++G + GK+TL L +
Sbjct: 5 ILRKLKSAPDQEVR----ILLLGLDNAGKTTLLKQLAS 38
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 28.5 bits (63), Expect = 0.87
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 2/87 (2%)
Query: 109 RGPITMIVGPQDVGKST-LCHILLNYAVR-MPGLNRKPIFVDLDVGQGHVSVPGTIGALV 166
RG I +I+GP GKST L + + + L K T+ AL
Sbjct: 1 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALP 60
Query: 167 IERPATIEDGFSQLAPIVYNYGHLTPN 193
+ +A I + G P+
Sbjct: 61 ACLLRDVAQEALGVAVIGIDEGQFFPD 87
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 28.8 bits (63), Expect = 0.88
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 110 GPITMIVGPQDVGKSTLCHILL 131
G + ++ GP VGKST+ L
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLR 23
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 28.8 bits (63), Expect = 0.94
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 112 ITMIVGPQDVGKSTLCHILLNY 133
+ ++ G VG +T + ++
Sbjct: 3 VVVVTGVPGVGSTTSSQLAMDN 24
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 29.1 bits (65), Expect = 0.94
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILL 131
K+G + IVG GKSTL ++
Sbjct: 27 KQGEVIGIVGRSGSGKSTLTKLIQ 50
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 28.8 bits (63), Expect = 0.97
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 111 PITMIVGPQDVGKSTLCHILLN 132
P +I GPQ+ GK++L +L
Sbjct: 4 PSIIIAGPQNSGKTSLLTLLTT 25
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 28.9 bits (64), Expect = 1.0
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILL 131
+ G I+GP GK+T I+
Sbjct: 29 ENGERFGILGPSGAGKTTFMRIIA 52
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 29.1 bits (65), Expect = 1.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILL 131
+ G +T +VGP GKST+ +L
Sbjct: 38 RPGEVTALVGPNGSGKSTVAALLQ 61
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 28.7 bits (64), Expect = 1.1
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILL 131
++G + GP +GK+TL +
Sbjct: 25 EKGNVVNFHGPNGIGKTTLLKTIS 48
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 29.0 bits (65), Expect = 1.2
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILL 131
++G VG GKSTL +++
Sbjct: 42 EKGETVAFVGMSGGGKSTLINLIP 65
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 28.7 bits (64), Expect = 1.2
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 108 KRGPITMIVGPQDVGKSTLCHIL 130
+ G + I+G GKST +
Sbjct: 26 RAGDVISIIGSSGSGKSTFLRCI 48
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 28.7 bits (64), Expect = 1.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILL 131
+ G I +VGP GKSTL +
Sbjct: 23 RAGEILHLVGPNGAGKSTLLARMA 46
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 28.5 bits (62), Expect = 1.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 109 RGPITMIVGPQDVGKSTLCHILLNYAV 135
R PI ++G D GK+TL + AV
Sbjct: 4 RSPIVSVLGHVDHGKTTLLDHIRGSAV 30
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 28.7 bits (64), Expect = 1.3
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILL 131
G +VG GKST+ ++
Sbjct: 39 PAGKTVALVGRSGSGKSTIASLIT 62
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 28.8 bits (64), Expect = 1.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 108 KRGPITMIVGPQDVGKSTLCHIL 130
G + VGP GKSTL ++
Sbjct: 24 HEGEFVVFVGPSGCGKSTLLRMI 46
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 28.3 bits (62), Expect = 1.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 110 GPITMIVGPQDVGKSTLCHILL 131
G + ++ P GKS+L LL
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALL 23
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 28.4 bits (63), Expect = 1.4
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILL 131
K G +++GP GK+T ++
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIA 50
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 28.5 bits (63), Expect = 1.4
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 108 KRGPITMIVGPQDVGKSTLCHIL 130
+ G +I+GP GK+ ++
Sbjct: 24 ESGEYFVILGPTGAGKTLFLELI 46
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 28.6 bits (64), Expect = 1.4
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILL 131
K G +++GP GK+T ++
Sbjct: 30 KDGEFLVLLGPSGCGKTTTLRMIA 53
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 28.3 bits (63), Expect = 1.7
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 108 KRGPITMIVGPQDVGKSTLCHIL 130
RG I ++G GK+T +
Sbjct: 30 PRGQIVTLIGANGAGKTTTLSAI 52
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 28.2 bits (61), Expect = 1.8
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 109 RGPITMIVGPQDVGKSTLCHILLNY 133
G G + GKS+ + L N
Sbjct: 15 TGIEVAFAGRSNAGKSSALNTLTNQ 39
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 28.1 bits (61), Expect = 1.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 115 IVGPQDVGKSTLCHILLNYAV 135
IVG +VGKSTL + +LN
Sbjct: 13 IVGRPNVGKSTLFNAILNKER 33
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 27.9 bits (62), Expect = 2.0
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 108 KRGPITMIVGPQDVGKSTLCHIL 130
G I ++G GKSTL +
Sbjct: 29 PAGQIYGVIGASGAGKSTLIRCV 51
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 27.6 bits (60), Expect = 2.2
Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 13/174 (7%)
Query: 104 EQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIG 163
E++ K+ I +VG GK T C ++ +K + L G + +
Sbjct: 2 EEKLKKSKIIFVVGGPGSGKGTQCEKIV----------QKYGYTHLSTGDLLRAEVSSGS 51
Query: 164 ALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLW-KSVDERMNKDSKTNS 222
A +E G V + A ++ + + + + V + + K
Sbjct: 52 ARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIGQ 111
Query: 223 SGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQER--LYNELIRELPKSYD 274
+++ + + L S RVD+ ++R Y + + Y+
Sbjct: 112 PTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYE 165
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 27.8 bits (60), Expect = 2.2
Identities = 25/170 (14%), Positives = 53/170 (31%), Gaps = 18/170 (10%)
Query: 115 IVGPQDVGKSTLCHILLNYAV----RMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERP 170
IVG +VGKSTL + LL + R R I G T G + E+
Sbjct: 10 IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 69
Query: 171 ATIEDGFSQLAPIVYNYGHL--------TPNANLELYQHCVERLWKSVDERMNKDSKTNS 222
A + + + + + + E + D+
Sbjct: 70 AINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEK 129
Query: 223 SGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNELIRELPKS 272
+ ++ + F ++ + + N+ + + + + LP++
Sbjct: 130 ADLLPHLQFLASQMNFLDIVPIS-AETGLNV-----DTIAAIVRKHLPEA 173
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 27.9 bits (61), Expect = 2.3
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 95 ILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNY 133
+ Q+ R I G VGKST L +
Sbjct: 36 AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL 74
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 27.5 bits (60), Expect = 2.4
Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 16/168 (9%)
Query: 114 MIVGPQDVGKSTLCHILLNYAVR-----MPGLNRKPIFVDLDVGQGHVSVPGTIG----A 164
+I+G VGKS+L + G++ K + +D + +++ T G
Sbjct: 11 LIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR 70
Query: 165 LVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSG 224
+ G + + + + L + R NK K N
Sbjct: 71 TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREV 130
Query: 225 MIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNELIRELPKS 272
+ + + A AK+ D + + + EL+ ++ ++
Sbjct: 131 DRNEGLKFARKHSMLFIEASAKT--CDGV-----QCAFEELVEKIIQT 171
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 27.4 bits (59), Expect = 2.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 115 IVGPQDVGKSTLCHILLNYAV 135
IVG +VGKSTL + L+
Sbjct: 5 IVGRPNVGKSTLFNKLVKKKK 25
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal
domain {Clostridium acetobutylicum [TaxId: 1488]}
Length = 141
Score = 27.0 bits (59), Expect = 2.6
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 109 RGPITMIVGPQDVGKST-LCHILLNYAVRM 137
G + +IVGP GKS L + +
Sbjct: 6 HGWVEVIVGPMYSGKSEELIRRIRRAKIAK 35
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 27.6 bits (61), Expect = 2.6
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILL 131
+ G I ++GP GK+T I+
Sbjct: 26 EEGEIFGLIGPNGAGKTTTLRIIS 49
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 27.8 bits (60), Expect = 2.7
Identities = 14/158 (8%), Positives = 32/158 (20%), Gaps = 7/158 (4%)
Query: 103 AEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDV-------GQGH 155
+ S M+ GP +GK+T H++ + +
Sbjct: 45 GKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDN 104
Query: 156 VSVPGTIGALVIERPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMN 215
+SV G + + + + G +
Sbjct: 105 MSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNER 164
Query: 216 KDSKTNSSGMIINTCGWIKGDGFKCLMACAKSLRVDNI 253
K + + + D +
Sbjct: 165 NLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF 202
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 27.6 bits (60), Expect = 2.8
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 115 IVGPQDVGKSTLCHILL 131
+ GP GKSTL L
Sbjct: 5 LSGPSGAGKSTLLKKLF 21
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.7 bits (60), Expect = 2.8
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 109 RGPITMIVGPQDVGKSTLC-HILLNYAVRMPG 139
G T++ G GK+ L N +
Sbjct: 25 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE 56
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 27.4 bits (60), Expect = 2.9
Identities = 33/174 (18%), Positives = 53/174 (30%), Gaps = 13/174 (7%)
Query: 23 VENAQIEIEVTSGLAEIFGVELVKSKKYLFPIGAKGA----VYTWHGCSITMKNARKNMT 78
+ N + V S + F L+ ++L + A T
Sbjct: 8 ICNVDQAVLVFSAVQPSFSTALLD--RFLVLVEANDIQPIICITKMDLIEDQDTEDTIQA 65
Query: 79 YVSKETPMNYYMNVHIILEKQRSEAEQQSKRGPITMIVGPQDVGKSTLCHILLNYAVRMP 138
Y + Y + + ++ + T+ G VGKS+ LLN
Sbjct: 66 YAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSS----LLNAISPEL 121
Query: 139 GLNRKPIFVDLDVGQ---GHVSVPGTIGALVIERPATIEDGFSQLAPIVYNYGH 189
GL I L G+ HV + T G LV + P F+ + Y
Sbjct: 122 GLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEEEELGYTF 175
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 27.2 bits (59), Expect = 2.9
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 109 RGPITMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDV 151
G I ++ G GKST+ L N + D
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALAN------LPGVPKVHFHSDD 39
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 27.1 bits (59), Expect = 2.9
Identities = 5/23 (21%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 109 RGPITMIVGPQDVGKSTLCHILL 131
R + +++G VG+ + + L+
Sbjct: 3 RKTL-VLLGAHGVGRRHIKNTLI 24
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 27.4 bits (59), Expect = 3.0
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 90 MNVHIILEKQRSEAEQQSKRGPITM-IVGPQDVGKSTLCHIL 130
M + ++ G + + I G GK+TL + L
Sbjct: 1 MELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQL 42
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 27.2 bits (60), Expect = 3.2
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 114 MIVGPQDVGKSTLCHILLNYAVRM 137
+I G +GKS L+ R+
Sbjct: 19 LITGDSGIGKSETALELIKRGHRL 42
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 27.3 bits (59), Expect = 3.4
Identities = 20/159 (12%), Positives = 40/159 (25%), Gaps = 26/159 (16%)
Query: 115 IVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATIE 174
VG D GK+ L R + S+ + +
Sbjct: 5 FVGLCDSGKTLL-------------FVR---LLTGQYRDTQTSITDSSAIYKVNNNRGNS 48
Query: 175 DGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGMI--INTCGW 232
L L ++ + VD + + + + +
Sbjct: 49 LTLIDLPGHESLRFQLLDR-----FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSM 103
Query: 233 IKGDGFKCLMACAKSLRVDNILVLDQERLYNELIRELPK 271
+ L+AC K D + + + +L +EL
Sbjct: 104 ALKNSPSLLIACNKQ---DIAMAKSAKLIQQQLEKELNT 139
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 27.2 bits (59), Expect = 3.5
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 115 IVGPQDVGKSTLCHILLN 132
I GP GKSTL L
Sbjct: 6 ISGPSGTGKSTLLKKLFA 23
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 27.0 bits (58), Expect = 3.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 115 IVGPQDVGKSTLCHILLN 132
I G + GKS+L + L
Sbjct: 6 IAGRPNAGKSSLLNALAG 23
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 27.0 bits (58), Expect = 4.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 111 PITMIVGPQDVGKSTLCHILLNY 133
P + G +VGKS+ + L+N
Sbjct: 24 PEIALAGRSNVGKSSFINSLINR 46
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 26.6 bits (57), Expect = 4.3
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 114 MIVGPQDVGKSTLCHILLN 132
+VG Q GK+T +++ +
Sbjct: 6 TLVGLQYSGKTTFVNVIAS 24
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 27.0 bits (58), Expect = 4.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 112 ITMIVGPQDVGKSTLCHILL 131
I +I+G GKS+L +L
Sbjct: 25 INLIIGQNGSGKSSLLDAIL 44
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 26.8 bits (58), Expect = 4.7
Identities = 24/168 (14%), Positives = 51/168 (30%), Gaps = 22/168 (13%)
Query: 114 MIVGPQDVGKSTLCHILLN-----YAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE 168
+I+G VGKS L H G+ +++ + + + T G E
Sbjct: 8 IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ---E 64
Query: 169 RPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERM-------NKDSKTN 221
R + + + A +T + + + D +
Sbjct: 65 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 124
Query: 222 SSGMIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNELIREL 269
+ + +G L A AK+ +N+ E + E +++
Sbjct: 125 RDVTYEEAKQFAEENGLLFLEASAKTG--ENV-----EDAFLEAAKKI 165
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 26.5 bits (57), Expect = 4.7
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 115 IVGPQDVGKSTLCHILLN 132
I G VGK+TL ++
Sbjct: 5 ITGEPGVGKTTLVKKIVE 22
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 26.5 bits (57), Expect = 4.8
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 115 IVGPQDVGKSTLCHILLN 132
IVG +VGKSTL + LLN
Sbjct: 5 IVGKPNVGKSTLLNRLLN 22
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 26.6 bits (57), Expect = 4.9
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 114 MIVGPQDVGKSTLCHILLNYAVR---MPGLNRKPIF 146
+ G +VGKSTL + L VR PG+ RK I
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE 39
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 26.4 bits (57), Expect = 5.4
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 115 IVGPQDVGKSTLCHILLN---YAVRMPGLNRKPIFVDLDVGQG----HVSVPGTI 162
+VG VGKSTL ++ + P ++ G +PG I
Sbjct: 6 LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 26.5 bits (57), Expect = 5.7
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 112 ITMIVGPQDVGKSTLCHILLN 132
+ + G GKS++C ++
Sbjct: 4 LIGVSGGTASGKSSVCAKIVQ 24
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 26.5 bits (57), Expect = 5.7
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 108 KRGPITMIVGPQDVGKSTLCHILLNY 133
+RG + ++ G GKST L+
Sbjct: 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 26.7 bits (59), Expect = 5.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 108 KRGPITMIVGPQDVGKSTLCHI 129
K G I+GP GKST+ +I
Sbjct: 29 KEGEFVSIMGPSGSGKSTMLNI 50
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 26.4 bits (57), Expect = 6.0
Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 16/165 (9%)
Query: 114 MIVGPQDVGKSTLCHILLN-----YAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE 168
+++G GKS L H + + G+ +++ + + T G
Sbjct: 9 LVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR 68
Query: 169 RPATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERM----NKDSKTNSSG 224
+ A +VY+ L + L + KD +
Sbjct: 69 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREV 128
Query: 225 MIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNELIREL 269
+ + + + L A + +N+ E + + R++
Sbjct: 129 TFLEASRFAQENELMFLETSALTG--ENV-----EEAFVQCARKI 166
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 26.5 bits (57), Expect = 6.1
Identities = 9/74 (12%), Positives = 22/74 (29%), Gaps = 7/74 (9%)
Query: 99 QRSEAEQQSKRGPI-TMIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVS 157
+ +++ P ++ G GK++L + I +D D +
Sbjct: 20 EELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE------ETQGNVIVIDNDTFKQQHP 73
Query: 158 VPGTIGALVIERPA 171
+ L +
Sbjct: 74 NFDELVKLYEKDVV 87
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 26.1 bits (57), Expect = 6.7
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 2/60 (3%)
Query: 114 MIVGPQDVGKSTLCHILLNYAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIERPATI 173
++ G +GKS L+N + I + + + R I
Sbjct: 19 LLTGRSGIGKSECALDLINKNHLF--VGDDAIEIYRLGNRLFGRAQEVAKKFMEIRGLGI 76
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 26.2 bits (56), Expect = 7.0
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 115 IVGPQDVGKSTLCHILLNY 133
I+G + GKS L + L
Sbjct: 12 ILGGESSGKSVLVNKLAAV 30
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 26.4 bits (57), Expect = 7.3
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 113 TMIVGPQDVGKSTLCHILLNYAVRMPG 139
++ G GKS L L +
Sbjct: 53 LLVNGATGTGKSVLLRELAYTGLLRGD 79
>d1na6a2 c.52.1.22 (A:179-398) Restriction endonuclease EcoRII,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 220
Score = 26.0 bits (57), Expect = 7.6
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 170 PATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDER 213
P+ E Q A Y L P+ L + ++ V+E
Sbjct: 16 PSGSE--IIQYAASHYVKNSLDPDEQLLDRRRVEYDIFLLVEEL 57
>d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3
and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 198
Score = 26.0 bits (57), Expect = 8.0
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 8/71 (11%)
Query: 343 VTATEFLTKVVLVQPGPSL------LHHLLALSFATTESEILEQNIVGFVCVTHVDMLRQ 396
+ ++F+ K+ G + L ++ AL + +
Sbjct: 69 IVVSKFIAKLEQDIGGKGVKKQLNNLCYIYALYLLHKHLGDFLST--NCITPKQASLAND 126
Query: 397 SLSVLCLQARP 407
L L Q RP
Sbjct: 127 QLRSLYTQVRP 137
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 25.7 bits (55), Expect = 8.1
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 106 QSKRGPITMIVGPQDVGKSTLCHIL 130
+ +G +I G GK+++ ++
Sbjct: 1 EQPKGINILITGTPGTGKTSMAEMI 25
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 26.0 bits (56), Expect = 8.2
Identities = 23/170 (13%), Positives = 60/170 (35%), Gaps = 22/170 (12%)
Query: 114 MIVGPQDVGKSTLCHILLN-----YAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIE 168
+I+G VGK++ + V G++ K + + + + + T G E
Sbjct: 9 LIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG---QE 65
Query: 169 RPATIEDGF---SQLAPIVYNYGHLTPNANLELYQHCVERLWKSVDERMNKDSKTNSSGM 225
R TI + + ++Y+ + ++ + ++ + + +K +
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 226 IINTCG----WIKGDGFKCLMACAKSLRVDNILVLDQERLYNELIRELPK 271
+ + GF+ A AK N+ ++ + L+ + +
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDN--INV-----KQTFERLVDVICE 168
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 25.8 bits (55), Expect = 8.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 115 IVGPQDVGKSTLCHILLNYA 134
I G D GK+TL +L A
Sbjct: 10 IFGHIDHGKTTLSKVLTEIA 29
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 26.2 bits (57), Expect = 8.7
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 106 QSKRGPITM--IVGPQDVGKSTLCHILLNYAVRMP 138
+ P+ + IVG GKS L + L
Sbjct: 26 SAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFS 60
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid
aminotransferase {Human (Homo sapiens), mitochondrial
[TaxId: 9606]}
Length = 363
Score = 26.4 bits (57), Expect = 8.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 415 LTDIQYMDRLHQWVYSV 431
L +IQY R H+W++ V
Sbjct: 347 LKEIQYGIRAHEWMFPV 363
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 26.1 bits (57), Expect = 8.9
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 107 SKRGPITMIVGPQDVGKSTLCHIL 130
+++GP GKS ++
Sbjct: 21 EMGRDYCVLLGPTGAGKSVFLELI 44
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 26.2 bits (56), Expect = 9.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 111 PITMIVGPQDVGKSTLCHIL 130
P+ I GP GK TLC +
Sbjct: 4 PVITIDGPSGAGKGTLCKAM 23
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 25.8 bits (55), Expect = 9.6
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 114 MIVGPQDVGKSTLCHILLN 132
+I+G GK+T+ + L
Sbjct: 9 LILGLDGAGKTTILYRLQV 27
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 25.8 bits (55), Expect = 9.8
Identities = 21/167 (12%), Positives = 42/167 (25%), Gaps = 16/167 (9%)
Query: 114 MIVGPQDVGKSTLCHILLN----YAVRMPGLNRKPIFVDLDVGQGHVSVPGTIGALVIER 169
++VG VGKS L + + +D + + T G
Sbjct: 10 VVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA 69
Query: 170 PATIEDGFSQLAPIVYNYGHLTPNANLELYQHCVERLW-----KSVDERMNKDSKTNSSG 224
+V+ + + R+ V D ++
Sbjct: 70 MREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQV 129
Query: 225 MIINTCGWIKGDGFKCLMACAKSLRVDNILVLDQERLYNELIRELPK 271
+ A AK N+ + + +L+R + K
Sbjct: 130 PRSEASAFGASHHVAYFEASAKLR--LNV-----DEAFEQLVRAVRK 169
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 25.8 bits (55), Expect = 9.8
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 114 MIVGPQDVGKSTLCHILLN 132
+++G + GK+T+
Sbjct: 6 LMLGLDNAGKTTILKKFNG 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.410
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,691,832
Number of extensions: 79540
Number of successful extensions: 424
Number of sequences better than 10.0: 1
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 113
Length of query: 455
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 367
Effective length of database: 1,199,356
Effective search space: 440163652
Effective search space used: 440163652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.6 bits)